@ahmed-g-gad/apothem 0.1.1

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Files changed (674) hide show
  1. package/CHANGELOG.md +60 -0
  2. package/LICENSE +21 -0
  3. package/LICENSES/MIT.txt +18 -0
  4. package/LICENSES/PSF-2.0.txt +47 -0
  5. package/README.md +549 -0
  6. package/bin/README.md +37 -0
  7. package/bin/apothem.mjs +78 -0
  8. package/package.json +75 -0
  9. package/pyproject.toml +347 -0
  10. package/src/apothem/README.md +52 -0
  11. package/src/apothem/__init__.py +66 -0
  12. package/src/apothem/__main__.py +28 -0
  13. package/src/apothem/_vendor/.keep +0 -0
  14. package/src/apothem/_vendor/__init__.py +25 -0
  15. package/src/apothem/_vendor/attr/__init__.py +104 -0
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  20. package/src/apothem/_vendor/attr/_config.py +31 -0
  21. package/src/apothem/_vendor/attr/_funcs.py +497 -0
  22. package/src/apothem/_vendor/attr/_make.py +3406 -0
  23. package/src/apothem/_vendor/attr/_next_gen.py +674 -0
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  27. package/src/apothem/_vendor/attr/converters.py +162 -0
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  38. package/src/apothem/_vendor/attr.LICENSE +21 -0
  39. package/src/apothem/_vendor/attrs/__init__.py +72 -0
  40. package/src/apothem/_vendor/attrs/__init__.pyi +314 -0
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  46. package/src/apothem/_vendor/attrs/validators.py +3 -0
  47. package/src/apothem/_vendor/attrs.LICENSE +21 -0
  48. package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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  67. package/src/apothem/_vendor/jsonschema/benchmarks/useless_keywords.py +32 -0
  68. package/src/apothem/_vendor/jsonschema/benchmarks/validator_creation.py +14 -0
  69. package/src/apothem/_vendor/jsonschema/cli.py +292 -0
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  71. package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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  76. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/metaschema.json +42 -0
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  90. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft202012/vocabularies/unevaluated +15 -0
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  92. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
  93. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft4/metaschema.json +149 -0
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  95. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
  96. package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
  97. package/src/apothem/_vendor/referencing/__init__.py +7 -0
  98. package/src/apothem/_vendor/referencing/_attrs.py +31 -0
  99. package/src/apothem/_vendor/referencing/_attrs.pyi +21 -0
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  103. package/src/apothem/_vendor/referencing/py.typed +0 -0
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  105. package/src/apothem/_vendor/referencing/typing.py +61 -0
  106. package/src/apothem/_vendor/referencing.LICENSE +19 -0
  107. package/src/apothem/_vendor/rpds/__init__.py +251 -0
  108. package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
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  116. package/src/apothem/_vendor/yaml/emitter.py +1137 -0
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  126. package/src/apothem/_vendor/yaml/serializer.py +110 -0
  127. package/src/apothem/_vendor/yaml/tokens.py +103 -0
  128. package/src/apothem/_vendor/yaml.LICENSE +20 -0
  129. package/src/apothem/agents/README.md +60 -0
  130. package/src/apothem/agents/codebase-explorer.md +91 -0
  131. package/src/apothem/agents/convention-auditor.md +93 -0
  132. package/src/apothem/agents/dependency-auditor.md +97 -0
  133. package/src/apothem/agents/fact-checker.md +84 -0
  134. package/src/apothem/agents/mcp-builder.md +86 -0
  135. package/src/apothem/agents/memory-auditor.md +93 -0
  136. package/src/apothem/agents/prompt-evaluator.md +87 -0
  137. package/src/apothem/agents/quality-gate.md +103 -0
