@ahmed-g-gad/apothem 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +60 -0
- package/LICENSE +21 -0
- package/LICENSES/MIT.txt +18 -0
- package/LICENSES/PSF-2.0.txt +47 -0
- package/README.md +549 -0
- package/bin/README.md +37 -0
- package/bin/apothem.mjs +78 -0
- package/package.json +75 -0
- package/pyproject.toml +347 -0
- package/src/apothem/README.md +52 -0
- package/src/apothem/__init__.py +66 -0
- package/src/apothem/__main__.py +28 -0
- package/src/apothem/_vendor/.keep +0 -0
- package/src/apothem/_vendor/__init__.py +25 -0
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- package/src/apothem/_vendor/attr.LICENSE +21 -0
- package/src/apothem/_vendor/attrs/__init__.py +72 -0
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- package/src/apothem/_vendor/attrs/setters.py +3 -0
- package/src/apothem/_vendor/attrs/validators.py +3 -0
- package/src/apothem/_vendor/attrs.LICENSE +21 -0
- package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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- package/src/apothem/_vendor/jsonschema/benchmarks/json_schema_test_suite.py +12 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/nested_schemas.py +56 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/subcomponents.py +42 -0
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- package/src/apothem/_vendor/jsonschema/exceptions.py +490 -0
- package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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- package/src/apothem/_vendor/jsonschema.LICENSE +19 -0
- package/src/apothem/_vendor/jsonschema_specifications/__init__.py +12 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/vocabularies/applicator +56 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
- package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
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- package/src/apothem/_vendor/referencing.LICENSE +19 -0
- package/src/apothem/_vendor/rpds/__init__.py +251 -0
- package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
- package/src/apothem/_vendor/typing_extensions.py +4317 -0
- package/src/apothem/_vendor/vendor.txt +22 -0
- package/src/apothem/_vendor/yaml/__init__.py +389 -0
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- package/src/apothem/_vendor/yaml/constructor.py +748 -0
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- package/src/apothem/_vendor/yaml/dumper.py +61 -0
- package/src/apothem/_vendor/yaml/emitter.py +1137 -0
- package/src/apothem/_vendor/yaml/error.py +74 -0
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- package/src/apothem/agents/README.md +60 -0
- package/src/apothem/agents/codebase-explorer.md +91 -0
- package/src/apothem/agents/convention-auditor.md +93 -0
- package/src/apothem/agents/dependency-auditor.md +97 -0
- package/src/apothem/agents/fact-checker.md +84 -0
- package/src/apothem/agents/mcp-builder.md +86 -0
- package/src/apothem/agents/memory-auditor.md +93 -0
- package/src/apothem/agents/prompt-evaluator.md +87 -0
- package/src/apothem/agents/quality-gate.md +103 -0
- package/src/apothem/agents/refactor-surgeon.md +74 -0
- package/src/apothem/agents/research-scout.md +73 -0
- package/src/apothem/agents/security-scanner.md +83 -0
- package/src/apothem/agents/test-runner.md +84 -0
- package/src/apothem/audit/README.md +73 -0
- package/src/apothem/audit/_scan_lib.py +182 -0
- package/src/apothem/audit/analyze_graph.py +260 -0
- package/src/apothem/audit/build_capability_graph.py +607 -0
- package/src/apothem/audit/build_inventory.py +657 -0
- package/src/apothem/audit/build_plans_provenance.py +997 -0
- package/src/apothem/audit/check_links.py +389 -0
- package/src/apothem/audit/classify_artifacts.py +381 -0
- package/src/apothem/audit/deprecated-tokens.txt +10 -0
- package/src/apothem/audit/execute_plans_migration.py +491 -0
- package/src/apothem/audit/known-projects.txt +15 -0
- package/src/apothem/audit/render_capability_index.py +467 -0
- package/src/apothem/audit/render_inventory.py +405 -0
- package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
- package/src/apothem/audit/scan_ai_surfaces_coarse.py +261 -0
- package/src/apothem/audit/scan_drift_features.py +143 -0
- package/src/apothem/audit/scan_frontmatter.py +293 -0
- package/src/apothem/audit/scan_header_coverage.py +1134 -0
- package/src/apothem/audit/scan_plan_leakage.py +540 -0
- package/src/apothem/audit/scan_plans_discipline.py +188 -0
- package/src/apothem/audit/scan_secrets_pii.py +245 -0
- package/src/apothem/audit/scan_stale_tokens.py +296 -0
- package/src/apothem/audit/synthesize_drift.py +205 -0
- package/src/apothem/benchmarks/README.md +33 -0
- package/src/apothem/benchmarks/__init__.py +3 -0
- package/src/apothem/benchmarks/bench_agents.py +63 -0
- package/src/apothem/benchmarks/bench_hooks.py +93 -0
- package/src/apothem/benchmarks/bench_install.py +58 -0
- package/src/apothem/benchmarks/bench_tests.py +93 -0
- package/src/apothem/benchmarks/bench_validate_ecosystem.py +84 -0
- package/src/apothem/cli/README.md +33 -0
- package/src/apothem/cli/__init__.py +229 -0
- package/src/apothem/cli/_cmd_completion.py +88 -0
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- package/src/apothem/cli/_common_flags.py +90 -0
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- package/src/apothem/cli/_json_formatter.py +21 -0
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- package/src/apothem/commands/research-sources.md +266 -0
