@ahmed-g-gad/apothem 0.1.1

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Files changed (674) hide show
  1. package/CHANGELOG.md +60 -0
  2. package/LICENSE +21 -0
  3. package/LICENSES/MIT.txt +18 -0
  4. package/LICENSES/PSF-2.0.txt +47 -0
  5. package/README.md +549 -0
  6. package/bin/README.md +37 -0
  7. package/bin/apothem.mjs +78 -0
  8. package/package.json +75 -0
  9. package/pyproject.toml +347 -0
  10. package/src/apothem/README.md +52 -0
  11. package/src/apothem/__init__.py +66 -0
  12. package/src/apothem/__main__.py +28 -0
  13. package/src/apothem/_vendor/.keep +0 -0
  14. package/src/apothem/_vendor/__init__.py +25 -0
  15. package/src/apothem/_vendor/attr/__init__.py +104 -0
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  20. package/src/apothem/_vendor/attr/_config.py +31 -0
  21. package/src/apothem/_vendor/attr/_funcs.py +497 -0
  22. package/src/apothem/_vendor/attr/_make.py +3406 -0
  23. package/src/apothem/_vendor/attr/_next_gen.py +674 -0
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  27. package/src/apothem/_vendor/attr/converters.py +162 -0
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  38. package/src/apothem/_vendor/attr.LICENSE +21 -0
  39. package/src/apothem/_vendor/attrs/__init__.py +72 -0
  40. package/src/apothem/_vendor/attrs/__init__.pyi +314 -0
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  46. package/src/apothem/_vendor/attrs/validators.py +3 -0
  47. package/src/apothem/_vendor/attrs.LICENSE +21 -0
  48. package/src/apothem/_vendor/jsonschema/__init__.py +120 -0
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  67. package/src/apothem/_vendor/jsonschema/benchmarks/useless_keywords.py +32 -0
  68. package/src/apothem/_vendor/jsonschema/benchmarks/validator_creation.py +14 -0
  69. package/src/apothem/_vendor/jsonschema/cli.py +292 -0
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  71. package/src/apothem/_vendor/jsonschema/protocols.py +230 -0
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  76. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft201909/metaschema.json +42 -0
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  90. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft202012/vocabularies/unevaluated +15 -0
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  92. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft3/metaschema.json +172 -0
  93. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft4/metaschema.json +149 -0
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  95. package/src/apothem/_vendor/jsonschema_specifications/schemas/draft7/metaschema.json +166 -0
  96. package/src/apothem/_vendor/jsonschema_specifications.LICENSE +19 -0
  97. package/src/apothem/_vendor/referencing/__init__.py +7 -0
  98. package/src/apothem/_vendor/referencing/_attrs.py +31 -0
  99. package/src/apothem/_vendor/referencing/_attrs.pyi +21 -0
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  103. package/src/apothem/_vendor/referencing/py.typed +0 -0
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  105. package/src/apothem/_vendor/referencing/typing.py +61 -0
  106. package/src/apothem/_vendor/referencing.LICENSE +19 -0
  107. package/src/apothem/_vendor/rpds/__init__.py +251 -0
  108. package/src/apothem/_vendor/typing_extensions.LICENSE +279 -0
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  116. package/src/apothem/_vendor/yaml/emitter.py +1137 -0
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  126. package/src/apothem/_vendor/yaml/serializer.py +110 -0
  127. package/src/apothem/_vendor/yaml/tokens.py +103 -0
  128. package/src/apothem/_vendor/yaml.LICENSE +20 -0
  129. package/src/apothem/agents/README.md +60 -0
  130. package/src/apothem/agents/codebase-explorer.md +91 -0
  131. package/src/apothem/agents/convention-auditor.md +93 -0
