@jbrowse/plugin-alignments 1.7.9 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +192 -207
- package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js.map +1 -0
- package/dist/AlignmentsFeatureDetail/index.d.ts +28 -3
- package/dist/AlignmentsFeatureDetail/index.js +48 -55
- package/dist/AlignmentsFeatureDetail/index.js.map +1 -0
- package/dist/AlignmentsTrack/index.js +24 -32
- package/dist/AlignmentsTrack/index.js.map +1 -0
- package/dist/BamAdapter/BamAdapter.js +345 -585
- package/dist/BamAdapter/BamAdapter.js.map +1 -0
- package/dist/BamAdapter/BamSlightlyLazyFeature.js +143 -174
- package/dist/BamAdapter/BamSlightlyLazyFeature.js.map +1 -0
- package/dist/BamAdapter/MismatchParser.js +340 -416
- package/dist/BamAdapter/MismatchParser.js.map +1 -0
- package/dist/BamAdapter/configSchema.js +33 -46
- package/dist/BamAdapter/configSchema.js.map +1 -0
- package/dist/BamAdapter/index.js +36 -32
- package/dist/BamAdapter/index.js.map +1 -0
- package/dist/CramAdapter/CramAdapter.js +376 -644
- package/dist/CramAdapter/CramAdapter.js.map +1 -0
- package/dist/CramAdapter/CramSlightlyLazyFeature.js +374 -439
- package/dist/CramAdapter/CramSlightlyLazyFeature.js.map +1 -0
- package/dist/CramAdapter/CramTestAdapters.js +169 -227
- package/dist/CramAdapter/CramTestAdapters.js.map +1 -0
- package/dist/CramAdapter/configSchema.js +28 -38
- package/dist/CramAdapter/configSchema.js.map +1 -0
- package/dist/CramAdapter/index.js +37 -32
- package/dist/CramAdapter/index.js.map +1 -0
- package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js +91 -93
- package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js.map +1 -0
- package/dist/HtsgetBamAdapter/configSchema.js +19 -29
- package/dist/HtsgetBamAdapter/configSchema.js.map +1 -0
- package/dist/HtsgetBamAdapter/index.js +44 -38
- package/dist/HtsgetBamAdapter/index.js.map +1 -0
- package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +36 -65
- package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -0
- package/dist/LinearAlignmentsDisplay/index.js +22 -28
- package/dist/LinearAlignmentsDisplay/index.js.map +1 -0
- package/dist/LinearAlignmentsDisplay/models/configSchema.js +12 -23
- package/dist/LinearAlignmentsDisplay/models/configSchema.js.map +1 -0
- package/dist/LinearAlignmentsDisplay/models/model.d.ts +10 -10
- package/dist/LinearAlignmentsDisplay/models/model.js +257 -245
- package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -0
- package/dist/LinearPileupDisplay/components/ColorByModifications.js +98 -116
- package/dist/LinearPileupDisplay/components/ColorByModifications.js.map +1 -0
- package/dist/LinearPileupDisplay/components/ColorByTag.js +82 -91
- package/dist/LinearPileupDisplay/components/ColorByTag.js.map +1 -0
- package/dist/LinearPileupDisplay/components/FilterByTag.js +156 -192
- package/dist/LinearPileupDisplay/components/FilterByTag.js.map +1 -0
- package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js +15 -29
- package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map +1 -0
- package/dist/LinearPileupDisplay/components/SetFeatureHeight.js +79 -93
- package/dist/LinearPileupDisplay/components/SetFeatureHeight.js.map +1 -0
- package/dist/LinearPileupDisplay/components/SetMaxHeight.js +78 -81
- package/dist/LinearPileupDisplay/components/SetMaxHeight.js.map +1 -0
- package/dist/LinearPileupDisplay/components/SortByTag.js +80 -88
- package/dist/LinearPileupDisplay/components/SortByTag.js.map +1 -0
- package/dist/LinearPileupDisplay/configSchema.js +40 -42
