ruby-eigen 0.0.9 → 0.0.10.pre1

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Files changed (293) hide show
  1. checksums.yaml +4 -4
  2. data/LICENSE +22 -0
  3. data/README.md +21 -0
  4. data/ext/eigen/eigen3/COPYING.BSD +26 -0
  5. data/ext/eigen/eigen3/COPYING.MPL2 +373 -0
  6. data/ext/eigen/eigen3/COPYING.README +18 -0
  7. data/ext/eigen/eigen3/Eigen/Array +11 -0
  8. data/ext/eigen/eigen3/Eigen/Cholesky +32 -0
  9. data/ext/eigen/eigen3/Eigen/CholmodSupport +45 -0
  10. data/ext/eigen/eigen3/Eigen/Core +376 -0
  11. data/ext/eigen/eigen3/Eigen/Dense +7 -0
  12. data/ext/eigen/eigen3/Eigen/Eigen +2 -0
  13. data/ext/eigen/eigen3/Eigen/Eigen2Support +95 -0
  14. data/ext/eigen/eigen3/Eigen/Eigenvalues +48 -0
  15. data/ext/eigen/eigen3/Eigen/Geometry +63 -0
  16. data/ext/eigen/eigen3/Eigen/Householder +23 -0
  17. data/ext/eigen/eigen3/Eigen/IterativeLinearSolvers +40 -0
  18. data/ext/eigen/eigen3/Eigen/Jacobi +26 -0
  19. data/ext/eigen/eigen3/Eigen/LU +41 -0
  20. data/ext/eigen/eigen3/Eigen/LeastSquares +32 -0
  21. data/ext/eigen/eigen3/Eigen/MetisSupport +28 -0
  22. data/ext/eigen/eigen3/Eigen/PaStiXSupport +46 -0
  23. data/ext/eigen/eigen3/Eigen/PardisoSupport +30 -0
  24. data/ext/eigen/eigen3/Eigen/QR +45 -0
  25. data/ext/eigen/eigen3/Eigen/QtAlignedMalloc +34 -0
  26. data/ext/eigen/eigen3/Eigen/SPQRSupport +29 -0
  27. data/ext/eigen/eigen3/Eigen/SVD +37 -0
  28. data/ext/eigen/eigen3/Eigen/Sparse +27 -0
  29. data/ext/eigen/eigen3/Eigen/SparseCore +64 -0
  30. data/ext/eigen/eigen3/Eigen/SparseLU +49 -0
  31. data/ext/eigen/eigen3/Eigen/SparseQR +33 -0
  32. data/ext/eigen/eigen3/Eigen/StdDeque +27 -0
  33. data/ext/eigen/eigen3/Eigen/StdList +26 -0
  34. data/ext/eigen/eigen3/Eigen/StdVector +27 -0
  35. data/ext/eigen/eigen3/Eigen/SuperLUSupport +59 -0
  36. data/ext/eigen/eigen3/Eigen/UmfPackSupport +36 -0
  37. data/ext/eigen/eigen3/Eigen/src/Cholesky/LDLT.h +611 -0
  38. data/ext/eigen/eigen3/Eigen/src/Cholesky/LLT.h +498 -0
  39. data/ext/eigen/eigen3/Eigen/src/Cholesky/LLT_MKL.h +102 -0
  40. data/ext/eigen/eigen3/Eigen/src/CholmodSupport/CholmodSupport.h +607 -0
  41. data/ext/eigen/eigen3/Eigen/src/Core/Array.h +323 -0
  42. data/ext/eigen/eigen3/Eigen/src/Core/ArrayBase.h +226 -0
  43. data/ext/eigen/eigen3/Eigen/src/Core/ArrayWrapper.h +264 -0
  44. data/ext/eigen/eigen3/Eigen/src/Core/Assign.h +590 -0
  45. data/ext/eigen/eigen3/Eigen/src/Core/Assign_MKL.h +224 -0
  46. data/ext/eigen/eigen3/Eigen/src/Core/BandMatrix.h +334 -0
  47. data/ext/eigen/eigen3/Eigen/src/Core/Block.h +406 -0
  48. data/ext/eigen/eigen3/Eigen/src/Core/BooleanRedux.h +154 -0
  49. data/ext/eigen/eigen3/Eigen/src/Core/CommaInitializer.h +154 -0
  50. data/ext/eigen/eigen3/Eigen/src/Core/CoreIterators.h +61 -0
  51. data/ext/eigen/eigen3/Eigen/src/Core/CwiseBinaryOp.h +230 -0
  52. data/ext/eigen/eigen3/Eigen/src/Core/CwiseNullaryOp.h +864 -0
  53. data/ext/eigen/eigen3/Eigen/src/Core/CwiseUnaryOp.h +126 -0
  54. data/ext/eigen/eigen3/Eigen/src/Core/CwiseUnaryView.h +139 -0
  55. data/ext/eigen/eigen3/Eigen/src/Core/DenseBase.h +521 -0
  56. data/ext/eigen/eigen3/Eigen/src/Core/DenseCoeffsBase.h +754 -0
  57. data/ext/eigen/eigen3/Eigen/src/Core/DenseStorage.h +434 -0
  58. data/ext/eigen/eigen3/Eigen/src/Core/Diagonal.h +237 -0
  59. data/ext/eigen/eigen3/Eigen/src/Core/DiagonalMatrix.h +313 -0
  60. data/ext/eigen/eigen3/Eigen/src/Core/DiagonalProduct.h +131 -0
  61. data/ext/eigen/eigen3/Eigen/src/Core/Dot.h +263 -0
  62. data/ext/eigen/eigen3/Eigen/src/Core/EigenBase.h +131 -0
  63. data/ext/eigen/eigen3/Eigen/src/Core/Flagged.h +140 -0
  64. data/ext/eigen/eigen3/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  65. data/ext/eigen/eigen3/Eigen/src/Core/Functors.h +1026 -0
  66. data/ext/eigen/eigen3/Eigen/src/Core/Fuzzy.h +150 -0
  67. data/ext/eigen/eigen3/Eigen/src/Core/GeneralProduct.h +635 -0
  68. data/ext/eigen/eigen3/Eigen/src/Core/GenericPacketMath.h +350 -0
  69. data/ext/eigen/eigen3/Eigen/src/Core/GlobalFunctions.h +92 -0
  70. data/ext/eigen/eigen3/Eigen/src/Core/IO.h +250 -0
  71. data/ext/eigen/eigen3/Eigen/src/Core/Map.h +192 -0
  72. data/ext/eigen/eigen3/Eigen/src/Core/MapBase.h +247 -0
  73. data/ext/eigen/eigen3/Eigen/src/Core/MathFunctions.h +768 -0
  74. data/ext/eigen/eigen3/Eigen/src/Core/Matrix.h +420 -0
  75. data/ext/eigen/eigen3/Eigen/src/Core/MatrixBase.h +563 -0
  76. data/ext/eigen/eigen3/Eigen/src/Core/NestByValue.h +111 -0
  77. data/ext/eigen/eigen3/Eigen/src/Core/NoAlias.h +134 -0
  78. data/ext/eigen/eigen3/Eigen/src/Core/NumTraits.h +150 -0
  79. data/ext/eigen/eigen3/Eigen/src/Core/PermutationMatrix.h +721 -0
  80. data/ext/eigen/eigen3/Eigen/src/Core/PlainObjectBase.h +822 -0
  81. data/ext/eigen/eigen3/Eigen/src/Core/ProductBase.h +290 -0
  82. data/ext/eigen/eigen3/Eigen/src/Core/Random.h +152 -0
  83. data/ext/eigen/eigen3/Eigen/src/Core/Redux.h +409 -0
  84. data/ext/eigen/eigen3/Eigen/src/Core/Ref.h +278 -0
  85. data/ext/eigen/eigen3/Eigen/src/Core/Replicate.h +177 -0
  86. data/ext/eigen/eigen3/Eigen/src/Core/ReturnByValue.h +99 -0
  87. data/ext/eigen/eigen3/Eigen/src/Core/Reverse.h +224 -0
  88. data/ext/eigen/eigen3/Eigen/src/Core/Select.h +162 -0
  89. data/ext/eigen/eigen3/Eigen/src/Core/SelfAdjointView.h +314 -0
  90. data/ext/eigen/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h +191 -0
  91. data/ext/eigen/eigen3/Eigen/src/Core/SolveTriangular.h +260 -0
  92. data/ext/eigen/eigen3/Eigen/src/Core/StableNorm.h +203 -0
  93. data/ext/eigen/eigen3/Eigen/src/Core/Stride.h +108 -0
  94. data/ext/eigen/eigen3/Eigen/src/Core/Swap.h +126 -0
  95. data/ext/eigen/eigen3/Eigen/src/Core/Transpose.h +419 -0
  96. data/ext/eigen/eigen3/Eigen/src/Core/Transpositions.h +436 -0
  97. data/ext/eigen/eigen3/Eigen/src/Core/TriangularMatrix.h +839 -0
  98. data/ext/eigen/eigen3/Eigen/src/Core/VectorBlock.h +95 -0
  99. data/ext/eigen/eigen3/Eigen/src/Core/VectorwiseOp.h +642 -0