  132. package/src/apothem/agents/dependency-auditor.md +97 -0
  133. package/src/apothem/agents/fact-checker.md +84 -0
  134. package/src/apothem/agents/mcp-builder.md +86 -0
  135. package/src/apothem/agents/memory-auditor.md +93 -0
  136. package/src/apothem/agents/prompt-evaluator.md +87 -0
  137. package/src/apothem/agents/quality-gate.md +103 -0
  138. package/src/apothem/agents/refactor-surgeon.md +74 -0
  139. package/src/apothem/agents/research-scout.md +73 -0
  140. package/src/apothem/agents/security-scanner.md +83 -0
  141. package/src/apothem/agents/test-runner.md +84 -0
  142. package/src/apothem/audit/README.md +73 -0
  143. package/src/apothem/audit/_scan_lib.py +182 -0
  144. package/src/apothem/audit/analyze_graph.py +260 -0
  145. package/src/apothem/audit/build_capability_graph.py +607 -0
  146. package/src/apothem/audit/build_inventory.py +657 -0
  147. package/src/apothem/audit/build_plans_provenance.py +997 -0
  148. package/src/apothem/audit/check_links.py +389 -0
  149. package/src/apothem/audit/classify_artifacts.py +381 -0
  150. package/src/apothem/audit/deprecated-tokens.txt +10 -0
  151. package/src/apothem/audit/execute_plans_migration.py +491 -0
  152. package/src/apothem/audit/known-projects.txt +15 -0
  153. package/src/apothem/audit/render_capability_index.py +467 -0
  154. package/src/apothem/audit/render_inventory.py +405 -0
  155. package/src/apothem/audit/scan_ai_surfaces.py +1125 -0
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  194. package/src/apothem/cli/reference_export.py +126 -0
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  585. package/src/apothem/rules/planning-techniques.md +130 -0
  586. package/src/apothem/rules/pre-emission-gate-bars.md +86 -0
  587. package/src/apothem/rules/pre-emission-gate.md +54 -0
  588. package/src/apothem/rules/production-ready-prs-surfaces.md +162 -0
  589. package/src/apothem/rules/production-ready-prs.md +83 -0
  590. package/src/apothem/rules/propagation.md +63 -0
  591. package/src/apothem/rules/recommend-next-step.md +106 -0
  592. package/src/apothem/rules/refactoring-discipline.md +76 -0
  593. package/src/apothem/rules/session-closure.md +44 -0
  594. package/src/apothem/rules/sota-elevation-exemplars.md +76 -0
  595. package/src/apothem/rules/sota-elevation.md +52 -0
  596. package/src/apothem/rules/source-accessibility.md +58 -0
  597. package/src/apothem/rules/surgical-manipulation.md +48 -0
  598. package/src/apothem/rules/systemic-participation-relations.md +108 -0
  599. package/src/apothem/rules/systemic-participation.md +70 -0
  600. package/src/apothem/rules/ten-dimension-check-dimensions.md +52 -0
  601. package/src/apothem/rules/ten-dimension-check.md +59 -0
  602. package/src/apothem/rules/token-budget-discipline.md +81 -0
  603. package/src/apothem/rules/token-efficiency-rewrite-protocol.md +79 -0
  604. package/src/apothem/rules/token-efficiency-rewrite.md +77 -0
  605. package/src/apothem/rules/tool-use-discipline.md +48 -0
  606. package/src/apothem/rules/visual-leverage.md +102 -0
  607. package/src/apothem/schemas/NOTICE.md +9 -0
  608. package/src/apothem/schemas/README.md +104 -0
  609. package/src/apothem/schemas/__init__.py +176 -0
  610. package/src/apothem/schemas/advisory-finding.schema.json +111 -0
  611. package/src/apothem/schemas/agent.schema.json +106 -0
  612. package/src/apothem/schemas/authorship-header.txt +1 -0
  613. package/src/apothem/schemas/cohort-manifest.yaml +248 -0
  614. package/src/apothem/schemas/cohort-metadata-vocabulary.yaml +168 -0
  615. package/src/apothem/schemas/cohort.schema.json +113 -0
  616. package/src/apothem/schemas/command.schema.json +68 -0
  617. package/src/apothem/schemas/compatibility-matrix.yaml +432 -0
  618. package/src/apothem/schemas/context-fragment.schema.json +64 -0
  619. package/src/apothem/schemas/freshness-token-denylist.txt +51 -0
