ruby-eigen 0.0.9 → 0.0.10.pre1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (293) hide show
  1. checksums.yaml +4 -4
  2. data/LICENSE +22 -0
  3. data/README.md +21 -0
  4. data/ext/eigen/eigen3/COPYING.BSD +26 -0
  5. data/ext/eigen/eigen3/COPYING.MPL2 +373 -0
  6. data/ext/eigen/eigen3/COPYING.README +18 -0
  7. data/ext/eigen/eigen3/Eigen/Array +11 -0
  8. data/ext/eigen/eigen3/Eigen/Cholesky +32 -0
  9. data/ext/eigen/eigen3/Eigen/CholmodSupport +45 -0
  10. data/ext/eigen/eigen3/Eigen/Core +376 -0
  11. data/ext/eigen/eigen3/Eigen/Dense +7 -0
  12. data/ext/eigen/eigen3/Eigen/Eigen +2 -0
  13. data/ext/eigen/eigen3/Eigen/Eigen2Support +95 -0
  14. data/ext/eigen/eigen3/Eigen/Eigenvalues +48 -0
  15. data/ext/eigen/eigen3/Eigen/Geometry +63 -0
  16. data/ext/eigen/eigen3/Eigen/Householder +23 -0
  17. data/ext/eigen/eigen3/Eigen/IterativeLinearSolvers +40 -0
  18. data/ext/eigen/eigen3/Eigen/Jacobi +26 -0
  19. data/ext/eigen/eigen3/Eigen/LU +41 -0
  20. data/ext/eigen/eigen3/Eigen/LeastSquares +32 -0
  21. data/ext/eigen/eigen3/Eigen/MetisSupport +28 -0
  22. data/ext/eigen/eigen3/Eigen/PaStiXSupport +46 -0
  23. data/ext/eigen/eigen3/Eigen/PardisoSupport +30 -0
  24. data/ext/eigen/eigen3/Eigen/QR +45 -0
  25. data/ext/eigen/eigen3/Eigen/QtAlignedMalloc +34 -0
  26. data/ext/eigen/eigen3/Eigen/SPQRSupport +29 -0
  27. data/ext/eigen/eigen3/Eigen/SVD +37 -0
  28. data/ext/eigen/eigen3/Eigen/Sparse +27 -0
  29. data/ext/eigen/eigen3/Eigen/SparseCore +64 -0
  30. data/ext/eigen/eigen3/Eigen/SparseLU +49 -0
  31. data/ext/eigen/eigen3/Eigen/SparseQR +33 -0
  32. data/ext/eigen/eigen3/Eigen/StdDeque +27 -0
  33. data/ext/eigen/eigen3/Eigen/StdList +26 -0
  34. data/ext/eigen/eigen3/Eigen/StdVector +27 -0
  35. data/ext/eigen/eigen3/Eigen/SuperLUSupport +59 -0
  36. data/ext/eigen/eigen3/Eigen/UmfPackSupport +36 -0
  37. data/ext/eigen/eigen3/Eigen/src/Cholesky/LDLT.h +611 -0
  38. data/ext/eigen/eigen3/Eigen/src/Cholesky/LLT.h +498 -0
  39. data/ext/eigen/eigen3/Eigen/src/Cholesky/LLT_MKL.h +102 -0
  40. data/ext/eigen/eigen3/Eigen/src/CholmodSupport/CholmodSupport.h +607 -0
  41. data/ext/eigen/eigen3/Eigen/src/Core/Array.h +323 -0
  42. data/ext/eigen/eigen3/Eigen/src/Core/ArrayBase.h +226 -0
  43. data/ext/eigen/eigen3/Eigen/src/Core/ArrayWrapper.h +264 -0
  44. data/ext/eigen/eigen3/Eigen/src/Core/Assign.h +590 -0
  45. data/ext/eigen/eigen3/Eigen/src/Core/Assign_MKL.h +224 -0
  46. data/ext/eigen/eigen3/Eigen/src/Core/BandMatrix.h +334 -0
  47. data/ext/eigen/eigen3/Eigen/src/Core/Block.h +406 -0
  48. data/ext/eigen/eigen3/Eigen/src/Core/BooleanRedux.h +154 -0
  49. data/ext/eigen/eigen3/Eigen/src/Core/CommaInitializer.h +154 -0
  50. data/ext/eigen/eigen3/Eigen/src/Core/CoreIterators.h +61 -0
  51. data/ext/eigen/eigen3/Eigen/src/Core/CwiseBinaryOp.h +230 -0
  52. data/ext/eigen/eigen3/Eigen/src/Core/CwiseNullaryOp.h +864 -0
  53. data/ext/eigen/eigen3/Eigen/src/Core/CwiseUnaryOp.h +126 -0
  54. data/ext/eigen/eigen3/Eigen/src/Core/CwiseUnaryView.h +139 -0
  55. data/ext/eigen/eigen3/Eigen/src/Core/DenseBase.h +521 -0
  56. data/ext/eigen/eigen3/Eigen/src/Core/DenseCoeffsBase.h +754 -0
  57. data/ext/eigen/eigen3/Eigen/src/Core/DenseStorage.h +434 -0
  58. data/ext/eigen/eigen3/Eigen/src/Core/Diagonal.h +237 -0
  59. data/ext/eigen/eigen3/Eigen/src/Core/DiagonalMatrix.h +313 -0
  60. data/ext/eigen/eigen3/Eigen/src/Core/DiagonalProduct.h +131 -0
  61. data/ext/eigen/eigen3/Eigen/src/Core/Dot.h +263 -0
  62. data/ext/eigen/eigen3/Eigen/src/Core/EigenBase.h +131 -0
  63. data/ext/eigen/eigen3/Eigen/src/Core/Flagged.h +140 -0
  64. data/ext/eigen/eigen3/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  65. data/ext/eigen/eigen3/Eigen/src/Core/Functors.h +1026 -0
  66. data/ext/eigen/eigen3/Eigen/src/Core/Fuzzy.h +150 -0
  67. data/ext/eigen/eigen3/Eigen/src/Core/GeneralProduct.h +635 -0
  68. data/ext/eigen/eigen3/Eigen/src/Core/GenericPacketMath.h +350 -0
  69. data/ext/eigen/eigen3/Eigen/src/Core/GlobalFunctions.h +92 -0
  70. data/ext/eigen/eigen3/Eigen/src/Core/IO.h +250 -0
  71. data/ext/eigen/eigen3/Eigen/src/Core/Map.h +192 -0
  72. data/ext/eigen/eigen3/Eigen/src/Core/MapBase.h +247 -0
  73. data/ext/eigen/eigen3/Eigen/src/Core/MathFunctions.h +768 -0
  74. data/ext/eigen/eigen3/Eigen/src/Core/Matrix.h +420 -0
  75. data/ext/eigen/eigen3/Eigen/src/Core/MatrixBase.h +563 -0
  76. data/ext/eigen/eigen3/Eigen/src/Core/NestByValue.h +111 -0
  77. data/ext/eigen/eigen3/Eigen/src/Core/NoAlias.h +134 -0
  78. data/ext/eigen/eigen3/Eigen/src/Core/NumTraits.h +150 -0
  79. data/ext/eigen/eigen3/Eigen/src/Core/PermutationMatrix.h +721 -0
  80. data/ext/eigen/eigen3/Eigen/src/Core/PlainObjectBase.h +822 -0
  81. data/ext/eigen/eigen3/Eigen/src/Core/ProductBase.h +290 -0
  82. data/ext/eigen/eigen3/Eigen/src/Core/Random.h +152 -0
  83. data/ext/eigen/eigen3/Eigen/src/Core/Redux.h +409 -0
  84. data/ext/eigen/eigen3/Eigen/src/Core/Ref.h +278 -0
  85. data/ext/eigen/eigen3/Eigen/src/Core/Replicate.h +177 -0
  86. data/ext/eigen/eigen3/Eigen/src/Core/ReturnByValue.h +99 -0
  87. data/ext/eigen/eigen3/Eigen/src/Core/Reverse.h +224 -0
  88. data/ext/eigen/eigen3/Eigen/src/Core/Select.h +162 -0
  89. data/ext/eigen/eigen3/Eigen/src/Core/SelfAdjointView.h +314 -0
