@ahmed-g-gad/apothem 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +60 -0
- package/LICENSE +21 -0
- package/LICENSES/MIT.txt +18 -0
- package/LICENSES/PSF-2.0.txt +47 -0
- package/README.md +549 -0
- package/bin/README.md +37 -0
- package/bin/apothem.mjs +78 -0
- package/package.json +75 -0
- package/pyproject.toml +347 -0
- package/src/apothem/README.md +52 -0
- package/src/apothem/__init__.py +66 -0
- package/src/apothem/__main__.py +28 -0
- package/src/apothem/_vendor/.keep +0 -0
- package/src/apothem/_vendor/__init__.py +25 -0
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- package/src/apothem/_vendor/attr.LICENSE +21 -0
- package/src/apothem/_vendor/attrs/__init__.py +72 -0
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- package/src/apothem/_vendor/attrs/setters.py +3 -0
- package/src/apothem/_vendor/attrs/validators.py +3 -0
- package/src/apothem/_vendor/attrs.LICENSE +21 -0
- package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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- package/src/apothem/_vendor/jsonschema/benchmarks/json_schema_test_suite.py +12 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/nested_schemas.py +56 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/subcomponents.py +42 -0
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- package/src/apothem/_vendor/jsonschema/exceptions.py +490 -0
- package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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- package/src/apothem/_vendor/jsonschema.LICENSE +19 -0
- package/src/apothem/_vendor/jsonschema_specifications/__init__.py +12 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/vocabularies/applicator +56 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
- package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
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- package/src/apothem/_vendor/referencing.LICENSE +19 -0
- package/src/apothem/_vendor/rpds/__init__.py +251 -0
- package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
- package/src/apothem/_vendor/typing_extensions.py +4317 -0
- package/src/apothem/_vendor/vendor.txt +22 -0
- package/src/apothem/_vendor/yaml/__init__.py +389 -0
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- package/src/apothem/_vendor/yaml/constructor.py +748 -0
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- package/src/apothem/_vendor/yaml/dumper.py +61 -0
- package/src/apothem/_vendor/yaml/emitter.py +1137 -0
- package/src/apothem/_vendor/yaml/error.py +74 -0
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- package/src/apothem/agents/README.md +60 -0
- package/src/apothem/agents/codebase-explorer.md +91 -0
- package/src/apothem/agents/convention-auditor.md +93 -0
- package/src/apothem/agents/dependency-auditor.md +97 -0
- package/src/apothem/agents/fact-checker.md +84 -0
- package/src/apothem/agents/mcp-builder.md +86 -0
- package/src/apothem/agents/memory-auditor.md +93 -0
- package/src/apothem/agents/prompt-evaluator.md +87 -0
- package/src/apothem/agents/quality-gate.md +103 -0
- package/src/apothem/agents/refactor-surgeon.md +74 -0
- package/src/apothem/agents/research-scout.md +73 -0
- package/src/apothem/agents/security-scanner.md +83 -0
- package/src/apothem/agents/test-runner.md +84 -0
- package/src/apothem/audit/README.md +73 -0
- package/src/apothem/audit/_scan_lib.py +182 -0
- package/src/apothem/audit/analyze_graph.py +260 -0
- package/src/apothem/audit/build_capability_graph.py +607 -0
- package/src/apothem/audit/build_inventory.py +657 -0
- package/src/apothem/audit/build_plans_provenance.py +997 -0
- package/src/apothem/audit/check_links.py +389 -0
- package/src/apothem/audit/classify_artifacts.py +381 -0
- package/src/apothem/audit/deprecated-tokens.txt +10 -0
- package/src/apothem/audit/execute_plans_migration.py +491 -0
- package/src/apothem/audit/known-projects.txt +15 -0
- package/src/apothem/audit/render_capability_index.py +467 -0
- package/src/apothem/audit/render_inventory.py +405 -0
- package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
- package/src/apothem/audit/scan_ai_surfaces_coarse.py +261 -0
- package/src/apothem/audit/scan_drift_features.py +143 -0
- package/src/apothem/audit/scan_frontmatter.py +293 -0
- package/src/apothem/audit/scan_header_coverage.py +1134 -0
- package/src/apothem/audit/scan_plan_leakage.py +540 -0
- package/src/apothem/audit/scan_plans_discipline.py +188 -0
- package/src/apothem/audit/scan_secrets_pii.py +245 -0
- package/src/apothem/audit/scan_stale_tokens.py +296 -0
- package/src/apothem/audit/synthesize_drift.py +205 -0
- package/src/apothem/benchmarks/README.md +33 -0
- package/src/apothem/benchmarks/__init__.py +3 -0
- package/src/apothem/benchmarks/bench_agents.py +63 -0
- package/src/apothem/benchmarks/bench_hooks.py +93 -0
- package/src/apothem/benchmarks/bench_install.py +58 -0
- package/src/apothem/benchmarks/bench_tests.py +93 -0
- package/src/apothem/benchmarks/bench_validate_ecosystem.py +84 -0
- package/src/apothem/cli/README.md +33 -0
- package/src/apothem/cli/__init__.py +229 -0
- package/src/apothem/cli/_cmd_completion.py +88 -0
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- package/src/apothem/cli/_common_flags.py +90 -0
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- package/src/apothem/cli/_json_formatter.py +21 -0
