@ahmed-g-gad/apothem 0.1.1

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Files changed (674) hide show
  1. package/CHANGELOG.md +60 -0
  2. package/LICENSE +21 -0
  3. package/LICENSES/MIT.txt +18 -0
  4. package/LICENSES/PSF-2.0.txt +47 -0
  5. package/README.md +549 -0
  6. package/bin/README.md +37 -0
  7. package/bin/apothem.mjs +78 -0
  8. package/package.json +75 -0
  9. package/pyproject.toml +347 -0
  10. package/src/apothem/README.md +52 -0
  11. package/src/apothem/__init__.py +66 -0
  12. package/src/apothem/__main__.py +28 -0
  13. package/src/apothem/_vendor/.keep +0 -0
  14. package/src/apothem/_vendor/__init__.py +25 -0
  15. package/src/apothem/_vendor/attr/__init__.py +104 -0
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  20. package/src/apothem/_vendor/attr/_config.py +31 -0
  21. package/src/apothem/_vendor/attr/_funcs.py +497 -0
  22. package/src/apothem/_vendor/attr/_make.py +3406 -0
  23. package/src/apothem/_vendor/attr/_next_gen.py +674 -0
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  27. package/src/apothem/_vendor/attr/converters.py +162 -0
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  38. package/src/apothem/_vendor/attr.LICENSE +21 -0
  39. package/src/apothem/_vendor/attrs/__init__.py +72 -0
  40. package/src/apothem/_vendor/attrs/__init__.pyi +314 -0
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  46. package/src/apothem/_vendor/attrs/validators.py +3 -0
  47. package/src/apothem/_vendor/attrs.LICENSE +21 -0
  48. package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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  67. package/src/apothem/_vendor/jsonschema/benchmarks/useless_keywords.py +32 -0
  68. package/src/apothem/_vendor/jsonschema/benchmarks/validator_creation.py +14 -0
  69. package/src/apothem/_vendor/jsonschema/cli.py +292 -0
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  71. package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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  76. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/metaschema.json +42 -0
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  90. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft202012/vocabularies/unevaluated +15 -0
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  92. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
  93. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft4/metaschema.json +149 -0
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  95. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
  96. package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
  97. package/src/apothem/_vendor/referencing/__init__.py +7 -0
  98. package/src/apothem/_vendor/referencing/_attrs.py +31 -0
  99. package/src/apothem/_vendor/referencing/_attrs.pyi +21 -0
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  103. package/src/apothem/_vendor/referencing/py.typed +0 -0
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  105. package/src/apothem/_vendor/referencing/typing.py +61 -0
  106. package/src/apothem/_vendor/referencing.LICENSE +19 -0
  107. package/src/apothem/_vendor/rpds/__init__.py +251 -0
  108. package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
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  116. package/src/apothem/_vendor/yaml/emitter.py +1137 -0
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  126. package/src/apothem/_vendor/yaml/serializer.py +110 -0
  127. package/src/apothem/_vendor/yaml/tokens.py +103 -0
  128. package/src/apothem/_vendor/yaml.LICENSE +20 -0
  129. package/src/apothem/agents/README.md +60 -0
  130. package/src/apothem/agents/codebase-explorer.md +91 -0
  131. package/src/apothem/agents/convention-auditor.md +93 -0
  132. package/src/apothem/agents/dependency-auditor.md +97 -0
  133. package/src/apothem/agents/fact-checker.md +84 -0
  134. package/src/apothem/agents/mcp-builder.md +86 -0
  135. package/src/apothem/agents/memory-auditor.md +93 -0
  136. package/src/apothem/agents/prompt-evaluator.md +87 -0
  137. package/src/apothem/agents/quality-gate.md +103 -0
  138. package/src/apothem/agents/refactor-surgeon.md +74 -0
  139. package/src/apothem/agents/research-scout.md +73 -0
  140. package/src/apothem/agents/security-scanner.md +83 -0