  90. data/ext/eigen/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h +191 -0
  91. data/ext/eigen/eigen3/Eigen/src/Core/SolveTriangular.h +260 -0
  92. data/ext/eigen/eigen3/Eigen/src/Core/StableNorm.h +203 -0
  93. data/ext/eigen/eigen3/Eigen/src/Core/Stride.h +108 -0
  94. data/ext/eigen/eigen3/Eigen/src/Core/Swap.h +126 -0
  95. data/ext/eigen/eigen3/Eigen/src/Core/Transpose.h +419 -0
  96. data/ext/eigen/eigen3/Eigen/src/Core/Transpositions.h +436 -0
  97. data/ext/eigen/eigen3/Eigen/src/Core/TriangularMatrix.h +839 -0
  98. data/ext/eigen/eigen3/Eigen/src/Core/VectorBlock.h +95 -0
  99. data/ext/eigen/eigen3/Eigen/src/Core/VectorwiseOp.h +642 -0
  100. data/ext/eigen/eigen3/Eigen/src/Core/Visitor.h +237 -0
  101. data/ext/eigen/eigen3/Eigen/src/Core/arch/AltiVec/Complex.h +217 -0
  102. data/ext/eigen/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h +501 -0
  103. data/ext/eigen/eigen3/Eigen/src/Core/arch/Default/Settings.h +49 -0
  104. data/ext/eigen/eigen3/Eigen/src/Core/arch/NEON/Complex.h +253 -0
  105. data/ext/eigen/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h +420 -0
  106. data/ext/eigen/eigen3/Eigen/src/Core/arch/SSE/Complex.h +442 -0
  107. data/ext/eigen/eigen3/Eigen/src/Core/arch/SSE/MathFunctions.h +475 -0
  108. data/ext/eigen/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h +649 -0
  109. data/ext/eigen/eigen3/Eigen/src/Core/products/CoeffBasedProduct.h +476 -0
  110. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1341 -0
  111. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h +427 -0
  112. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +278 -0
  113. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h +146 -0
  114. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h +118 -0
  115. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixVector.h +566 -0
  116. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixVector_MKL.h +131 -0
  117. data/ext/eigen/eigen3/Eigen/src/Core/products/Parallelizer.h +162 -0
  118. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +436 -0
  119. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h +295 -0
  120. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector.h +281 -0
  121. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h +114 -0
  122. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointProduct.h +123 -0
  123. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  124. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix.h +427 -0
  125. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h +309 -0
  126. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h +348 -0
  127. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixVector_MKL.h +247 -0
  128. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularSolverMatrix.h +332 -0
  129. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h +155 -0
  130. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularSolverVector.h +139 -0
  131. data/ext/eigen/eigen3/Eigen/src/Core/util/BlasUtil.h +264 -0
  132. data/ext/eigen/eigen3/Eigen/src/Core/util/Constants.h +451 -0
  133. data/ext/eigen/eigen3/Eigen/src/Core/util/DisableStupidWarnings.h +40 -0
  134. data/ext/eigen/eigen3/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  135. data/ext/eigen/eigen3/Eigen/src/Core/util/MKL_support.h +158 -0
  136. data/ext/eigen/eigen3/Eigen/src/Core/util/Macros.h +451 -0
  137. data/ext/eigen/eigen3/Eigen/src/Core/util/Memory.h +977 -0
  138. data/ext/eigen/eigen3/Eigen/src/Core/util/Meta.h +243 -0
  139. data/ext/eigen/eigen3/Eigen/src/Core/util/NonMPL2.h +3 -0
  140. data/ext/eigen/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h +14 -0
  141. data/ext/eigen/eigen3/Eigen/src/Core/util/StaticAssert.h +208 -0
  142. data/ext/eigen/eigen3/Eigen/src/Core/util/XprHelper.h +469 -0
  143. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Block.h +126 -0
  144. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Cwise.h +192 -0
  145. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/CwiseOperators.h +298 -0
  146. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/AlignedBox.h +159 -0
  147. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/All.h +115 -0
  148. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/AngleAxis.h +214 -0
  149. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Hyperplane.h +254 -0
  150. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h +141 -0
  151. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Quaternion.h +495 -0
  152. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Rotation2D.h +145 -0
  153. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/RotationBase.h +123 -0
  154. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Scaling.h +167 -0
  155. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Transform.h +786 -0
  156. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Translation.h +184 -0
  157. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/LU.h +120 -0
  158. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Lazy.h +71 -0
  159. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/LeastSquares.h +169 -0
  160. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Macros.h +20 -0
  161. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/MathFunctions.h +57 -0
