@ahmed-g-gad/apothem 0.1.1

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Files changed (674) hide show
  1. package/CHANGELOG.md +60 -0
  2. package/LICENSE +21 -0
  3. package/LICENSES/MIT.txt +18 -0
  4. package/LICENSES/PSF-2.0.txt +47 -0
  5. package/README.md +549 -0
  6. package/bin/README.md +37 -0
  7. package/bin/apothem.mjs +78 -0
  8. package/package.json +75 -0
  9. package/pyproject.toml +347 -0
  10. package/src/apothem/README.md +52 -0
  11. package/src/apothem/__init__.py +66 -0
  12. package/src/apothem/__main__.py +28 -0
  13. package/src/apothem/_vendor/.keep +0 -0
  14. package/src/apothem/_vendor/__init__.py +25 -0
  15. package/src/apothem/_vendor/attr/__init__.py +104 -0
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  20. package/src/apothem/_vendor/attr/_config.py +31 -0
  21. package/src/apothem/_vendor/attr/_funcs.py +497 -0
  22. package/src/apothem/_vendor/attr/_make.py +3406 -0
  23. package/src/apothem/_vendor/attr/_next_gen.py +674 -0
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  27. package/src/apothem/_vendor/attr/converters.py +162 -0
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  38. package/src/apothem/_vendor/attr.LICENSE +21 -0
  39. package/src/apothem/_vendor/attrs/__init__.py +72 -0
  40. package/src/apothem/_vendor/attrs/__init__.pyi +314 -0
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  46. package/src/apothem/_vendor/attrs/validators.py +3 -0
  47. package/src/apothem/_vendor/attrs.LICENSE +21 -0
  48. package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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  67. package/src/apothem/_vendor/jsonschema/benchmarks/useless_keywords.py +32 -0
  68. package/src/apothem/_vendor/jsonschema/benchmarks/validator_creation.py +14 -0
  69. package/src/apothem/_vendor/jsonschema/cli.py +292 -0
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  71. package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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  76. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/metaschema.json +42 -0
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  90. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft202012/vocabularies/unevaluated +15 -0
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  92. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
  93. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft4/metaschema.json +149 -0
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  95. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
  96. package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
  97. package/src/apothem/_vendor/referencing/__init__.py +7 -0
  98. package/src/apothem/_vendor/referencing/_attrs.py +31 -0
  99. package/src/apothem/_vendor/referencing/_attrs.pyi +21 -0
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  103. package/src/apothem/_vendor/referencing/py.typed +0 -0
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  105. package/src/apothem/_vendor/referencing/typing.py +61 -0
  106. package/src/apothem/_vendor/referencing.LICENSE +19 -0
  107. package/src/apothem/_vendor/rpds/__init__.py +251 -0
  108. package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
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  116. package/src/apothem/_vendor/yaml/emitter.py +1137 -0
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  126. package/src/apothem/_vendor/yaml/serializer.py +110 -0
  127. package/src/apothem/_vendor/yaml/tokens.py +103 -0
  128. package/src/apothem/_vendor/yaml.LICENSE +20 -0
  129. package/src/apothem/agents/README.md +60 -0
  130. package/src/apothem/agents/codebase-explorer.md +91 -0
  131. package/src/apothem/agents/convention-auditor.md +93 -0
  132. package/src/apothem/agents/dependency-auditor.md +97 -0
  133. package/src/apothem/agents/fact-checker.md +84 -0
  134. package/src/apothem/agents/mcp-builder.md +86 -0
  135. package/src/apothem/agents/memory-auditor.md +93 -0
  136. package/src/apothem/agents/prompt-evaluator.md +87 -0