  100. data/ext/eigen/eigen3/Eigen/src/Core/Visitor.h +237 -0
  101. data/ext/eigen/eigen3/Eigen/src/Core/arch/AltiVec/Complex.h +217 -0
  102. data/ext/eigen/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h +501 -0
  103. data/ext/eigen/eigen3/Eigen/src/Core/arch/Default/Settings.h +49 -0
  104. data/ext/eigen/eigen3/Eigen/src/Core/arch/NEON/Complex.h +253 -0
  105. data/ext/eigen/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h +420 -0
  106. data/ext/eigen/eigen3/Eigen/src/Core/arch/SSE/Complex.h +442 -0
  107. data/ext/eigen/eigen3/Eigen/src/Core/arch/SSE/MathFunctions.h +475 -0
  108. data/ext/eigen/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h +649 -0
  109. data/ext/eigen/eigen3/Eigen/src/Core/products/CoeffBasedProduct.h +476 -0
  110. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1341 -0
  111. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h +427 -0
  112. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +278 -0
  113. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h +146 -0
  114. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h +118 -0
  115. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixVector.h +566 -0
  116. data/ext/eigen/eigen3/Eigen/src/Core/products/GeneralMatrixVector_MKL.h +131 -0
  117. data/ext/eigen/eigen3/Eigen/src/Core/products/Parallelizer.h +162 -0
  118. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +436 -0
  119. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h +295 -0
  120. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector.h +281 -0
  121. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h +114 -0
  122. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointProduct.h +123 -0
  123. data/ext/eigen/eigen3/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  124. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix.h +427 -0
  125. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h +309 -0
  126. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h +348 -0
  127. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularMatrixVector_MKL.h +247 -0
  128. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularSolverMatrix.h +332 -0
  129. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h +155 -0
  130. data/ext/eigen/eigen3/Eigen/src/Core/products/TriangularSolverVector.h +139 -0
  131. data/ext/eigen/eigen3/Eigen/src/Core/util/BlasUtil.h +264 -0
  132. data/ext/eigen/eigen3/Eigen/src/Core/util/Constants.h +451 -0
  133. data/ext/eigen/eigen3/Eigen/src/Core/util/DisableStupidWarnings.h +40 -0
  134. data/ext/eigen/eigen3/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  135. data/ext/eigen/eigen3/Eigen/src/Core/util/MKL_support.h +158 -0
  136. data/ext/eigen/eigen3/Eigen/src/Core/util/Macros.h +451 -0
  137. data/ext/eigen/eigen3/Eigen/src/Core/util/Memory.h +977 -0
  138. data/ext/eigen/eigen3/Eigen/src/Core/util/Meta.h +243 -0
  139. data/ext/eigen/eigen3/Eigen/src/Core/util/NonMPL2.h +3 -0
  140. data/ext/eigen/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h +14 -0
  141. data/ext/eigen/eigen3/Eigen/src/Core/util/StaticAssert.h +208 -0
  142. data/ext/eigen/eigen3/Eigen/src/Core/util/XprHelper.h +469 -0
  143. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Block.h +126 -0
  144. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Cwise.h +192 -0
  145. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/CwiseOperators.h +298 -0
  146. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/AlignedBox.h +159 -0
  147. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/All.h +115 -0
  148. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/AngleAxis.h +214 -0
  149. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Hyperplane.h +254 -0
  150. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h +141 -0
  151. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Quaternion.h +495 -0
  152. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Rotation2D.h +145 -0
  153. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/RotationBase.h +123 -0
  154. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Scaling.h +167 -0
  155. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Transform.h +786 -0
  156. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Geometry/Translation.h +184 -0
  157. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/LU.h +120 -0
  158. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Lazy.h +71 -0
  159. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/LeastSquares.h +169 -0
  160. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Macros.h +20 -0
  161. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/MathFunctions.h +57 -0
  162. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Memory.h +45 -0
  163. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Meta.h +75 -0
  164. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/Minor.h +117 -0
  165. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/QR.h +67 -0
  166. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/SVD.h +637 -0
  167. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/TriangularSolver.h +42 -0
  168. data/ext/eigen/eigen3/Eigen/src/Eigen2Support/VectorBlock.h +94 -0
  169. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/ComplexEigenSolver.h +341 -0
  170. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/ComplexSchur.h +456 -0
  171. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/ComplexSchur_MKL.h +94 -0
  172. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/EigenSolver.h +607 -0
  173. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +350 -0
  174. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +227 -0
  175. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/HessenbergDecomposition.h +373 -0
  176. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +160 -0
  177. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/RealQZ.h +624 -0