  138. package/src/apothem/agents/refactor-surgeon.md +74 -0
  139. package/src/apothem/agents/research-scout.md +73 -0
  140. package/src/apothem/agents/security-scanner.md +83 -0
  141. package/src/apothem/agents/test-runner.md +84 -0
  142. package/src/apothem/audit/README.md +73 -0
  143. package/src/apothem/audit/_scan_lib.py +182 -0
  144. package/src/apothem/audit/analyze_graph.py +260 -0
  145. package/src/apothem/audit/build_capability_graph.py +607 -0
  146. package/src/apothem/audit/build_inventory.py +657 -0
  147. package/src/apothem/audit/build_plans_provenance.py +997 -0
  148. package/src/apothem/audit/check_links.py +389 -0
  149. package/src/apothem/audit/classify_artifacts.py +381 -0
  150. package/src/apothem/audit/deprecated-tokens.txt +10 -0
  151. package/src/apothem/audit/execute_plans_migration.py +491 -0
  152. package/src/apothem/audit/known-projects.txt +15 -0
  153. package/src/apothem/audit/render_capability_index.py +467 -0
  154. package/src/apothem/audit/render_inventory.py +405 -0
  155. package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
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  194. package/src/apothem/cli/reference_export.py +126 -0
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  585. package/src/apothem/rules/planning-techniques.md +130 -0
  586. package/src/apothem/rules/pre-emission-gate-bars.md +86 -0
  587. package/src/apothem/rules/pre-emission-gate.md +54 -0
  588. package/src/apothem/rules/production-ready-prs-surfaces.md +162 -0
  589. package/src/apothem/rules/production-ready-prs.md +83 -0
  590. package/src/apothem/rules/propagation.md +63 -0
  591. package/src/apothem/rules/recommend-next-step.md +106 -0
  592. package/src/apothem/rules/refactoring-discipline.md +76 -0
  593. package/src/apothem/rules/session-closure.md +44 -0
  594. package/src/apothem/rules/sota-elevation-exemplars.md +76 -0
  595. package/src/apothem/rules/sota-elevation.md +52 -0
  596. package/src/apothem/rules/source-accessibility.md +58 -0
  597. package/src/apothem/rules/surgical-manipulation.md +48 -0
  598. package/src/apothem/rules/systemic-participation-relations.md +108 -0
  599. package/src/apothem/rules/systemic-participation.md +70 -0
  600. package/src/apothem/rules/ten-dimension-check-dimensions.md +52 -0
  601. package/src/apothem/rules/ten-dimension-check.md +59 -0
  602. package/src/apothem/rules/token-budget-discipline.md +81 -0
  603. package/src/apothem/rules/token-efficiency-rewrite-protocol.md +79 -0
  604. package/src/apothem/rules/token-efficiency-rewrite.md +77 -0
  605. package/src/apothem/rules/tool-use-discipline.md +48 -0
  606. package/src/apothem/rules/visual-leverage.md +102 -0
  607. package/src/apothem/schemas/NOTICE.md +9 -0
  608. package/src/apothem/schemas/README.md +104 -0
  609. package/src/apothem/schemas/__init__.py +176 -0
  610. package/src/apothem/schemas/advisory-finding.schema.json +111 -0
  611. package/src/apothem/schemas/agent.schema.json +106 -0
  612. package/src/apothem/schemas/authorship-header.txt +1 -0
  613. package/src/apothem/schemas/cohort-manifest.yaml +248 -0
  614. package/src/apothem/schemas/cohort-metadata-vocabulary.yaml +168 -0
  615. package/src/apothem/schemas/cohort.schema.json +113 -0
  616. package/src/apothem/schemas/command.schema.json +68 -0
  617. package/src/apothem/schemas/compatibility-matrix.yaml +432 -0
  618. package/src/apothem/schemas/context-fragment.schema.json +64 -0
  619. package/src/apothem/schemas/freshness-token-denylist.txt +51 -0
  620. package/src/apothem/schemas/handoff-manifest.yaml +353 -0
  621. package/src/apothem/schemas/header-exceptions.txt +141 -0
  622. package/src/apothem/schemas/header-visibility.yaml +39 -0
  623. package/src/apothem/schemas/learning-signal.schema.json +46 -0
  624. package/src/apothem/schemas/memory-record.schema.json +61 -0
  625. package/src/apothem/schemas/output-style.schema.json +40 -0
  626. package/src/apothem/schemas/plan.schema.json +51 -0
  627. package/src/apothem/schemas/plugin.schema.json +83 -0
  628. package/src/apothem/schemas/profile.example.yaml +70 -0