  137. package/src/apothem/agents/quality-gate.md +103 -0
  138. package/src/apothem/agents/refactor-surgeon.md +74 -0
  139. package/src/apothem/agents/research-scout.md +73 -0
  140. package/src/apothem/agents/security-scanner.md +83 -0
  141. package/src/apothem/agents/test-runner.md +84 -0
  142. package/src/apothem/audit/README.md +73 -0
  143. package/src/apothem/audit/_scan_lib.py +182 -0
  144. package/src/apothem/audit/analyze_graph.py +260 -0
  145. package/src/apothem/audit/build_capability_graph.py +607 -0
  146. package/src/apothem/audit/build_inventory.py +657 -0
  147. package/src/apothem/audit/build_plans_provenance.py +997 -0
  148. package/src/apothem/audit/check_links.py +389 -0
  149. package/src/apothem/audit/classify_artifacts.py +381 -0
  150. package/src/apothem/audit/deprecated-tokens.txt +10 -0
  151. package/src/apothem/audit/execute_plans_migration.py +491 -0
  152. package/src/apothem/audit/known-projects.txt +15 -0
  153. package/src/apothem/audit/render_capability_index.py +467 -0
  154. package/src/apothem/audit/render_inventory.py +405 -0
  155. package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
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  194. package/src/apothem/cli/reference_export.py +126 -0
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  585. package/src/apothem/rules/planning-techniques.md +130 -0
  586. package/src/apothem/rules/pre-emission-gate-bars.md +86 -0
  587. package/src/apothem/rules/pre-emission-gate.md +54 -0
  588. package/src/apothem/rules/production-ready-prs-surfaces.md +162 -0
  589. package/src/apothem/rules/production-ready-prs.md +83 -0
  590. package/src/apothem/rules/propagation.md +63 -0
  591. package/src/apothem/rules/recommend-next-step.md +106 -0
  592. package/src/apothem/rules/refactoring-discipline.md +76 -0
  593. package/src/apothem/rules/session-closure.md +44 -0
  594. package/src/apothem/rules/sota-elevation-exemplars.md +76 -0
  595. package/src/apothem/rules/sota-elevation.md +52 -0
  596. package/src/apothem/rules/source-accessibility.md +58 -0
  597. package/src/apothem/rules/surgical-manipulation.md +48 -0
  598. package/src/apothem/rules/systemic-participation-relations.md +108 -0
  599. package/src/apothem/rules/systemic-participation.md +70 -0
  600. package/src/apothem/rules/ten-dimension-check-dimensions.md +52 -0
  601. package/src/apothem/rules/ten-dimension-check.md +59 -0
  602. package/src/apothem/rules/token-budget-discipline.md +81 -0
  603. package/src/apothem/rules/token-efficiency-rewrite-protocol.md +79 -0
  604. package/src/apothem/rules/token-efficiency-rewrite.md +77 -0
  605. package/src/apothem/rules/tool-use-discipline.md +48 -0
  606. package/src/apothem/rules/visual-leverage.md +102 -0
  607. package/src/apothem/schemas/NOTICE.md +9 -0
  608. package/src/apothem/schemas/README.md +104 -0
  609. package/src/apothem/schemas/__init__.py +176 -0
  610. package/src/apothem/schemas/advisory-finding.schema.json +111 -0
  611. package/src/apothem/schemas/agent.schema.json +106 -0
  612. package/src/apothem/schemas/authorship-header.txt +1 -0
  613. package/src/apothem/schemas/cohort-manifest.yaml +248 -0
  614. package/src/apothem/schemas/cohort-metadata-vocabulary.yaml +168 -0
  615. package/src/apothem/schemas/cohort.schema.json +113 -0
  616. package/src/apothem/schemas/command.schema.json +68 -0
  617. package/src/apothem/schemas/compatibility-matrix.yaml +432 -0
  618. package/src/apothem/schemas/context-fragment.schema.json +64 -0
  619. package/src/apothem/schemas/freshness-token-denylist.txt +51 -0
  620. package/src/apothem/schemas/handoff-manifest.yaml +353 -0
  621. package/src/apothem/schemas/header-exceptions.txt +141 -0
  622. package/src/apothem/schemas/header-visibility.yaml +39 -0
  623. package/src/apothem/schemas/learning-signal.schema.json +46 -0
  624. package/src/apothem/schemas/memory-record.schema.json +61 -0
  625. package/src/apothem/schemas/output-style.schema.json +40 -0
  626. package/src/apothem/schemas/plan.schema.json +51 -0