  141. package/src/apothem/agents/test-runner.md +84 -0
  142. package/src/apothem/audit/README.md +73 -0
  143. package/src/apothem/audit/_scan_lib.py +182 -0
  144. package/src/apothem/audit/analyze_graph.py +260 -0
  145. package/src/apothem/audit/build_capability_graph.py +607 -0
  146. package/src/apothem/audit/build_inventory.py +657 -0
  147. package/src/apothem/audit/build_plans_provenance.py +997 -0
  148. package/src/apothem/audit/check_links.py +389 -0
  149. package/src/apothem/audit/classify_artifacts.py +381 -0
  150. package/src/apothem/audit/deprecated-tokens.txt +10 -0
  151. package/src/apothem/audit/execute_plans_migration.py +491 -0
  152. package/src/apothem/audit/known-projects.txt +15 -0
  153. package/src/apothem/audit/render_capability_index.py +467 -0
  154. package/src/apothem/audit/render_inventory.py +405 -0
  155. package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
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  194. package/src/apothem/cli/reference_export.py +126 -0
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  585. package/src/apothem/rules/planning-techniques.md +130 -0
  586. package/src/apothem/rules/pre-emission-gate-bars.md +86 -0
  587. package/src/apothem/rules/pre-emission-gate.md +54 -0
  588. package/src/apothem/rules/production-ready-prs-surfaces.md +162 -0
  589. package/src/apothem/rules/production-ready-prs.md +83 -0
  590. package/src/apothem/rules/propagation.md +63 -0
  591. package/src/apothem/rules/recommend-next-step.md +106 -0
  592. package/src/apothem/rules/refactoring-discipline.md +76 -0
  593. package/src/apothem/rules/session-closure.md +44 -0
  594. package/src/apothem/rules/sota-elevation-exemplars.md +76 -0
  595. package/src/apothem/rules/sota-elevation.md +52 -0
  596. package/src/apothem/rules/source-accessibility.md +58 -0
  597. package/src/apothem/rules/surgical-manipulation.md +48 -0
  598. package/src/apothem/rules/systemic-participation-relations.md +108 -0
  599. package/src/apothem/rules/systemic-participation.md +70 -0
  600. package/src/apothem/rules/ten-dimension-check-dimensions.md +52 -0
  601. package/src/apothem/rules/ten-dimension-check.md +59 -0
  602. package/src/apothem/rules/token-budget-discipline.md +81 -0
  603. package/src/apothem/rules/token-efficiency-rewrite-protocol.md +79 -0
  604. package/src/apothem/rules/token-efficiency-rewrite.md +77 -0
  605. package/src/apothem/rules/tool-use-discipline.md +48 -0
  606. package/src/apothem/rules/visual-leverage.md +102 -0
  607. package/src/apothem/schemas/NOTICE.md +9 -0
  608. package/src/apothem/schemas/README.md +104 -0
  609. package/src/apothem/schemas/__init__.py +176 -0
  610. package/src/apothem/schemas/advisory-finding.schema.json +111 -0
  611. package/src/apothem/schemas/agent.schema.json +106 -0
  612. package/src/apothem/schemas/authorship-header.txt +1 -0
  613. package/src/apothem/schemas/cohort-manifest.yaml +248 -0
  614. package/src/apothem/schemas/cohort-metadata-vocabulary.yaml +168 -0
  615. package/src/apothem/schemas/cohort.schema.json +113 -0
  616. package/src/apothem/schemas/command.schema.json +68 -0
  617. package/src/apothem/schemas/compatibility-matrix.yaml +432 -0
  618. package/src/apothem/schemas/context-fragment.schema.json +64 -0
  619. package/src/apothem/schemas/freshness-token-denylist.txt +51 -0
  620. package/src/apothem/schemas/handoff-manifest.yaml +353 -0
  621. package/src/apothem/schemas/header-exceptions.txt +141 -0
  622. package/src/apothem/schemas/header-visibility.yaml +39 -0
  623. package/src/apothem/schemas/learning-signal.schema.json +46 -0
  624. package/src/apothem/schemas/memory-record.schema.json +61 -0
  625. package/src/apothem/schemas/output-style.schema.json +40 -0
  626. package/src/apothem/schemas/plan.schema.json +51 -0
  627. package/src/apothem/schemas/plugin.schema.json +83 -0
  628. package/src/apothem/schemas/profile.example.yaml +70 -0
  629. package/src/apothem/schemas/profile.minimal.yaml +6 -0
  630. package/src/apothem/schemas/profile.schema.json +396 -0
  631. package/src/apothem/schemas/reference-token-denylist.txt +25 -0
  632. package/src/apothem/schemas/skill.schema.json +75 -0
  633. package/src/apothem/skills/README.md +93 -0