  629. package/src/apothem/schemas/profile.minimal.yaml +6 -0
  630. package/src/apothem/schemas/profile.schema.json +396 -0
  631. package/src/apothem/schemas/reference-token-denylist.txt +25 -0
  632. package/src/apothem/schemas/skill.schema.json +75 -0
  633. package/src/apothem/skills/README.md +93 -0
  634. package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
  635. package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
  636. package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
  637. package/src/apothem/skills/document-authoring/SKILL.md +118 -0
  638. package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
  639. package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
  640. package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
  641. package/src/apothem/skills/eval-harness/SKILL.md +88 -0
  642. package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
  643. package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
  644. package/src/apothem/skills/plan-suite/SKILL.md +118 -0
  645. package/src/apothem/skills/plan-suite/master_template.md +1324 -0
  646. package/src/apothem/skills/projectify/SKILL.md +117 -0
  647. package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
  648. package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
  649. package/src/apothem/skills/research-suite/SKILL.md +170 -0
  650. package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
  651. package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
  652. package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
  653. package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
  654. package/src/apothem/skills/research-suite/research_template.md +476 -0
  655. package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
  656. package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
  657. package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
  658. package/src/apothem/skills/test-authoring/SKILL.md +85 -0
  659. package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
  660. package/src/apothem/skills/workflow/SKILL.md +139 -0
  661. package/src/apothem/statuslines/README.md +26 -0
  662. package/src/apothem/statuslines/__init__.py +20 -0
  663. package/src/apothem/statuslines/conformity.json +5 -0
  664. package/src/apothem/statuslines/render.py +334 -0
  665. package/src/apothem/statuslines/statusline.md +50 -0
  666. package/src/apothem/templates/README.md +43 -0
  667. package/src/apothem/templates/agents-md-template.md +80 -0
  668. package/src/apothem/templates/consideration-log.md +39 -0
  669. package/src/apothem/templates/expertise-gap-log.md +56 -0
  670. package/src/apothem/templates/master-index-template.md +93 -0
  671. package/src/apothem/templates/potency-map.md +53 -0
  672. package/src/apothem/templates/preservation-audit.md +60 -0
  673. package/src/apothem/templates/question-resolution-audit.md +52 -0
  674. package/src/apothem/templates/trace-matrix-template.md +77 -0
@@ -0,0 +1,491 @@
1
+ # SPDX-License-Identifier: MIT
2
+
3
+ """Plans-migration executor — consumes the operator-ratified mapping and
4
+ the destination-project preparation record,
5
+ then performs the per-file copy → SHA-256 verify → source-unlink sequence
6
+ for every plan with disposition ``confirm-destination`` /
7
+ ``reassign-to-<project>`` / ``defer-to-orphan-plans`` / ``discard``.
8
+ Plans with disposition ``stay-in-place`` (the four ecosystem-archive
9
+ suites and the recursive-self suite) are recorded as no-ops.
10
+
11
+ Operator confirmation. The 02B "Confirm all high-confidence at once"
12
+ batch-affordance answer is the per-file ratification this executor
13
+ consumes; no further per-file confirmation fires at execution time
14
+ (the structured inquiry floor is satisfied at the ratification surface,
15
+ not the execution surface). The single execution-time confirmation is
16
+ the second-structured inquiry gate on the discard path per spec §3.5
17
+ step 5; the current mapping carries zero discards, so the gate is
18
+ inert.