  627. package/src/apothem/schemas/plugin.schema.json +83 -0
  628. package/src/apothem/schemas/profile.example.yaml +70 -0
  629. package/src/apothem/schemas/profile.minimal.yaml +6 -0
  630. package/src/apothem/schemas/profile.schema.json +396 -0
  631. package/src/apothem/schemas/reference-token-denylist.txt +25 -0
  632. package/src/apothem/schemas/skill.schema.json +75 -0
  633. package/src/apothem/skills/README.md +93 -0
  634. package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
  635. package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
  636. package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
  637. package/src/apothem/skills/document-authoring/SKILL.md +118 -0
  638. package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
  639. package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
  640. package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
  641. package/src/apothem/skills/eval-harness/SKILL.md +88 -0
  642. package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
  643. package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
  644. package/src/apothem/skills/plan-suite/SKILL.md +118 -0
  645. package/src/apothem/skills/plan-suite/master_template.md +1324 -0
  646. package/src/apothem/skills/projectify/SKILL.md +117 -0
  647. package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
  648. package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
  649. package/src/apothem/skills/research-suite/SKILL.md +170 -0
  650. package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
  651. package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
  652. package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
  653. package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
  654. package/src/apothem/skills/research-suite/research_template.md +476 -0
  655. package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
  656. package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
  657. package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
  658. package/src/apothem/skills/test-authoring/SKILL.md +85 -0
  659. package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
  660. package/src/apothem/skills/workflow/SKILL.md +139 -0
  661. package/src/apothem/statuslines/README.md +26 -0
  662. package/src/apothem/statuslines/__init__.py +20 -0
  663. package/src/apothem/statuslines/conformity.json +5 -0
  664. package/src/apothem/statuslines/render.py +334 -0
  665. package/src/apothem/statuslines/statusline.md +50 -0
  666. package/src/apothem/templates/README.md +43 -0
  667. package/src/apothem/templates/agents-md-template.md +80 -0
  668. package/src/apothem/templates/consideration-log.md +39 -0
  669. package/src/apothem/templates/expertise-gap-log.md +56 -0
  670. package/src/apothem/templates/master-index-template.md +93 -0
  671. package/src/apothem/templates/potency-map.md +53 -0
  672. package/src/apothem/templates/preservation-audit.md +60 -0
  673. package/src/apothem/templates/question-resolution-audit.md +52 -0
  674. package/src/apothem/templates/trace-matrix-template.md +77 -0
@@ -0,0 +1,450 @@
1
+ # SPDX-License-Identifier: MIT
2
+
3
+ """Advisory: flag plan-suite infra files whose Recommended-Next-Step footer
4
+ drifts from the suite's recorded next pipeline stage.
5
+
6
+ Why this validator exists. Plan-suite infrastructure files (``PROGRESS.md``,
7
+ ``MASTER-PLAN.md``, ``MASTER-INDEX.md``, ``TRACE-MATRIX.md``) can close with a
8
+ ``## Recommended Next Step`` footer naming the pipeline stage the operator
9
+ should run next (e.g. "Run ``/plan-design``"). The ``recommend-next-step``
10
+ matcher only scopes ``commands/``, ``skills/``, and ``phases/`` artifacts, and
11
+ the per-write gate short-circuits ``.plans/`` paths, so nothing mechanically
12
+ verifies that an infra footer still matches the suite's *recorded* next stage.
13
+ Stale footers consequently survive review cycles, directly contradicting the
14
+ suite's own ``PROGRESS.md``.