  634. package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
  635. package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
  636. package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
  637. package/src/apothem/skills/document-authoring/SKILL.md +118 -0
  638. package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
  639. package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
  640. package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
  641. package/src/apothem/skills/eval-harness/SKILL.md +88 -0
  642. package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
  643. package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
  644. package/src/apothem/skills/plan-suite/SKILL.md +118 -0
  645. package/src/apothem/skills/plan-suite/master_template.md +1324 -0
  646. package/src/apothem/skills/projectify/SKILL.md +117 -0
  647. package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
  648. package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
  649. package/src/apothem/skills/research-suite/SKILL.md +170 -0
  650. package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
  651. package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
  652. package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
  653. package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
  654. package/src/apothem/skills/research-suite/research_template.md +476 -0
  655. package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
  656. package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
  657. package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
  658. package/src/apothem/skills/test-authoring/SKILL.md +85 -0
  659. package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
  660. package/src/apothem/skills/workflow/SKILL.md +139 -0
  661. package/src/apothem/statuslines/README.md +26 -0
  662. package/src/apothem/statuslines/__init__.py +20 -0
  663. package/src/apothem/statuslines/conformity.json +5 -0
  664. package/src/apothem/statuslines/render.py +334 -0
  665. package/src/apothem/statuslines/statusline.md +50 -0
  666. package/src/apothem/templates/README.md +43 -0
  667. package/src/apothem/templates/agents-md-template.md +80 -0
  668. package/src/apothem/templates/consideration-log.md +39 -0
  669. package/src/apothem/templates/expertise-gap-log.md +56 -0
  670. package/src/apothem/templates/master-index-template.md +93 -0
  671. package/src/apothem/templates/potency-map.md +53 -0
  672. package/src/apothem/templates/preservation-audit.md +60 -0
  673. package/src/apothem/templates/question-resolution-audit.md +52 -0
  674. package/src/apothem/templates/trace-matrix-template.md +77 -0
@@ -0,0 +1,612 @@
1
+ # SPDX-License-Identifier: MIT
2
+
3
+ """Per-mode install-entry appliers (write_text, replace_tree, merge_tree, agents, commands)."""
4
+
5
+ from __future__ import annotations
6
+
7
+ import contextlib
8
+ import shutil
9
+ from pathlib import Path
10
+
11
+ from apothem.lib.propagation import (
12
+ InstallEntry,
13
+ resolve_target,
14
+ )
15
+
16
+ from .install_driver_backup import _replace_path, write_bytes_safely
17
+ from .install_driver_converters import (
18
+ _codex_agent_text,
19
+ _gemini_agent_text,
20
+ _gemini_command_text,
21
+ _generated_skill_text,
22
+ _native_markdown_command_text,
23
+ _opencode_agent_text,
24
+ _qwen_agent_text,
25
+ )
26
+ from .install_driver_merge import (
27
+ _apply_operator_owned_file,
28
+ render_content_tokens,
29
+ write_text_safely,
30
+ )
31
+ from .install_driver_pathsafety import (
32
+ _allowed_write_root,
33
+ _root_for,
34
+ _validate_target_path,
35
+ )
36
+ from .install_driver_treeops import (
37
+ _directory_contents_equal,
38
+ _write_single_file_directory,
39
+ replace_tree,
40
+ )
41
+ from .install_driver_types import (
42
+ AuthorizeFn,
43
+ IgnoreFn,
44
+ MaterializationResult,
45
+ _is_excluded_path,
46
+ _result,
47
+ resolve_source,
48
+ )
49
+
50
+
51
+ def apply_write_text(
52
+ entry: InstallEntry,
53
+ *,
54
+ harness_root: Path | None = None,
55
+ project_root: Path | None = None,
56
+ harness_name: str = "manual",
57
+ authorize: AuthorizeFn | None = None,
58
+ ) -> list[MaterializationResult]:
59
+ """Apply a single ``write_text`` install entry as a template copy.