  162. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Memory.h +45 -0
  163. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Meta.h +75 -0
  164. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Minor.h +117 -0
  165. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/QR.h +67 -0
  166. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/SVD.h +637 -0
  167. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/TriangularSolver.h +42 -0
  168. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/VectorBlock.h +94 -0
  169. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/ComplexEigenSolver.h +341 -0
  170. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/ComplexSchur.h +456 -0
  171. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/ComplexSchur_MKL.h +94 -0
  172. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/EigenSolver.h +607 -0
  173. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +350 -0
  174. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +227 -0
  175. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/HessenbergDecomposition.h +373 -0
  176. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +160 -0
  177. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/RealQZ.h +624 -0
  178. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/RealSchur.h +525 -0
  179. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/RealSchur_MKL.h +83 -0
  180. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +801 -0
  181. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h +92 -0
  182. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/Tridiagonalization.h +557 -0
  183. data/ext/eigen/eigen3/Eigen/src/Geometry/AlignedBox.h +392 -0
  184. data/ext/eigen/eigen3/Eigen/src/Geometry/AngleAxis.h +233 -0
  185. data/ext/eigen/eigen3/Eigen/src/Geometry/EulerAngles.h +104 -0
  186. data/ext/eigen/eigen3/Eigen/src/Geometry/Homogeneous.h +307 -0
  187. data/ext/eigen/eigen3/Eigen/src/Geometry/Hyperplane.h +280 -0
  188. data/ext/eigen/eigen3/Eigen/src/Geometry/OrthoMethods.h +218 -0
  189. data/ext/eigen/eigen3/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  190. data/ext/eigen/eigen3/Eigen/src/Geometry/Quaternion.h +776 -0
  191. data/ext/eigen/eigen3/Eigen/src/Geometry/Rotation2D.h +160 -0
  192. data/ext/eigen/eigen3/Eigen/src/Geometry/RotationBase.h +206 -0
  193. data/ext/eigen/eigen3/Eigen/src/Geometry/Scaling.h +166 -0
  194. data/ext/eigen/eigen3/Eigen/src/Geometry/Transform.h +1455 -0
  195. data/ext/eigen/eigen3/Eigen/src/Geometry/Translation.h +206 -0
  196. data/ext/eigen/eigen3/Eigen/src/Geometry/Umeyama.h +177 -0
  197. data/ext/eigen/eigen3/Eigen/src/Geometry/arch/Geometry_SSE.h +115 -0
  198. data/ext/eigen/eigen3/Eigen/src/Householder/BlockHouseholder.h +68 -0
  199. data/ext/eigen/eigen3/Eigen/src/Householder/Householder.h +171 -0
  200. data/ext/eigen/eigen3/Eigen/src/Householder/HouseholderSequence.h +441 -0
  201. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +149 -0
  202. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +263 -0
  203. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +256 -0
  204. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +282 -0
  205. data/ext/eigen/eigen3/Eigen/src/Jacobi/Jacobi.h +433 -0
  206. data/ext/eigen/eigen3/Eigen/src/LU/Determinant.h +101 -0
  207. data/ext/eigen/eigen3/Eigen/src/LU/FullPivLU.h +751 -0
  208. data/ext/eigen/eigen3/Eigen/src/LU/Inverse.h +400 -0
  209. data/ext/eigen/eigen3/Eigen/src/LU/PartialPivLU.h +509 -0
  210. data/ext/eigen/eigen3/Eigen/src/LU/PartialPivLU_MKL.h +85 -0
  211. data/ext/eigen/eigen3/Eigen/src/LU/arch/Inverse_SSE.h +329 -0
  212. data/ext/eigen/eigen3/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  213. data/ext/eigen/eigen3/Eigen/src/OrderingMethods/Amd.h +444 -0
  214. data/ext/eigen/eigen3/Eigen/src/OrderingMethods/Eigen_Colamd.h +1850 -0
  215. data/ext/eigen/eigen3/Eigen/src/PaStiXSupport/PaStiXSupport.h +721 -0
  216. data/ext/eigen/eigen3/Eigen/src/PardisoSupport/PardisoSupport.h +592 -0
  217. data/ext/eigen/eigen3/Eigen/src/QR/ColPivHouseholderQR.h +580 -0
  218. data/ext/eigen/eigen3/Eigen/src/QR/ColPivHouseholderQR_MKL.h +99 -0
  219. data/ext/eigen/eigen3/Eigen/src/QR/FullPivHouseholderQR.h +622 -0
  220. data/ext/eigen/eigen3/Eigen/src/QR/HouseholderQR.h +388 -0
  221. data/ext/eigen/eigen3/Eigen/src/QR/HouseholderQR_MKL.h +71 -0
  222. data/ext/eigen/eigen3/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +338 -0
  223. data/ext/eigen/eigen3/Eigen/src/SVD/JacobiSVD.h +976 -0
  224. data/ext/eigen/eigen3/Eigen/src/SVD/JacobiSVD_MKL.h +92 -0
  225. data/ext/eigen/eigen3/Eigen/src/SVD/UpperBidiagonalization.h +148 -0
  226. data/ext/eigen/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky.h +671 -0
  227. data/ext/eigen/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  228. data/ext/eigen/eigen3/Eigen/src/SparseCore/AmbiVector.h +373 -0
  229. data/ext/eigen/eigen3/Eigen/src/SparseCore/CompressedStorage.h +233 -0
  230. data/ext/eigen/eigen3/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +245 -0
  231. data/ext/eigen/eigen3/Eigen/src/SparseCore/MappedSparseMatrix.h +181 -0
  232. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseBlock.h +537 -0