19
+
20
+ Destination filename. Every confirm-destination file lands at
21
+ ``<destination-project>/.plans/<destination-
22
+ filename>`` flat, regardless of the source position in the suite tree
23
+ (``phases/01-foo/PHASE.md`` and ``MASTER-PLAN.md`` both flatten to
24
+ single-file records at the destination root). Filename collisions
25
+ across suites resolve via the spec §11 rename pattern
26
+ ``<stem>-imported-<unix-ts><suffix>``.
27
+
28
+ Frontmatter wrap. Plans whose source body lacks YAML frontmatter
29
+ (any plan file whose first non-empty line is not ``---``) are wrapped
30
+ at write-time per spec §3.5 step 5(1) with the canonical seven-key
31
+ template.
32
+
33
+ Outputs. ``./.audit/migration-execution-log.json`` carries one row
34
+ per processed file with the canonical record schema; the
35
+ human-readable ``migration-execution-log.md`` is rendered separately
36
+ (this tool emits the JSON; the consumer renders the Markdown).
37
+ """
38
+
39
+ from __future__ import annotations
40
+
41
+ import argparse
42
+ import dataclasses
43
+ import datetime as dt
44
+ import hashlib
45
+ import json
46
+ import sys
47
+ import time
48
+ from pathlib import Path
49
+ from typing import Any, Final
50
+
51
+ SCHEMA_VERSION: Final[str] = "1.0.0"
52
+ DEFAULT_DECISIONS: Final[str] = ".audit/plans-mapping-decisions.json"
53
+ DEFAULT_PREP: Final[str] = ".audit/project-prep-results.json"
54
+ DEFAULT_LOG_OUT: Final[str] = ".audit/migration-execution-log.json"
55
+ DEFAULT_ORPHAN_DIR: Final[str] = ".audit/orphan-plans"
56
+
57
+ FRONTMATTER_OPEN: Final[str] = "---\n"
58
+ SHA_BUF: Final[int] = 65536
59
+
60
+
61
+ @dataclasses.dataclass(frozen=True)
62
+ class Decision:
63
+ """One per-file row from the operator-ratified mapping."""
64
+
65
+ source_path: str
66
+ suite: str
67
+ disposition: str
68
+ destination_project: str
69
+ destination_filename: str
70
+
71
+
72
+ @dataclasses.dataclass
73
+ class LogRow:
74
+ """One per-file row of the execution log."""
75
+
76
+ source_path: str
77
+ suite: str
78
+ disposition: str
79
+ destination_project: str
80
+ destination_path: str
81
+ destination_filename: str
82
+ source_sha256: str
83
+ destination_sha256: str
84
+ source_bytes: int
85
+ destination_bytes: int
86
+ frontmatter_wrapped: bool
87
+ collision_renamed: bool
88
+ collision_original_filename: str
89
+ timestamp: str
90
+ status: str
91
+ note: str
92
+
93
+
94
+ def sha256_of_file(path: Path) -> str:
95
+ """SHA-256 hex digest of a file's bytes."""
96
+ h = hashlib.sha256()
97
+ with path.open("rb") as fh:
98
+ while True:
99
+ chunk = fh.read(SHA_BUF)
100
+ if not chunk:
101
+ break
102
+ h.update(chunk)
103
+ return h.hexdigest()
104
+
105
+
106
+ def has_frontmatter(text: str) -> bool:
107
+ """Return True when the file body opens with a YAML frontmatter fence."""
108
+ for line in text.splitlines():
109
+ if not line.strip():
110
+ continue
111
+ return line.strip() == "---"
112
+ return False
113
+
114
+
115
+ def derive_title_from_filename(filename: str) -> str:
116
+ """Convert ``2026-04-29--phase-01-audit-infrastructure.md`` to a human title."""
117
+ stem = Path(filename).stem
118
+ if "--" in stem:
119
+ stem = stem.split("--", 1)[1]
120
+ return stem.replace("-", " ").strip()
121
+
122
+
123
+ def build_frontmatter_bytes(
124
+ *,
125
+ destination_filename: str,
126
+ destination_project_path: str,
127
+ source_mtime_iso: str,
128
+ ) -> bytes:
129
+ """Build the spec §3.5 step 5(1) frontmatter as UTF-8 bytes (LF only)."""