60
+
61
+ Operator-owned targets (e.g. ``settings.json``, ``hooks.json``) route
62
+ through the key-preserving merge with a unified diff and the
63
+ destructive-authorization gate; Apothem-owned targets (e.g. plugin
64
+ metadata) are written directly.
65
+ """
66
+ target = resolve_target(
67
+ entry.target, harness_root=harness_root, project_root=project_root
68
+ )
69
+ src = resolve_source(entry.source)
70
+ if not src.is_file():
71
+ return [
72
+ _result(
73
+ "skipped",
74
+ "write_text",
75
+ target,
76
+ "source file does not exist",
77
+ source=src,
78
+ )
79
+ ]
80
+ root = _root_for(harness_root, project_root)
81
+ allowed_root = _allowed_write_root(harness_root, project_root)
82
+ if entry.ownership_class == "operator-owned":
83
+ return _apply_operator_owned_file(
84
+ entry,
85
+ target=target,
86
+ src=src,
87
+ root=root,
88
+ harness_name=harness_name,
89
+ allowed_root=allowed_root,
90
+ authorize=authorize,
91
+ harness_root=harness_root,
92
+ project_root=project_root,
93
+ )
94
+ return [
95
+ write_text_safely(
96
+ target,
97
+ render_content_tokens(
98
+ src.read_text(encoding="utf-8"),
99
+ harness_root=harness_root,
100
+ project_root=project_root,
101
+ ),
102
+ install_root=root,
103
+ harness_name=harness_name,
104
+ allowed_root=allowed_root,
105
+ )
106
+ ]
107
+
108
+
109
+ def apply_replace_tree(
110
+ entry: InstallEntry,
111
+ ignore: IgnoreFn,
112
+ *,
113
+ harness_root: Path | None = None,
114
+ project_root: Path | None = None,
115
+ harness_name: str = "manual",
116
+ ) -> list[MaterializationResult]:
117
+ """Apply a single ``replace_tree`` install entry."""
118
+ src = resolve_source(entry.source)
119
+ dst = resolve_target(
120
+ entry.target, harness_root=harness_root, project_root=project_root
121
+ )
122
+ return [
123
+ replace_tree(
124
+ src,
125
+ dst,
126
+ ignore,
127
+ install_root=_root_for(harness_root, project_root),
128
+ harness_name=harness_name,
129
+ allowed_root=_allowed_write_root(harness_root, project_root),
130
+ )
131
+ ]
132
+
133
+
134
+ def apply_merge_tree_entries(
135
+ entry: InstallEntry,
136
+ ignore: IgnoreFn,
137
+ exclude: list[str],
138
+ *,
139
+ harness_root: Path | None = None,
140
+ project_root: Path | None = None,
141
+ harness_name: str = "manual",
142
+ ) -> list[MaterializationResult]:
143
+ """Merge a source directory by replacing only its direct child entries."""