- package/dist/LinearPileupDisplay/configSchema.js.map +1 -0
- package/dist/LinearPileupDisplay/index.js +21 -27
- package/dist/LinearPileupDisplay/index.js.map +1 -0
- package/dist/LinearPileupDisplay/model.d.ts +33 -20
- package/dist/LinearPileupDisplay/model.js +702 -716
- package/dist/LinearPileupDisplay/model.js.map +1 -0
- package/dist/LinearSNPCoverageDisplay/components/Tooltip.d.ts +1 -1
- package/dist/LinearSNPCoverageDisplay/components/Tooltip.js +105 -57
- package/dist/LinearSNPCoverageDisplay/components/Tooltip.js.map +1 -0
- package/dist/LinearSNPCoverageDisplay/index.js +21 -27
- package/dist/LinearSNPCoverageDisplay/index.js.map +1 -0
- package/dist/LinearSNPCoverageDisplay/models/configSchema.js +45 -55
- package/dist/LinearSNPCoverageDisplay/models/configSchema.js.map +1 -0
- package/dist/LinearSNPCoverageDisplay/models/model.d.ts +14 -12
- package/dist/LinearSNPCoverageDisplay/models/model.js +257 -230
- package/dist/LinearSNPCoverageDisplay/models/model.js.map +1 -0
- package/dist/NestedFrequencyTable.js +104 -139
- package/dist/NestedFrequencyTable.js.map +1 -0
- package/dist/PileupRPC/rpcMethods.js +199 -278
- package/dist/PileupRPC/rpcMethods.js.map +1 -0
- package/dist/PileupRenderer/PileupLayoutSession.js +56 -76
- package/dist/PileupRenderer/PileupLayoutSession.js.map +1 -0
- package/dist/PileupRenderer/PileupRenderer.d.ts +56 -11
- package/dist/PileupRenderer/PileupRenderer.js +942 -1134
- package/dist/PileupRenderer/PileupRenderer.js.map +1 -0
- package/dist/PileupRenderer/components/PileupRendering.d.ts +1 -1
- package/dist/PileupRenderer/components/PileupRendering.js +173 -253
- package/dist/PileupRenderer/components/PileupRendering.js.map +1 -0
- package/dist/PileupRenderer/configSchema.js +65 -71
- package/dist/PileupRenderer/configSchema.js.map +1 -0
- package/dist/PileupRenderer/index.js +17 -22
- package/dist/PileupRenderer/index.js.map +1 -0
- package/dist/PileupRenderer/sortUtil.js +83 -107
- package/dist/PileupRenderer/sortUtil.js.map +1 -0
- package/dist/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +2 -0
- package/dist/SNPCoverageAdapter/SNPCoverageAdapter.js +436 -586
- package/dist/SNPCoverageAdapter/SNPCoverageAdapter.js.map +1 -0
- package/dist/SNPCoverageAdapter/configSchema.js +10 -20
- package/dist/SNPCoverageAdapter/configSchema.js.map +1 -0
- package/dist/SNPCoverageAdapter/index.js +46 -41
- package/dist/SNPCoverageAdapter/index.js.map +1 -0
- package/dist/SNPCoverageRenderer/SNPCoverageRenderer.d.ts +1 -1
- package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js +265 -290
- package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -0
- package/dist/SNPCoverageRenderer/configSchema.js +30 -39
- package/dist/SNPCoverageRenderer/configSchema.js.map +1 -0
- package/dist/SNPCoverageRenderer/index.js +19 -30
- package/dist/SNPCoverageRenderer/index.js.map +1 -0
- package/dist/index.js +135 -152
- package/dist/index.js.map +1 -0
- package/dist/shared.js +84 -92
- package/dist/shared.js.map +1 -0
- package/dist/util.js +130 -121
- package/dist/util.js.map +1 -0
- package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.d.ts +6 -0
- package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +145 -0
- package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js.map +1 -0
- package/esm/AlignmentsFeatureDetail/index.d.ts +38 -0
- package/esm/AlignmentsFeatureDetail/index.js +23 -0
- package/esm/AlignmentsFeatureDetail/index.js.map +1 -0
- package/esm/AlignmentsTrack/index.d.ts +2 -0
