@ahmed-g-gad/apothem 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +60 -0
- package/LICENSE +21 -0
- package/LICENSES/MIT.txt +18 -0
- package/LICENSES/PSF-2.0.txt +47 -0
- package/README.md +549 -0
- package/bin/README.md +37 -0
- package/bin/apothem.mjs +78 -0
- package/package.json +75 -0
- package/pyproject.toml +347 -0
- package/src/apothem/README.md +52 -0
- package/src/apothem/__init__.py +66 -0
- package/src/apothem/__main__.py +28 -0
- package/src/apothem/_vendor/.keep +0 -0
- package/src/apothem/_vendor/__init__.py +25 -0
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- package/src/apothem/_vendor/attr.LICENSE +21 -0
- package/src/apothem/_vendor/attrs/__init__.py +72 -0
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- package/src/apothem/_vendor/attrs/setters.py +3 -0
- package/src/apothem/_vendor/attrs/validators.py +3 -0
- package/src/apothem/_vendor/attrs.LICENSE +21 -0
- package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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- package/src/apothem/_vendor/jsonschema/benchmarks/json_schema_test_suite.py +12 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/nested_schemas.py +56 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/subcomponents.py +42 -0
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- package/src/apothem/_vendor/jsonschema/exceptions.py +490 -0
- package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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- package/src/apothem/_vendor/jsonschema.LICENSE +19 -0
- package/src/apothem/_vendor/jsonschema_specifications/__init__.py +12 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/vocabularies/applicator +56 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
- package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
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- package/src/apothem/_vendor/referencing.LICENSE +19 -0
- package/src/apothem/_vendor/rpds/__init__.py +251 -0
- package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
- package/src/apothem/_vendor/typing_extensions.py +4317 -0
- package/src/apothem/_vendor/vendor.txt +22 -0
- package/src/apothem/_vendor/yaml/__init__.py +389 -0
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- package/src/apothem/_vendor/yaml/constructor.py +748 -0
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- package/src/apothem/_vendor/yaml/dumper.py +61 -0
- package/src/apothem/_vendor/yaml/emitter.py +1137 -0
- package/src/apothem/_vendor/yaml/error.py +74 -0
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- package/src/apothem/agents/README.md +60 -0
- package/src/apothem/agents/codebase-explorer.md +91 -0
- package/src/apothem/agents/convention-auditor.md +93 -0
- package/src/apothem/agents/dependency-auditor.md +97 -0
- package/src/apothem/agents/fact-checker.md +84 -0
- package/src/apothem/agents/mcp-builder.md +86 -0
- package/src/apothem/agents/memory-auditor.md +93 -0
- package/src/apothem/agents/prompt-evaluator.md +87 -0
- package/src/apothem/agents/quality-gate.md +103 -0
- package/src/apothem/agents/refactor-surgeon.md +74 -0
- package/src/apothem/agents/research-scout.md +73 -0
- package/src/apothem/agents/security-scanner.md +83 -0
- package/src/apothem/agents/test-runner.md +84 -0
- package/src/apothem/audit/README.md +73 -0
- package/src/apothem/audit/_scan_lib.py +182 -0
- package/src/apothem/audit/analyze_graph.py +260 -0
- package/src/apothem/audit/build_capability_graph.py +607 -0
- package/src/apothem/audit/build_inventory.py +657 -0
- package/src/apothem/audit/build_plans_provenance.py +997 -0
- package/src/apothem/audit/check_links.py +389 -0
- package/src/apothem/audit/classify_artifacts.py +381 -0
- package/src/apothem/audit/deprecated-tokens.txt +10 -0
- package/src/apothem/audit/execute_plans_migration.py +491 -0
- package/src/apothem/audit/known-projects.txt +15 -0
- package/src/apothem/audit/render_capability_index.py +467 -0
- package/src/apothem/audit/render_inventory.py +405 -0
- package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
- package/src/apothem/audit/scan_ai_surfaces_coarse.py +261 -0
- package/src/apothem/audit/scan_drift_features.py +143 -0
- package/src/apothem/audit/scan_frontmatter.py +293 -0
- package/src/apothem/audit/scan_header_coverage.py +1134 -0
- package/src/apothem/audit/scan_plan_leakage.py +540 -0
- package/src/apothem/audit/scan_plans_discipline.py +188 -0
- package/src/apothem/audit/scan_secrets_pii.py +245 -0
- package/src/apothem/audit/scan_stale_tokens.py +296 -0
- package/src/apothem/audit/synthesize_drift.py +205 -0
- package/src/apothem/benchmarks/README.md +33 -0
- package/src/apothem/benchmarks/__init__.py +3 -0
- package/src/apothem/benchmarks/bench_agents.py +63 -0
- package/src/apothem/benchmarks/bench_hooks.py +93 -0
- package/src/apothem/benchmarks/bench_install.py +58 -0
- package/src/apothem/benchmarks/bench_tests.py +93 -0
- package/src/apothem/benchmarks/bench_validate_ecosystem.py +84 -0
- package/src/apothem/cli/README.md +33 -0
- package/src/apothem/cli/__init__.py +229 -0
- package/src/apothem/cli/_cmd_completion.py +88 -0
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- package/src/apothem/cli/_common_flags.py +90 -0
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- package/src/apothem/cli/_json_formatter.py +21 -0