15
+
16
+ Scope and ground truth. This validator compares a footer's ``/plan-*`` pipeline
17
+ stage against the suite's recorded next ``/plan-*`` stage. It reads that
18
+ recorded stage from ``PROGRESS.md`` in two places, supporting both the
19
+ canonical plan-suite template and the meta-pipeline-tracking variant:
20
+
21
+ - **Tracker** — a table under ``## Pipeline Tracker`` *or* ``## Phase Tracker``;
22
+ the row whose status cell is marked ``NEXT`` supplies its first ``/plan-*``
23
+ token.
24
+ - **Next action** — the Resumption Contract field labelled "Next action",
25
+ written either as a ``- **Next action (imperative):** Run `/plan-X``` bullet
26
+ or as a ``**Next action:** ...`` field. The extraction is bounded to that one
27
+ field so a ``/plan-*`` token in a later field or in ``### Active Decisions``
28
+ never leaks in.
29
+
30
+ The Resumption Contract is authoritative; the tracker NEXT row is the
31
+ cross-check. When both name a ``/plan-*`` stage and disagree, ``PROGRESS.md`` is
32
+ internally inconsistent — itself a finding. The canonical next stage is the
33
+ Next-action stage when present, else the tracker NEXT stage.
34
+
35
+ When there is no machine-readable next *pipeline stage* — e.g. a phase-execution
36
+ suite whose Next action is "Execute Phase 05" and whose tracker lists phase IDs
37
+ rather than ``/plan-*`` stages — the validator cannot compare a footer against a
38
+ ``/plan-*`` ground truth without guessing. Rather than silently passing such a
39
+ suite, it records an advisory ``note`` naming every footer it left unvalidated.
40
+
41
+ Advisory by default. ``_main`` prints the report and exits 0 regardless of
42
+ findings; ``--strict`` exits 2 on findings. The ``check()`` verdict
43
+ (``passed = not findings``) is honest either way; only the exit code is
44
+ advisory. Notes never flip ``passed``.
45
+ """
46
+
47
+ from __future__ import annotations
48
+
49
+ import json
50
+ import re
51
+ import sys
52
+ from dataclasses import asdict, dataclass, field
53
+ from pathlib import Path
54
+ from typing import Final
55
+
56
+ GREP_NAME: Final[str] = "plan-next-step-consistency-grep"
57
+ RULE_ANCHOR: Final[str] = "rules/recommend-next-step.md"
58
+
59
+ EXIT_PASS: Final[int] = 0
60
+ EXIT_FAIL: Final[int] = 2
61
+
62
+ # Opt-in flag that turns the advisory CLI into a gating one.
63
+ STRICT_FLAG: Final[str] = "--strict"
64
+
65
+ # The plan-suite root directory, relative to the inspected project root. The
66
+ # sole canonical project-local plans location is the shared ``.apothem/plans``;
67
+ # a legacy ``.plans`` tree is no longer canonical — operators upgrade it via
68
+ # ``apothem migrate-workspace``.
69
+ APOTHEM_PLANS_RELPATH: Final[tuple[str, str]] = (".apothem", "plans")
70
+
71
+ # The recorded-state source. A suite without it carries no machine-readable
72
+ # next-stage record and is skipped (no false positives on stateless suites).
73
+ PROGRESS_FILENAME: Final[str] = "PROGRESS.md"
74
+
75
+ # Infra files that carry a `## Recommended Next Step` footer pointing at a
76
+ # pipeline stage. PROGRESS.md is both the recorded-state source and an infra
77
+ # surface carrying its own footer (the in-file self-contradiction case).
78
+ INFRA_FILENAMES: Final[tuple[str, ...]] = (
79
+ "PROGRESS.md",
80
+ "MASTER-PLAN.md",
81
+ "MASTER-INDEX.md",
82
+ "TRACE-MATRIX.md",
83
+ )
84
+
85
+ # A pipeline-stage token in either written form: the canonical first-class
86
+ # command form `/plan-<stage>` or the legacy space-separated dispatch form
87
+ # `/plan <stage>`. The stage word is captured from the closed seven-stage set
88
+ # so backticks and trailing punctuation are never captured. Matches are
89
+ # normalized to the canonical `/plan-<stage>` form before comparison.