144
+ src = resolve_source(entry.source)
145
+ dst = resolve_target(
146
+ entry.target, harness_root=harness_root, project_root=project_root
147
+ )
148
+ if not src.is_dir():
149
+ return [
150
+ _result(
151
+ "skipped",
152
+ "merge_tree_entries",
153
+ dst,
154
+ "source directory does not exist",
155
+ source=src,
156
+ )
157
+ ]
158
+ allowed_root = _allowed_write_root(harness_root, project_root)
159
+ target_error = _validate_target_path(
160
+ dst,
161
+ allowed_root=allowed_root,
162
+ operation="merge_tree_entries",
163
+ )
164
+ if target_error is not None:
165
+ return [target_error]
166
+ dst.mkdir(parents=True, exist_ok=True)
167
+ root = _root_for(harness_root, project_root)
168
+ results: list[MaterializationResult] = []
169
+ for source_path in sorted(src.iterdir()):
170
+ if _is_excluded_path(source_path, exclude):
171
+ continue
172
+ # The copytree ignore callback only runs for nested directory copies.
173
+ if source_path.name in ignore(str(src), [source_path.name]):
174
+ continue
175
+ target = dst / source_path.name
176
+ if source_path.is_dir():
177
+ if _directory_contents_equal(source_path, target, ignore):
178
+ results.append(
179
+ _result(
180
+ "unchanged",
181
+ "merge_tree_entries",
182
+ target,
183
+ "directory already matches",
184
+ source=source_path,
185
+ )
186
+ )
187
+ continue
188
+ removed = _replace_path(
189
+ target,
190
+ install_root=root,
191
+ harness_name=harness_name,
192
+ allowed_root=allowed_root,
193
+ )
194
+ if removed is not None and removed.outcome == "error":
195
+ results.append(removed)
196
+ continue
197
+ shutil.copytree(source_path, target, ignore=ignore)
198
+ results.append(
199
+ _result(
200
+ "updated" if removed else "created",
201
+ "merge_tree_entries",
202
+ target,
203
+ "copied directory entry",
204
+ source=source_path,
205
+ backup_path=(
206
+ Path(removed.backup_path)
207
+ if removed and removed.backup_path
208
+ else None
209
+ ),
210
+ )
211
+ )
212
+ elif source_path.is_file():
213
+ data = source_path.read_bytes()
214
+ if b"${" in data:
215
+ # Render install-time path tokens in text entries (e.g. the
216
+ # statusline command pointing at its installed render script).
217
+ with contextlib.suppress(UnicodeDecodeError):
218
+ data = render_content_tokens(
219
+ data.decode("utf-8"),
220
+ harness_root=harness_root,
221
+ project_root=project_root,
222
+ ).encode("utf-8")
223
+ results.append(
224
+ write_bytes_safely(
225
+ target,
226
+ data,
227
+ install_root=root,
228
+ harness_name=harness_name,
229
+ operation="merge_tree_entries",
230
+ source=source_path,
231
+ allowed_root=allowed_root,
232
+ )
233
+ )
234
+ return results
235
+
236
+
237
+ def apply_command_skills(
238
+ entry: InstallEntry,
239
+ *,
240
+ harness_root: Path | None = None,
241
+ project_root: Path | None = None,
242
+ harness_name: str = "manual",
243
+ ) -> list[MaterializationResult]:
244
+ """Install Markdown command files as native skill directories."""
245
+ src = resolve_source(entry.source)
246
+ dst = resolve_target(
247
+ entry.target, harness_root=harness_root, project_root=project_root
248
+ )
249
+ if not src.is_dir():
250
+ return [
251
+ _result(
252
+ "skipped",
253
+ "command_skills",
254
+ dst,
255
+ "source directory does not exist",
256
+ source=src,
257
+ )
258
+ ]
259
+ allowed_root = _allowed_write_root(harness_root, project_root)
260
+ target_error = _validate_target_path(
261
+ dst,
262
+ allowed_root=allowed_root,
263
+ operation="command_skills",
264
+ )
265
+ if target_error is not None:
266
+ return [target_error]
267
+ dst.mkdir(parents=True, exist_ok=True)
268
+ root = _root_for(harness_root, project_root)
269
+ results: list[MaterializationResult] = []
270
+ for source_path in sorted(src.glob("*.md")):
271
+ if source_path.name in _COHORT_DOC_FILES:
272
+ continue
273
+ skill_dir = dst / source_path.stem
274
+ results.append(
275
+ _write_single_file_directory(
276
+ skill_dir,
277
+ "SKILL.md",
278
+ _generated_skill_text(
279
+ source_path,
280
+ harness_name=harness_name,
281
+ install_root=root,
282
+ ),
283
+ root=root,
284
+ harness_name=harness_name,
285
+ operation="command_skills",
286
+ source=source_path,
287
+ allowed_root=allowed_root,
288
+ )
289
+ )
290
+ return results
291
+
292
+
293
+ #: Documentation companions that live beside cohort members but are never
294
+ #: materialized as members themselves.