  620. package/src/apothem/schemas/handoff-manifest.yaml +353 -0
  621. package/src/apothem/schemas/header-exceptions.txt +141 -0
  622. package/src/apothem/schemas/header-visibility.yaml +39 -0
  623. package/src/apothem/schemas/learning-signal.schema.json +46 -0
  624. package/src/apothem/schemas/memory-record.schema.json +61 -0
  625. package/src/apothem/schemas/output-style.schema.json +40 -0
  626. package/src/apothem/schemas/plan.schema.json +51 -0
  627. package/src/apothem/schemas/plugin.schema.json +83 -0
  628. package/src/apothem/schemas/profile.example.yaml +70 -0
  629. package/src/apothem/schemas/profile.minimal.yaml +6 -0
  630. package/src/apothem/schemas/profile.schema.json +396 -0
  631. package/src/apothem/schemas/reference-token-denylist.txt +25 -0
  632. package/src/apothem/schemas/skill.schema.json +75 -0
  633. package/src/apothem/skills/README.md +93 -0
  634. package/src/apothem/skills/dependency-upgrade/SKILL.md +105 -0
  635. package/src/apothem/skills/dev-toolkit/SKILL.md +120 -0
  636. package/src/apothem/skills/diagram-authoring/SKILL.md +113 -0
  637. package/src/apothem/skills/document-authoring/SKILL.md +118 -0
  638. package/src/apothem/skills/ecosystem-audit/SKILL.md +108 -0
  639. package/src/apothem/skills/ecosystem-audit/references/audit-fortress.md +85 -0
  640. package/src/apothem/skills/ecosystem-audit/references/procedure.md +162 -0
  641. package/src/apothem/skills/eval-harness/SKILL.md +88 -0
  642. package/src/apothem/skills/incident-runbook/SKILL.md +92 -0
  643. package/src/apothem/skills/multi-source-research/SKILL.md +90 -0
  644. package/src/apothem/skills/plan-suite/SKILL.md +118 -0
  645. package/src/apothem/skills/plan-suite/master_template.md +1324 -0
  646. package/src/apothem/skills/projectify/SKILL.md +117 -0
  647. package/src/apothem/skills/prompt-engineering/SKILL.md +122 -0
  648. package/src/apothem/skills/refactor-extract/SKILL.md +85 -0
  649. package/src/apothem/skills/research-suite/SKILL.md +170 -0
  650. package/src/apothem/skills/research-suite/references/directory-structure.md +47 -0
  651. package/src/apothem/skills/research-suite/references/lifecycle.md +67 -0
  652. package/src/apothem/skills/research-suite/references/principal-investigator-framework.md +37 -0
  653. package/src/apothem/skills/research-suite/references/rigor-mandates.md +30 -0
  654. package/src/apothem/skills/research-suite/research_template.md +476 -0
  655. package/src/apothem/skills/secret-rotation/SKILL.md +87 -0
  656. package/src/apothem/skills/source-synthesis/SKILL.md +92 -0
  657. package/src/apothem/skills/surgical-guard/SKILL.md +118 -0
  658. package/src/apothem/skills/test-authoring/SKILL.md +85 -0
  659. package/src/apothem/skills/vuln-triage/SKILL.md +91 -0
  660. package/src/apothem/skills/workflow/SKILL.md +139 -0
  661. package/src/apothem/statuslines/README.md +26 -0
  662. package/src/apothem/statuslines/__init__.py +20 -0
  663. package/src/apothem/statuslines/conformity.json +5 -0
  664. package/src/apothem/statuslines/render.py +334 -0
  665. package/src/apothem/statuslines/statusline.md +50 -0
  666. package/src/apothem/templates/README.md +43 -0
  667. package/src/apothem/templates/agents-md-template.md +80 -0
  668. package/src/apothem/templates/consideration-log.md +39 -0
  669. package/src/apothem/templates/expertise-gap-log.md +56 -0
  670. package/src/apothem/templates/master-index-template.md +93 -0
  671. package/src/apothem/templates/potency-map.md +53 -0
  672. package/src/apothem/templates/preservation-audit.md +60 -0
  673. package/src/apothem/templates/question-resolution-audit.md +52 -0
  674. package/src/apothem/templates/trace-matrix-template.md +77 -0
@@ -0,0 +1,327 @@
1
+ # SPDX-License-Identifier: MIT
2
+
3
+ """``apothem install`` + ``quickstart`` + the continuous-form aliases."""