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- package/src/apothem/commands/research-sources.md +266 -0
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- package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
- package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
- package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
- package/src/apothem/skills/document-authoring/SKILL.md +118 -0
- package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
- package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
- package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
- package/src/apothem/skills/eval-harness/SKILL.md +88 -0
- package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
- package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
- package/src/apothem/skills/plan-suite/SKILL.md +118 -0
- package/src/apothem/skills/plan-suite/master_template.md +1324 -0
- package/src/apothem/skills/projectify/SKILL.md +117 -0
- package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
- package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
- package/src/apothem/skills/research-suite/SKILL.md +170 -0
- package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
- package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
- package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
- package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
- package/src/apothem/skills/research-suite/research_template.md +476 -0
- package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
- package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
- package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
- package/src/apothem/skills/test-authoring/SKILL.md +85 -0
- package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
- package/src/apothem/skills/workflow/SKILL.md +139 -0
- package/src/apothem/statuslines/README.md +26 -0
- package/src/apothem/statuslines/__init__.py +20 -0
- package/src/apothem/statuslines/conformity.json +5 -0
- package/src/apothem/statuslines/render.py +334 -0
- package/src/apothem/statuslines/statusline.md +50 -0
- package/src/apothem/templates/README.md +43 -0
- package/src/apothem/templates/agents-md-template.md +80 -0
- package/src/apothem/templates/consideration-log.md +39 -0
- package/src/apothem/templates/expertise-gap-log.md +56 -0
- package/src/apothem/templates/master-index-template.md +93 -0
- package/src/apothem/templates/potency-map.md +53 -0
- package/src/apothem/templates/preservation-audit.md +60 -0
- package/src/apothem/templates/question-resolution-audit.md +52 -0
- package/src/apothem/templates/trace-matrix-template.md +77 -0
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# SPDX-License-Identifier: MIT
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"""Shared propagation driver for harness adapters.
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Every harness adapter's ``install.py`` propagates the apothem convention
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surface by the same recipe: load the harness's rules from the canonical
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manifest, sweep stale top-level paths from earlier install layouts, then
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apply each install entry in declaration order (``write_text`` entries write
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a single template with backup/merge safeguards; ``replace_tree`` entries refresh a directory
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under the manifest's exclude globs and per-directory filename filter). This
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module carries that recipe once so the adapters hold only their
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harness-specific identity (the manifest key) and scope (user-scope harness
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root vs. project-scope project root).
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Scope is expressed by which keyword the caller supplies:
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- **User-scope** adapters (claude_code, codex, antigravity) pass
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``harness_root`` — the harness's configuration root (e.g. ``~/.claude``).
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The root is created if absent.
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- **Project-scope** adapters (cursor, github_copilot, gemini_cli, windsurf)
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pass ``project_root`` — the operator-supplied project directory. The root
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is assumed to exist; only per-entry target parents are created.
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The manifest's ``${HARNESS_ROOT}`` / ``${PROJECT_ROOT}`` placeholders are
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substituted by ``apothem.lib.propagation.resolve_target`` against whichever
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root the caller supplied; a placeholder with no matching root is left
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literal so callers surface the unresolved form instead of a misleading
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absolute path.