295
+ _COHORT_DOC_FILES: frozenset[str] = frozenset({"README.md", "AGENTS.md"})
296
+
297
+
298
+ def apply_codex_agents(
299
+ entry: InstallEntry,
300
+ *,
301
+ harness_root: Path | None = None,
302
+ project_root: Path | None = None,
303
+ harness_name: str = "manual",
304
+ ) -> list[MaterializationResult]:
305
+ """Install Markdown agent files as Codex TOML custom agents."""
306
+ src = resolve_source(entry.source)
307
+ dst = resolve_target(
308
+ entry.target, harness_root=harness_root, project_root=project_root
309
+ )
310
+ if not src.is_dir():
311
+ return [
312
+ _result(
313
+ "skipped",
314
+ "codex_agents",
315
+ dst,
316
+ "source directory does not exist",
317
+ source=src,
318
+ )
319
+ ]
320
+ allowed_root = _allowed_write_root(harness_root, project_root)
321
+ target_error = _validate_target_path(
322
+ dst,
323
+ allowed_root=allowed_root,
324
+ operation="codex_agents",
325
+ )
326
+ if target_error is not None:
327
+ return [target_error]
328
+ dst.mkdir(parents=True, exist_ok=True)
329
+ root = _root_for(harness_root, project_root)
330
+ results: list[MaterializationResult] = []
331
+ for source_path in sorted(src.glob("*.md")):
332
+ if source_path.name in _COHORT_DOC_FILES:
333
+ continue
334
+ stale_markdown = dst / source_path.name
335
+ removed = _replace_path(
336
+ stale_markdown,
337
+ install_root=root,
338
+ harness_name=harness_name,
339
+ allowed_root=allowed_root,
340
+ )
341
+ if removed is not None:
342
+ results.append(removed)
343
+ if removed.outcome == "error":
344
+ continue
345
+ target = dst / f"{source_path.stem}.toml"
346
+ results.append(
347
+ write_bytes_safely(
348
+ target,
349
+ _codex_agent_text(source_path).encode("utf-8"),
350
+ install_root=root,
351
+ harness_name=harness_name,
352
+ operation="codex_agents",
353
+ source=source_path,
354
+ allowed_root=allowed_root,
355
+ )
356
+ )
357
+ return results
358
+
359
+
360
+ def apply_gemini_agents(
361
+ entry: InstallEntry,
362
+ *,
363
+ harness_root: Path | None = None,
364
+ project_root: Path | None = None,
365
+ harness_name: str = "manual",
366
+ ) -> list[MaterializationResult]:
367
+ """Install normalized Gemini CLI Markdown subagent definitions."""