4
+
5
+ from __future__ import annotations
6
+
7
+ import click
8
+
9
+ import apothem.cli as _pkg
10
+ from apothem.cli import main
11
+ from apothem.cli._common_flags import (
12
+ common_options,
13
+ get_console,
14
+ resolve_format,
15
+ )
16
+ from apothem.cli._epilogs import (
17
+ _EP_INSTALL,
18
+ _EP_QUICKSTART,
19
+ )
20
+ from apothem.cli._helpers import (
21
+ _CliUserError,
22
+ _complete_harness,
23
+ _emit_expected_error,
24
+ _harness_option,
25
+ _load_profile,
26
+ _placeholder_identity_fields,
27
+ _profile_option,
28
+ _profile_scaffold_text,
29
+ _project_option,
30
+ _resolve_profile_path,
31
+ _write_profile_text_safely,
32
+ )
33
+ from apothem.cli._json_formatter import emit_json
34
+ from apothem.cli._materialize import _materialize
35
+
36
+
37
+ @main.command(epilog=_EP_INSTALL)
38
+ @_harness_option
39
+ @_profile_option
40
+ @click.option(
41
+ "--dry-run",
42
+ is_flag=True,
43
+ help="Preview install without writing files.",
44
+ )
45
+ @click.option(
46
+ "--clean",
47
+ "--fresh",
48
+ "clean",
49
+ is_flag=True,
50
+ help="Opt-in clean slate: back up and remove the prior install state "
51
+ "(~/.claude, ~/.codex, ~/.agents, ~/.config/apothem) before installing.",
52
+ )
53
+ @click.option(
54
+ "--yes",
55
+ "assume_yes",
56
+ is_flag=True,
57
+ help="Skip per-target confirmation during a clean-slate removal "
58
+ "(required for non-interactive --clean runs).",
59
+ )
60
+ @_project_option
61
+ @common_options
62
+ def install(
63
+ harness: str,
64
+ profile: str | None,
65
+ dry_run: bool,
66
+ clean: bool,
67
+ assume_yes: bool,
68
+ project: str | None,
69
+ quiet: bool,
70
+ verbose: bool,
71
+ output_format: str,
72
+ no_color: bool,
73
+ json_flag: bool,
74
+ ) -> None:
75
+ """Install a harness adapter configuration."""
76
+ _materialize(
77
+ harness,
78
+ profile,
79
+ dry_run,
80
+ "install",
81
+ "Installed",
82
+ fmt=resolve_format(output_format, json_flag),
83
+ quiet=quiet,
84
+ no_color=no_color,
85
+ project=project,
86
+ clean=clean,
87
+ assume_yes=assume_yes,
88
+ verbose=verbose,
89
+ )
90
+
91
+
92
+ @main.command(epilog=_EP_QUICKSTART)
93
+ @click.option(
94
+ "--harness",
95
+ default="all",
96
+ metavar="NAME",
97
+ help="Harness adapter name or 'all' for every supported harness (default: all).",
98
+ shell_complete=_complete_harness,
99
+ )
100
+ @_profile_option
101
+ @click.option(
102
+ "--yes",
103
+ "assume_yes",
104
+ is_flag=True,
105
+ help="Run the full guided sequence non-interactively (skip every prompt).",
106
+ )
107
+ @click.option(
108
+ "--project",
109
+ default=".",
110
+ metavar="PATH",
111
+ help="Project root for project-scope harnesses (default: current directory).",
112
+ )
113
+ @common_options
114
+ def quickstart(
115
+ harness: str,
116
+ profile: str | None,
117
+ assume_yes: bool,
118
+ project: str | None,
119
+ quiet: bool,
120
+ verbose: bool,
121
+ output_format: str,
122
+ no_color: bool,
123
+ json_flag: bool,
124
+ ) -> None:
125
+ """Guided first run: ensure a profile, preview the writes, then install.