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"""
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from __future__ import annotations
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from apothem.lib import install_ledger as install_ledger
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from apothem.lib.propagation import load_manifest as load_manifest
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from apothem.lib.propagation import resolve_target as resolve_target
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from .install_driver_apply import _COHORT_DOC_FILES as _COHORT_DOC_FILES
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from .install_driver_apply import apply_codex_agents as apply_codex_agents
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from .install_driver_apply import apply_command_skills as apply_command_skills
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from .install_driver_apply import apply_gemini_agents as apply_gemini_agents
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from .install_driver_apply import apply_gemini_commands as apply_gemini_commands
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from .install_driver_apply import apply_markdown_commands as apply_markdown_commands
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from .install_driver_apply import apply_merge_tree_entries as apply_merge_tree_entries
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from .install_driver_apply import apply_opencode_agents as apply_opencode_agents
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from .install_driver_apply import apply_qwen_agents as apply_qwen_agents
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from .install_driver_apply import apply_replace_tree as apply_replace_tree
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from .install_driver_apply import apply_write_text as apply_write_text
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from .install_driver_backup import _LEDGER_OUTCOMES as _LEDGER_OUTCOMES
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from .install_driver_backup import _NON_LEDGER_OPERATIONS as _NON_LEDGER_OPERATIONS
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from .install_driver_backup import _backup_relative_path as _backup_relative_path
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from .install_driver_backup import _compensating_rollback as _compensating_rollback
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from .install_driver_backup import _guarded_unlink as _guarded_unlink
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from .install_driver_backup import _install_lock_path as _install_lock_path
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from .install_driver_backup import _ledger_targets as _ledger_targets
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from .install_driver_backup import _replace_path as _replace_path
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from .install_driver_backup import _reserve_unique_backup as _reserve_unique_backup
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from .install_driver_backup import _sibling_backup_path as _sibling_backup_path
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from .install_driver_backup import _unique_path as _unique_path
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from .install_driver_backup import _write_file_atomically as _write_file_atomically
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from .install_driver_backup import backup_existing as backup_existing
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from .install_driver_backup import backup_file_to_sibling as backup_file_to_sibling
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from .install_driver_backup import finalize_install as finalize_install
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from .install_driver_backup import list_backup_timestamps as list_backup_timestamps
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from .install_driver_backup import record_install as record_install
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from .install_driver_backup import restore_backup as restore_backup
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from .install_driver_backup import write_bytes_safely as write_bytes_safely
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from .install_driver_converters import (
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_OPENCODE_PERMISSION_MAP as _OPENCODE_PERMISSION_MAP,
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)
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from .install_driver_converters import _QWEN_TOOL_MAP as _QWEN_TOOL_MAP
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from .install_driver_converters import _agent_body as _agent_body
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from .install_driver_converters import _agent_description as _agent_description
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from .install_driver_converters import _agent_name as _agent_name
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from .install_driver_converters import _agent_scalar_list as _agent_scalar_list
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from .install_driver_converters import _agent_tool_names as _agent_tool_names
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from .install_driver_converters import _codex_agent_text as _codex_agent_text
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from .install_driver_converters import _gemini_agent_text as _gemini_agent_text
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from .install_driver_converters import _gemini_command_text as _gemini_command_text
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from .install_driver_converters import _generated_skill_text as _generated_skill_text
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from .install_driver_converters import (
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_installed_reference_note as _installed_reference_note,
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)
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from .install_driver_converters import (
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_native_markdown_command_text as _native_markdown_command_text,
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)
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from .install_driver_converters import _opencode_agent_text as _opencode_agent_text
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from .install_driver_converters import (
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_opencode_permission_lines as _opencode_permission_lines,
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)
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from .install_driver_converters import _qwen_agent_text as _qwen_agent_text
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from .install_driver_converters import _qwen_approval_mode as _qwen_approval_mode
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from .install_driver_converters import (
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_strip_leading_html_comment as _strip_leading_html_comment,
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)
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from .install_driver_converters import (
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_strip_markdown_frontmatter as _strip_markdown_frontmatter,
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)
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from .install_driver_converters import _toml_multiline_string as _toml_multiline_string
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from .install_driver_converters import _toml_string as _toml_string