368
+ src = resolve_source(entry.source)
369
+ dst = resolve_target(
370
+ entry.target, harness_root=harness_root, project_root=project_root
371
+ )
372
+ if not src.is_dir():
373
+ return [
374
+ _result(
375
+ "skipped",
376
+ "gemini_agents",
377
+ dst,
378
+ "source directory does not exist",
379
+ source=src,
380
+ )
381
+ ]
382
+ allowed_root = _allowed_write_root(harness_root, project_root)
383
+ target_error = _validate_target_path(
384
+ dst,
385
+ allowed_root=allowed_root,
386
+ operation="gemini_agents",
387
+ )
388
+ if target_error is not None:
389
+ return [target_error]
390
+ dst.mkdir(parents=True, exist_ok=True)
391
+ root = _root_for(harness_root, project_root)
392
+ results: list[MaterializationResult] = []
393
+ for source_path in sorted(src.glob("*.md")):
394
+ if source_path.name in _COHORT_DOC_FILES:
395
+ continue
396
+ target = dst / source_path.name
397
+ results.append(
398
+ write_bytes_safely(
399
+ target,
400
+ _gemini_agent_text(source_path).encode("utf-8"),
401
+ install_root=root,
402
+ harness_name=harness_name,
403
+ operation="gemini_agents",
404
+ source=source_path,
405
+ allowed_root=allowed_root,
406
+ )
407
+ )
408
+ return results
409
+
410
+
411
+ def apply_opencode_agents(
412
+ entry: InstallEntry,
413
+ *,
414
+ harness_root: Path | None = None,
415
+ project_root: Path | None = None,
416
+ harness_name: str = "manual",
417
+ ) -> list[MaterializationResult]:
418
+ """Install normalized OpenCode Markdown subagent definitions."""
419
+ src = resolve_source(entry.source)
420
+ dst = resolve_target(
421
+ entry.target, harness_root=harness_root, project_root=project_root
422
+ )
423
+ if not src.is_dir():
424
+ return [
425
+ _result(
426
+ "skipped",
427
+ "opencode_agents",
428
+ dst,
429
+ "source directory does not exist",
430
+ source=src,
431
+ )
432
+ ]
433
+ allowed_root = _allowed_write_root(harness_root, project_root)
434
+ target_error = _validate_target_path(
435
+ dst,
436
+ allowed_root=allowed_root,
437
+ operation="opencode_agents",
438
+ )
439
+ if target_error is not None:
440
+ return [target_error]
441
+ dst.mkdir(parents=True, exist_ok=True)
442
+ root = _root_for(harness_root, project_root)
443
+ results: list[MaterializationResult] = []
444
+ for source_path in sorted(src.glob("*.md")):
445
+ if source_path.name in _COHORT_DOC_FILES:
446
+ continue
447
+ target = dst / source_path.name
448
+ results.append(
449
+ write_bytes_safely(
450
+ target,
451
+ _opencode_agent_text(source_path).encode("utf-8"),
452
+ install_root=root,
453
+ harness_name=harness_name,
454
+ operation="opencode_agents",
455
+ source=source_path,
456
+ allowed_root=allowed_root,
457
+ )
458
+ )
459
+ return results
460
+
461
+
462
+ def apply_qwen_agents(
463
+ entry: InstallEntry,
464
+ *,
465
+ harness_root: Path | None = None,
466
+ project_root: Path | None = None,
467
+ harness_name: str = "manual",
468
+ ) -> list[MaterializationResult]:
469
+ """Install normalized Qwen Code Markdown subagent definitions."""
470
+ src = resolve_source(entry.source)
471
+ dst = resolve_target(
472
+ entry.target, harness_root=harness_root, project_root=project_root
473
+ )
474
+ if not src.is_dir():
475
+ return [
476
+ _result(
477
+ "skipped",
478
+ "qwen_agents",
479
+ dst,
480
+ "source directory does not exist",
481
+ source=src,
482
+ )
483
+ ]
484
+ allowed_root = _allowed_write_root(harness_root, project_root)
485
+ target_error = _validate_target_path(
486
+ dst,
487
+ allowed_root=allowed_root,
488
+ operation="qwen_agents",
489
+ )
490
+ if target_error is not None:
491
+ return [target_error]
492
+ dst.mkdir(parents=True, exist_ok=True)
493
+ root = _root_for(harness_root, project_root)
494
+ results: list[MaterializationResult] = []
495
+ for source_path in sorted(src.glob("*.md")):
496
+ if source_path.name in _COHORT_DOC_FILES:
497
+ continue
498
+ target = dst / source_path.name
499
+ results.append(
500
+ write_bytes_safely(
501
+ target,
502
+ _qwen_agent_text(source_path).encode("utf-8"),
503
+ install_root=root,
504
+ harness_name=harness_name,
505
+ operation="qwen_agents",
506
+ source=source_path,
507
+ allowed_root=allowed_root,
508
+ )
509
+ )
510
+ return results
511
+
512
+
513
+ def apply_gemini_commands(
514
+ entry: InstallEntry,
515
+ *,
516
+ harness_root: Path | None = None,
517
+ project_root: Path | None = None,
518
+ harness_name: str = "manual",
519
+ ) -> list[MaterializationResult]:
520
+ """Install Markdown command files as Gemini CLI TOML slash commands."""
