@ahmed-g-gad/apothem 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +60 -0
- package/LICENSE +21 -0
- package/LICENSES/MIT.txt +18 -0
- package/LICENSES/PSF-2.0.txt +47 -0
- package/README.md +549 -0
- package/bin/README.md +37 -0
- package/bin/apothem.mjs +78 -0
- package/package.json +75 -0
- package/pyproject.toml +347 -0
- package/src/apothem/README.md +52 -0
- package/src/apothem/__init__.py +66 -0
- package/src/apothem/__main__.py +28 -0
- package/src/apothem/_vendor/.keep +0 -0
- package/src/apothem/_vendor/__init__.py +25 -0
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- package/src/apothem/_vendor/attr.LICENSE +21 -0
- package/src/apothem/_vendor/attrs/__init__.py +72 -0
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- package/src/apothem/_vendor/attrs/setters.py +3 -0
- package/src/apothem/_vendor/attrs/validators.py +3 -0
- package/src/apothem/_vendor/attrs.LICENSE +21 -0
- package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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- package/src/apothem/_vendor/jsonschema/benchmarks/json_schema_test_suite.py +12 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/nested_schemas.py +56 -0
- package/src/apothem/_vendor/jsonschema/benchmarks/subcomponents.py +42 -0
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- package/src/apothem/_vendor/jsonschema/exceptions.py +490 -0
- package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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- package/src/apothem/_vendor/jsonschema.LICENSE +19 -0
- package/src/apothem/_vendor/jsonschema_specifications/__init__.py +12 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/vocabularies/applicator +56 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
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- package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
- package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
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- package/src/apothem/_vendor/referencing.LICENSE +19 -0
- package/src/apothem/_vendor/rpds/__init__.py +251 -0
- package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
- package/src/apothem/_vendor/typing_extensions.py +4317 -0
- package/src/apothem/_vendor/vendor.txt +22 -0
- package/src/apothem/_vendor/yaml/__init__.py +389 -0
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- package/src/apothem/_vendor/yaml/constructor.py +748 -0
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- package/src/apothem/_vendor/yaml/dumper.py +61 -0
- package/src/apothem/_vendor/yaml/emitter.py +1137 -0
- package/src/apothem/_vendor/yaml/error.py +74 -0
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- package/src/apothem/agents/README.md +60 -0
- package/src/apothem/agents/codebase-explorer.md +91 -0
- package/src/apothem/agents/convention-auditor.md +93 -0
- package/src/apothem/agents/dependency-auditor.md +97 -0
- package/src/apothem/agents/fact-checker.md +84 -0
- package/src/apothem/agents/mcp-builder.md +86 -0
- package/src/apothem/agents/memory-auditor.md +93 -0
- package/src/apothem/agents/prompt-evaluator.md +87 -0
- package/src/apothem/agents/quality-gate.md +103 -0
- package/src/apothem/agents/refactor-surgeon.md +74 -0
- package/src/apothem/agents/research-scout.md +73 -0
- package/src/apothem/agents/security-scanner.md +83 -0
- package/src/apothem/agents/test-runner.md +84 -0
- package/src/apothem/audit/README.md +73 -0
- package/src/apothem/audit/_scan_lib.py +182 -0
- package/src/apothem/audit/analyze_graph.py +260 -0
- package/src/apothem/audit/build_capability_graph.py +607 -0
- package/src/apothem/audit/build_inventory.py +657 -0
- package/src/apothem/audit/build_plans_provenance.py +997 -0
- package/src/apothem/audit/check_links.py +389 -0
- package/src/apothem/audit/classify_artifacts.py +381 -0
- package/src/apothem/audit/deprecated-tokens.txt +10 -0
- package/src/apothem/audit/execute_plans_migration.py +491 -0
- package/src/apothem/audit/known-projects.txt +15 -0
- package/src/apothem/audit/render_capability_index.py +467 -0
- package/src/apothem/audit/render_inventory.py +405 -0
- package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
- package/src/apothem/audit/scan_ai_surfaces_coarse.py +261 -0
- package/src/apothem/audit/scan_drift_features.py +143 -0
- package/src/apothem/audit/scan_frontmatter.py +293 -0
- package/src/apothem/audit/scan_header_coverage.py +1134 -0
- package/src/apothem/audit/scan_plan_leakage.py +540 -0
- package/src/apothem/audit/scan_plans_discipline.py +188 -0
- package/src/apothem/audit/scan_secrets_pii.py +245 -0
- package/src/apothem/audit/scan_stale_tokens.py +296 -0
- package/src/apothem/audit/synthesize_drift.py +205 -0
- package/src/apothem/benchmarks/README.md +33 -0
- package/src/apothem/benchmarks/__init__.py +3 -0
- package/src/apothem/benchmarks/bench_agents.py +63 -0
- package/src/apothem/benchmarks/bench_hooks.py +93 -0
- package/src/apothem/benchmarks/bench_install.py +58 -0
- package/src/apothem/benchmarks/bench_tests.py +93 -0
- package/src/apothem/benchmarks/bench_validate_ecosystem.py +84 -0
- package/src/apothem/cli/README.md +33 -0
- package/src/apothem/cli/__init__.py +229 -0
- package/src/apothem/cli/_cmd_completion.py +88 -0
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- package/src/apothem/cli/_common_flags.py +90 -0
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- package/src/apothem/cli/_json_formatter.py +21 -0
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- package/src/apothem/commands/research-sources.md +266 -0
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- package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
- package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
- package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
- package/src/apothem/skills/document-authoring/SKILL.md +118 -0
- package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
- package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
- package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
- package/src/apothem/skills/eval-harness/SKILL.md +88 -0
- package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
- package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
- package/src/apothem/skills/plan-suite/SKILL.md +118 -0
- package/src/apothem/skills/plan-suite/master_template.md +1324 -0
- package/src/apothem/skills/projectify/SKILL.md +117 -0
- package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