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from .install_driver_converters import _yaml_list as _yaml_list
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from .install_driver_converters import _yaml_scalar as _yaml_scalar
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from .install_driver_lifecycle import FidelityResult as FidelityResult
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from .install_driver_lifecycle import _native_config_parses as _native_config_parses
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from .install_driver_lifecycle import _profile_anchor_targets as _profile_anchor_targets
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from .install_driver_lifecycle import _remove_data_home as _remove_data_home
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from .install_driver_lifecycle import _rendered_template_text as _rendered_template_text
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from .install_driver_lifecycle import build_plan as build_plan
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from .install_driver_lifecycle import check_fidelity as check_fidelity
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from .install_driver_lifecycle import fidelity_is_faithful as fidelity_is_faithful
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from .install_driver_lifecycle import run_uninstall as run_uninstall
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from .install_driver_lifecycle import verify_install as verify_install
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from .install_driver_materialize import (
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_capability_projection_results as _capability_projection_results,
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)
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from .install_driver_materialize import (
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_dispatch_install_entry as _dispatch_install_entry,
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)
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from .install_driver_materialize import _dry_run_results as _dry_run_results
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from .install_driver_materialize import (
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_materialize_data_surfaces as _materialize_data_surfaces,
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)
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from .install_driver_materialize import run_install as run_install
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from .install_driver_merge import _APOTHEM_HOOK_MARKERS as _APOTHEM_HOOK_MARKERS
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from .install_driver_merge import (
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_apply_operator_owned_file as _apply_operator_owned_file,
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)
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from .install_driver_merge import _dedupe_json_list as _dedupe_json_list
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from .install_driver_merge import _is_apothem_hook as _is_apothem_hook
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from .install_driver_merge import _leading_comment_block as _leading_comment_block
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from .install_driver_merge import _merge_hook_entry as _merge_hook_entry
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from .install_driver_merge import _merge_hooks as _merge_hooks
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from .install_driver_merge import _merge_json_settings as _merge_json_settings
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from .install_driver_merge import _merge_json_values as _merge_json_values
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from .install_driver_merge import _merge_native_content as _merge_native_content
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from .install_driver_merge import _merged_json_text as _merged_json_text
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from .install_driver_merge import _merged_yaml_text as _merged_yaml_text
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from .install_driver_merge import (
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_operator_owned_merge_text as _operator_owned_merge_text,
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)
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from .install_driver_merge import _operator_owned_preview as _operator_owned_preview
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from .install_driver_merge import _overlay_json_settings as _overlay_json_settings
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from .install_driver_merge import _unified_diff as _unified_diff
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from .install_driver_merge import (
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apply_managed_block_anchor as apply_managed_block_anchor,
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)
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from .install_driver_merge import (
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apply_operator_owned_content as apply_operator_owned_content,
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)
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from .install_driver_merge import apply_sentinel_merge as apply_sentinel_merge
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from .install_driver_merge import project_profile_document as project_profile_document
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from .install_driver_merge import render_content_tokens as render_content_tokens
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from .install_driver_merge import write_text_safely as write_text_safely
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from .install_driver_pathsafety import _allowed_write_root as _allowed_write_root
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from .install_driver_pathsafety import _existing_chain as _existing_chain
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from .install_driver_pathsafety import (
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_filesystem_is_case_insensitive as _filesystem_is_case_insensitive,
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)
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from .install_driver_pathsafety import _is_relative_to as _is_relative_to
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from .install_driver_pathsafety import _normalized as _normalized
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from .install_driver_pathsafety import _root_for as _root_for
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from .install_driver_pathsafety import _unsafe_symlink as _unsafe_symlink
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from .install_driver_pathsafety import _validate_target_path as _validate_target_path
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from .install_driver_pathsafety import _within_allowed_root as _within_allowed_root
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from .install_driver_planvalidation import (
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_generated_targets_for_entry as _generated_targets_for_entry,
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)
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from .install_driver_planvalidation import (
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_projected_profile_body as _projected_profile_body,
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)
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from .install_driver_planvalidation import (
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_validate_install_plan as _validate_install_plan,