- package/esm/AlignmentsTrack/index.js +23 -0
- package/esm/AlignmentsTrack/index.js.map +1 -0
- package/esm/BamAdapter/BamAdapter.d.ts +40 -0
- package/esm/BamAdapter/BamAdapter.js +173 -0
- package/esm/BamAdapter/BamAdapter.js.map +1 -0
- package/esm/BamAdapter/BamSlightlyLazyFeature.d.ts +33 -0
- package/esm/BamAdapter/BamSlightlyLazyFeature.js +107 -0
- package/esm/BamAdapter/BamSlightlyLazyFeature.js.map +1 -0
- package/esm/BamAdapter/MismatchParser.d.ts +25 -0
- package/esm/BamAdapter/MismatchParser.js +294 -0
- package/esm/BamAdapter/MismatchParser.js.map +1 -0
- package/esm/BamAdapter/configSchema.d.ts +2 -0
- package/esm/BamAdapter/configSchema.js +31 -0
- package/esm/BamAdapter/configSchema.js.map +1 -0
- package/esm/BamAdapter/index.d.ts +3 -0
- package/esm/BamAdapter/index.js +10 -0
- package/esm/BamAdapter/index.js.map +1 -0
- package/esm/CramAdapter/CramAdapter.d.ts +53 -0
- package/esm/CramAdapter/CramAdapter.js +228 -0
- package/esm/CramAdapter/CramAdapter.js.map +1 -0
- package/esm/CramAdapter/CramSlightlyLazyFeature.d.ts +49 -0
- package/esm/CramAdapter/CramSlightlyLazyFeature.js +349 -0
- package/esm/CramAdapter/CramSlightlyLazyFeature.js.map +1 -0
- package/esm/CramAdapter/CramTestAdapters.d.ts +29 -0
- package/esm/CramAdapter/CramTestAdapters.js +70 -0
- package/esm/CramAdapter/CramTestAdapters.js.map +1 -0
- package/esm/CramAdapter/configSchema.d.ts +3 -0
- package/esm/CramAdapter/configSchema.js +26 -0
- package/esm/CramAdapter/configSchema.js.map +1 -0
- package/esm/CramAdapter/index.d.ts +3 -0
- package/esm/CramAdapter/index.js +11 -0
- package/esm/CramAdapter/index.js.map +1 -0
- package/esm/HtsgetBamAdapter/HtsgetBamAdapter.d.ts +9 -0
- package/esm/HtsgetBamAdapter/HtsgetBamAdapter.js +27 -0
- package/esm/HtsgetBamAdapter/HtsgetBamAdapter.js.map +1 -0
- package/esm/HtsgetBamAdapter/configSchema.d.ts +2 -0
- package/esm/HtsgetBamAdapter/configSchema.js +17 -0
- package/esm/HtsgetBamAdapter/configSchema.js.map +1 -0
- package/esm/HtsgetBamAdapter/index.d.ts +3 -0
- package/esm/HtsgetBamAdapter/index.js +16 -0
- package/esm/HtsgetBamAdapter/index.js.map +1 -0
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.d.ts +7 -0
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +34 -0
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -0
- package/esm/LinearAlignmentsDisplay/index.d.ts +2 -0
- package/esm/LinearAlignmentsDisplay/index.js +19 -0
- package/esm/LinearAlignmentsDisplay/index.js.map +1 -0
- package/esm/LinearAlignmentsDisplay/models/configSchema.d.ts +4 -0
- package/esm/LinearAlignmentsDisplay/models/configSchema.js +12 -0
- package/esm/LinearAlignmentsDisplay/models/configSchema.js.map +1 -0
- package/esm/LinearAlignmentsDisplay/models/model.d.ts +105 -0
- package/esm/LinearAlignmentsDisplay/models/model.js +181 -0
- package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -0
- package/esm/LinearPileupDisplay/components/ColorByModifications.d.ts +14 -0
- package/esm/LinearPileupDisplay/components/ColorByModifications.js +71 -0
- package/esm/LinearPileupDisplay/components/ColorByModifications.js.map +1 -0
- package/esm/LinearPileupDisplay/components/ColorByTag.d.ts +9 -0
- package/esm/LinearPileupDisplay/components/ColorByTag.js +45 -0
- package/esm/LinearPileupDisplay/components/ColorByTag.js.map +1 -0
- package/esm/LinearPileupDisplay/components/FilterByTag.d.ts +18 -0
- package/esm/LinearPileupDisplay/components/FilterByTag.js +123 -0
- package/esm/LinearPileupDisplay/components/FilterByTag.js.map +1 -0