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- package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
- package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
- package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
- package/src/apothem/skills/document-authoring/SKILL.md +118 -0
- package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
- package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
- package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
- package/src/apothem/skills/eval-harness/SKILL.md +88 -0
- package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
- package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
- package/src/apothem/skills/plan-suite/SKILL.md +118 -0
- package/src/apothem/skills/plan-suite/master_template.md +1324 -0
- package/src/apothem/skills/projectify/SKILL.md +117 -0
- package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
- package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
- package/src/apothem/skills/research-suite/SKILL.md +170 -0
- package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
- package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
- package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
- package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
- package/src/apothem/skills/research-suite/research_template.md +476 -0
- package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
- package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
- package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
- package/src/apothem/skills/test-authoring/SKILL.md +85 -0
- package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
- package/src/apothem/skills/workflow/SKILL.md +139 -0
- package/src/apothem/statuslines/README.md +26 -0
- package/src/apothem/statuslines/__init__.py +20 -0
- package/src/apothem/statuslines/conformity.json +5 -0
- package/src/apothem/statuslines/render.py +334 -0
- package/src/apothem/statuslines/statusline.md +50 -0
- package/src/apothem/templates/README.md +43 -0
- package/src/apothem/templates/agents-md-template.md +80 -0
- package/src/apothem/templates/consideration-log.md +39 -0
- package/src/apothem/templates/expertise-gap-log.md +56 -0
- package/src/apothem/templates/master-index-template.md +93 -0
- package/src/apothem/templates/potency-map.md +53 -0
- package/src/apothem/templates/preservation-audit.md +60 -0
- package/src/apothem/templates/question-resolution-audit.md +52 -0
- package/src/apothem/templates/trace-matrix-template.md +77 -0
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# SPDX-License-Identifier: MIT
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from functools import total_ordering
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@total_ordering
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A version object that can be compared to tuple of length 1--4:
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False
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releaselevel = attrib(type=str)
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@classmethod
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"""
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Parse *s* and return a _VersionInfo.
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return cls(
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year=int(v[0]), minor=int(v[1]), micro=int(v[2]), releaselevel=v[3]
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)
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Returns a possibly transformed *other* and ourselves as a tuple of
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return us < them
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# SPDX-License-Identifier: MIT
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"""
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Commonly useful converters.
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__all__ = [
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"optional",
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"pipe",
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any.
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converter (typing.Callable):
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return None
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return converter(val)
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xtr = _AnnotationExtractor(converter)
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optional_converter.__annotations__["val"] = typing.Optional[t]
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rt = xtr.get_return_type()
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def default_if_none(default=NOTHING, factory=None):
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A converter that allows to replace `None` values by *default* or the result
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of *factory*.
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is passed.
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ValueError:
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``takes_self=True``.
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def to_bool(val):
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"""
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Convert "boolean" strings (for example, from environment variables) to real
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booleans.