90
+ _STAGE_RE: Final[re.Pattern[str]] = re.compile(
91
+ r"/plan[ -](spec|generate|design|review|audit|execute|status)\b"
92
+ )
93
+
94
+ # Tracker section headings. The canonical template uses `## Phase Tracker`; the
95
+ # meta-pipeline-tracking variant uses `## Pipeline Tracker`. Both are accepted.
96
+ _PIPELINE_TRACKER_RE: Final[re.Pattern[str]] = re.compile(
97
+ r"^##\s+Pipeline\s+Tracker\s*$"
98
+ )
99
+ _PHASE_TRACKER_RE: Final[re.Pattern[str]] = re.compile(r"^##\s+Phase\s+Tracker\s*$")
100
+ _RESUMPTION_CONTRACT_RE: Final[re.Pattern[str]] = re.compile(
101
+ r"^##\s+Resumption\s+Contract\s*$"
102
+ )
103
+
104
+ # Footer headings. The singular `## Recommended Next Step` is the canonical
105
+ # recommend-next-step block; the multi-action `## Next Steps` form is treated as
106
+ # a footer only when it carries a `**Recommended**` marker (otherwise it is a
107
+ # plain phase-todo list, as the canonical template emits, not a footer).
108
+ _RECOMMENDED_FOOTER_RE: Final[re.Pattern[str]] = re.compile(
109
+ r"^##\s+Recommended\s+Next\s+Step\s*$"
110
+ )
111
+ _NEXT_STEPS_RE: Final[re.Pattern[str]] = re.compile(r"^##\s+Next\s+Steps\s*$")
112
+ _ANY_H2_RE: Final[re.Pattern[str]] = re.compile(r"^##\s+\S")
113
+
114
+ # The Resumption Contract field naming the next imperative action.
115
+ _NEXT_ACTION_RE: Final[re.Pattern[str]] = re.compile(r"next\s+action", re.IGNORECASE)
116
+ # A line that begins a new structural element (heading, list bullet, or bold
117
+ # field label) — the boundary that ends the Next-action field's continuation.
118
+ _FIELD_START_RE: Final[re.Pattern[str]] = re.compile(r"^\s*(?:#{1,6}\s|[-*]\s|\*\*)")
119
+ # A tracker status cell marked NEXT — bolded `**NEXT**` or a cell whose sole
120
+ # alphabetic content is NEXT (e.g. `⏭️ NEXT`). Tight, so prose "next" in an
121
+ # artifact/detail cell does not register a non-NEXT row as the next stage.
122
+ _BOLD_NEXT_RE: Final[re.Pattern[str]] = re.compile(r"\*\*\s*NEXT\s*\*\*", re.IGNORECASE)
123
+ # Recommended marker inside a multi-action `## Next Steps` block.
124
+ _RECOMMENDED_RE: Final[re.Pattern[str]] = re.compile(r"\*\*Recommended\*\*")
125
+
126
+
127
+ @dataclass(frozen=True)
128
+ class Finding:
129
+ """One infra-file footer (or PROGRESS.md marker) inconsistent with state."""
130
+
131
+ surface: str
132
+ suite: str
133
+ detail: str
134
+ rule: str = RULE_ANCHOR
135
+
136
+
137
+ @dataclass(frozen=True)
138
+ class GrepResult:
139
+ """Aggregated walk result across every plan suite under the root."""
140
+
141
+ grep: str
142
+ root: str
143
+ suites_inspected: int
144
+ files_inspected: int
145
+ passed: bool
146
+ advisory: bool
147
+ findings: list[Finding] = field(default_factory=list)
148
+ notes: list[str] = field(default_factory=list)
149
+
150
+ def to_json(self) -> str:
151
+ payload = {
152
+ "grep": self.grep,
153
+ "root": self.root,
154
+ "suites_inspected": self.suites_inspected,
155
+ "files_inspected": self.files_inspected,
156
+ "passed": self.passed,
157
+ "advisory": self.advisory,
158
+ "findings": [asdict(f) for f in self.findings],
159
+ "notes": list(self.notes),
160
+ }
161
+ return json.dumps(payload, indent=2)
162
+
163
+
164
+ def _read_lines(path: Path) -> list[str] | None:
165
+ """Return the file's lines, or None when it is absent or unreadable."""