  233. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  234. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +325 -0
  235. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +163 -0
  236. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseDenseProduct.h +311 -0
  237. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseDiagonalProduct.h +196 -0
  238. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseDot.h +101 -0
  239. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseFuzzy.h +26 -0
  240. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseMatrix.h +1262 -0
  241. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseMatrixBase.h +461 -0
  242. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparsePermutation.h +148 -0
  243. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseProduct.h +188 -0
  244. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseRedux.h +45 -0
  245. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseSelfAdjointView.h +507 -0
  246. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +150 -0
  247. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseTranspose.h +63 -0
  248. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseTriangularView.h +179 -0
  249. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseUtil.h +172 -0
  250. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseVector.h +448 -0
  251. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseView.h +99 -0
  252. data/ext/eigen/eigen3/Eigen/src/SparseCore/TriangularSolver.h +334 -0
  253. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU.h +806 -0
  254. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  255. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_Memory.h +227 -0
  256. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_Structs.h +111 -0
  257. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +298 -0
  258. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  259. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_column_bmod.h +180 -0
  260. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_column_dfs.h +177 -0
  261. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +106 -0
  262. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +279 -0
  263. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +127 -0
  264. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  265. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  266. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  267. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  268. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_pruneL.h +135 -0
  269. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  270. data/ext/eigen/eigen3/Eigen/src/SparseQR/SparseQR.h +714 -0
  271. data/ext/eigen/eigen3/Eigen/src/StlSupport/StdDeque.h +134 -0
  272. data/ext/eigen/eigen3/Eigen/src/StlSupport/StdList.h +114 -0
  273. data/ext/eigen/eigen3/Eigen/src/StlSupport/StdVector.h +126 -0
  274. data/ext/eigen/eigen3/Eigen/src/StlSupport/details.h +84 -0
  275. data/ext/eigen/eigen3/Eigen/src/SuperLUSupport/SuperLUSupport.h +1026 -0
  276. data/ext/eigen/eigen3/Eigen/src/UmfPackSupport/UmfPackSupport.h +474 -0
  277. data/ext/eigen/eigen3/Eigen/src/misc/Image.h +84 -0
  278. data/ext/eigen/eigen3/Eigen/src/misc/Kernel.h +81 -0
  279. data/ext/eigen/eigen3/Eigen/src/misc/Solve.h +76 -0
  280. data/ext/eigen/eigen3/Eigen/src/misc/SparseSolve.h +128 -0
  281. data/ext/eigen/eigen3/Eigen/src/misc/blas.h +658 -0
  282. data/ext/eigen/eigen3/Eigen/src/plugins/ArrayCwiseBinaryOps.h +253 -0
  283. data/ext/eigen/eigen3/Eigen/src/plugins/ArrayCwiseUnaryOps.h +187 -0
  284. data/ext/eigen/eigen3/Eigen/src/plugins/BlockMethods.h +935 -0
  285. data/ext/eigen/eigen3/Eigen/src/plugins/CommonCwiseBinaryOps.h +46 -0
  286. data/ext/eigen/eigen3/Eigen/src/plugins/CommonCwiseUnaryOps.h +172 -0
  287. data/ext/eigen/eigen3/Eigen/src/plugins/MatrixCwiseBinaryOps.h +143 -0
  288. data/ext/eigen/eigen3/Eigen/src/plugins/MatrixCwiseUnaryOps.h +52 -0
  289. data/ext/eigen/eigen3/signature_of_eigen3_matrix_library +1 -0
  290. data/ext/eigen/eigen_wrap.cxx +19420 -10396
  291. data/ext/eigen/extconf.rb +37 -2
  292. data/lib/eigen.rb +146 -3
  293. metadata +294 -7
@@ -0,0 +1,102 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to Intel(R) MKL
29
+ * LLt decomposition based on LAPACKE_?potrf function.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_LLT_MKL_H
34
+ #define EIGEN_LLT_MKL_H
35
+
36
+ #include "Eigen/src/Core/util/MKL_support.h"
37
+ #include <iostream>
38
+
39
+ namespace Eigen {
40
+
41
+ namespace internal {
42
+
43
+ template<typename Scalar> struct mkl_llt;
44
+
45
+ #define EIGEN_MKL_LLT(EIGTYPE, MKLTYPE, MKLPREFIX) \
46
+ template<> struct mkl_llt<EIGTYPE> \
47
+ { \
48
+ template<typename MatrixType> \
49
+ static inline typename MatrixType::Index potrf(MatrixType& m, char uplo) \
50
+ { \
51
+ lapack_int matrix_order; \
52
+ lapack_int size, lda, info, StorageOrder; \
53
+ EIGTYPE* a; \
54
+ eigen_assert(m.rows()==m.cols()); \
55
+ /* Set up parameters for ?potrf */ \
56
+ size = m.rows(); \
57
+ StorageOrder = MatrixType::Flags&RowMajorBit?RowMajor:ColMajor; \
58
+ matrix_order = StorageOrder==RowMajor ? LAPACK_ROW_MAJOR : LAPACK_COL_MAJOR; \
59
+ a = &(m.coeffRef(0,0)); \
60
+ lda = m.outerStride(); \
61
+ \
62