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Values mapping to `True`:
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- ``True``
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Values mapping to `False`:
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from typing import Callable, Any, overload
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from attrs import _ConverterType, _CallableConverterType
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@overload
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def pipe(*validators: _CallableConverterType) -> _CallableConverterType: ...
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@overload
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def pipe(*validators: _ConverterType) -> _ConverterType: ...
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@overload
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def optional(converter: _CallableConverterType) -> _CallableConverterType: ...
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@overload
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def optional(converter: _ConverterType) -> _ConverterType: ...
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@overload
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def default_if_none(default: Any) -> _CallableConverterType: ...
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@overload
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def default_if_none(
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*, factory: Callable[[], Any]
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) -> _CallableConverterType: ...
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def to_bool(val: str | int | bool) -> bool: ...
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from __future__ import annotations
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class FrozenError(AttributeError):
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"""
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A frozen/immutable instance or attribute have been attempted to be
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modified.
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It mirrors the behavior of ``namedtuples`` by using the same error message
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and subclassing `AttributeError`.
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"""
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def __init__(self):
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msg = "can't set attribute"
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super().__init__(msg)
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self.msg = msg
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class FrozenInstanceError(FrozenError):
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"""
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A frozen instance has been attempted to be modified.
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.. versionadded:: 16.1.0
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"""
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class FrozenAttributeError(FrozenError):
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"""
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A frozen attribute has been attempted to be modified.
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.. versionadded:: 20.1.0
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"""
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class AttrsAttributeNotFoundError(ValueError):
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"""
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An *attrs* function couldn't find an attribute that the user asked for.
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+
.. versionadded:: 16.2.0
|
|
44
|
+
"""
|
|
45
|
+
|
|
46
|
+
|
|
47
|
+
class NotAnAttrsClassError(ValueError):
|
|
48
|
+
"""
|
|
49
|
+
A non-*attrs* class has been passed into an *attrs* function.
|
|
50
|
+
|
|
51
|
+
.. versionadded:: 16.2.0
|
|
52
|
+
"""
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
class DefaultAlreadySetError(RuntimeError):
|
|
56
|
+
"""
|
|
57
|
+
A default has been set when defining the field and is attempted to be reset
|
|
58
|
+
using the decorator.
|
|
59
|
+
|
|
60
|
+
.. versionadded:: 17.1.0
|
|
61
|
+
"""
|
|
62
|
+
|
|
63
|
+
|
|
64
|
+
class UnannotatedAttributeError(RuntimeError):
|
|
65
|
+
"""
|
|
66
|
+
A class with ``auto_attribs=True`` has a field without a type annotation.
|
|
67
|
+
|
|
68
|
+
.. versionadded:: 17.3.0
|
|
69
|
+
"""
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
class PythonTooOldError(RuntimeError):
|
|
73
|
+
"""
|
|
74
|
+
It was attempted to use an *attrs* feature that requires a newer Python
|
|
75
|
+
version.
|
|
76
|
+
|
|
77
|
+
.. versionadded:: 18.2.0
|
|
78
|
+
"""
|
|
79
|
+
|
|
80
|
+
|
|
81
|
+
class NotCallableError(TypeError):
|
|
82
|
+
"""
|
|
83
|
+
A field requiring a callable has been set with a value that is not
|
|
84
|
+
callable.
|
|
85
|
+
|
|
86
|
+
.. versionadded:: 19.2.0
|
|
87
|
+
"""
|
|
88
|
+
|
|
89
|
+
def __init__(self, msg, value):
|
|
90
|
+
super(TypeError, self).__init__(msg, value)
|
|
91
|
+
self.msg = msg
|
|
92
|
+
self.value = value
|
|
93
|
+
|
|
94
|
+
def __str__(self):
|
|
95
|
+
return str(self.msg)
|
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
from typing import Any
|
|
2
|
+
|
|
3
|
+
class FrozenError(AttributeError):
|
|
4
|
+
msg: str = ...
|
|
5
|
+
|
|
6
|
+
class FrozenInstanceError(FrozenError): ...
|
|
7
|
+
class FrozenAttributeError(FrozenError): ...
|
|
8
|
+
class AttrsAttributeNotFoundError(ValueError): ...
|
|
9
|
+
class NotAnAttrsClassError(ValueError): ...
|
|
10
|
+
class DefaultAlreadySetError(RuntimeError): ...