  178. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/RealSchur.h +525 -0
  179. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/RealSchur_MKL.h +83 -0
  180. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +801 -0
  181. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h +92 -0
  182. data/ext/eigen/eigen3/Eigen/src/Eigenvalues/Tridiagonalization.h +557 -0
  183. data/ext/eigen/eigen3/Eigen/src/Geometry/AlignedBox.h +392 -0
  184. data/ext/eigen/eigen3/Eigen/src/Geometry/AngleAxis.h +233 -0
  185. data/ext/eigen/eigen3/Eigen/src/Geometry/EulerAngles.h +104 -0
  186. data/ext/eigen/eigen3/Eigen/src/Geometry/Homogeneous.h +307 -0
  187. data/ext/eigen/eigen3/Eigen/src/Geometry/Hyperplane.h +280 -0
  188. data/ext/eigen/eigen3/Eigen/src/Geometry/OrthoMethods.h +218 -0
  189. data/ext/eigen/eigen3/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  190. data/ext/eigen/eigen3/Eigen/src/Geometry/Quaternion.h +776 -0
  191. data/ext/eigen/eigen3/Eigen/src/Geometry/Rotation2D.h +160 -0
  192. data/ext/eigen/eigen3/Eigen/src/Geometry/RotationBase.h +206 -0
  193. data/ext/eigen/eigen3/Eigen/src/Geometry/Scaling.h +166 -0
  194. data/ext/eigen/eigen3/Eigen/src/Geometry/Transform.h +1455 -0
  195. data/ext/eigen/eigen3/Eigen/src/Geometry/Translation.h +206 -0
  196. data/ext/eigen/eigen3/Eigen/src/Geometry/Umeyama.h +177 -0
  197. data/ext/eigen/eigen3/Eigen/src/Geometry/arch/Geometry_SSE.h +115 -0
  198. data/ext/eigen/eigen3/Eigen/src/Householder/BlockHouseholder.h +68 -0
  199. data/ext/eigen/eigen3/Eigen/src/Householder/Householder.h +171 -0
  200. data/ext/eigen/eigen3/Eigen/src/Householder/HouseholderSequence.h +441 -0
  201. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +149 -0
  202. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +263 -0
  203. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +256 -0
  204. data/ext/eigen/eigen3/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +282 -0
  205. data/ext/eigen/eigen3/Eigen/src/Jacobi/Jacobi.h +433 -0
  206. data/ext/eigen/eigen3/Eigen/src/LU/Determinant.h +101 -0
  207. data/ext/eigen/eigen3/Eigen/src/LU/FullPivLU.h +751 -0
  208. data/ext/eigen/eigen3/Eigen/src/LU/Inverse.h +400 -0
  209. data/ext/eigen/eigen3/Eigen/src/LU/PartialPivLU.h +509 -0
  210. data/ext/eigen/eigen3/Eigen/src/LU/PartialPivLU_MKL.h +85 -0
  211. data/ext/eigen/eigen3/Eigen/src/LU/arch/Inverse_SSE.h +329 -0
  212. data/ext/eigen/eigen3/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  213. data/ext/eigen/eigen3/Eigen/src/OrderingMethods/Amd.h +444 -0
  214. data/ext/eigen/eigen3/Eigen/src/OrderingMethods/Eigen_Colamd.h +1850 -0
  215. data/ext/eigen/eigen3/Eigen/src/PaStiXSupport/PaStiXSupport.h +721 -0
  216. data/ext/eigen/eigen3/Eigen/src/PardisoSupport/PardisoSupport.h +592 -0
  217. data/ext/eigen/eigen3/Eigen/src/QR/ColPivHouseholderQR.h +580 -0
  218. data/ext/eigen/eigen3/Eigen/src/QR/ColPivHouseholderQR_MKL.h +99 -0
  219. data/ext/eigen/eigen3/Eigen/src/QR/FullPivHouseholderQR.h +622 -0
  220. data/ext/eigen/eigen3/Eigen/src/QR/HouseholderQR.h +388 -0
  221. data/ext/eigen/eigen3/Eigen/src/QR/HouseholderQR_MKL.h +71 -0
  222. data/ext/eigen/eigen3/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +338 -0
  223. data/ext/eigen/eigen3/Eigen/src/SVD/JacobiSVD.h +976 -0
  224. data/ext/eigen/eigen3/Eigen/src/SVD/JacobiSVD_MKL.h +92 -0
  225. data/ext/eigen/eigen3/Eigen/src/SVD/UpperBidiagonalization.h +148 -0
  226. data/ext/eigen/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky.h +671 -0
  227. data/ext/eigen/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  228. data/ext/eigen/eigen3/Eigen/src/SparseCore/AmbiVector.h +373 -0
  229. data/ext/eigen/eigen3/Eigen/src/SparseCore/CompressedStorage.h +233 -0
  230. data/ext/eigen/eigen3/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +245 -0
  231. data/ext/eigen/eigen3/Eigen/src/SparseCore/MappedSparseMatrix.h +181 -0
  232. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseBlock.h +537 -0
  233. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  234. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +325 -0
  235. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +163 -0
  236. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseDenseProduct.h +311 -0
  237. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseDiagonalProduct.h +196 -0
  238. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseDot.h +101 -0
  239. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseFuzzy.h +26 -0
  240. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseMatrix.h +1262 -0
  241. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseMatrixBase.h +461 -0
  242. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparsePermutation.h +148 -0
  243. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseProduct.h +188 -0
  244. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseRedux.h +45 -0
  245. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseSelfAdjointView.h +507 -0
  246. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +150 -0
  247. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseTranspose.h +63 -0
  248. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseTriangularView.h +179 -0
  249. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseUtil.h +172 -0
  250. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseVector.h +448 -0
  251. data/ext/eigen/eigen3/Eigen/src/SparseCore/SparseView.h +99 -0
  252. data/ext/eigen/eigen3/Eigen/src/SparseCore/TriangularSolver.h +334 -0
  253. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU.h +806 -0
  254. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  255. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_Memory.h +227 -0
  256. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_Structs.h +111 -0
  257. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +298 -0