166
+ try:
167
+ return path.read_text(encoding="utf-8").splitlines()
168
+ except (OSError, UnicodeDecodeError):
169
+ return None
170
+
171
+
172
+ def _rel(path: Path, root: Path) -> str:
173
+ """Return path relative to root as a POSIX string, else the full path."""
174
+ try:
175
+ return path.relative_to(root).as_posix()
176
+ except ValueError:
177
+ return path.as_posix()
178
+
179
+
180
+ def _first_section_body(
181
+ lines: list[str], *heading_res: re.Pattern[str]
182
+ ) -> list[str] | None:
183
+ """Return the lines under the first matching H2 heading, up to the next H2.
184
+
185
+ The first heading in ``heading_res`` to appear in ``lines`` wins. Returns
186
+ None when none of the headings is present (distinct from an empty body).
187
+ """
188
+ start: int | None = None
189
+ for i, line in enumerate(lines):
190
+ if any(heading_re.match(line) for heading_re in heading_res):
191
+ start = i
192
+ break
193
+ if start is None:
194
+ return None
195
+ body: list[str] = []
196
+ for line in lines[start + 1 :]:
197
+ if _ANY_H2_RE.match(line):
198
+ break
199
+ body.append(line)
200
+ return body
201
+
202
+
203
+ def _first_stage(lines: list[str]) -> str | None:
204
+ """Return the first pipeline-stage token across the lines, normalized.
205
+
206
+ Both written forms are recognized; the returned token is always the
207
+ canonical ``/plan-<stage>`` form so comparisons are form-agnostic.
208
+ """
209
+ for line in lines:
210
+ match = _STAGE_RE.search(line)
211
+ if match:
212
+ return f"/plan-{match.group(1)}"
213
+ return None
214
+
215
+
216
+ def _stage_preferring_recommended(body: list[str]) -> str | None:
217
+ """Return the footer stage, preferring the ``**Recommended**`` line."""
218
+ recommended = [line for line in body if _RECOMMENDED_RE.search(line)]
219
+ if recommended:
220
+ stage = _first_stage(recommended)
221
+ if stage is not None:
222
+ return stage
223
+ return _first_stage(body)
224
+
225
+
226
+ def _resumption_next_stage(lines: list[str]) -> str | None:
227
+ """Return the stage named by the Resumption Contract 'Next action' field.
228
+
229
+ The extraction is bounded to the Next-action field: its label line plus any
230
+ wrapped continuation, stopping at the first blank line, heading, list
231
+ bullet, or bold field label. A ``/plan-*`` token in a later field or in
232
+ ``### Active Decisions`` is therefore never picked up. Returns None when the
233
+ field is absent or is an execution imperative with no ``/plan-*`` token.
234
+ """
235
+ body = _first_section_body(lines, _RESUMPTION_CONTRACT_RE)
236
+ if body is None:
237
+ return None
238
+ idx = next(
239
+ (i for i, line in enumerate(body) if _NEXT_ACTION_RE.search(line)),
240
+ None,
241
+ )
242
+ if idx is None:
243
+ return None
244
+ block = [body[idx]]
245
+ for line in body[idx + 1 :]:
246
+ if not line.strip() or _FIELD_START_RE.match(line):
247
+ break
248
+ block.append(line)
249
+ return _first_stage(block)
250
+
251
+
252
+ def _cell_marks_next(cell: str) -> bool:
253
+ """Return True iff a tracker status cell marks the row as the next stage."""
254
+ if _BOLD_NEXT_RE.search(cell):
255
+ return True
256
+ alpha = re.sub(r"[^A-Za-z]", "", cell).upper()
257
+ return alpha == "NEXT"
258
+
259
+
260
+ def _tracker_next_stage(lines: list[str]) -> str | None:
261
+ """Return the stage in the tracker row marked ``NEXT``.