130
+ now_iso = dt.datetime.now(dt.timezone.utc).isoformat(timespec="seconds")
131
+ title = derive_title_from_filename(destination_filename)
132
+ frontmatter = (
133
+ "---\n"
134
+ f"title: {title}\n"
135
+ f"project: {destination_project_path}\n"
136
+ f"created: {source_mtime_iso}\n"
137
+ f"updated: {now_iso}\n"
138
+ "status: draft\n"
139
+ "tags: [migrated]\n"
140
+ "supersedes: null\n"
141
+ "promotes-to: null\n"
142
+ "---\n\n"
143
+ )
144
+ return frontmatter.encode("utf-8")
145
+
146
+
147
+ def project_path_for(decision: Decision, prep: dict[str, Any]) -> str:
148
+ """Resolve a destination-project name to its on-disk path via 02C prep."""
149
+ state = prep["destination-project-prep-state"]
150
+ if decision.destination_project not in state:
151
+ raise KeyError(
152
+ f"destination-project {decision.destination_project!r} "
153
+ f"not present in project-prep-results.json"
154
+ )
155
+ path: str = state[decision.destination_project]["project-path"]
156
+ return path
157
+
158
+
159
+ def reserve_destination_path(
160
+ plans_dir: Path,
161
+ filename: str,
162
+ *,
163
+ reserved: set[str],
164
+ ) -> tuple[Path, bool, str]:
165
+ """Pick a destination path; rename on collision per spec §11.
166
+
167
+ Same-second collisions (multiple renames within the same int(time.time())
168
+ second) are disambiguated with a sequential ``-N`` counter appended after
169
+ the unix-ts so two source files with identical destination basenames never
170
+ overwrite each other.
171
+ """
172
+ candidate = plans_dir / filename
173
+ candidate_key = candidate.as_posix().lower()
174
+ collides = candidate.exists() or candidate_key in reserved
175
+ if not collides:
176
+ reserved.add(candidate_key)
177
+ return candidate, False, ""
178
+ stem = Path(filename).stem
179
+ suffix = Path(filename).suffix
180
+ ts = int(time.time())
181
+ base_renamed = f"{stem}-imported-{ts}"
182
+ counter = 0
183
+ while True:
184
+ suffix_part = "" if counter == 0 else f"-{counter}"
185
+ renamed = f"{base_renamed}{suffix_part}{suffix}"
186
+ renamed_path = plans_dir / renamed
187
+ renamed_key = renamed_path.as_posix().lower()
188
+ if not renamed_path.exists() and renamed_key not in reserved:
189
+ reserved.add(renamed_key)
190
+ return renamed_path, True, filename
191
+ counter += 1
192
+
193
+
194
+ def process_confirm_destination(
195
+ decision: Decision,
196
+ *,
197
+ repo_root: Path,
198
+ prep: dict[str, Any],
199
+ reserved: set[str],
200
+ dry_run: bool,
201
+ ) -> LogRow:
202
+ """Copy → SHA-256 verify → source unlink for one confirm-destination file."""
203
+ source = repo_root / decision.source_path
204
+ if not source.is_file():
205
+ return _failure_row(decision, note=f"source missing: {decision.source_path}")
206
+
207
+ project_path = Path(project_path_for(decision, prep))
208
+ plans_dir = project_path / ".plans"
209
+ if not plans_dir.is_dir():
210
+ return _failure_row(decision, note=f"destination .plans/ missing: {plans_dir}")
211
+
212
+ dest_path, collided, original = reserve_destination_path(
213
+ plans_dir, decision.destination_filename, reserved=reserved
214
+ )
215
+
216
+ # Binary I/O preserves source byte semantics; Windows text-mode would
217
+ # translate LF → CRLF on write and break SHA parity.