+ info = LAPACKE_##MKLPREFIX##potrf( matrix_order, uplo, size, (MKLTYPE*)a, lda ); \
63
+ info = (info==0) ? -1 : info>0 ? info-1 : size; \
64
+ return info; \
65
+ } \
66
+ }; \
67
+ template<> struct llt_inplace<EIGTYPE, Lower> \
68
+ { \
69
+ template<typename MatrixType> \
70
+ static typename MatrixType::Index blocked(MatrixType& m) \
71
+ { \
72
+ return mkl_llt<EIGTYPE>::potrf(m, 'L'); \
73
+ } \
74
+ template<typename MatrixType, typename VectorType> \
75
+ static typename MatrixType::Index rankUpdate(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) \
76
+ { return Eigen::internal::llt_rank_update_lower(mat, vec, sigma); } \
77
+ }; \
78
+ template<> struct llt_inplace<EIGTYPE, Upper> \
79
+ { \
80
+ template<typename MatrixType> \
81
+ static typename MatrixType::Index blocked(MatrixType& m) \
82
+ { \
83
+ return mkl_llt<EIGTYPE>::potrf(m, 'U'); \
84
+ } \
85
+ template<typename MatrixType, typename VectorType> \
86
+ static typename MatrixType::Index rankUpdate(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) \
87
+ { \
88
+ Transpose<MatrixType> matt(mat); \
89
+ return llt_inplace<EIGTYPE, Lower>::rankUpdate(matt, vec.conjugate(), sigma); \
90
+ } \
91
+ };
92
+
93
+ EIGEN_MKL_LLT(double, double, d)
94
+ EIGEN_MKL_LLT(float, float, s)
95
+ EIGEN_MKL_LLT(dcomplex, MKL_Complex16, z)
96
+ EIGEN_MKL_LLT(scomplex, MKL_Complex8, c)
97
+
98
+ } // end namespace internal
99
+
100
+ } // end namespace Eigen
101
+
102
+ #endif // EIGEN_LLT_MKL_H
@@ -0,0 +1,607 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_CHOLMODSUPPORT_H
11
+ #define EIGEN_CHOLMODSUPPORT_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename Scalar, typename CholmodType>
18
+ void cholmod_configure_matrix(CholmodType& mat)
19
+ {
20
+ if (internal::is_same<Scalar,float>::value)
21
+ {
22
+ mat.xtype = CHOLMOD_REAL;
23
+ mat.dtype = CHOLMOD_SINGLE;
24
+ }
25
+ else if (internal::is_same<Scalar,double>::value)
26
+ {
27
+ mat.xtype = CHOLMOD_REAL;
28
+ mat.dtype = CHOLMOD_DOUBLE;
29
+ }
30
+ else if (internal::is_same<Scalar,std::complex<float> >::value)
31
+ {
32
+ mat.xtype = CHOLMOD_COMPLEX;
33
+ mat.dtype = CHOLMOD_SINGLE;
34
+ }
35
+ else if (internal::is_same<Scalar,std::complex<double> >::value)
36
+ {
37
+ mat.xtype = CHOLMOD_COMPLEX;
38
+ mat.dtype = CHOLMOD_DOUBLE;
39
+ }
40
+ else
41
+ {
42
+ eigen_assert(false && "Scalar type not supported by CHOLMOD");
43
+ }
44
+ }
45
+
46
+ } // namespace internal
47
+
48
+ /** Wraps the Eigen sparse matrix \a mat into a Cholmod sparse matrix object.
49
+ * Note that the data are shared.
50
+ */
51
+ template<typename _Scalar, int _Options, typename _Index>
52
+ cholmod_sparse viewAsCholmod(SparseMatrix<_Scalar,_Options,_Index>& mat)
53
+ {
54
+ cholmod_sparse res;
55
+ res.nzmax = mat.nonZeros();
56
+ res.nrow = mat.rows();;
57
+ res.ncol = mat.cols();
58
+ res.p = mat.outerIndexPtr();
59
+ res.i = mat.innerIndexPtr();
60
+ res.x = mat.valuePtr();
61
+ res.z = 0;
62
+ res.sorted = 1;
63
+ if(mat.isCompressed())
64
+ {
65
+ res.packed = 1;
66
+ res.nz = 0;
67
+ }
68
+ else
69
+ {
70
+ res.packed = 0;
71
+ res.nz = mat.innerNonZeroPtr();
72
+ }
73
+
74
+ res.dtype = 0;
75
+ res.stype = -1;
76
+
77
+ if (internal::is_same<_Index,int>::value)
78
+ {
79
+ res.itype = CHOLMOD_INT;
80
+ }
81
+ else if (internal::is_same<_Index,SuiteSparse_long>::value)
82
+ {
83
+ res.itype = CHOLMOD_LONG;
84
+ }
85
+ else
86
+ {
87
+ eigen_assert(false && "Index type not supported yet");
88
+ }
89
+
90
+ // setup res.xtype
91
+ internal::cholmod_configure_matrix<_Scalar>(res);
92
+
93
+ res.stype = 0;
94
+
95
+ return res;
96
+ }
97
+
98
+ template<typename _Scalar, int _Options, typename _Index>
99
+ const cholmod_sparse viewAsCholmod(const SparseMatrix<_Scalar,_Options,_Index>& mat)
100
+ {
101
+ cholmod_sparse res = viewAsCholmod(mat.const_cast_derived());
102
+ return res;
103
+ }
104
+
105
+ /** Returns a view of the Eigen sparse matrix \a mat as Cholmod sparse matrix.
106
+ * The data are not copied but shared. */
107
+ template<typename _Scalar, int _Options, typename _Index, unsigned int UpLo>
108
+ cholmod_sparse viewAsCholmod(const SparseSelfAdjointView<SparseMatrix<_Scalar,_Options,_Index>, UpLo>& mat)
109
+ {
110
+ cholmod_sparse res = viewAsCholmod(mat.matrix().const_cast_derived());
111
+
112
+ if(UpLo==Upper) res.stype = 1;
113
+ if(UpLo==Lower) res.stype = -1;
114
+
115
+ return res;
116
+ }
117
+
118
+ /** Returns a view of the Eigen \b dense matrix \a mat as Cholmod dense matrix.
119
+ * The data are not copied but shared. */
120
+ template<typename Derived>
121
+ cholmod_dense viewAsCholmod(MatrixBase<Derived>& mat)
122
+ {
123
+ EIGEN_STATIC_ASSERT((internal::traits<Derived>::Flags&RowMajorBit)==0,THIS_METHOD_IS_ONLY_FOR_COLUMN_MAJOR_MATRICES);
124
+ typedef typename Derived::Scalar Scalar;
125
+
126
+ cholmod_dense res;
127
+ res.nrow = mat.rows();
128
+ res.ncol = mat.cols();
129
+ res.nzmax = res.nrow * res.ncol;
130
+ res.d = Derived::IsVectorAtCompileTime ? mat.derived().size() : mat.derived().outerStride();
131
+ res.x = (void*)(mat.derived().data());
132
+ res.z = 0;
133
+
134
+ internal::cholmod_configure_matrix<Scalar>(res);
135
+
136
+ return res;
137
+ }
138
+
139
+ /** Returns a view of the Cholmod sparse matrix \a cm as an Eigen sparse matrix.