|
|
11
|
+
class UnannotatedAttributeError(RuntimeError): ...
|
|
12
|
+
class PythonTooOldError(RuntimeError): ...
|
|
13
|
+
|
|
14
|
+
class NotCallableError(TypeError):
|
|
15
|
+
msg: str = ...
|
|
16
|
+
value: Any = ...
|
|
17
|
+
def __init__(self, msg: str, value: Any) -> None: ...
|
|
@@ -0,0 +1,72 @@
|
|
|
1
|
+
# SPDX-License-Identifier: MIT
|
|
2
|
+
|
|
3
|
+
"""
|
|
4
|
+
Commonly useful filters for `attrs.asdict` and `attrs.astuple`.
|
|
5
|
+
"""
|
|
6
|
+
|
|
7
|
+
from ._make import Attribute
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
def _split_what(what):
|
|
11
|
+
"""
|
|
12
|
+
Returns a tuple of `frozenset`s of classes and attributes.
|
|
13
|
+
"""
|
|
14
|
+
return (
|
|
15
|
+
frozenset(cls for cls in what if isinstance(cls, type)),
|
|
16
|
+
frozenset(cls for cls in what if isinstance(cls, str)),
|
|
17
|
+
frozenset(cls for cls in what if isinstance(cls, Attribute)),
|
|
18
|
+
)
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
def include(*what):
|
|
22
|
+
"""
|
|
23
|
+
Create a filter that only allows *what*.
|
|
24
|
+
|
|
25
|
+
Args:
|
|
26
|
+
what (list[type, str, attrs.Attribute]):
|
|
27
|
+
What to include. Can be a type, a name, or an attribute.
|
|
28
|
+
|
|
29
|
+
Returns:
|
|
30
|
+
Callable:
|
|
31
|
+
A callable that can be passed to `attrs.asdict`'s and
|
|
32
|
+
`attrs.astuple`'s *filter* argument.
|
|
33
|
+
|
|
34
|
+
.. versionchanged:: 23.1.0 Accept strings with field names.
|
|
35
|
+
"""
|
|
36
|
+
cls, names, attrs = _split_what(what)
|
|
37
|
+
|
|
38
|
+
def include_(attribute, value):
|
|
39
|
+
return (
|
|
40
|
+
value.__class__ in cls
|
|
41
|
+
or attribute.name in names
|
|
42
|
+
or attribute in attrs
|
|
43
|
+
)
|
|
44
|
+
|
|
45
|
+
return include_
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
def exclude(*what):
|
|
49
|
+
"""
|
|
50
|
+
Create a filter that does **not** allow *what*.
|
|
51
|
+
|
|
52
|
+
Args:
|
|
53
|
+
what (list[type, str, attrs.Attribute]):
|
|
54
|
+
What to exclude. Can be a type, a name, or an attribute.
|
|
55
|
+
|
|
56
|
+
Returns:
|
|
57
|
+
Callable:
|
|
58
|
+
A callable that can be passed to `attrs.asdict`'s and
|
|
59
|
+
`attrs.astuple`'s *filter* argument.
|
|
60
|
+
|
|
61
|
+
.. versionchanged:: 23.3.0 Accept field name string as input argument
|
|
62
|
+
"""
|
|
63
|
+
cls, names, attrs = _split_what(what)
|
|
64
|
+
|
|
65
|
+
def exclude_(attribute, value):
|
|
66
|
+
return not (
|
|
67
|
+
value.__class__ in cls
|
|
68
|
+
or attribute.name in names
|
|
69
|
+
or attribute in attrs
|
|
70
|
+
)
|
|
71
|
+
|
|
72
|
+
return exclude_
|
|
File without changes
|
|
@@ -0,0 +1,79 @@
|
|
|
1
|
+
# SPDX-License-Identifier: MIT
|
|
2
|
+
|
|
3
|
+
"""
|
|
4
|
+
Commonly used hooks for on_setattr.
|
|
5
|
+
"""
|
|
6
|
+
|
|
7
|
+
from . import _config
|
|
8
|
+
from .exceptions import FrozenAttributeError
|
|
9
|
+
|
|
10
|
+
|
|
11
|
+
def pipe(*setters):
|
|
12
|
+
"""
|
|
13
|
+
Run all *setters* and return the return value of the last one.