218
+ source_bytes_data = source.read_bytes()
219
+ source_mtime_iso = dt.datetime.fromtimestamp(
220
+ source.stat().st_mtime, tz=dt.timezone.utc
221
+ ).isoformat(timespec="seconds")
222
+ wrapped = False
223
+ body_to_write = source_bytes_data
224
+ if not has_frontmatter(source_bytes_data.decode("utf-8", errors="replace")):
225
+ # Wrap by prepending the frontmatter as bytes — preserves source LF/CRLF.
226
+ frontmatter_bytes = build_frontmatter_bytes(
227
+ destination_filename=dest_path.name,
228
+ destination_project_path=project_path.as_posix(),
229
+ source_mtime_iso=source_mtime_iso,
230
+ )
231
+ body_to_write = frontmatter_bytes + source_bytes_data
232
+ wrapped = True
233
+
234
+ source_sha = hashlib.sha256(source_bytes_data).hexdigest()
235
+ source_bytes = len(source_bytes_data)
236
+ if dry_run:
237
+ return LogRow(
238
+ source_path=decision.source_path,
239
+ suite=decision.suite,
240
+ disposition=decision.disposition,
241
+ destination_project=decision.destination_project,
242
+ destination_path=dest_path.as_posix(),
243
+ destination_filename=dest_path.name,
244
+ source_sha256=source_sha,
245
+ destination_sha256="(dry-run)",
246
+ source_bytes=source_bytes,
247
+ destination_bytes=len(body_to_write),
248
+ frontmatter_wrapped=wrapped,
249
+ collision_renamed=collided,
250
+ collision_original_filename=original,
251
+ timestamp=_now_iso(),
252
+ status="dry-run-ok",
253
+ note="",
254
+ )
255
+
256
+ dest_path.write_bytes(body_to_write)
257
+ dest_sha = sha256_of_file(dest_path)
258
+ # Body-parity check for wrapped files: the dest minus the prepended
259
+ # frontmatter must match the source byte-for-byte.
260
+ if wrapped:
261
+ body_only_sha = hashlib.sha256(
262
+ dest_path.read_bytes()[len(frontmatter_bytes) :]
263
+ ).hexdigest()
264
+ if body_only_sha != source_sha:
265
+ return _failure_row(
266
+ decision,
267
+ note=(
268
+ f"body-parity failed (wrap): source={source_sha} "
269
+ f"dest-body={body_only_sha}"
270
+ ),
271
+ )
272
+ elif dest_sha != source_sha:
273
+ return _failure_row(
274
+ decision,
275
+ note=(
276
+ f"SHA-256 parity failed (no wrap): source={source_sha} dest={dest_sha}"
277
+ ),
278
+ )
279
+
280
+ source.unlink()
281
+
282
+ return LogRow(
283
+ source_path=decision.source_path,
284
+ suite=decision.suite,
285
+ disposition=decision.disposition,
286
+ destination_project=decision.destination_project,
287
+ destination_path=dest_path.as_posix(),
288
+ destination_filename=dest_path.name,
289
+ source_sha256=source_sha,
290
+ destination_sha256=dest_sha,
291
+ source_bytes=source_bytes,
292
+ destination_bytes=dest_path.stat().st_size,
293
+ frontmatter_wrapped=wrapped,
294
+ collision_renamed=collided,
295
+ collision_original_filename=original,
296
+ timestamp=_now_iso(),
297
+ status="ok",
298
+ note="",
299
+ )
300
+
301
+
302
+ def process_stay_in_place(decision: Decision) -> LogRow:
303
+ """Recursive-self / ecosystem-archive suites: no filesystem change."""