- package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
- package/src/apothem/skills/research-suite/SKILL.md +170 -0
- package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
- package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
- package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
- package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
- package/src/apothem/skills/research-suite/research_template.md +476 -0
- package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
- package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
- package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
- package/src/apothem/skills/test-authoring/SKILL.md +85 -0
- package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
- package/src/apothem/skills/workflow/SKILL.md +139 -0
- package/src/apothem/statuslines/README.md +26 -0
- package/src/apothem/statuslines/__init__.py +20 -0
- package/src/apothem/statuslines/conformity.json +5 -0
- package/src/apothem/statuslines/render.py +334 -0
- package/src/apothem/statuslines/statusline.md +50 -0
- package/src/apothem/templates/README.md +43 -0
- package/src/apothem/templates/agents-md-template.md +80 -0
- package/src/apothem/templates/consideration-log.md +39 -0
- package/src/apothem/templates/expertise-gap-log.md +56 -0
- package/src/apothem/templates/master-index-template.md +93 -0
- package/src/apothem/templates/potency-map.md +53 -0
- package/src/apothem/templates/preservation-audit.md +60 -0
- package/src/apothem/templates/question-resolution-audit.md +52 -0
- package/src/apothem/templates/trace-matrix-template.md +77 -0
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# SPDX-License-Identifier: MIT
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"""Shared profile→harness projection seam.
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The single place that turns a per-harness-resolved canonical profile into the
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two surfaces a harness adapter materializes:
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- a Markdown *managed-block body* (identity / preferences / rules / seriousness
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/ opted-in behaviors) folded into an instruction anchor via the sentinel
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merge primitives, and
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- a *native-config fragment* (MCP server inventory + preferences) for the
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adapters that render their own config file and own a file MCP surface.
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Every adapter install path routes through :func:`project` so the shared profile
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genuinely reaches harness output — the fix for the core-thesis gap where the
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profile was validated and then discarded.
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"""
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from __future__ import annotations
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from dataclasses import dataclass
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from typing import Any
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from apothem.lib.harness_materializer import (
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MarkdownProfileFields,
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extract_markdown_fields,
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)
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# Human-readable label per enforcement flag, mirroring the schema descriptions.
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# Default-off flags emit no prose, so a clean install renders no behaviors block.
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_ENFORCEMENT_LABELS: dict[str, str] = {
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"sprints": "Sprint apparatus for non-trivial multi-step work",
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"agent_teams": "Parallel agent-team dispatch for parallelizable work",
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"multitasking": "Parallel multi-task execution",
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"continuous_execution": "Continuous multi-step advancement across natural boundaries",
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"learning_loop": "Continuous-learning capture and pattern promotion",
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}
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_MANAGED_BLOCK_NOTE = (
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"Managed by Apothem from the shared profile. Edits inside the sentinels are "
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"overwritten on the next `apothem install`; change the shared profile instead."
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)
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@dataclass(frozen=True)
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class ProjectedSurfaces:
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"""The surfaces a harness adapter materializes from the shared profile.
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``managed_block_body`` is the Markdown folded into an instruction anchor
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(identity / preferences / rules / opted-in behaviors / an MCP-server
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reference list). The MCP inventory is *materialized* into native config only
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by the adapters that render their own config file (opencode, qwen_code,
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hermes), via the ``mcp_servers_for`` / ``render_mcp_*`` helpers; for every
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other adapter it appears as instruction-context reference in this block.
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"""
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managed_block_body: str
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def project(profile_for_harness: dict[str, Any], harness_id: str) -> ProjectedSurfaces:
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"""Project a per-harness-resolved profile into the managed-block surface.
