@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/dist/SNPCoverageRenderer/index.js

@@ -1,34 +1,23 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = void 0;
-exports.default = register;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _configSchema = _interopRequireDefault(require("./configSchema"));
-
-var _SNPCoverageRenderer = _interopRequireDefault(require("./SNPCoverageRenderer"));
-
-var _pluginWiggle = require("@jbrowse/plugin-wiggle");
-
-var configSchema = (0, _configuration.ConfigurationSchema)('SNPCoverageRenderer', {}, {
-  baseConfiguration: _configSchema.default,
-  explicitlyTyped: true
-});
-exports.configSchema = configSchema;
-
+var configuration_1 = require("@jbrowse/core/configuration");
+var configSchema_1 = __importDefault(require("./configSchema"));
+var SNPCoverageRenderer_1 = __importDefault(require("./SNPCoverageRenderer"));
+var plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
+exports.configSchema = (0, configuration_1.ConfigurationSchema)('SNPCoverageRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
 function register(pluginManager) {
-  pluginManager.addRendererType(function () {
-    return new _SNPCoverageRenderer.default({
-      name: 'SNPCoverageRenderer',
-      ReactComponent: _pluginWiggle.WiggleRendering,
-      configSchema: configSchema,
-      pluginManager: pluginManager
+    pluginManager.addRendererType(function () {
+        return new SNPCoverageRenderer_1.default({
+            name: 'SNPCoverageRenderer',
+            ReactComponent: plugin_wiggle_1.WiggleRendering,
+            configSchema: exports.configSchema,
+            pluginManager: pluginManager,
+        });
     });
-  });
-}
+}
+exports.default = register;
+//# sourceMappingURL=index.js.map

package/dist/SNPCoverageRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/index.ts"],"names":[],"mappings":";;;;;;AAAA,6DAAiE;AACjE,gEAAyC;AAEzC,8EAAuD;AAEvD,wDAAwD;AAE3C,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,qBAAqB,EACrB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,SAAwB,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,6BAAmB,CAAC;YACtB,IAAI,EAAE,qBAAqB;YAC3B,cAAc,EAAE,+BAAe;YAC/B,YAAY,sBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC;AAVD,2BAUC"}

package/dist/index.js

@@ -1,156 +1,139 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = exports.MismatchParser = void 0;
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _Plugin2 = _interopRequireDefault(require("@jbrowse/core/Plugin"));
-
-var MismatchParser = _interopRequireWildcard(require("./BamAdapter/MismatchParser"));
-
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.MismatchParser = void 0;
+var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+var MismatchParser = __importStar(require("./BamAdapter/MismatchParser"));
 exports.MismatchParser = MismatchParser;
-
-var _CramAdapter = _interopRequireDefault(require("./CramAdapter"));
-
-var _BamAdapter = _interopRequireDefault(require("./BamAdapter"));
-
-var _HtsgetBamAdapter = _interopRequireDefault(require("./HtsgetBamAdapter"));
-
-var _SNPCoverageAdapter = _interopRequireDefault(require("./SNPCoverageAdapter"));
-
-var _SNPCoverageRenderer = _interopRequireDefault(require("./SNPCoverageRenderer"));
-
-var _PileupRenderer = _interopRequireDefault(require("./PileupRenderer"));
-
-var _LinearAlignmentsDisplay = _interopRequireDefault(require("./LinearAlignmentsDisplay"));
-
-var _LinearSNPCoverageDisplay = _interopRequireDefault(require("./LinearSNPCoverageDisplay"));
-
-var _LinearPileupDisplay = _interopRequireDefault(require("./LinearPileupDisplay"));
-
-var _AlignmentsTrack = _interopRequireDefault(require("./AlignmentsTrack"));
-
-var _AlignmentsFeatureDetail = _interopRequireDefault(require("./AlignmentsFeatureDetail"));
-
-var _rpcMethods = require("./PileupRPC/rpcMethods");
-
-var _tracks = require("@jbrowse/core/util/tracks");
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var AlignmentsPlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2.default)(AlignmentsPlugin, _Plugin);