126
+
127
+ Walks a new operator through the canonical path in one linear flow — create a
128
+ starter profile if none exists (with a personalize nudge), preview the files
129
+ each harness will write (project root vs your home directory), confirm, then
130
+ install with the grouped capability-note output — and ends with the
131
+ recommended next commands. ``--yes`` runs the whole sequence
132
+ non-interactively; ``--format json`` emits one structured summary of every
133
+ step. It composes the install building blocks; it does not duplicate them.
134
+ """
135
+ fmt = resolve_format(output_format, json_flag)
136
+ con = get_console(no_color=no_color, quiet=quiet)
137
+ profile_path = _resolve_profile_path(profile)
138
+ steps: list[dict[str, object]] = []
139
+
140
+ # Step 1 — ensure a profile exists (offer to scaffold one if it is missing).
141
+ created = False
142
+ if not profile_path.is_file():
143
+ may_create = assume_yes or fmt == "json" or not _pkg._stdin_is_interactive()
144
+ if not may_create:
145
+ may_create = click.confirm(
146
+ f"No profile at {profile_path}. Create a starter profile?",
147
+ default=True,
148
+ )
149
+ if not may_create:
150
+ _emit_expected_error(
151
+ command="quickstart",
152
+ fmt=fmt,
153
+ harness=harness,
154
+ profile_path=profile_path,
155
+ error=_CliUserError(
156
+ code="profile.required",
157
+ message="Apothem quickstart needs a profile.",
158
+ field="profile",
159
+ reason="no profile exists and creation was declined",
160
+ fix="Run 'apothem profile init', or re-run quickstart and "
161
+ "accept profile creation.",
162
+ ).to_dict(),
163
+ )
164
+ return
165
+ try:
166
+ _write_profile_text_safely(
167
+ profile_path, _profile_scaffold_text(), operation="quickstart"
168
+ )
169
+ except _CliUserError as exc:
170
+ _emit_expected_error(
171
+ command="quickstart",
172
+ fmt=fmt,
173
+ harness=harness,
174
+ profile_path=profile_path,
175
+ error=exc.to_dict(),
176
+ )
177
+ return
178
+ except OSError as exc:
179
+ _emit_expected_error(
180
+ command="quickstart",
181
+ fmt=fmt,
182
+ harness=harness,
183
+ profile_path=profile_path,
184
+ error=_CliUserError(
185
+ code="profile.write_failed",
186
+ message="Apothem quickstart could not create a profile.",
187
+ field="profile",
188
+ reason=str(exc),
189
+ fix="Check the profile path and directory permissions.",
190
+ ).to_dict(),
191
+ )
192
+ return
193
+ created = True
194
+
195
+ placeholder = _placeholder_identity_fields(_load_profile(profile_path))
196
+ if fmt != "json" and created:
197
+ con.print(f"[green]✓[/] Created a starter profile at [cyan]{profile_path}[/]")
198
+ if placeholder:
199
+ named = ", ".join(placeholder)
200
+ con.print(
201
+ f"[yellow]Personalize[/] the identity ({named}) — edit the "
202
+ f"profile or run 'apothem profile set identity.name \"Your Name\"'."
203
+ )
204
+ steps.append(
205
+ {
206
+ "step": "profile",
207
+ "outcome": "created" if created else "existing",
208
+ "path": str(profile_path),
209
+ "placeholder_identity": placeholder,
210
+ }
211
+ )
212
+
213
+ verify_cmd = f"apothem verify --harness {harness}"
214
+ if harness.strip().lower() == "all":
215
+ verify_cmd += " --project ."
216
+ recommended = [verify_cmd, "apothem doctor"]
217
+
218
+ # Steps 2-4 — preview + confirm + install, composed from the install path
219
+ # (blast-radius preview/confirm, placeholder advisory, and grouped notes all
220
+ # live in ``_materialize``; quickstart never reimplements them).
221
+ if fmt == "json":
222
+ sink: list[dict[str, object]] = []
223
+ _materialize(
224
+ harness,
225
+ profile,
226
+ False,
227
+ "install",
228
+ "Installed",
229
+ fmt="json",
230
+ quiet=quiet,
231
+ no_color=no_color,
232
+ project=project,
233
+ assume_yes=assume_yes,
234
+ verbose=verbose,
235
+ payload_sink=sink,
236
+ )
237
+ if not sink:
238
+ # The install step failed; ``_materialize`` already emitted the error
239
+ # envelope (one JSON document) — do not emit a second.