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*profile_for_harness* is the output of ``CanonicalProfile.for_harness(...)``:
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a merged dict carrying identity / preferences / rules / seriousness /
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enforcement / mcp_servers. *harness_id* is the public adapter id, reserved
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for harness-specific shaping; the body shape is currently uniform.
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"""
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del harness_id # reserved for per-harness shaping; body is uniform today
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fields = extract_markdown_fields(profile_for_harness)
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mcp_names = sorted((profile_for_harness.get("mcp_servers") or {}).keys())
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return ProjectedSurfaces(
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managed_block_body=_render_managed_block_body(fields, mcp_names),
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)
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def _render_managed_block_body(
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fields: MarkdownProfileFields, mcp_names: list[str]
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) -> str:
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"""Render the managed-block Markdown, omitting fields with no value."""
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lines: list[str] = [
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"# Apothem Shared Profile",
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"",
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_MANAGED_BLOCK_NOTE,
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"",
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"## Operator",
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"",
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f"- **Name:** {fields.name}" if fields.name else "- **Name:** (unset)",
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f"- **Role:** {fields.role}",
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]
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if fields.email:
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lines.append(f"- **Email:** {fields.email}")
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if fields.website:
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lines.append(f"- **Website:** {fields.website}")
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if fields.github:
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lines.append(f"- **GitHub:** @{fields.github}")
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lines += [
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"",
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"## Preferences",
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"",
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f"- **Primary language:** {fields.language}",
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f"- **Response style:** {fields.style}",
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f"- **Governance seriousness:** {fields.seriousness}",
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]
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if fields.rules:
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lines += ["", "## Custom Rules", ""]
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lines += [f"- {rule}" for rule in fields.rules]
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opted_in = [
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label
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for key, label in _ENFORCEMENT_LABELS.items()
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if fields.enforcement.get(key)
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]
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if opted_in:
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lines += ["", "## Opted-in Behaviors", ""]
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lines += [f"- {label}" for label in opted_in]
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if mcp_names:
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lines += [
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"",
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"## MCP Servers",
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"",
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"Configured MCP servers (materialized into the harnesses with a native"
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" MCP config surface; named here as reference for the rest):",
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]
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lines += [f"- {name}" for name in mcp_names]
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return "\n".join(lines)
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def mcp_servers_for(profile_for_harness: dict[str, Any]) -> dict[str, dict[str, Any]]:
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"""Return the profile's MCP inventory keyed by name (canonical shape).
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The canonical per-server dict carries ``transport`` plus the
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transport-relevant keys (``command``/``args``/``env`` for stdio, ``url`` for
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http-family). Per-harness materializers translate this into their vendor MCP
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shape via the ``render_mcp_*`` helpers below.
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"""
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servers = profile_for_harness.get("mcp_servers") or {}
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return {name: dict(spec) for name, spec in servers.items()}
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def render_mcp_standard(
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servers: dict[str, dict[str, Any]],
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) -> dict[str, dict[str, Any]]:
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"""Render MCP servers in the standard ``mcpServers`` shape (qwen-code, claude).
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stdio → ``command``/``args``/``env``; ``sse``/``http`` → ``url``;
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``streamable-http`` → ``httpUrl`` (the streamable endpoint key).
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"""
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rendered: dict[str, dict[str, Any]] = {}
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for name, spec in servers.items():
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transport = spec.get("transport", "stdio")
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entry: dict[str, Any] = {}
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if transport == "stdio":
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if spec.get("command"):
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entry["command"] = spec["command"]
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if spec.get("args"):
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entry["args"] = spec["args"]
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if spec.get("env"):
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entry["env"] = spec["env"]
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elif transport == "streamable-http":
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entry["httpUrl"] = spec.get("url", "")
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else:
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entry["url"] = spec.get("url", "")
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rendered[name] = entry
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return rendered
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def render_mcp_opencode(
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servers: dict[str, dict[str, Any]],
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) -> dict[str, dict[str, Any]]:
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"""Render MCP servers in opencode's ``mcp`` shape.
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stdio → ``{type: local, command: [cmd, *args], environment, enabled}``;
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http-family → ``{type: remote, url, enabled}``.
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"""
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rendered: dict[str, dict[str, Any]] = {}
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for name, spec in servers.items():
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if spec.get("transport", "stdio") == "stdio":
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command = [spec["command"]] if spec.get("command") else []
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command += list(spec.get("args", []))
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entry: dict[str, Any] = {
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"type": "local",
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"command": command,
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"enabled": True,
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}
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if spec.get("env"):
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entry["environment"] = spec["env"]
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else:
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entry = {"type": "remote", "url": spec.get("url", ""), "enabled": True}
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rendered[name] = entry
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return rendered
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__all__ = [
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"ProjectedSurfaces",
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"mcp_servers_for",
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"project",
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"render_mcp_opencode",
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"render_mcp_standard",
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]
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