  258. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  259. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_column_bmod.h +180 -0
  260. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_column_dfs.h +177 -0
  261. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +106 -0
  262. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +279 -0
  263. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +127 -0
  264. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  265. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  266. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  267. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  268. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_pruneL.h +135 -0
  269. data/ext/eigen/eigen3/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  270. data/ext/eigen/eigen3/Eigen/src/SparseQR/SparseQR.h +714 -0
  271. data/ext/eigen/eigen3/Eigen/src/StlSupport/StdDeque.h +134 -0
  272. data/ext/eigen/eigen3/Eigen/src/StlSupport/StdList.h +114 -0
  273. data/ext/eigen/eigen3/Eigen/src/StlSupport/StdVector.h +126 -0
  274. data/ext/eigen/eigen3/Eigen/src/StlSupport/details.h +84 -0
  275. data/ext/eigen/eigen3/Eigen/src/SuperLUSupport/SuperLUSupport.h +1026 -0
  276. data/ext/eigen/eigen3/Eigen/src/UmfPackSupport/UmfPackSupport.h +474 -0
  277. data/ext/eigen/eigen3/Eigen/src/misc/Image.h +84 -0
  278. data/ext/eigen/eigen3/Eigen/src/misc/Kernel.h +81 -0
  279. data/ext/eigen/eigen3/Eigen/src/misc/Solve.h +76 -0
  280. data/ext/eigen/eigen3/Eigen/src/misc/SparseSolve.h +128 -0
  281. data/ext/eigen/eigen3/Eigen/src/misc/blas.h +658 -0
  282. data/ext/eigen/eigen3/Eigen/src/plugins/ArrayCwiseBinaryOps.h +253 -0
  283. data/ext/eigen/eigen3/Eigen/src/plugins/ArrayCwiseUnaryOps.h +187 -0
  284. data/ext/eigen/eigen3/Eigen/src/plugins/BlockMethods.h +935 -0
  285. data/ext/eigen/eigen3/Eigen/src/plugins/CommonCwiseBinaryOps.h +46 -0
  286. data/ext/eigen/eigen3/Eigen/src/plugins/CommonCwiseUnaryOps.h +172 -0
  287. data/ext/eigen/eigen3/Eigen/src/plugins/MatrixCwiseBinaryOps.h +143 -0
  288. data/ext/eigen/eigen3/Eigen/src/plugins/MatrixCwiseUnaryOps.h +52 -0
  289. data/ext/eigen/eigen3/signature_of_eigen3_matrix_library +1 -0
  290. data/ext/eigen/eigen_wrap.cxx +19420 -10396
  291. data/ext/eigen/extconf.rb +37 -2
  292. data/lib/eigen.rb +146 -3
  293. metadata +294 -7
@@ -0,0 +1,102 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to Intel(R) MKL
29
+ * LLt decomposition based on LAPACKE_?potrf function.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_LLT_MKL_H
34
+ #define EIGEN_LLT_MKL_H
35
+
36
+ #include "Eigen/src/Core/util/MKL_support.h"
37
+ #include <iostream>
38
+
39
+ namespace Eigen {
40
+
41
+ namespace internal {
42
+
43
+ template<typename Scalar> struct mkl_llt;
44
+
45
+ #define EIGEN_MKL_LLT(EIGTYPE, MKLTYPE, MKLPREFIX) \
46
+ template<> struct mkl_llt<EIGTYPE> \
47
+ { \
48
+ template<typename MatrixType> \
49
+ static inline typename MatrixType::Index potrf(MatrixType& m, char uplo) \
50
+ { \
51
+ lapack_int matrix_order; \
52
+ lapack_int size, lda, info, StorageOrder; \
53
+ EIGTYPE* a; \
54
+ eigen_assert(m.rows()==m.cols()); \
55
+ /* Set up parameters for ?potrf */ \
56
+ size = m.rows(); \
57
+ StorageOrder = MatrixType::Flags&RowMajorBit?RowMajor:ColMajor; \
58
+ matrix_order = StorageOrder==RowMajor ? LAPACK_ROW_MAJOR : LAPACK_COL_MAJOR; \
59
+ a = &(m.coeffRef(0,0)); \
60
+ lda = m.outerStride(); \
61
+ \
62
+ info = LAPACKE_##MKLPREFIX##potrf( matrix_order, uplo, size, (MKLTYPE*)a, lda ); \
63
+ info = (info==0) ? -1 : info>0 ? info-1 : size; \
64
+ return info; \
65
+ } \
66
+ }; \
67
+ template<> struct llt_inplace<EIGTYPE, Lower> \
68
+ { \
69
+ template<typename MatrixType> \
70
+ static typename MatrixType::Index blocked(MatrixType& m) \
71
+ { \
72
+ return mkl_llt<EIGTYPE>::potrf(m, 'L'); \
73
+ } \
74
+ template<typename MatrixType, typename VectorType> \
75
+ static typename MatrixType::Index rankUpdate(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) \
76
+ { return Eigen::internal::llt_rank_update_lower(mat, vec, sigma); } \
77
+ }; \
78
+ template<> struct llt_inplace<EIGTYPE, Upper> \
79
+ { \
80
+ template<typename MatrixType> \
81
+ static typename MatrixType::Index blocked(MatrixType& m) \
82
+ { \
83
+ return mkl_llt<EIGTYPE>::potrf(m, 'U'); \
84
+ } \
85
+ template<typename MatrixType, typename VectorType> \
86
+ static typename MatrixType::Index rankUpdate(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) \
87
+ { \
88
+ Transpose<MatrixType> matt(mat); \
89
+ return llt_inplace<EIGTYPE, Lower>::rankUpdate(matt, vec.conjugate(), sigma); \
90
+ } \
91
+ };
92
+
93
+ EIGEN_MKL_LLT(double, double, d)
94
+ EIGEN_MKL_LLT(float, float, s)
95
+ EIGEN_MKL_LLT(dcomplex, MKL_Complex16, z)
96
+ EIGEN_MKL_LLT(scomplex, MKL_Complex8, c)
97
+
98
+ } // end namespace internal
99
+
100
+ } // end namespace Eigen
101
+
102
+ #endif // EIGEN_LLT_MKL_H
@@ -0,0 +1,607 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_CHOLMODSUPPORT_H
11
+ #define EIGEN_CHOLMODSUPPORT_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename Scalar, typename CholmodType>
18
+ void cholmod_configure_matrix(CholmodType& mat)
19
+ {
20
+ if (internal::is_same<Scalar,float>::value)
21
+ {
22
+ mat.xtype = CHOLMOD_REAL;
23
+ mat.dtype = CHOLMOD_SINGLE;
24
+ }
25
+ else if (internal::is_same<Scalar,double>::value)
26
+ {
27
+ mat.xtype = CHOLMOD_REAL;
28
+ mat.dtype = CHOLMOD_DOUBLE;
29
+ }
30
+ else if (internal::is_same<Scalar,std::complex<float> >::value)
31
+ {
32
+ mat.xtype = CHOLMOD_COMPLEX;
33
+ mat.dtype = CHOLMOD_SINGLE;
34
+ }
35
+ else if (internal::is_same<Scalar,std::complex<double> >::value)
36
+ {
37
+ mat.xtype = CHOLMOD_COMPLEX;
38
+ mat.dtype = CHOLMOD_DOUBLE;
39
+ }
40
+ else
41
+ {
42
+ eigen_assert(false && "Scalar type not supported by CHOLMOD");
43
+ }
44
+ }
45
+
46
+ } // namespace internal
47
+
48
+ /** Wraps the Eigen sparse matrix \a mat into a Cholmod sparse matrix object.