- package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts +13 -0
- package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js +13 -0
- package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map +1 -0
- package/esm/LinearPileupDisplay/components/SetFeatureHeight.d.ts +16 -0
- package/esm/LinearPileupDisplay/components/SetFeatureHeight.js +41 -0
- package/esm/LinearPileupDisplay/components/SetFeatureHeight.js.map +1 -0
- package/esm/LinearPileupDisplay/components/SetMaxHeight.d.ts +10 -0
- package/esm/LinearPileupDisplay/components/SetMaxHeight.js +43 -0
- package/esm/LinearPileupDisplay/components/SetMaxHeight.js.map +1 -0
- package/esm/LinearPileupDisplay/components/SortByTag.d.ts +9 -0
- package/esm/LinearPileupDisplay/components/SortByTag.js +43 -0
- package/esm/LinearPileupDisplay/components/SortByTag.js.map +1 -0
- package/esm/LinearPileupDisplay/configSchema.d.ts +6 -0
- package/esm/LinearPileupDisplay/configSchema.js +41 -0
- package/esm/LinearPileupDisplay/configSchema.js.map +1 -0
- package/esm/LinearPileupDisplay/index.d.ts +2 -0
- package/esm/LinearPileupDisplay/index.js +18 -0
- package/esm/LinearPileupDisplay/index.js.map +1 -0
- package/esm/LinearPileupDisplay/model.d.ts +332 -0
- package/esm/LinearPileupDisplay/model.js +576 -0
- package/esm/LinearPileupDisplay/model.js.map +1 -0
- package/esm/LinearSNPCoverageDisplay/components/Tooltip.d.ts +10 -0
- package/esm/LinearSNPCoverageDisplay/components/Tooltip.js +57 -0
- package/esm/LinearSNPCoverageDisplay/components/Tooltip.js.map +1 -0
- package/esm/LinearSNPCoverageDisplay/index.d.ts +2 -0
- package/esm/LinearSNPCoverageDisplay/index.js +18 -0
- package/esm/LinearSNPCoverageDisplay/index.js.map +1 -0
- package/esm/LinearSNPCoverageDisplay/models/configSchema.d.ts +2 -0
- package/esm/LinearSNPCoverageDisplay/models/configSchema.js +44 -0
- package/esm/LinearSNPCoverageDisplay/models/configSchema.js.map +1 -0
- package/esm/LinearSNPCoverageDisplay/models/model.d.ts +348 -0
- package/esm/LinearSNPCoverageDisplay/models/model.js +185 -0
- package/esm/LinearSNPCoverageDisplay/models/model.js.map +1 -0
- package/esm/NestedFrequencyTable.d.ts +14 -0
- package/esm/NestedFrequencyTable.js +101 -0
- package/esm/NestedFrequencyTable.js.map +1 -0
- package/esm/PileupRPC/rpcMethods.d.ts +34 -0
- package/esm/PileupRPC/rpcMethods.js +70 -0
- package/esm/PileupRPC/rpcMethods.js.map +1 -0
- package/esm/PileupRenderer/PileupLayoutSession.d.ts +32 -0
- package/esm/PileupRenderer/PileupLayoutSession.js +32 -0
- package/esm/PileupRenderer/PileupLayoutSession.js.map +1 -0
- package/esm/PileupRenderer/PileupRenderer.d.ts +182 -0
- package/esm/PileupRenderer/PileupRenderer.js +830 -0
- package/esm/PileupRenderer/PileupRenderer.js.map +1 -0
- package/esm/PileupRenderer/components/PileupRendering.d.ts +23 -0
- package/esm/PileupRenderer/components/PileupRendering.js +138 -0
- package/esm/PileupRenderer/components/PileupRendering.js.map +1 -0
- package/esm/PileupRenderer/configSchema.d.ts +2 -0
- package/esm/PileupRenderer/configSchema.js +64 -0
- package/esm/PileupRenderer/configSchema.js.map +1 -0
- package/esm/PileupRenderer/index.d.ts +2 -0
- package/esm/PileupRenderer/index.js +12 -0
- package/esm/PileupRenderer/index.js.map +1 -0
- package/esm/PileupRenderer/sortUtil.d.ts +8 -0
- package/esm/PileupRenderer/sortUtil.js +80 -0
- package/esm/PileupRenderer/sortUtil.js.map +1 -0
- package/esm/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +67 -0
- package/esm/SNPCoverageAdapter/SNPCoverageAdapter.js +259 -0