262
+
263
+ Accepts both the ``## Pipeline Tracker`` and ``## Phase Tracker`` headings
264
+ and is column-layout-agnostic: a row qualifies when any cell is a NEXT
265
+ status marker, and the stage is the first ``/plan-*`` token in the row. A
266
+ phase-execution tracker (phase IDs, no ``/plan-*`` tokens) yields None.
267
+ """
268
+ body = _first_section_body(lines, _PIPELINE_TRACKER_RE, _PHASE_TRACKER_RE)
269
+ if body is None:
270
+ return None
271
+ for line in body:
272
+ if "|" not in line:
273
+ continue
274
+ cells = [cell.strip() for cell in line.strip().strip("|").split("|")]
275
+ if not any(_cell_marks_next(cell) for cell in cells):
276
+ continue
277
+ stage = _first_stage([line])
278
+ if stage is not None:
279
+ return stage
280
+ return None
281
+
282
+
283
+ def _footer_stage(lines: list[str]) -> str | None:
284
+ """Return the pipeline stage named in the Recommended-Next-Step footer.
285
+
286
+ Prefers the singular ``## Recommended Next Step`` block. A ``## Next Steps``
287
+ block counts as a footer only when it carries a ``**Recommended**`` marker
288
+ (the multi-action form); a plain ``## Next Steps`` phase-todo list — as the
289
+ canonical template emits — is not a footer and yields None. None when no
290
+ footer names a pipeline stage.
291
+ """
292
+ body = _first_section_body(lines, _RECOMMENDED_FOOTER_RE)
293
+ if body is not None:
294
+ return _stage_preferring_recommended(body)
295
+ body = _first_section_body(lines, _NEXT_STEPS_RE)
296
+ if body is None:
297
+ return None
298
+ if not any(_RECOMMENDED_RE.search(line) for line in body):
299
+ return None
300
+ return _stage_preferring_recommended(body)
301
+
302
+
303
+ def _inspect_suite(
304
+ suite_dir: Path, root: Path
305
+ ) -> tuple[list[Finding], int, list[str]] | None:
306
+ """Inspect one suite; return (findings, files-inspected, notes) or None.
307
+
308
+ Returns None when the suite carries no ``PROGRESS.md`` (no recorded state to
309
+ validate against). Otherwise derives the canonical next stage and compares
310
+ every present infra file's footer against it; an underived canonical with a
311
+ pipeline-stage footer present yields an advisory note rather than a silent
312
+ pass.
313
+ """
314
+ progress = suite_dir / PROGRESS_FILENAME
315
+ if not progress.is_file():
316
+ return None
317
+ progress_lines = _read_lines(progress)
318
+ if progress_lines is None:
319
+ return (
320
+ [
321
+ Finding(
322
+ surface=_rel(progress, root),
323
+ suite=suite_dir.name,
324
+ detail="PROGRESS.md exists but could not be read as UTF-8 text",
325
+ )
326
+ ],
327
+ 0,
328
+ [],
329
+ )
330
+
331
+ findings: list[Finding] = []
332
+ next_action = _resumption_next_stage(progress_lines)
333
+ tracker_next = _tracker_next_stage(progress_lines)
334
+ canonical = next_action or tracker_next
335
+
336
+ # The two recorded-state markers must agree when both are present.
337
+ if next_action and tracker_next and next_action != tracker_next:
338
+ findings.append(
339
+ Finding(
340
+ surface=_rel(progress, root),
341
+ suite=suite_dir.name,
342
+ detail=(
343
+ f"PROGRESS.md internal drift — tracker marks "
344
+ f"`{tracker_next}` NEXT but Resumption Contract 'Next "
345
+ f"action' names `{next_action}`"
346
+ ),
347
+ )
348
+ )
349
+
350
+ source = (
351
+ "Resumption Contract 'Next action'"
352
+ if next_action
353
+ else "Pipeline/Phase Tracker NEXT"
354
+ )
355
+ files_inspected = 0
356
+ unvalidated_footers: list[str] = []
357
+ for fname in INFRA_FILENAMES:
358
+ infra_lines = _read_lines(suite_dir / fname)
359
+ if infra_lines is None:
360
+ continue
361
+ files_inspected += 1
362
+ footer = _footer_stage(infra_lines)
363
+ if footer is None:
364
+ continue
365
+ if canonical is None:
366
+ # No `/plan-*` ground truth to compare against; surface rather than
367
+ # silently pass.