-
-  var _super = _createSuper(AlignmentsPlugin);
-
-  function AlignmentsPlugin() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, AlignmentsPlugin);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
-    }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'AlignmentsPlugin');
-    return _this;
-  }
-
-  (0, _createClass2.default)(AlignmentsPlugin, [{
-    key: "install",
-    value: function install(pluginManager) {
-      ;
-      [_BamAdapter.default, _CramAdapter.default, _LinearPileupDisplay.default, _LinearSNPCoverageDisplay.default, _AlignmentsTrack.default, _SNPCoverageAdapter.default, _HtsgetBamAdapter.default, _PileupRenderer.default, _SNPCoverageRenderer.default, _LinearAlignmentsDisplay.default, _AlignmentsFeatureDetail.default].map(function (f) {
-        return f(pluginManager);
-      });
-      pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-        return function (file, index, adapterHint) {
-          var regexGuess = /\.cram$/i;
-          var adapterName = 'CramAdapter';
-          var fileName = (0, _tracks.getFileName)(file);
-          var obj = {
-            type: adapterName,
-            cramLocation: file,
-            craiLocation: index || (0, _tracks.makeIndex)(file, '.crai')
-          };
-
-          if (regexGuess.test(fileName) && !adapterHint) {
-            return obj;
-          } else if (adapterHint === adapterName) {
-            return obj;
-          }
-
-          return adapterGuesser(file, index, adapterHint);
-        };
-      });
-      pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-        return function (file, index, adapterHint) {
-          var regexGuess = /\.bam$/i;
-          var adapterName = 'BamAdapter';
-          var fileName = (0, _tracks.getFileName)(file);
-          var indexName = index && (0, _tracks.getFileName)(index);
-          var obj = {
-            type: adapterName,
-            bamLocation: file,
-            index: {
-              location: index || (0, _tracks.makeIndex)(file, '.bai'),
-              indexType: (0, _tracks.makeIndexType)(indexName, 'CSI', 'BAI')
-            }
-          };
-
-          if (regexGuess.test(fileName) && !adapterHint) {
-            return obj;
-          } else if (adapterHint === adapterName) {
-            return obj;
-          }
-
-          return adapterGuesser(file, index, adapterHint);
-        };
-      });
-      pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
-        return function (adapterName) {
-          if (adapterName === 'BamAdapter' || adapterName === 'CramAdapter') {
-            return 'AlignmentsTrack';
-          }
-
-          return trackTypeGuesser(adapterName);
-        };
-      });
-      pluginManager.addRpcMethod(function () {
-        return new _rpcMethods.PileupGetGlobalValueForTag(pluginManager);
-      });
-      pluginManager.addRpcMethod(function () {
-        return new _rpcMethods.PileupGetVisibleModifications(pluginManager);
-      });
+var CramAdapter_1 = __importDefault(require("./CramAdapter"));
+var BamAdapter_1 = __importDefault(require("./BamAdapter"));
+var HtsgetBamAdapter_1 = __importDefault(require("./HtsgetBamAdapter"));
+var SNPCoverageAdapter_1 = __importDefault(require("./SNPCoverageAdapter"));
+var SNPCoverageRenderer_1 = __importDefault(require("./SNPCoverageRenderer"));
+var PileupRenderer_1 = __importDefault(require("./PileupRenderer"));
+var LinearAlignmentsDisplay_1 = __importDefault(require("./LinearAlignmentsDisplay"));
+var LinearSNPCoverageDisplay_1 = __importDefault(require("./LinearSNPCoverageDisplay"));
+var LinearPileupDisplay_1 = __importDefault(require("./LinearPileupDisplay"));
+var AlignmentsTrack_1 = __importDefault(require("./AlignmentsTrack"));
+var AlignmentsFeatureDetail_1 = __importDefault(require("./AlignmentsFeatureDetail"));
+var rpcMethods_1 = require("./PileupRPC/rpcMethods");
+var tracks_1 = require("@jbrowse/core/util/tracks");
+var AlignmentsPlugin = /** @class */ (function (_super) {