49
+ * Note that the data are shared.
50
+ */
51
+ template<typename _Scalar, int _Options, typename _Index>
52
+ cholmod_sparse viewAsCholmod(SparseMatrix<_Scalar,_Options,_Index>& mat)
53
+ {
54
+ cholmod_sparse res;
55
+ res.nzmax = mat.nonZeros();
56
+ res.nrow = mat.rows();;
57
+ res.ncol = mat.cols();
58
+ res.p = mat.outerIndexPtr();
59
+ res.i = mat.innerIndexPtr();
60
+ res.x = mat.valuePtr();
61
+ res.z = 0;
62
+ res.sorted = 1;
63
+ if(mat.isCompressed())
64
+ {
65
+ res.packed = 1;
66
+ res.nz = 0;
67
+ }
68
+ else
69
+ {
70
+ res.packed = 0;
71
+ res.nz = mat.innerNonZeroPtr();
72
+ }
73
+
74
+ res.dtype = 0;
75
+ res.stype = -1;
76
+
77
+ if (internal::is_same<_Index,int>::value)
78
+ {
79
+ res.itype = CHOLMOD_INT;
80
+ }
81
+ else if (internal::is_same<_Index,SuiteSparse_long>::value)
82
+ {
83
+ res.itype = CHOLMOD_LONG;
84
+ }
85
+ else
86
+ {
87
+ eigen_assert(false && "Index type not supported yet");
88
+ }
89
+
90
+ // setup res.xtype
91
+ internal::cholmod_configure_matrix<_Scalar>(res);
92
+
93
+ res.stype = 0;
94
+
95
+ return res;
96
+ }
97
+
98
+ template<typename _Scalar, int _Options, typename _Index>
99
+ const cholmod_sparse viewAsCholmod(const SparseMatrix<_Scalar,_Options,_Index>& mat)
100
+ {
101
+ cholmod_sparse res = viewAsCholmod(mat.const_cast_derived());
102
+ return res;
103
+ }
104
+
105
+ /** Returns a view of the Eigen sparse matrix \a mat as Cholmod sparse matrix.
106
+ * The data are not copied but shared. */
107
+ template<typename _Scalar, int _Options, typename _Index, unsigned int UpLo>
108
+ cholmod_sparse viewAsCholmod(const SparseSelfAdjointView<SparseMatrix<_Scalar,_Options,_Index>, UpLo>& mat)
109
+ {
110
+ cholmod_sparse res = viewAsCholmod(mat.matrix().const_cast_derived());
111
+
112
+ if(UpLo==Upper) res.stype = 1;
113
+ if(UpLo==Lower) res.stype = -1;
114
+
115
+ return res;
116
+ }
117
+
118
+ /** Returns a view of the Eigen \b dense matrix \a mat as Cholmod dense matrix.
119
+ * The data are not copied but shared. */
120
+ template<typename Derived>
121
+ cholmod_dense viewAsCholmod(MatrixBase<Derived>& mat)
122
+ {
123
+ EIGEN_STATIC_ASSERT((internal::traits<Derived>::Flags&RowMajorBit)==0,THIS_METHOD_IS_ONLY_FOR_COLUMN_MAJOR_MATRICES);
124
+ typedef typename Derived::Scalar Scalar;
125
+
126
+ cholmod_dense res;
127
+ res.nrow = mat.rows();
128
+ res.ncol = mat.cols();
129
+ res.nzmax = res.nrow * res.ncol;
130
+ res.d = Derived::IsVectorAtCompileTime ? mat.derived().size() : mat.derived().outerStride();
131
+ res.x = (void*)(mat.derived().data());
132
+ res.z = 0;
133
+
134
+ internal::cholmod_configure_matrix<Scalar>(res);
135
+
136
+ return res;
137
+ }
138
+
139
+ /** Returns a view of the Cholmod sparse matrix \a cm as an Eigen sparse matrix.