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- package/src/apothem/commands/research-sources.md +266 -0
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- package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
- package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
- package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
- package/src/apothem/skills/document-authoring/SKILL.md +118 -0
- package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
- package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
- package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
- package/src/apothem/skills/eval-harness/SKILL.md +88 -0
- package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
- package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
- package/src/apothem/skills/plan-suite/SKILL.md +118 -0
- package/src/apothem/skills/plan-suite/master_template.md +1324 -0
- package/src/apothem/skills/projectify/SKILL.md +117 -0
- package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
- package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
- package/src/apothem/skills/research-suite/SKILL.md +170 -0
- package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
- package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
- package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
- package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
- package/src/apothem/skills/research-suite/research_template.md +476 -0
- package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
- package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
- package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
- package/src/apothem/skills/test-authoring/SKILL.md +85 -0
- package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
- package/src/apothem/skills/workflow/SKILL.md +139 -0
- package/src/apothem/statuslines/README.md +26 -0
- package/src/apothem/statuslines/__init__.py +20 -0
- package/src/apothem/statuslines/conformity.json +5 -0
- package/src/apothem/statuslines/render.py +334 -0
- package/src/apothem/statuslines/statusline.md +50 -0
- package/src/apothem/templates/README.md +43 -0
- package/src/apothem/templates/agents-md-template.md +80 -0
- package/src/apothem/templates/consideration-log.md +39 -0
- package/src/apothem/templates/expertise-gap-log.md +56 -0
- package/src/apothem/templates/master-index-template.md +93 -0
- package/src/apothem/templates/potency-map.md +53 -0
- package/src/apothem/templates/preservation-audit.md +60 -0
- package/src/apothem/templates/question-resolution-audit.md +52 -0
- package/src/apothem/templates/trace-matrix-template.md +77 -0
package/CHANGELOG.md
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<!-- SPDX-License-Identifier: MIT -->
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# Changelog — Apothem
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All notable changes to this project are documented in this file.
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This changelog follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/)
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and the project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [0.1.1] - 2026-06-27
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The first release of Apothem — a host-agnostic configuration manager that
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authors one shared profile and materializes it into the native configuration of
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seventeen assistant harnesses behind a conformity governance gate and signed,
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reproducible releases.
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### Added
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- **Shared-profile model.** One governed profile at
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`~/.config/apothem/profile.yaml` is the single source for the synced unit —
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rules, slash-commands, skills, hooks, output-styles, settings, schemas, docs,
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and MCP servers — plus the wrapped-workflow orchestrators that drive whole
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missions end to end (`/plan`, `/research`, `/audit`, and the `/fortress`
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closed-loop production-hardening pipeline).
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- **Seventeen harness adapters.** Antigravity, Claude Code, CodeBuddy, Codex,
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Cursor, Gemini CLI, GitHub Copilot, Hermes, Kimi Code, Kiro, Open-Claw,
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OpenCode, Qwen Code, Trae, Windsurf, Zed, and GLM (Z.ai) each install, verify,
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update, and uninstall through a shared, reversible adapter contract that emits
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the tool's native file layout. Installs back up existing targets to
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`~/.apothem/backups/` before replacement; uninstalls reverse cleanly with zero
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orphans.