240
+ return
241
+ install_payload = sink[0]
242
+ steps.append(
243
+ {
244
+ "step": "install",
245
+ "status": install_payload.get("status"),
246
+ "harness": harness,
247
+ "files_written": install_payload.get("files_written"),
248
+ "warnings": install_payload.get("warnings"),
249
+ "results": install_payload.get("results"),
250
+ }
251
+ )
252
+ steps.append({"step": "recommend", "next": recommended})
253
+ emit_json(
254
+ {
255
+ "status": install_payload.get("status", "success"),
256
+ "command": "quickstart",
257
+ "profile_path": str(profile_path),
258
+ "steps": steps,
259
+ "recommended_next": recommended,
260
+ }
261
+ )
262
+ return
263
+
264
+ _materialize(
265
+ harness,
266
+ profile,
267
+ False,
268
+ "install",
269
+ "Installed",
270
+ fmt="plain",
271
+ quiet=quiet,
272
+ no_color=no_color,
273
+ project=project,
274
+ assume_yes=assume_yes,
275
+ verbose=verbose,
276
+ )
277
+ if not quiet:
278
+ con.print("\n[bold]Recommended next step:[/]")
279
+ con.print(f" Confirm the install: [cyan]{recommended[0]}[/]")
280
+ con.print(f" Check system health: [cyan]{recommended[1]}[/]")
281
+
282
+
283
+ def _make_installing_alias(name: str) -> click.Command:
284
+ """Build the ``Installing`` / ``installing`` continuous-form alias."""
285
+
286
+ @click.command(name=name, epilog=_EP_INSTALL, hidden=True)
287
+ @_harness_option
288
+ @_profile_option
289
+ @click.option(
290
+ "--dry-run",
291
+ is_flag=True,
292
+ help="Preview install without writing files.",
293
+ )
294
+ @_project_option
295
+ @common_options
296
+ def _alias(
297
+ harness: str,
298
+ profile: str | None,
299
+ dry_run: bool,
300
+ project: str | None,
301
+ quiet: bool,
302
+ verbose: bool,
303
+ output_format: str,
304
+ no_color: bool,
305
+ json_flag: bool,
306
+ ) -> None:
307
+ """Alias for install (continuous form). Identical behavior."""
308
+ _materialize(
309
+ harness,
310
+ profile,
311
+ dry_run,
312
+ "install",
313
+ "Installed",
314
+ fmt=resolve_format(output_format, json_flag),
315
+ quiet=quiet,
316
+ no_color=no_color,
317
+ project=project,
318
+ verbose=verbose,
319
+ )
320
+
321
+ return _alias
322
+
323
+
324
+ main.add_command(_make_installing_alias("Installing"))
325
+
326
+
327
+ main.add_command(_make_installing_alias("installing"))
@@ -0,0 +1,143 @@
1
+ # SPDX-License-Identifier: MIT
2
+
3
+ """``apothem migrate-workspace`` — collapse a legacy layout into shared ``.apothem``."""
4
+
5
+ from __future__ import annotations
6
+
7
+ import sys
8
+ from pathlib import Path
9
+
10
+ import click
11
+
12
+ from apothem.cli import main
13
+ from apothem.cli._common_flags import (
14
+ common_options,
15
+ get_console,
16
+ get_error_console,
17
+ resolve_format,
18
+ )
19
+ from apothem.cli._epilogs import _EP_MIGRATE_WORKSPACE
20
+ from apothem.cli._helpers import (
21
+ _EXIT_EXPECTED,
22
+ _CliUserError,
23
+ _emit_expected_error,
24
+ _project_option,
25
+ _resolve_project_root,
26
+ )
27
+ from apothem.cli._json_formatter import emit_json
28
+ from apothem.lib.workspace_migration import (
29
+ WorkspaceMigrationError,
30
+ detect_legacy_layout,
31
+ migrate_workspace,
32
+ )
33
+
34
+
35
+ @main.command(name="migrate-workspace", epilog=_EP_MIGRATE_WORKSPACE)
36
+ @_project_option
37
+ @click.option(
38
+ "--dry-run",
39
+ is_flag=True,
40
+ default=False,
41
+ help="Detect the legacy layout and report what would migrate without writing.",
42
+ )
43
+ @common_options
44
+ def migrate_workspace_command(
45
+ project: str | None,
46
+ dry_run: bool,
47
+ quiet: bool,
48
+ verbose: bool,
49
+ output_format: str,
50
+ no_color: bool,
51
+ json_flag: bool,
52
+ ) -> None:
53
+ """Migrate a legacy per-harness workspace into the shared ``.apothem`` layout.