- package/esm/SNPCoverageAdapter/SNPCoverageAdapter.js.map +1 -0
- package/esm/SNPCoverageAdapter/configSchema.d.ts +3 -0
- package/esm/SNPCoverageAdapter/configSchema.js +6 -0
- package/esm/SNPCoverageAdapter/configSchema.js.map +1 -0
- package/esm/SNPCoverageAdapter/index.d.ts +3 -0
- package/esm/SNPCoverageAdapter/index.js +18 -0
- package/esm/SNPCoverageAdapter/index.js.map +1 -0
- package/esm/SNPCoverageRenderer/SNPCoverageRenderer.d.ts +20 -0
- package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js +185 -0
- package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -0
- package/esm/SNPCoverageRenderer/configSchema.d.ts +2 -0
- package/esm/SNPCoverageRenderer/configSchema.js +29 -0
- package/esm/SNPCoverageRenderer/configSchema.js.map +1 -0
- package/esm/SNPCoverageRenderer/index.d.ts +3 -0
- package/esm/SNPCoverageRenderer/index.js +14 -0
- package/esm/SNPCoverageRenderer/index.js.map +1 -0
- package/esm/index.d.ts +10 -0
- package/esm/index.js +91 -0
- package/esm/index.js.map +1 -0
- package/esm/shared.d.ts +25 -0
- package/esm/shared.js +28 -0
- package/esm/shared.js.map +1 -0
- package/esm/util.d.ts +19 -0
- package/esm/util.js +83 -0
- package/esm/util.js.map +1 -0
- package/package.json +19 -11
- package/src/AlignmentsFeatureDetail/AlignmentsFeatureDetail.tsx +16 -6
- package/src/AlignmentsFeatureDetail/__snapshots__/index.test.js.snap +321 -397
- package/src/AlignmentsFeatureDetail/index.ts +7 -17
- package/src/BamAdapter/MismatchParser.ts +1 -0
- package/src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx +3 -3
- package/src/LinearPileupDisplay/components/ColorByModifications.tsx +7 -7
- package/src/LinearPileupDisplay/components/ColorByTag.tsx +5 -5
- package/src/LinearPileupDisplay/components/FilterByTag.tsx +5 -5
- package/src/LinearPileupDisplay/components/LinearPileupDisplayBlurb.tsx +1 -1
- package/src/LinearPileupDisplay/components/SetFeatureHeight.tsx +9 -9
- package/src/LinearPileupDisplay/components/SetMaxHeight.tsx +5 -5
- package/src/LinearPileupDisplay/components/SortByTag.tsx +5 -5
- package/src/LinearPileupDisplay/model.ts +90 -32
- package/src/LinearSNPCoverageDisplay/components/Tooltip.tsx +44 -30
- package/src/LinearSNPCoverageDisplay/models/model.ts +25 -25
- package/src/PileupRenderer/PileupRenderer.tsx +399 -198
- package/src/PileupRenderer/components/PileupRendering.tsx +11 -11
- package/src/SNPCoverageAdapter/SNPCoverageAdapter.ts +5 -0
- package/src/SNPCoverageRenderer/SNPCoverageRenderer.ts +7 -5
- package/dist/AlignmentsFeatureDetail/index.test.js +0 -60
- package/dist/BamAdapter/BamAdapter.test.js +0 -177
- package/dist/BamAdapter/MismatchParser.test.js +0 -251
- package/dist/CramAdapter/CramAdapter.test.js +0 -138
- package/dist/LinearAlignmentsDisplay/models/configSchema.test.js +0 -83
- package/dist/LinearPileupDisplay/configSchema.test.js +0 -92
- package/dist/LinearSNPCoverageDisplay/models/configSchema.test.js +0 -62
- package/dist/PileupRenderer/components/PileupRendering.test.js +0 -36
- package/dist/declare.d.js +0 -1
- package/dist/index.test.js +0 -26
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track.addDisplayType(linearAlignmentsDisplay);
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|
35
|
-
return track;
|
|
36
|
-
});
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|
37
|
-
}
|
|
27
|
+
}
|
|
28
|
+
exports.default = register;
|
|
29
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
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|