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- **CLI.** `quickstart`, `install`, `uninstall`, `update`, `verify`, `status`,
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`diff`, `rollback`, `harnesses`, `profile`, `doctor`, and `completion`
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commands, with dry-run reporting, drift detection, structured JSON output
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(`--format json`), and per-harness status. The engine is self-contained — the
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source tree carries its vendored dependencies and runs from a checkout as
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`python -m apothem` on system Python 3.10+.
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- **Conformity governance gate.** A pre-emission validator suite checks the
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synced unit — authorship headers, frontmatter contracts, naming, determinism,
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cross-references, and harness capability coverage — before any surface is
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materialized.
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- **Multiple install paths.** The Claude Code plugin
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(`/plugin marketplace add ahmed-g-gad/apothem`), a Gemini CLI extension, a
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Qwen Code extension, a Codex plugin, a VS Code-family extension on the Visual
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Studio Marketplace, the npm shim
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(`npx @ahmed-g-gad/apothem <command>`), and the one-shot POSIX and PowerShell
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installers (`install.sh` / `install.ps1`) with matching update and uninstall
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scripts.
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### Security
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- Every release attaches an sdist, a wheel, SHA-256 checksums, Sigstore cosign
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signatures, SLSA build provenance, and a CycloneDX SBOM as verification
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evidence; the npm package is published with npm provenance via OIDC trusted
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publishing.
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- The release pipeline gates every change on lint, tests, type checks, a
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documentation build, CodeQL, OpenSSF Scorecard, dependency audit, and
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supply-chain checks before publication.
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[0.1.1]: https://github.com/Ahmed-G-Gad/apothem/releases/tag/v0.1.1
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package/LICENSE
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MIT License
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Copyright (c) 2026 Ahmed G. Gad
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OF OR OTHER DEALINGS IN
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THE SOFTWARE.
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package/LICENSES/MIT.txt
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MIT License
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Copyright (c) <year> <copyright holders>
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Permission is hereby granted, free of charge, to any person obtaining a copy of this software and
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associated documentation files (the "Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the
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following conditions:
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The above copyright notice and this permission notice shall be included in all copies or substantial
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portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT
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LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO
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EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
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IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE
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USE OR OTHER DEALINGS IN THE SOFTWARE.
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PYTHON SOFTWARE FOUNDATION LICENSE VERSION 2
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1. This LICENSE AGREEMENT is between the Python Software Foundation
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("PSF"), and the Individual or Organization ("Licensee") accessing and
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otherwise using this software ("Python") in source or binary form and
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its associated documentation.
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2. Subject to the terms and conditions of this License Agreement, PSF hereby
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grants Licensee a nonexclusive, royalty-free, world-wide license to reproduce,
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analyze, test, perform and/or display publicly, prepare derivative works,
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distribute, and otherwise use Python alone or in any derivative version,
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provided, however, that PSF's License Agreement and PSF's notice of copyright,
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i.e., "Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010,
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2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Python Software Foundation;
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All Rights Reserved" are retained in Python alone or in any derivative version
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prepared by Licensee.
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3. In the event Licensee prepares a derivative work that is based on
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or incorporates Python or any part thereof, and wants to make
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the derivative work available to others as provided herein, then
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Licensee hereby agrees to include in any such work a brief summary of
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the changes made to Python.
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4. PSF is making Python available to Licensee on an "AS IS"
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basis. PSF MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR
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IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, PSF MAKES NO AND
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DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS
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FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF PYTHON WILL NOT
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INFRINGE ANY THIRD PARTY RIGHTS.
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5. PSF SHALL NOT BE LIABLE TO LICENSEE OR ANY OTHER USERS OF PYTHON
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FOR ANY INCIDENTAL, SPECIAL, OR CONSEQUENTIAL DAMAGES OR LOSS AS
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A RESULT OF MODIFYING, DISTRIBUTING, OR OTHERWISE USING PYTHON,
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OR ANY DERIVATIVE THEREOF, EVEN IF ADVISED OF THE POSSIBILITY THEREOF.
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6. This License Agreement will automatically terminate upon a material
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breach of its terms and conditions.
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7. Nothing in this License Agreement shall be deemed to create any
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relationship of agency, partnership, or joint venture between PSF and
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Licensee. This License Agreement does not grant permission to use PSF
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trademarks or trade name in a trademark sense to endorse or promote
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products or services of Licensee, or any third party.
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8. By copying, installing or otherwise using Python, Licensee
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agrees to be bound by the terms and conditions of this License
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Agreement.
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