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)
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from .install_driver_planvalidation import (
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_validate_ownership_class as _validate_ownership_class,
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)
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from .install_driver_planvalidation import _validate_source as _validate_source
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from .install_driver_planvalidation import load_rules as load_rules
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from .install_driver_planvalidation import make_ignore as make_ignore
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from .install_driver_removal import _drop_owned_top_keys as _drop_owned_top_keys
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from .install_driver_removal import (
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_remove_apothem_hook_handlers as _remove_apothem_hook_handlers,
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)
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from .install_driver_removal import _remove_apothem_hooks as _remove_apothem_hooks
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from .install_driver_removal import (
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_remove_apothem_list_items as _remove_apothem_list_items,
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)
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from .install_driver_removal import _remove_apothem_values as _remove_apothem_values
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from .install_driver_removal import _strip_apothem_json as _strip_apothem_json
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from .install_driver_removal import _strip_apothem_yaml as _strip_apothem_yaml
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from .install_driver_removal import (
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_surgical_remove_from_target as _surgical_remove_from_target,
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)
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from .install_driver_removal import (
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surgically_remove_materialized_config as surgically_remove_materialized_config,
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)
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from .install_driver_treeops import (
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_directory_contents_equal as _directory_contents_equal,
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)
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from .install_driver_treeops import _iter_relative_files as _iter_relative_files
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from .install_driver_treeops import (
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_single_file_directory_matches as _single_file_directory_matches,
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)
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from .install_driver_treeops import (
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_write_single_file_directory as _write_single_file_directory,
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)
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from .install_driver_treeops import replace_tree as replace_tree
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from .install_driver_treeops import sweep_stale as sweep_stale
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from .install_driver_types import _INSTALL_ENTRY_MODES as _INSTALL_ENTRY_MODES
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from .install_driver_types import _OUTCOMES as _OUTCOMES
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from .install_driver_types import (
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_REFUSED_OWNERSHIP_CLASSES as _REFUSED_OWNERSHIP_CLASSES,
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)
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from .install_driver_types import _REMOVE_KEY as _REMOVE_KEY
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from .install_driver_types import APOTHEM_SRC as APOTHEM_SRC
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from .install_driver_types import BACKUP_ROOT as BACKUP_ROOT
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from .install_driver_types import OPERATION_LABELS as OPERATION_LABELS
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from .install_driver_types import AuthorizationRequest as AuthorizationRequest
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from .install_driver_types import AuthorizeFn as AuthorizeFn
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from .install_driver_types import IgnoreFn as IgnoreFn
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220
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+
from .install_driver_types import MaterializationError as MaterializationError
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221
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+
from .install_driver_types import MaterializationOutcome as MaterializationOutcome
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222
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+
from .install_driver_types import MaterializationResult as MaterializationResult
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223
|
+
from .install_driver_types import MaterializationRun as MaterializationRun
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|
224
|
+
from .install_driver_types import _handle_rm_error as _handle_rm_error
|
|
225
|
+
from .install_driver_types import _is_excluded_path as _is_excluded_path
|
|
226
|
+
from .install_driver_types import _path_text as _path_text
|
|
227
|
+
from .install_driver_types import _result as _result
|
|
228
|
+
from .install_driver_types import _timestamp_slug as _timestamp_slug
|
|
229
|
+
from .install_driver_types import _with_detail as _with_detail
|
|
230
|
+
from .install_driver_types import operation_label as operation_label
|
|
231
|
+
from .install_driver_types import preview_status as preview_status
|
|
232
|
+
from .install_driver_types import resolve_source as resolve_source
|
|
233
|
+
|
|
234
|
+
__all__ = [
|
|
235
|
+
"APOTHEM_SRC",
|
|
236
|
+
"BACKUP_ROOT",
|
|
237
|
+
"OPERATION_LABELS",
|
|
238
|
+
"AuthorizationRequest",
|
|
239
|
+
"AuthorizeFn",
|
|
240
|
+
"FidelityResult",
|
|
241
|
+
"IgnoreFn",
|
|
242
|
+
"MaterializationError",
|
|
243
|
+
"MaterializationOutcome",
|
|
244
|
+
"MaterializationResult",
|
|
245
|
+
"MaterializationRun",
|
|
246
|
+
"apply_codex_agents",
|
|
247
|
+
"apply_command_skills",
|
|
248
|
+
"apply_gemini_agents",
|
|
249
|
+
"apply_gemini_commands",
|
|
250
|
+
"apply_managed_block_anchor",
|
|
251
|
+
"apply_markdown_commands",
|
|
252
|
+
"apply_merge_tree_entries",
|
|
253
|
+
"apply_opencode_agents",
|
|
254
|
+
"apply_operator_owned_content",
|
|
255
|
+
"apply_qwen_agents",
|
|
256
|
+
"apply_replace_tree",
|
|
257
|
+
"apply_sentinel_merge",
|
|
258
|
+
"apply_write_text",
|
|
259
|
+
"backup_existing",
|
|
260
|
+
"build_plan",
|
|
261
|
+
"check_fidelity",
|
|
262
|
+
"fidelity_is_faithful",
|
|
263
|
+
"finalize_install",
|
|
264
|
+
"list_backup_timestamps",
|
|
265
|
+
"load_rules",
|
|
266
|
+
"make_ignore",
|
|
267
|
+
"operation_label",
|
|
268
|
+
"preview_status",
|
|
269
|
+
"record_install",
|
|
270
|
+
"replace_tree",
|
|
271
|
+
"resolve_source",
|
|
272
|
+
"resolve_target",
|
|
273
|
+
"restore_backup",
|
|
274
|
+
"run_install",
|
|
275
|
+
"run_uninstall",
|
|
276
|
+
"surgically_remove_materialized_config",
|
|
277
|
+
"sweep_stale",
|
|
278
|
+
"verify_install",
|
|
279
|
+
"write_bytes_safely",
|
|
280
|
+
"write_text_safely",
|
|
281
|
+
]
|