140
+ * The data are not copied but shared. */
141
+ template<typename Scalar, int Flags, typename Index>
142
+ MappedSparseMatrix<Scalar,Flags,Index> viewAsEigen(cholmod_sparse& cm)
143
+ {
144
+ return MappedSparseMatrix<Scalar,Flags,Index>
145
+ (cm.nrow, cm.ncol, static_cast<Index*>(cm.p)[cm.ncol],
146
+ static_cast<Index*>(cm.p), static_cast<Index*>(cm.i),static_cast<Scalar*>(cm.x) );
147
+ }
148
+
149
+ enum CholmodMode {
150
+ CholmodAuto, CholmodSimplicialLLt, CholmodSupernodalLLt, CholmodLDLt
151
+ };
152
+
153
+
154
+ /** \ingroup CholmodSupport_Module
155
+ * \class CholmodBase
156
+ * \brief The base class for the direct Cholesky factorization of Cholmod
157
+ * \sa class CholmodSupernodalLLT, class CholmodSimplicialLDLT, class CholmodSimplicialLLT
158
+ */
159
+ template<typename _MatrixType, int _UpLo, typename Derived>
160
+ class CholmodBase : internal::noncopyable
161
+ {
162
+ public:
163
+ typedef _MatrixType MatrixType;
164
+ enum { UpLo = _UpLo };
165
+ typedef typename MatrixType::Scalar Scalar;
166
+ typedef typename MatrixType::RealScalar RealScalar;
167
+ typedef MatrixType CholMatrixType;
168
+ typedef typename MatrixType::Index Index;
169
+
170
+ public:
171
+
172
+ CholmodBase()
173
+ : m_cholmodFactor(0), m_info(Success), m_isInitialized(false)
174
+ {
175
+ m_shiftOffset[0] = m_shiftOffset[1] = RealScalar(0.0);
176
+ cholmod_start(&m_cholmod);
177
+ }
178
+
179
+ CholmodBase(const MatrixType& matrix)
180
+ : m_cholmodFactor(0), m_info(Success), m_isInitialized(false)
181
+ {
182
+ m_shiftOffset[0] = m_shiftOffset[1] = RealScalar(0.0);
183
+ cholmod_start(&m_cholmod);
184
+ compute(matrix);
185
+ }
186
+
187
+ ~CholmodBase()
188
+ {
189
+ if(m_cholmodFactor)
190
+ cholmod_free_factor(&m_cholmodFactor, &m_cholmod);
191
+ cholmod_finish(&m_cholmod);
192
+ }
193
+
194
+ inline Index cols() const { return m_cholmodFactor->n; }
195
+ inline Index rows() const { return m_cholmodFactor->n; }
196
+
197
+ Derived& derived() { return *static_cast<Derived*>(this); }
198
+ const Derived& derived() const { return *static_cast<const Derived*>(this); }
199
+
200
+ /** \brief Reports whether previous computation was successful.
201
+ *
202
+ * \returns \c Success if computation was succesful,
203
+ * \c NumericalIssue if the matrix.appears to be negative.
204
+ */
205
+ ComputationInfo info() const
206
+ {
207
+ eigen_assert(m_isInitialized && "Decomposition is not initialized.");
208
+ return m_info;
209
+ }
210
+
211
+ /** Computes the sparse Cholesky decomposition of \a matrix */
212
+ Derived& compute(const MatrixType& matrix)
213
+ {
214
+ analyzePattern(matrix);
215
+ factorize(matrix);
216
+ return derived();
217
+ }
218
+
219
+ /** \returns the solution x of \f$ A x = b \f$ using the current decomposition of A.
220
+ *
221
+ * \sa compute()
222
+ */
223
+ template<typename Rhs>
224
+ inline const internal::solve_retval<CholmodBase, Rhs>
225
+ solve(const MatrixBase<Rhs>& b) const
226
+ {
227
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
228
+ eigen_assert(rows()==b.rows()
229
+ && "CholmodDecomposition::solve(): invalid number of rows of the right hand side matrix b");
230
+ return internal::solve_retval<CholmodBase, Rhs>(*this, b.derived());
231
+ }
232
+
233
+ /** \returns the solution x of \f$ A x = b \f$ using the current decomposition of A.
234
+ *
235
+ * \sa compute()
236
+ */
237
+ template<typename Rhs>
238
+ inline const internal::sparse_solve_retval<CholmodBase, Rhs>
239
+ solve(const SparseMatrixBase<Rhs>& b) const
240
+ {
241
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
242
+ eigen_assert(rows()==b.rows()
243
+ && "CholmodDecomposition::solve(): invalid number of rows of the right hand side matrix b");
244
+ return internal::sparse_solve_retval<CholmodBase, Rhs>(*this, b.derived());
245
+ }
246
+
247
+ /** Performs a symbolic decomposition on the sparsity pattern of \a matrix.
248
+ *
249
+ * This function is particularly useful when solving for several problems having the same structure.
250
+ *
251
+ * \sa factorize()
252
+ */
253
+ void analyzePattern(const MatrixType& matrix)
254
+ {
255
+ if(m_cholmodFactor)
256
+ {
257
+ cholmod_free_factor(&m_cholmodFactor, &m_cholmod);
258
+ m_cholmodFactor = 0;
259
+ }
260
+ cholmod_sparse A = viewAsCholmod(matrix.template selfadjointView<UpLo>());
261
+ m_cholmodFactor = cholmod_analyze(&A, &m_cholmod);
262
+
263
+ this->m_isInitialized = true;
264
+ this->m_info = Success;
265
+ m_analysisIsOk = true;
266
+ m_factorizationIsOk = false;
267
+ }
268
+
269
+ /** Performs a numeric decomposition of \a matrix
270
+ *
271
+ * The given matrix must have the same sparsity pattern as the matrix on which the symbolic decomposition has been performed.
272
+ *
273
+ * \sa analyzePattern()
274
+ */
275
+ void factorize(const MatrixType& matrix)
276
+ {
277
+ eigen_assert(m_analysisIsOk && "You must first call analyzePattern()");
278
+ cholmod_sparse A = viewAsCholmod(matrix.template selfadjointView<UpLo>());
279
+ cholmod_factorize_p(&A, m_shiftOffset, 0, 0, m_cholmodFactor, &m_cholmod);
280
+
281
+ // If the factorization failed, minor is the column at which it did. On success minor == n.
282
+ this->m_info = (m_cholmodFactor->minor == m_cholmodFactor->n ? Success : NumericalIssue);
283
+ m_factorizationIsOk = true;
284
+ }
285
+
286
+ /** Returns a reference to the Cholmod's configuration structure to get a full control over the performed operations.