+    __extends(AlignmentsPlugin, _super);
+    function AlignmentsPlugin() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.name = 'AlignmentsPlugin';
+        return _this;
     }
-  }]);
-  return AlignmentsPlugin;
-}(_Plugin2.default);
-
-exports.default = AlignmentsPlugin;
+    AlignmentsPlugin.prototype.install = function (pluginManager) {
+        ;
+        [
+            BamAdapter_1.default,
+            CramAdapter_1.default,
+            LinearPileupDisplay_1.default,
+            LinearSNPCoverageDisplay_1.default,
+            AlignmentsTrack_1.default,
+            SNPCoverageAdapter_1.default,
+            HtsgetBamAdapter_1.default,
+            PileupRenderer_1.default,
+            SNPCoverageRenderer_1.default,
+            LinearAlignmentsDisplay_1.default,
+            AlignmentsFeatureDetail_1.default,
+        ].map(function (f) { return f(pluginManager); });
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
+            return function (file, index, adapterHint) {
+                var regexGuess = /\.cram$/i;
+                var adapterName = 'CramAdapter';
+                var fileName = (0, tracks_1.getFileName)(file);
+                var obj = {
+                    type: adapterName,
+                    cramLocation: file,
+                    craiLocation: index || (0, tracks_1.makeIndex)(file, '.crai'),
+                };
+                if (regexGuess.test(fileName) && !adapterHint) {
+                    return obj;
+                }
+                else if (adapterHint === adapterName) {
+                    return obj;
+                }
+                return adapterGuesser(file, index, adapterHint);
+            };
+        });
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
+            return function (file, index, adapterHint) {
+                var regexGuess = /\.bam$/i;
+                var adapterName = 'BamAdapter';
+                var fileName = (0, tracks_1.getFileName)(file);
+                var indexName = index && (0, tracks_1.getFileName)(index);
+                var obj = {
+                    type: adapterName,
+                    bamLocation: file,
+                    index: {
+                        location: index || (0, tracks_1.makeIndex)(file, '.bai'),
+                        indexType: (0, tracks_1.makeIndexType)(indexName, 'CSI', 'BAI'),
+                    },
+                };
+                if (regexGuess.test(fileName) && !adapterHint) {
+                    return obj;
+                }
+                else if (adapterHint === adapterName) {
+                    return obj;
+                }
+                return adapterGuesser(file, index, adapterHint);
+            };
+        });
+        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
+            return function (adapterName) {
+                if (adapterName === 'BamAdapter' || adapterName === 'CramAdapter') {
+                    return 'AlignmentsTrack';
+                }
+                return trackTypeGuesser(adapterName);
+            };
+        });
+        pluginManager.addRpcMethod(function () { return new rpcMethods_1.PileupGetGlobalValueForTag(pluginManager); });
+        pluginManager.addRpcMethod(function () { return new rpcMethods_1.PileupGetVisibleModifications(pluginManager); });
+    };
+    return AlignmentsPlugin;
+}(Plugin_1.default));
+exports.default = AlignmentsPlugin;