|
|
14
|
+
|
|
15
|
+
.. versionadded:: 20.1.0
|
|
16
|
+
"""
|
|
17
|
+
|
|
18
|
+
def wrapped_pipe(instance, attrib, new_value):
|
|
19
|
+
rv = new_value
|
|
20
|
+
|
|
21
|
+
for setter in setters:
|
|
22
|
+
rv = setter(instance, attrib, rv)
|
|
23
|
+
|
|
24
|
+
return rv
|
|
25
|
+
|
|
26
|
+
return wrapped_pipe
|
|
27
|
+
|
|
28
|
+
|
|
29
|
+
def frozen(_, __, ___):
|
|
30
|
+
"""
|
|
31
|
+
Prevent an attribute to be modified.
|
|
32
|
+
|
|
33
|
+
.. versionadded:: 20.1.0
|
|
34
|
+
"""
|
|
35
|
+
raise FrozenAttributeError
|
|
36
|
+
|
|
37
|
+
|
|
38
|
+
def validate(instance, attrib, new_value):
|
|
39
|
+
"""
|
|
40
|
+
Run *attrib*'s validator on *new_value* if it has one.
|
|
41
|
+
|
|
42
|
+
.. versionadded:: 20.1.0
|
|
43
|
+
"""
|
|
44
|
+
if _config._run_validators is False:
|
|
45
|
+
return new_value
|
|
46
|
+
|
|
47
|
+
v = attrib.validator
|
|
48
|
+
if not v:
|
|
49
|
+
return new_value
|
|
50
|
+
|
|
51
|
+
v(instance, attrib, new_value)
|
|
52
|
+
|
|
53
|
+
return new_value
|
|
54
|
+
|
|
55
|
+
|
|
56
|
+
def convert(instance, attrib, new_value):
|
|
57
|
+
"""
|
|
58
|
+
Run *attrib*'s converter -- if it has one -- on *new_value* and return the
|
|
59
|
+
result.
|
|
60
|
+
|
|
61
|
+
.. versionadded:: 20.1.0
|
|
62
|
+
"""
|
|
63
|
+
c = attrib.converter
|
|
64
|
+
if c:
|
|
65
|
+
# This can be removed once we drop 3.8 and use attrs.Converter instead.
|
|
66
|
+
from ._make import Converter
|
|
67
|
+
|
|
68
|
+
if not isinstance(c, Converter):
|
|
69
|
+
return c(new_value)
|
|
70
|
+
|
|
71
|
+
return c(new_value, instance, attrib)
|
|
72
|
+
|
|
73
|
+
return new_value
|
|
74
|
+
|
|
75
|
+
|
|
76
|
+
# Sentinel for disabling class-wide *on_setattr* hooks for certain attributes.
|
|
77
|
+
# Sphinx's autodata stopped working, so the docstring is inlined in the API
|
|
78
|
+
# docs.
|
|
79
|
+
NO_OP = object()
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
from typing import Any, NewType, NoReturn, TypeVar
|
|
2
|
+
|
|
3
|
+
from . import Attribute
|
|
4
|
+
from attrs import _OnSetAttrType
|
|
5
|
+
|
|
6
|
+
_T = TypeVar("_T")
|
|
7
|
+
|
|
8
|
+
def frozen(
|
|
9
|
+
instance: Any, attribute: Attribute[Any], new_value: Any
|
|
10
|
+
) -> NoReturn: ...
|
|
11
|
+
def pipe(*setters: _OnSetAttrType) -> _OnSetAttrType: ...
|
|
12
|
+
def validate(instance: Any, attribute: Attribute[_T], new_value: _T) -> _T: ...
|
|
13
|
+
|
|
14
|
+
# convert is allowed to return Any, because they can be chained using pipe.
|
|
15
|
+
def convert(
|
|
16
|
+
instance: Any, attribute: Attribute[Any], new_value: Any
|
|
17
|
+
) -> Any: ...
|
|
18
|
+
|
|
19
|
+
_NoOpType = NewType("_NoOpType", object)
|
|
20
|
+
NO_OP: _NoOpType
|