140
+ * The data are not copied but shared. */
141
+ template<typename Scalar, int Flags, typename Index>
142
+ MappedSparseMatrix<Scalar,Flags,Index> viewAsEigen(cholmod_sparse& cm)
143
+ {
144
+ return MappedSparseMatrix<Scalar,Flags,Index>
145
+ (cm.nrow, cm.ncol, static_cast<Index*>(cm.p)[cm.ncol],
146
+ static_cast<Index*>(cm.p), static_cast<Index*>(cm.i),static_cast<Scalar*>(cm.x) );
147
+ }
148
+
149
+ enum CholmodMode {
150
+ CholmodAuto, CholmodSimplicialLLt, CholmodSupernodalLLt, CholmodLDLt
151
+ };
152
+
153
+
154
+ /** \ingroup CholmodSupport_Module
155
+ * \class CholmodBase
156
+ * \brief The base class for the direct Cholesky factorization of Cholmod
157
+ * \sa class CholmodSupernodalLLT, class CholmodSimplicialLDLT, class CholmodSimplicialLLT
158
+ */
159
+ template<typename _MatrixType, int _UpLo, typename Derived>
160
+ class CholmodBase : internal::noncopyable
161
+ {
162
+ public:
163
+ typedef _MatrixType MatrixType;
164
+ enum { UpLo = _UpLo };
165
+ typedef typename MatrixType::Scalar Scalar;
166
+ typedef typename MatrixType::RealScalar RealScalar;
167
+ typedef MatrixType CholMatrixType;
168
+ typedef typename MatrixType::Index Index;
169
+
170
+ public:
171
+
172
+ CholmodBase()
173
+ : m_cholmodFactor(0), m_info(Success), m_isInitialized(false)
174
+ {
175
+ m_shiftOffset[0] = m_shiftOffset[1] = RealScalar(0.0);
176
+ cholmod_start(&m_cholmod);
177
+ }
178
+
179
+ CholmodBase(const MatrixType& matrix)
180
+ : m_cholmodFactor(0), m_info(Success), m_isInitialized(false)
181
+ {
182
+ m_shiftOffset[0] = m_shiftOffset[1] = RealScalar(0.0);
183
+ cholmod_start(&m_cholmod);
184
+ compute(matrix);
185
+ }
186
+
187
+ ~CholmodBase()
188
+ {
189
+ if(m_cholmodFactor)
190
+ cholmod_free_factor(&m_cholmodFactor, &m_cholmod);
191
+ cholmod_finish(&m_cholmod);
192
+ }
193
+
194
+ inline Index cols() const { return m_cholmodFactor->n; }
195
+ inline Index rows() const { return m_cholmodFactor->n; }
196
+
197
+ Derived& derived() { return *static_cast<Derived*>(this); }
198
+ const Derived& derived() const { return *static_cast<const Derived*>(this); }
199
+
200
+ /** \brief Reports whether previous computation was successful.
201
+ *
202
+ * \returns \c Success if computation was succesful,
203
+ * \c NumericalIssue if the matrix.appears to be negative.
204
+ */
205
+ ComputationInfo info() const
206
+ {
207
+ eigen_assert(m_isInitialized && "Decomposition is not initialized.");
208
+ return m_info;
209
+ }
210
+
211
+ /** Computes the sparse Cholesky decomposition of \a matrix */
212
+ Derived& compute(const MatrixType& matrix)
213
+ {
214
+ analyzePattern(matrix);
215
+ factorize(matrix);
216
+ return derived();
217
+ }
218
+
219
+ /** \returns the solution x of \f$ A x = b \f$ using the current decomposition of A.
220
+ *
221
+ * \sa compute()
222
+ */
223
+ template<typename Rhs>
224
+ inline const internal::solve_retval<CholmodBase, Rhs>
225
+ solve(const MatrixBase<Rhs>& b) const
226
+ {
227
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
228
+ eigen_assert(rows()==b.rows()
229
+ && "CholmodDecomposition::solve(): invalid number of rows of the right hand side matrix b");
230
+ return internal::solve_retval<CholmodBase, Rhs>(*this, b.derived());
231
+ }
232
+
233
+ /** \returns the solution x of \f$ A x = b \f$ using the current decomposition of A.
234
+ *
235
+ * \sa compute()
236
+ */
237
+ template<typename Rhs>
238
+ inline const internal::sparse_solve_retval<CholmodBase, Rhs>
239
+ solve(const SparseMatrixBase<Rhs>& b) const
240
+ {
241
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
242
+ eigen_assert(rows()==b.rows()
243
+ && "CholmodDecomposition::solve(): invalid number of rows of the right hand side matrix b");
244
+ return internal::sparse_solve_retval<CholmodBase, Rhs>(*this, b.derived());
245
+ }
246
+
247
+ /** Performs a symbolic decomposition on the sparsity pattern of \a matrix.
248
+ *
249
+ * This function is particularly useful when solving for several problems having the same structure.
250
+ *
251
+ * \sa factorize()
252
+ */
253
+ void analyzePattern(const MatrixType& matrix)
254
+ {
255
+ if(m_cholmodFactor)
256
+ {
257
+ cholmod_free_factor(&m_cholmodFactor, &m_cholmod);
258
+ m_cholmodFactor = 0;
259
+ }
260
+ cholmod_sparse A = viewAsCholmod(matrix.template selfadjointView<UpLo>());
261
+ m_cholmodFactor = cholmod_analyze(&A, &m_cholmod);
262
+
263
+ this->m_isInitialized = true;
264
+ this->m_info = Success;
265
+ m_analysisIsOk = true;
266
+ m_factorizationIsOk = false;
267
+ }
268
+
269
+ /** Performs a numeric decomposition of \a matrix
270
+ *
271
+ * The given matrix must have the same sparsity pattern as the matrix on which the symbolic decomposition has been performed.
272
+ *
273
+ * \sa analyzePattern()
274
+ */
275
+ void factorize(const MatrixType& matrix)
276
+ {
277
+ eigen_assert(m_analysisIsOk && "You must first call analyzePattern()");
278
+ cholmod_sparse A = viewAsCholmod(matrix.template selfadjointView<UpLo>());
279
+ cholmod_factorize_p(&A, m_shiftOffset, 0, 0, m_cholmodFactor, &m_cholmod);
280
+
281
+ // If the factorization failed, minor is the column at which it did. On success minor == n.
282
+ this->m_info = (m_cholmodFactor->minor == m_cholmodFactor->n ? Success : NumericalIssue);
283
+ m_factorizationIsOk = true;
284
+ }
285
+
286
+ /** Returns a reference to the Cholmod's configuration structure to get a full control over the performed operations.