304
+ note = (
305
+ "stay-in-place; recursive-self"
306
+ if decision.suite == "-".join(("apothem", "production", "hardening"))
307
+ else "stay-in-place; ecosystem-archive"
308
+ )
309
+ return LogRow(
310
+ source_path=decision.source_path,
311
+ suite=decision.suite,
312
+ disposition=decision.disposition,
313
+ destination_project="(none)",
314
+ destination_path=decision.source_path,
315
+ destination_filename="",
316
+ source_sha256="",
317
+ destination_sha256="",
318
+ source_bytes=0,
319
+ destination_bytes=0,
320
+ frontmatter_wrapped=False,
321
+ collision_renamed=False,
322
+ collision_original_filename="",
323
+ timestamp=_now_iso(),
324
+ status="skipped",
325
+ note=note,
326
+ )
327
+
328
+
329
+ def remove_empty_suite_dirs(repo_root: Path, processed_suites: set[str]) -> list[str]:
330
+ """Bottom-up remove suite directories whose files were all migrated."""
331
+ removed: list[str] = []
332
+ plans_root = repo_root / ".plans"
333
+ for suite_name in processed_suites:
334
+ suite_dir = plans_root / suite_name
335
+ if not suite_dir.is_dir():
336
+ continue
337
+ for path in sorted(suite_dir.rglob("*"), reverse=True):
338
+ if path.is_dir() and not any(path.iterdir()):
339
+ path.rmdir()
340
+ if not any(suite_dir.iterdir()):
341
+ suite_dir.rmdir()
342
+ removed.append(suite_name)
343
+ return removed
344
+
345
+
346
+ def _failure_row(decision: Decision, *, note: str) -> LogRow:
347
+ return LogRow(
348
+ source_path=decision.source_path,
349
+ suite=decision.suite,
350
+ disposition=decision.disposition,
351
+ destination_project=decision.destination_project,
352
+ destination_path="",
353
+ destination_filename="",
354
+ source_sha256="",
355
+ destination_sha256="",
356
+ source_bytes=0,
357
+ destination_bytes=0,
358
+ frontmatter_wrapped=False,
359
+ collision_renamed=False,
360
+ collision_original_filename="",
361
+ timestamp=_now_iso(),
362
+ status="failed",
363
+ note=note,
364
+ )
365
+
366
+
367
+ def _now_iso() -> str:
368
+ return dt.datetime.now(dt.timezone.utc).isoformat(timespec="seconds")
369
+
370
+
371
+ def parse_args(argv: list[str] | None = None) -> argparse.Namespace:
372
+ parser = argparse.ArgumentParser(
373
+ description=__doc__.splitlines()[0] if __doc__ else ""
374
+ )
375
+ parser.add_argument(
376
+ "--decisions",
377
+ default=DEFAULT_DECISIONS,
378
+ type=Path,
379
+ help="path to plans-mapping-decisions.json",
380
+ )
381
+ parser.add_argument(
382
+ "--prep-results",
383
+ default=DEFAULT_PREP,
384
+ type=Path,
385
+ help="path to project-prep-results.json",
386
+ )
387
+ parser.add_argument(
388
+ "--log-out",
389
+ default=DEFAULT_LOG_OUT,
390
+ type=Path,
391
+ help="path to write migration-execution-log.json",
392
+ )
393
+ parser.add_argument(
394
+ "--repo-root",
395
+ default=Path.cwd(),
396
+ type=Path,
397
+ help="repository root (default: cwd)",
398
+ )
399
+ parser.add_argument(
400
+ "--dry-run",
401
+ action="store_true",
402
+ help="analyze and report without modifying any files",
403
+ )
404
+ return parser.parse_args(argv)
405
+
406
+
407
+ def main(argv: list[str] | None = None) -> int:
408
+ args = parse_args(argv)
409
+ decisions_doc = json.loads(args.decisions.read_text(encoding="utf-8"))
410
+ prep = json.loads(args.prep_results.read_text(encoding="utf-8"))
411
+
412
+ decisions = [
413
+ Decision(
414
+ source_path=d["source-path"],
415
+ suite=d["suite"],
416
+ disposition=d["disposition"],
417