521
+ src = resolve_source(entry.source)
522
+ dst = resolve_target(
523
+ entry.target, harness_root=harness_root, project_root=project_root
524
+ )
525
+ if not src.is_dir():
526
+ return [
527
+ _result(
528
+ "skipped",
529
+ "gemini_commands",
530
+ dst,
531
+ "source directory does not exist",
532
+ source=src,
533
+ )
534
+ ]
535
+ allowed_root = _allowed_write_root(harness_root, project_root)
536
+ target_error = _validate_target_path(
537
+ dst,
538
+ allowed_root=allowed_root,
539
+ operation="gemini_commands",
540
+ )
541
+ if target_error is not None:
542
+ return [target_error]
543
+ dst.mkdir(parents=True, exist_ok=True)
544
+ root = _root_for(harness_root, project_root)
545
+ results: list[MaterializationResult] = []
546
+ for source_path in sorted(src.glob("*.md")):
547
+ if source_path.name in _COHORT_DOC_FILES:
548
+ continue
549
+ target = dst / f"{source_path.stem}.toml"
550
+ results.append(
551
+ write_bytes_safely(
552
+ target,
553
+ _gemini_command_text(source_path).encode("utf-8"),
554
+ install_root=root,
555
+ harness_name=harness_name,
556
+ operation="gemini_commands",
557
+ source=source_path,
558
+ allowed_root=allowed_root,
559
+ )
560
+ )
561
+ return results
562
+
563
+
564
+ def apply_markdown_commands(
565
+ entry: InstallEntry,
566
+ *,
567
+ harness_root: Path | None = None,
568
+ project_root: Path | None = None,
569
+ harness_name: str = "manual",
570
+ ) -> list[MaterializationResult]:
571
+ """Install Markdown command files as native Markdown slash commands."""
572
+ src = resolve_source(entry.source)
573
+ dst = resolve_target(
574
+ entry.target, harness_root=harness_root, project_root=project_root
575
+ )
576
+ if not src.is_dir():
577
+ return [
578
+ _result(
579
+ "skipped",
580
+ "markdown_commands",
581
+ dst,
582
+ "source directory does not exist",
583
+ source=src,
584
+ )
585
+ ]
586
+ allowed_root = _allowed_write_root(harness_root, project_root)
587
+ target_error = _validate_target_path(
588
+ dst,
589
+ allowed_root=allowed_root,
590
+ operation="markdown_commands",
591
+ )
592
+ if target_error is not None:
593
+ return [target_error]
594
+ dst.mkdir(parents=True, exist_ok=True)
595
+ root = _root_for(harness_root, project_root)
596
+ results: list[MaterializationResult] = []
597
+ for source_path in sorted(src.glob("*.md")):
598
+ if source_path.name in _COHORT_DOC_FILES:
599
+ continue
600
+ target = dst / source_path.name
601
+ results.append(
602
+ write_bytes_safely(
603
+ target,
604
+ _native_markdown_command_text(source_path).encode("utf-8"),
605
+ install_root=root,
606
+ harness_name=harness_name,
607
+ operation="markdown_commands",
608
+ source=source_path,
609
+ allowed_root=allowed_root,
610
+ )
611
+ )
612
+ return results