287
+ * See the Cholmod user guide for details. */
288
+ cholmod_common& cholmod() { return m_cholmod; }
289
+
290
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
291
+ /** \internal */
292
+ template<typename Rhs,typename Dest>
293
+ void _solve(const MatrixBase<Rhs> &b, MatrixBase<Dest> &dest) const
294
+ {
295
+ eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
296
+ const Index size = m_cholmodFactor->n;
297
+ EIGEN_UNUSED_VARIABLE(size);
298
+ eigen_assert(size==b.rows());
299
+
300
+ // note: cd stands for Cholmod Dense
301
+ Rhs& b_ref(b.const_cast_derived());
302
+ cholmod_dense b_cd = viewAsCholmod(b_ref);
303
+ cholmod_dense* x_cd = cholmod_solve(CHOLMOD_A, m_cholmodFactor, &b_cd, &m_cholmod);
304
+ if(!x_cd)
305
+ {
306
+ this->m_info = NumericalIssue;
307
+ }
308
+ // TODO optimize this copy by swapping when possible (be careful with alignment, etc.)
309
+ dest = Matrix<Scalar,Dest::RowsAtCompileTime,Dest::ColsAtCompileTime>::Map(reinterpret_cast<Scalar*>(x_cd->x),b.rows(),b.cols());
310
+ cholmod_free_dense(&x_cd, &m_cholmod);
311
+ }
312
+
313
+ /** \internal */
314
+ template<typename RhsScalar, int RhsOptions, typename RhsIndex, typename DestScalar, int DestOptions, typename DestIndex>
315
+ void _solve(const SparseMatrix<RhsScalar,RhsOptions,RhsIndex> &b, SparseMatrix<DestScalar,DestOptions,DestIndex> &dest) const
316
+ {
317
+ eigen_assert(m_factorizationIsOk && "The decomposition is not in a valid state for solving, you must first call either compute() or symbolic()/numeric()");
318
+ const Index size = m_cholmodFactor->n;
319
+ EIGEN_UNUSED_VARIABLE(size);
320
+ eigen_assert(size==b.rows());
321
+
322
+ // note: cs stands for Cholmod Sparse
323
+ cholmod_sparse b_cs = viewAsCholmod(b);
324
+ cholmod_sparse* x_cs = cholmod_spsolve(CHOLMOD_A, m_cholmodFactor, &b_cs, &m_cholmod);
325
+ if(!x_cs)
326
+ {
327
+ this->m_info = NumericalIssue;
328
+ }
329
+ // TODO optimize this copy by swapping when possible (be careful with alignment, etc.)
330
+ dest = viewAsEigen<DestScalar,DestOptions,DestIndex>(*x_cs);
331
+ cholmod_free_sparse(&x_cs, &m_cholmod);
332
+ }
333
+ #endif // EIGEN_PARSED_BY_DOXYGEN
334
+
335
+
336
+ /** Sets the shift parameter that will be used to adjust the diagonal coefficients during the numerical factorization.
337
+ *
338
+ * During the numerical factorization, an offset term is added to the diagonal coefficients:\n
339
+ * \c d_ii = \a offset + \c d_ii
340
+ *
341
+ * The default is \a offset=0.
342
+ *
343
+ * \returns a reference to \c *this.
344
+ */
345
+ Derived& setShift(const RealScalar& offset)
346
+ {
347
+ m_shiftOffset[0] = offset;
348
+ return derived();
349
+ }
350
+
351
+ template<typename Stream>
352
+ void dumpMemory(Stream& /*s*/)
353
+ {}
354
+
355
+ protected:
356
+ mutable cholmod_common m_cholmod;
357
+ cholmod_factor* m_cholmodFactor;
358
+ RealScalar m_shiftOffset[2];
359
+ mutable ComputationInfo m_info;
360
+ bool m_isInitialized;
361
+ int m_factorizationIsOk;
362
+ int m_analysisIsOk;
363
+ };
364
+
365
+ /** \ingroup CholmodSupport_Module
366
+ * \class CholmodSimplicialLLT
367
+ * \brief A simplicial direct Cholesky (LLT) factorization and solver based on Cholmod
368
+ *
369
+ * This class allows to solve for A.X = B sparse linear problems via a simplicial LL^T Cholesky factorization
370
+ * using the Cholmod library.
371
+ * This simplicial variant is equivalent to Eigen's built-in SimplicialLLT class. Therefore, it has little practical interest.
372
+ * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
373
+ * X and B can be either dense or sparse.
374
+ *
375
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
376
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
377
+ * or Upper. Default is Lower.
378
+ *
379
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
380
+ *
381
+ * \sa \ref TutorialSparseDirectSolvers, class CholmodSupernodalLLT, class SimplicialLLT
382
+ */
383
+ template<typename _MatrixType, int _UpLo = Lower>
384
+ class CholmodSimplicialLLT : public CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLLT<_MatrixType, _UpLo> >
385
+ {
386
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLLT> Base;
387
+ using Base::m_cholmod;
388
+
389
+ public:
390
+
391
+ typedef _MatrixType MatrixType;
392
+
393
+ CholmodSimplicialLLT() : Base() { init(); }
394
+
395
+ CholmodSimplicialLLT(const MatrixType& matrix) : Base()
396
+ {
397
+ init();
398
+ Base::compute(matrix);
399
+ }
400
+
401
+ ~CholmodSimplicialLLT() {}
402
+ protected:
403
+ void init()
404
+ {
405
+ m_cholmod.final_asis = 0;
406
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
407
+ m_cholmod.final_ll = 1;
408
+ }
409
+ };
410
+
411
+
412
+ /** \ingroup CholmodSupport_Module
413
+ * \class CholmodSimplicialLDLT
414
+ * \brief A simplicial direct Cholesky (LDLT) factorization and solver based on Cholmod
415
+ *
416
+ * This class allows to solve for A.X = B sparse linear problems via a simplicial LDL^T Cholesky factorization
417
+ * using the Cholmod library.
418
+ * This simplicial variant is equivalent to Eigen's built-in SimplicialLDLT class. Therefore, it has little practical interest.
419
+ * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
420
+ * X and B can be either dense or sparse.
421
+ *
422
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
423
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
424
+ * or Upper. Default is Lower.