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gEAAyC;AAEzC,0EAA6D;AA2BpD,wCAAc;AAxBvB,8DAAuC;AACvC,4DAAuC;AACvC,wEAAkD;AAClD,4EAAsD;AACtD,8EAAwD;AACxD,oEAA8C;AAC9C,sFAAgE;AAChE,wFAAkE;AAClE,8EAAwD;AACxD,sEAAgD;AAChD,sFAAgE;AAEhE,qDAG+B;AAC/B,oDAMkC;AAKlC;IAA8C,oCAAM;IAApD;QAAA,qEA6FC;QA5FC,UAAI,GAAG,kBAAkB,CAAA;;IA4F3B,CAAC;IA1FC,kCAAO,GAAP,UAAQ,aAA4B;QAClC,CAAC;QAAA;YACC,oBAAY;YACZ,qBAAW;YACX,6BAAoB;YACpB,kCAAyB;YACzB,yBAAgB;YAChB,4BAAmB;YACnB,0BAAiB;YACjB,wBAAe;YACf,6BAAoB;YACpB,iCAAwB;YACxB,iCAAwB;SACzB,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,aAAa,CAAC,EAAhB,CAAgB,CAAC,CAAA;QAE5B,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,UAAC,cAA8B;YAC7B,OAAO,UACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB;gBAEpB,IAAM,UAAU,GAAG,UAAU,CAAA;gBAC7B,IAAM,WAAW,GAAG,aAAa,CAAA;gBACjC,IAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,IAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,YAAY,EAAE,IAAI;oBAClB,YAAY,EAAE,KAAK,IAAI,IAAA,kBAAS,EAAC,IAAI,EAAE,OAAO,CAAC;iBAChD,CAAA;gBACD,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE;oBAC7C,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,WAAW,KAAK,WAAW,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,UAAC,cAA8B;YAC7B,OAAO,UACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB;gBAEpB,IAAM,UAAU,GAAG,SAAS,CAAA;gBAC5B,IAAM,WAAW,GAAG,YAAY,CAAA;gBAChC,IAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,IAAM,SAAS,GAAG,KAAK,IAAI,IAAA,oBAAW,EAAC,KAAK,CAAC,CAAA;gBAE7C,IAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,WAAW,EAAE,IAAI;oBACjB,KAAK,EAAE;wBACL,QAAQ,EAAE,KAAK,IAAI,IAAA,kBAAS,EAAC,IAAI,EAAE,MAAM,CAAC;wBAC1C,SAAS,EAAE,IAAA,sBAAa,EAAC,SAAS,EAAE,KAAK,EAAE,KAAK,CAAC;qBAClD;iBACF,CAAA;gBACD,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE;oBAC7C,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,WAAW,KAAK,WAAW,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,aAAa,CAAC,mBAAmB,CAC/B,gCAAgC,EAChC,UAAC,gBAAkC;YACjC,OAAO,UAAC,WAAmB;gBACzB,IAAI,WAAW,KAAK,YAAY,IAAI,WAAW,KAAK,aAAa,EAAE;oBACjE,OAAO,iBAAiB,CAAA;iBACzB;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,YAAY,CACxB,cAAM,OAAA,IAAI,uCAA0B,CAAC,aAAa,CAAC,EAA7C,CAA6C,CACpD,CAAA;QACD,aAAa,CAAC,YAAY,CACxB,cAAM,OAAA,IAAI,0CAA6B,CAAC,aAAa,CAAC,EAAhD,CAAgD,CACvD,CAAA;IACH,CAAC;IACH,uBAAC;AAAD,CAAC,AA7FD,CAA8C,gBAAM,GA6FnD"}

package/dist/shared.js

@@ -1,96 +1,88 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.getUniqueModificationValues = getUniqueModificationValues;
-exports.getUniqueTagValues = getUniqueTagValues;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _util = require("@jbrowse/core/util");
-
-var _tracks = require("@jbrowse/core/util/tracks");
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function getUniqueTagValues(_x, _x2, _x3, _x4) {
-  return _getUniqueTagValues.apply(this, arguments);
-}
-
-function _getUniqueTagValues() {
-  _getUniqueTagValues = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(self, colorScheme, blocks, opts) {
-    var _getSession, rpcManager, adapterConfig, sessionId, values;
-
-    return _regenerator.default.wrap(function _callee$(_context) {
-      while (1) {
-        switch (_context.prev = _context.next) {
-          case 0:
-            _getSession = (0, _util.getSession)(self), rpcManager = _getSession.rpcManager;
-            adapterConfig = self.adapterConfig;
-            sessionId = (0, _tracks.getRpcSessionId)(self);
-            _context.next = 5;
-            return rpcManager.call((0, _tracks.getRpcSessionId)(self), 'PileupGetGlobalValueForTag', _objectSpread({
-              adapterConfig: adapterConfig,
-              tag: colorScheme.tag,
-              sessionId: sessionId,
-              regions: blocks.contentBlocks
-            }, opts));
-
-          case 5:
-            values = _context.sent;
-            return _context.abrupt("return", values);
-
-          case 7:
-          case "end":
-            return _context.stop();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
         }
-      }
-    }, _callee);
-  }));
-  return _getUniqueTagValues.apply(this, arguments);
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getUniqueModificationValues = exports.getUniqueTagValues = void 0;
+var util_1 = require("@jbrowse/core/util");
+var tracks_1 = require("@jbrowse/core/util/tracks");
+function getUniqueTagValues(self, colorScheme, blocks, opts) {
+    return __awaiter(this, void 0, void 0, function () {
+        var rpcManager, adapterConfig, sessionId, values;
+        return __generator(this, function (_a) {
+            switch (_a.label) {
+                case 0:
+                    rpcManager = (0, util_1.getSession)(self).rpcManager;
+                    adapterConfig = self.adapterConfig;
+                    sessionId = (0, tracks_1.getRpcSessionId)(self);
+                    return [4 /*yield*/, rpcManager.call((0, tracks_1.getRpcSessionId)(self), 'PileupGetGlobalValueForTag', __assign({ adapterConfig: adapterConfig, tag: colorScheme.tag, sessionId: sessionId, regions: blocks.contentBlocks }, opts))];
+                case 1:
+                    values = _a.sent();
+                    return [2 /*return*/, values];
+            }
+        });
+    });
 }
-
-function getUniqueModificationValues(_x5, _x6, _x7, _x8, _x9) {
-  return _getUniqueModificationValues.apply(this, arguments);
+exports.getUniqueTagValues = getUniqueTagValues;
+function getUniqueModificationValues(self, adapterConfig, colorScheme, blocks, opts) {
+    return __awaiter(this, void 0, void 0, function () {
+        var rpcManager, sessionId, values;
+        return __generator(this, function (_a) {
+            switch (_a.label) {
+                case 0:
+                    rpcManager = (0, util_1.getSession)(self).rpcManager;
+                    sessionId = (0, tracks_1.getRpcSessionId)(self);
+                    return [4 /*yield*/, rpcManager.call(sessionId, 'PileupGetVisibleModifications', __assign({ adapterConfig: adapterConfig, tag: colorScheme.tag, sessionId: sessionId, regions: blocks.contentBlocks }, opts))];
+                case 1:
+                    values = _a.sent();
+                    return [2 /*return*/, values];
+            }
+        });
+    });
 }
-
-function _getUniqueModificationValues() {
-  _getUniqueModificationValues = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(self, adapterConfig, colorScheme, blocks, opts) {
-    var _getSession2, rpcManager, sessionId, values;
-
-    return _regenerator.default.wrap(function _callee2$(_context2) {
-      while (1) {
-        switch (_context2.prev = _context2.next) {
-          case 0:
-            _getSession2 = (0, _util.getSession)(self), rpcManager = _getSession2.rpcManager;
-            sessionId = (0, _tracks.getRpcSessionId)(self);
-            _context2.next = 4;
-            return rpcManager.call(sessionId, 'PileupGetVisibleModifications', _objectSpread({
-              adapterConfig: adapterConfig,
-              tag: colorScheme.tag,
-              sessionId: sessionId,
-              regions: blocks.contentBlocks
-            }, opts));
-
-          case 4:
-            values = _context2.sent;
-            return _context2.abrupt("return", values);
-
-          case 6:
-          case "end":
-            return _context2.stop();
-        }
-      }
-    }, _callee2);
-  }));
-  return _getUniqueModificationValues.apply(this, arguments);
-}
+exports.getUniqueModificationValues = getUniqueModificationValues;
+//# sourceMappingURL=shared.js.map

package/dist/shared.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"shared.js","sourceRoot":"","sources":["../src/shared.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAEA,2CAA+C;AAC/C,oDAA2D;AAI3D,SAAsB,kBAAkB,CACtC,IAAkE,EAClE,WAA2C,EAC3C,MAAgB,EAChB,IAIC;;;;;;oBAEO,UAAU,GAAK,IAAA,iBAAU,EAAC,IAAI,CAAC,WAArB,CAAqB;oBAC/B,aAAa,GAAK,IAAI,cAAT,CAAS;oBACxB,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;oBACxB,qBAAM,UAAU,CAAC,IAAI,CAClC,IAAA,wBAAe,EAAC,IAAI,CAAC,EACrB,4BAA4B,aAE1B,aAAa,eAAA,EACb,GAAG,EAAE,WAAW,CAAC,GAAG,EACpB,SAAS,WAAA,EACT,OAAO,EAAE,MAAM,CAAC,aAAa,IAC1B,IAAI,EAEV,EAAA;;oBAVK,MAAM,GAAG,SAUd;oBACD,sBAAO,MAAkB,EAAA;;;;CAC1B;AAzBD,gDAyBC;AAED,SAAsB,2BAA2B,CAC/C,IAEC,EACD,aAAoC,EACpC,WAA2C,EAC3C,MAAgB,EAChB,IAIC;;;;;;oBAEO,UAAU,GAAK,IAAA,iBAAU,EAAC,IAAI,CAAC,WAArB,CAAqB;oBACjC,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;oBACxB,qBAAM,UAAU,CAAC,IAAI,CAClC,SAAS,EACT,+BAA+B,aAE7B,aAAa,eAAA,EACb,GAAG,EAAE,WAAW,CAAC,GAAG,EACpB,SAAS,WAAA,EACT,OAAO,EAAE,MAAM,CAAC,aAAa,IAC1B,IAAI,EAEV,EAAA;;oBAVK,MAAM,GAAG,SAUd;oBACD,sBAAO,MAAkB,EAAA;;;;CAC1B;AA3BD,kEA2BC"}