54
+
55
+ The base is the resolved ``--project`` root when supplied, otherwise the
56
+ current working directory (the project-local default). Per-harness
57
+ memory/contexts/learning stores union-merge into the shared store; a
58
+ conflicting record is skipped, never overwritten; a legacy ``.plans`` tree
59
+ moves under ``.apothem/plans``; every consumed source is backed up first.
60
+ The migration is idempotent.
61
+ """
62
+ fmt = resolve_format(output_format, json_flag)
63
+ con = get_console(no_color=no_color, quiet=quiet)
64
+ try:
65
+ project_root = _resolve_project_root(project)
66
+ except _CliUserError as exc:
67
+ _emit_expected_error(
68
+ command="migrate-workspace",
69
+ fmt=fmt,
70
+ harness=None,
71
+ profile_path=None,
72
+ error=exc.to_dict(),
73
+ )
74
+ return
75
+
76
+ base = project_root if project_root is not None else Path.cwd()
77
+
78
+ if dry_run:
79
+ detected = detect_legacy_layout(base)
80
+ if fmt == "json":
81
+ emit_json(
82
+ {
83
+ "command": "migrate-workspace",
84
+ "base": str(base),
85
+ "dry_run": True,
86
+ "legacy_layout_detected": detected,
87
+ }
88
+ )
89
+ return
90
+ if detected:
91
+ con.print(
92
+ f"[yellow]Legacy layout detected under {base}.[/] "
93
+ "Run 'apothem migrate-workspace' to migrate it."
94
+ )
95
+ else:
96
+ con.print(f"[green]No legacy layout under {base}; nothing to migrate.[/]")
97
+ return
98
+
99
+ try:
100
+ outcome = migrate_workspace(base)
101
+ except WorkspaceMigrationError as exc:
102
+ if fmt == "json":
103
+ emit_json(
104
+ {
105
+ "command": "migrate-workspace",
106
+ "status": "error",
107
+ "base": str(base),
108
+ "error": str(exc),
109
+ }
110
+ )
111
+ else:
112
+ get_error_console(no_color=no_color).print(f"[red]✗[/] {exc}")
113
+ sys.exit(_EXIT_EXPECTED)
114
+
115
+ if fmt == "json":
116
+ payload = outcome.to_dict()
117
+ payload["command"] = "migrate-workspace"
118
+ payload["status"] = "success"
119
+ emit_json(payload)
120
+ return
121
+
122
+ if not outcome.migrated:
123
+ con.print(f"[green]No legacy layout under {base}; nothing to migrate.[/]")
124
+ return
125
+
126
+ con.print(f"[green]✓[/] Migrated the workspace under {base}.")
127
+ con.print(
128
+ f" Merged: {outcome.memory_merged} memory, "
129
+ f"{outcome.contexts_merged} contexts, "
130
+ f"{outcome.learning_merged} learning records."
131
+ )
132
+ if outcome.plans_moved:
133
+ con.print(" Moved: .plans/ -> .apothem/plans/")
134
+ if outcome.backup_root is not None:
135
+ con.print(f" Backup: {outcome.backup_root}")
136
+ if outcome.conflicts:
137
+ con.print(
138
+ f" [yellow]Skipped {len(outcome.conflicts)} conflicting record(s) "
139
+ "(same id, different body): "
140
+ f"{', '.join(outcome.conflicts)}[/]"
141
+ )
142
+ for note in outcome.notes:
143
+ con.print(f" [yellow]Note:[/] {note}")