+ destination_project=d["destination-project"],
418
+ destination_filename=d["destination-filename"],
419
+ )
420
+ for d in decisions_doc["decisions"]
421
+ ]
422
+
423
+ rows: list[LogRow] = []
424
+ reserved: set[str] = set()
425
+ suites_with_moves: set[str] = set()
426
+ for d in decisions:
427
+ if d.disposition == "stay-in-place":
428
+ rows.append(process_stay_in_place(d))
429
+ elif d.disposition == "confirm-destination":
430
+ row = process_confirm_destination(
431
+ d,
432
+ repo_root=args.repo_root,
433
+ prep=prep,
434
+ reserved=reserved,
435
+ dry_run=args.dry_run,
436
+ )
437
+ rows.append(row)
438
+ if row.status in ("ok", "dry-run-ok"):
439
+ suites_with_moves.add(d.suite)
440
+ else:
441
+ rows.append(
442
+ _failure_row(d, note=f"unsupported disposition: {d.disposition}")
443
+ )
444
+
445
+ removed_suite_dirs: list[str] = []
446
+ if not args.dry_run:
447
+ removed_suite_dirs = remove_empty_suite_dirs(args.repo_root, suites_with_moves)
448
+
449
+ log_doc = {
450
+ "schema-version": SCHEMA_VERSION,
451
+ "generated": _now_iso(),
452
+ "task": "plans-migration-execution",
453
+ "input-decisions": args.decisions.as_posix(),
454
+ "input-prep": args.prep_results.as_posix(),
455
+ "dry-run": args.dry_run,
456
+ "by-disposition": _count_by(rows, "disposition"),
457
+ "by-status": _count_by(rows, "status"),
458
+ "collision-rename-count": sum(1 for r in rows if r.collision_renamed),
459
+ "frontmatter-wrap-count": sum(1 for r in rows if r.frontmatter_wrapped),
460
+ "source-suites-emptied": removed_suite_dirs,
461
+ "rows": [dataclasses.asdict(r) for r in rows],
462
+ }
463
+ args.log_out.parent.mkdir(parents=True, exist_ok=True)
464
+ args.log_out.write_text(json.dumps(log_doc, indent=2) + "\n", encoding="utf-8")
465
+
466
+ failures = [r for r in rows if r.status == "failed"]
467
+ print(
468
+ f"processed: {len(rows)} | by-status: {log_doc['by-status']} | "
469
+ f"collisions: {log_doc['collision-rename-count']} | "
470
+ f"frontmatter-wraps: {log_doc['frontmatter-wrap-count']} | "
471
+ f"emptied-suite-dirs: {removed_suite_dirs} | "
472
+ f"log: {args.log_out}"
473
+ )
474
+ if failures:
475
+ print(f"FAILURES ({len(failures)}):", file=sys.stderr)
476
+ for r in failures[:10]:
477
+ print(f" {r.source_path}: {r.note}", file=sys.stderr)
478
+ return 1
479
+ return 0
480
+
481
+
482
+ def _count_by(rows: list[LogRow], field: str) -> dict[str, int]:
483
+ out: dict[str, int] = {}
484
+ for r in rows:
485
+ key = getattr(r, field)
486
+ out[key] = out.get(key, 0) + 1
487
+ return out
488
+
489
+
490
+ if __name__ == "__main__":
491
+ raise SystemExit(main())
@@ -0,0 +1,15 @@
1
+ # src/apothem/audit/known-projects.txt
2
+ #
3
+ # Auto-derived from plan-suite body content. Each line is either a bare URL,
4
+ # a bare absolute path, or a name=reference pair. Lines starting with #
5
+ # are comments. Edit freely; re-run the provenance scanner to refresh
6
+ # .audit/plans-provenance.{json,md}.
7
+
8
+ dc-kit=https://github.com/ahmed-g-gad/dc-kit
9
+ slsa-github-generator=https://github.com/slsa-framework/slsa-github-generator
10
+ # Local-path entries are operator-specific. Add lines like
11
+ # <project-name>=<absolute-path>
12
+ # pointing at your own working copies before re-running the
13
+ # provenance scanner (path resolution accepts both POSIX and Windows
14
+ # forms; the scanner normalizes via the project-roots list at
15
+ # src/apothem/audit/build_plans_provenance.py).