287
+ * See the Cholmod user guide for details. */
288
+ cholmod_common& cholmod() { return m_cholmod; }
289
+
290
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
291
+ /** \internal */
292
+ template<typename Rhs,typename Dest>
293
+ void _solve(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const
294
+ {
295
+ eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
296
+ const Index size = m_cholmodFactor->n;
297
+ EIGEN_UNUSED_VARIABLE(size);
298
+ eigen_assert(size==b.rows());
299
+
300
+ // note: cd stands for Cholmod Dense
301
+ Rhs& b_ref(b.const_cast_derived());
302
+ cholmod_dense b_cd = viewAsCholmod(b_ref);
303
+ cholmod_dense* x_cd = cholmod_solve(CHOLMOD_A, m_cholmodFactor, &b_cd, &m_cholmod);
304
+ if(!x_cd)
305
+ {
306
+ this->m_info = NumericalIssue;
307
+ }
308
+ // TODO optimize this copy by swapping when possible (be careful with alignment, etc.)
309
+ dest = Matrix<Scalar,Dest::RowsAtCompileTime,Dest::ColsAtCompileTime>::Map(reinterpret_cast<Scalar*>(x_cd->x),b.rows(),b.cols());
310
+ cholmod_free_dense(&x_cd, &m_cholmod);
311
+ }
312
+
313
+ /** \internal */
314
+ template<typename RhsScalar, int RhsOptions, typename RhsIndex, typename DestScalar, int DestOptions, typename DestIndex>
315
+ void _solve(const SparseMatrix<RhsScalar,RhsOptions,RhsIndex> &b, SparseMatrix<DestScalar,DestOptions,DestIndex> &dest) const
316
+ {
317
+ eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
318
+ const Index size = m_cholmodFactor->n;
319
+ EIGEN_UNUSED_VARIABLE(size);
320
+ eigen_assert(size==b.rows());
321
+
322
+ // note: cs stands for Cholmod Sparse
323
+ cholmod_sparse b_cs = viewAsCholmod(b);
324
+ cholmod_sparse* x_cs = cholmod_spsolve(CHOLMOD_A, m_cholmodFactor, &b_cs, &m_cholmod);
325
+ if(!x_cs)
326
+ {
327
+ this->m_info = NumericalIssue;
328
+ }
329
+ // TODO optimize this copy by swapping when possible (be careful with alignment, etc.)
330
+ dest = viewAsEigen<DestScalar,DestOptions,DestIndex>(*x_cs);
331
+ cholmod_free_sparse(&x_cs, &m_cholmod);
332
+ }
333
+ #endif // EIGEN_PARSED_BY_DOXYGEN
334
+
335
+
336
+ /** Sets the shift parameter that will be used to adjust the diagonal coefficients during the numerical factorization.
337
+ *
338
+ * During the numerical factorization, an offset term is added to the diagonal coefficients:\n
339
+ * \c d_ii = \a offset + \c d_ii
340
+ *
341
+ * The default is \a offset=0.
342
+ *
343
+ * \returns a reference to \c *this.
344
+ */
345
+ Derived& setShift(const RealScalar& offset)
346
+ {
347
+ m_shiftOffset[0] = offset;
348
+ return derived();
349
+ }
350
+
351
+ template<typename Stream>
352
+ void dumpMemory(Stream& /*s*/)
353
+ {}
354
+
355
+ protected:
356
+ mutable cholmod_common m_cholmod;
357
+ cholmod_factor* m_cholmodFactor;
358
+ RealScalar m_shiftOffset[2];
359
+ mutable ComputationInfo m_info;
360
+ bool m_isInitialized;
361
+ int m_factorizationIsOk;
362
+ int m_analysisIsOk;
363
+ };
364
+
365
+ /** \ingroup CholmodSupport_Module
366
+ * \class CholmodSimplicialLLT
367
+ * \brief A simplicial direct Cholesky (LLT) factorization and solver based on Cholmod
368
+ *
369
+ * This class allows to solve for A.X = B sparse linear problems via a simplicial LL^T Cholesky factorization
370
+ * using the Cholmod library.
371
+ * This simplicial variant is equivalent to Eigen's built-in SimplicialLLT class. Therefore, it has little practical interest.
372
+ * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
373
+ * X and B can be either dense or sparse.
374
+ *
375
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
376
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
377
+ * or Upper. Default is Lower.
378
+ *
379
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
380
+ *
381
+ * \sa \ref TutorialSparseDirectSolvers, class CholmodSupernodalLLT, class SimplicialLLT
382
+ */
383
+ template<typename _MatrixType, int _UpLo = Lower>
384
+ class CholmodSimplicialLLT : public CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLLT<_MatrixType, _UpLo> >
385
+ {
386
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLLT> Base;
387
+ using Base::m_cholmod;
388
+
389
+ public:
390
+
391
+ typedef _MatrixType MatrixType;
392
+
393
+ CholmodSimplicialLLT() : Base() { init(); }
394
+
395
+ CholmodSimplicialLLT(const MatrixType& matrix) : Base()
396
+ {
397
+ init();
398
+ Base::compute(matrix);
399
+ }
400
+
401
+ ~CholmodSimplicialLLT() {}
402
+ protected:
403
+ void init()
404
+ {
405
+ m_cholmod.final_asis = 0;
406
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
407
+ m_cholmod.final_ll = 1;
408
+ }
409
+ };
410
+
411
+
412
+ /** \ingroup CholmodSupport_Module
413
+ * \class CholmodSimplicialLDLT
414
+ * \brief A simplicial direct Cholesky (LDLT) factorization and solver based on Cholmod
415
+ *
416
+ * This class allows to solve for A.X = B sparse linear problems via a simplicial LDL^T Cholesky factorization
417
+ * using the Cholmod library.
418
+ * This simplicial variant is equivalent to Eigen's built-in SimplicialLDLT class. Therefore, it has little practical interest.
419
+ * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
420
+ * X and B can be either dense or sparse.
421
+ *
422
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
423
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
424
+ * or Upper. Default is Lower.