368
+ unvalidated_footers.append(fname)
369
+ continue
370
+ if footer == canonical:
371
+ continue
372
+ findings.append(
373
+ Finding(
374
+ surface=_rel(suite_dir / fname, root),
375
+ suite=suite_dir.name,
376
+ detail=(
377
+ f"`## Recommended Next Step` names `{footer}` but the "
378
+ f"suite's recorded next stage is `{canonical}` ({source})"
379
+ ),
380
+ )
381
+ )
382
+
383
+ notes: list[str] = []
384
+ if canonical is None and unvalidated_footers:
385
+ notes.append(
386
+ f"suite '{suite_dir.name}': recorded next pipeline stage is "
387
+ f"indeterminate (no Pipeline/Phase Tracker NEXT row and no "
388
+ f"`/plan-*` 'Next action'); {len(unvalidated_footers)} footer(s) "
389
+ f"naming a pipeline stage were not validated "
390
+ f"({', '.join(unvalidated_footers)})"
391
+ )
392
+ return findings, files_inspected, notes
393
+
394
+
395
+ def check(root: Path) -> GrepResult:
396
+ """Walk every plan suite under the canonical project-local plans tree.
397
+
398
+ The sole canonical project-local plans location is
399
+ ``<root>/.apothem/plans``; a legacy ``<root>/.plans`` tree is no longer
400
+ canonical — operators upgrade it via ``apothem migrate-workspace``. Suites
401
+ under the canonical tree are inspected for footer drift.
402
+ """
403
+ plans_dirs = (root.joinpath(*APOTHEM_PLANS_RELPATH),)
404
+ findings: list[Finding] = []
405
+ notes: list[str] = []
406
+ suites_inspected = 0
407
+ files_inspected = 0
408
+ for plans_dir in plans_dirs:
409
+ if not plans_dir.is_dir():
410
+ continue
411
+ for suite_dir in sorted(p for p in plans_dir.iterdir() if p.is_dir()):
412
+ outcome = _inspect_suite(suite_dir, root)
413
+ if outcome is None:
414
+ continue
415
+ suite_findings, inspected, suite_notes = outcome
416
+ suites_inspected += 1
417
+ files_inspected += inspected
418
+ findings.extend(suite_findings)
419
+ notes.extend(suite_notes)
420
+ return GrepResult(
421
+ grep=GREP_NAME,
422
+ root=str(root),
423
+ suites_inspected=suites_inspected,
424
+ files_inspected=files_inspected,
425
+ passed=not findings,
426
+ advisory=True,
427
+ findings=findings,
428
+ notes=notes,
429
+ )
430
+
431
+
432
+ def _read_input(argv: list[str]) -> tuple[Path, bool]:
433
+ """Return (root, strict) parsed from argv; root defaults to cwd."""
434
+ strict = STRICT_FLAG in argv
435
+ positional = [arg for arg in argv[1:] if arg != STRICT_FLAG]
436
+ root = Path(positional[0]) if positional else Path.cwd()
437
+ return root, strict
438
+
439
+
440
+ def _main(argv: list[str]) -> int:
441
+ root, strict = _read_input(argv)
442
+ result = check(root)
443
+ print(result.to_json())
444
+ if strict and not result.passed:
445
+ return EXIT_FAIL
446
+ return EXIT_PASS
447
+
448
+
449
+ if __name__ == "__main__":
450
+ sys.exit(_main(sys.argv))