425
+ *
426
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
427
+ *
428
+ * \sa \ref TutorialSparseDirectSolvers, class CholmodSupernodalLLT, class SimplicialLDLT
429
+ */
430
+ template<typename _MatrixType, int _UpLo = Lower>
431
+ class CholmodSimplicialLDLT : public CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLDLT<_MatrixType, _UpLo> >
432
+ {
433
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodSimplicialLDLT> Base;
434
+ using Base::m_cholmod;
435
+
436
+ public:
437
+
438
+ typedef _MatrixType MatrixType;
439
+
440
+ CholmodSimplicialLDLT() : Base() { init(); }
441
+
442
+ CholmodSimplicialLDLT(const MatrixType& matrix) : Base()
443
+ {
444
+ init();
445
+ Base::compute(matrix);
446
+ }
447
+
448
+ ~CholmodSimplicialLDLT() {}
449
+ protected:
450
+ void init()
451
+ {
452
+ m_cholmod.final_asis = 1;
453
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
454
+ }
455
+ };
456
+
457
+ /** \ingroup CholmodSupport_Module
458
+ * \class CholmodSupernodalLLT
459
+ * \brief A supernodal Cholesky (LLT) factorization and solver based on Cholmod
460
+ *
461
+ * This class allows to solve for A.X = B sparse linear problems via a supernodal LL^T Cholesky factorization
462
+ * using the Cholmod library.
463
+ * This supernodal variant performs best on dense enough problems, e.g., 3D FEM, or very high order 2D FEM.
464
+ * The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
465
+ * X and B can be either dense or sparse.
466
+ *
467
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
468
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
469
+ * or Upper. Default is Lower.
470
+ *
471
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
472
+ *
473
+ * \sa \ref TutorialSparseDirectSolvers
474
+ */
475
+ template<typename _MatrixType, int _UpLo = Lower>
476
+ class CholmodSupernodalLLT : public CholmodBase<_MatrixType, _UpLo, CholmodSupernodalLLT<_MatrixType, _UpLo> >
477
+ {
478
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodSupernodalLLT> Base;
479
+ using Base::m_cholmod;
480
+
481
+ public:
482
+
483
+ typedef _MatrixType MatrixType;
484
+
485
+ CholmodSupernodalLLT() : Base() { init(); }
486
+
487
+ CholmodSupernodalLLT(const MatrixType& matrix) : Base()
488
+ {
489
+ init();
490
+ Base::compute(matrix);
491
+ }
492
+
493
+ ~CholmodSupernodalLLT() {}
494
+ protected:
495
+ void init()
496
+ {
497
+ m_cholmod.final_asis = 1;
498
+ m_cholmod.supernodal = CHOLMOD_SUPERNODAL;
499
+ }
500
+ };
501
+
502
+ /** \ingroup CholmodSupport_Module
503
+ * \class CholmodDecomposition
504
+ * \brief A general Cholesky factorization and solver based on Cholmod
505
+ *
506
+ * This class allows to solve for A.X = B sparse linear problems via a LL^T or LDL^T Cholesky factorization
507
+ * using the Cholmod library. The sparse matrix A must be selfadjoint and positive definite. The vectors or matrices
508
+ * X and B can be either dense or sparse.
509
+ *
510
+ * This variant permits to change the underlying Cholesky method at runtime.
511
+ * On the other hand, it does not provide access to the result of the factorization.
512
+ * The default is to let Cholmod automatically choose between a simplicial and supernodal factorization.
513
+ *
514
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
515
+ * \tparam _UpLo the triangular part that will be used for the computations. It can be Lower
516
+ * or Upper. Default is Lower.
517
+ *
518
+ * This class supports all kind of SparseMatrix<>: row or column major; upper, lower, or both; compressed or non compressed.
519
+ *
520
+ * \sa \ref TutorialSparseDirectSolvers
521
+ */
522
+ template<typename _MatrixType, int _UpLo = Lower>
523
+ class CholmodDecomposition : public CholmodBase<_MatrixType, _UpLo, CholmodDecomposition<_MatrixType, _UpLo> >
524
+ {
525
+ typedef CholmodBase<_MatrixType, _UpLo, CholmodDecomposition> Base;
526
+ using Base::m_cholmod;
527
+
528
+ public:
529
+
530
+ typedef _MatrixType MatrixType;
531
+
532
+ CholmodDecomposition() : Base() { init(); }
533
+
534
+ CholmodDecomposition(const MatrixType& matrix) : Base()
535
+ {
536
+ init();
537
+ Base::compute(matrix);
538
+ }
539
+
540
+ ~CholmodDecomposition() {}
541
+
542
+ void setMode(CholmodMode mode)
543
+ {
544
+ switch(mode)
545
+ {
546
+ case CholmodAuto:
547
+ m_cholmod.final_asis = 1;
548
+ m_cholmod.supernodal = CHOLMOD_AUTO;
549
+ break;
550
+ case CholmodSimplicialLLt:
551
+ m_cholmod.final_asis = 0;
552
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
553
+ m_cholmod.final_ll = 1;
554
+ break;
555
+ case CholmodSupernodalLLt:
556
+ m_cholmod.final_asis = 1;
557
+ m_cholmod.supernodal = CHOLMOD_SUPERNODAL;
558
+ break;
559
+ case CholmodLDLt:
560
+ m_cholmod.final_asis = 1;
561
+ m_cholmod.supernodal = CHOLMOD_SIMPLICIAL;
562
+ break;
563
+ default:
564
+ break;
565
+ }
566
+ }
567
+ protected:
568
+ void init()
569
+ {
570
+ m_cholmod.final_asis = 1;
571
+ m_cholmod.supernodal = CHOLMOD_AUTO;
572
+ }
573
+ };
574
+
575
+ namespace internal {
576
+
577
+ template<typename _MatrixType, int _UpLo, typename Derived, typename Rhs>
578
+ struct solve_retval<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
579
+ : solve_retval_base<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
580
+ {
581
+ typedef CholmodBase<_MatrixType,_UpLo,Derived> Dec;
582
+ EIGEN_MAKE_SOLVE_HELPERS(Dec,Rhs)
583
+
584
+ template<typename Dest> void evalTo(Dest& dst) const
585
+ {
586
+ dec()._solve(rhs(),dst);
587
+ }
588
+ };
589
+
590
+ template<typename _MatrixType, int _UpLo, typename Derived, typename Rhs>
591
+ struct sparse_solve_retval<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
592
+ : sparse_solve_retval_base<CholmodBase<_MatrixType,_UpLo,Derived>, Rhs>
593
+ {
594
+ typedef CholmodBase<_MatrixType,_UpLo,Derived> Dec;
595
+ EIGEN_MAKE_SPARSE_SOLVE_HELPERS(Dec,Rhs)
596
+
597
+ template<typename Dest> void evalTo(Dest& dst) const
598
+ {
599
+ dec()._solve(rhs(),dst);
600
+ }
601
+ };
602
+
603
+ } // end namespace internal
604
+
605
+ } // end namespace Eigen
606
+
607
+ #endif // EIGEN_CHOLMODSUPPORT_H