425
+ *
426
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
427
+ *
428
+ * \sa \ref TutorialSparseDirectSolvers, class CholmodSupernodalLLT, class SimplicialLDLT
429
+ */
430
+ template<typename _MatrixType, int _UpLo = Lower>
431
+ class CholmodSimplicialLDLT : public CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLDLT<_MatrixType, _UpLo> >
432
+ {
433
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLDLT> Base;
434
+ using Base::m_cholmod;
435
+
436
+ public:
437
+
438
+ typedef _MatrixType MatrixType;
439
+
440
+ CholmodSimplicialLDLT() : Base() { init(); }
441
+
442
+ CholmodSimplicialLDLT(const MatrixType& matrix) : Base()
443
+ {
444
+ init();
445
+ Base::compute(matrix);
446
+ }
447
+
448
+ ~CholmodSimplicialLDLT() {}
449
+ protected:
450
+ void init()
451
+ {
452
+ m_cholmod.final_asis = 1;
453
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
454
+ }
455
+ };
456
+
457
+ /** \ingroup CholmodSupport_Module
458
+ * \class CholmodSupernodalLLT
459
+ * \brief A supernodal Cholesky (LLT) factorization and solver based on Cholmod
460
+ *
461
+ * This class allows to solve for A.X = B sparse linear problems via a supernodal LL^T Cholesky factorization
462
+ * using the Cholmod library.
463
+ * This supernodal variant performs best on dense enough problems, e.g., 3D FEM, or very high order 2D FEM.
464
+ * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
465
+ * X and B can be either dense or sparse.
466
+ *
467
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
468
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
469
+ * or Upper. Default is Lower.
470
+ *
471
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
472
+ *
473
+ * \sa \ref TutorialSparseDirectSolvers
474
+ */
475
+ template<typename _MatrixType, int _UpLo = Lower>
476
+ class CholmodSupernodalLLT : public CholmodBase<_MatrixType, _UpLo, CholmodSupernodalLLT<_MatrixType, _UpLo> >
477
+ {
478
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodSupernodalLLT> Base;
479
+ using Base::m_cholmod;
480
+
481
+ public:
482
+
483
+ typedef _MatrixType MatrixType;
484
+
485
+ CholmodSupernodalLLT() : Base() { init(); }
486
+
487
+ CholmodSupernodalLLT(const MatrixType& matrix) : Base()
488
+ {
489
+ init();
490
+ Base::compute(matrix);
491
+ }
492
+
493
+ ~CholmodSupernodalLLT() {}
494
+ protected:
495
+ void init()
496
+ {
497
+ m_cholmod.final_asis = 1;
498
+ m_cholmod.supernodal = CHOLMOD_SUPERNODAL;
499
+ }
500
+ };
501
+
502
+ /** \ingroup CholmodSupport_Module
503
+ * \class CholmodDecomposition
504
+ * \brief A general Cholesky factorization and solver based on Cholmod
505
+ *
506
+ * This class allows to solve for A.X = B sparse linear problems via a LL^T or LDL^T Cholesky factorization
507
+ * using the Cholmod library. The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
508
+ * X and B can be either dense or sparse.
509
+ *
510
+ * This variant permits to change the underlying Cholesky method at runtime.
511
+ * On the other hand, it does not provide access to the result of the factorization.
512
+ * The default is to let Cholmod automatically choose between a simplicial and supernodal factorization.
513
+ *
514
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
515
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
516
+ * or Upper. Default is Lower.
517
+ *
518
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
519
+ *
520
+ * \sa \ref TutorialSparseDirectSolvers
521
+ */
522
+ template<typename _MatrixType, int _UpLo = Lower>
523
+ class CholmodDecomposition : public CholmodBase<_MatrixType, _UpLo, CholmodDecomposition<_MatrixType, _UpLo> >
524
+ {
525
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodDecomposition> Base;
526
+ using Base::m_cholmod;
527
+
528
+ public:
529
+
530
+ typedef _MatrixType MatrixType;
531
+
532
+ CholmodDecomposition() : Base() { init(); }
533
+
534
+ CholmodDecomposition(const MatrixType& matrix) : Base()
535
+ {
536
+ init();
537
+ Base::compute(matrix);
538
+ }
539
+
540
+ ~CholmodDecomposition() {}
541
+
542
+ void setMode(CholmodMode mode)
543
+ {
544
+ switch(mode)
545
+ {
546
+ case CholmodAuto:
547
+ m_cholmod.final_asis = 1;
548
+ m_cholmod.supernodal = CHOLMOD_AUTO;
549
+ break;
550
+ case CholmodSimplicialLLt:
551
+ m_cholmod.final_asis = 0;
552
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
553
+ m_cholmod.final_ll = 1;
554
+ break;
555
+ case CholmodSupernodalLLt:
556
+ m_cholmod.final_asis = 1;
557
+ m_cholmod.supernodal = CHOLMOD_SUPERNODAL;
558
+ break;
559
+ case CholmodLDLt:
560
+ m_cholmod.final_asis = 1;
561
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
562
+ break;
563
+ default:
564
+ break;
565
+ }
566
+ }
567
+ protected:
568
+ void init()
569
+ {
570
+ m_cholmod.final_asis = 1;
571
+ m_cholmod.supernodal = CHOLMOD_AUTO;
572
+ }
573
+ };
574
+
575
+ namespace internal {
576
+
577
+ template<typename _MatrixType, int _UpLo, typename Derived, typename Rhs>
578
+ struct solve_retval<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
579
+ : solve_retval_base<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
580
+ {
581
+ typedef CholmodBase<_MatrixType,_UpLo,Derived> Dec;
582
+ EIGEN_MAKE_SOLVE_HELPERS(Dec,Rhs)
583
+
584
+ template<typename Dest> void evalTo(Dest& dst) const
585
+ {
586
+ dec()._solve(rhs(),dst);
587
+ }
588
+ };
589
+
590
+ template<typename _MatrixType, int _UpLo, typename Derived, typename Rhs>
591
+ struct sparse_solve_retval<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
592
+ : sparse_solve_retval_base<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
593
+ {
594
+ typedef CholmodBase<_MatrixType,_UpLo,Derived> Dec;
595
+ EIGEN_MAKE_SPARSE_SOLVE_HELPERS(Dec,Rhs)
596
+
597
+ template<typename Dest> void evalTo(Dest& dst) const
598
+ {
599
+ dec()._solve(rhs(),dst);
600
+ }
601
+ };
602
+
603
+ } // end namespace internal
604
+
605
+ } // end namespace Eigen
606
+
607
+ #endif // EIGEN_CHOLMODSUPPORT_H