ojxv 0.0.2 → 1.0.0

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Files changed (913) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +77 -2
  3. data/lib/ojxv/crossref_metadata_file.rb +49 -0
  4. data/lib/ojxv/jats_file.rb +64 -0
  5. data/lib/ojxv/schemas/crossref/AccessIndicators.xsd +64 -0
  6. data/lib/ojxv/schemas/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
  7. data/lib/ojxv/schemas/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
  8. data/lib/ojxv/schemas/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
  9. data/lib/ojxv/schemas/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
  10. data/lib/ojxv/schemas/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
  11. data/lib/ojxv/schemas/crossref/JATS-journalpublishing1.xsd +6176 -0
  12. data/lib/ojxv/schemas/crossref/NLM.JATS2CrossRef.v1.0.xsl +554 -0
  13. data/lib/ojxv/schemas/crossref/NLM2CrossRef.xsl +577 -0
  14. data/lib/ojxv/schemas/crossref/OAI-PMH.cr.xsd +280 -0
  15. data/lib/ojxv/schemas/crossref/OAI-PMH.xsd +317 -0
  16. data/lib/ojxv/schemas/crossref/clinicaltrials.xsd +61 -0
  17. data/lib/ojxv/schemas/crossref/common4.8.0.xsd +1606 -0
  18. data/lib/ojxv/schemas/crossref/common4.8.1.xsd +1606 -0
  19. data/lib/ojxv/schemas/crossref/common5.1.0.xsd +1606 -0
  20. data/lib/ojxv/schemas/crossref/common5.2.0.xsd +1606 -0
  21. data/lib/ojxv/schemas/crossref/common5.3.0.xsd +1606 -0
  22. data/lib/ojxv/schemas/crossref/common5.3.1.xsd +1606 -0
  23. data/lib/ojxv/schemas/crossref/crossref4.8.0.xsd +2042 -0
  24. data/lib/ojxv/schemas/crossref/crossref4.8.1.xsd +2042 -0
  25. data/lib/ojxv/schemas/crossref/crossref5.1.0.xsd +2075 -0
  26. data/lib/ojxv/schemas/crossref/crossref5.2.0.xsd +2077 -0
  27. data/lib/ojxv/schemas/crossref/crossref5.3.0.xsd +2065 -0
  28. data/lib/ojxv/schemas/crossref/crossref5.3.1.xsd +2065 -0
  29. data/lib/ojxv/schemas/crossref/crossref_citations_1.0.0.xsd +48 -0
  30. data/lib/ojxv/schemas/crossref/crossref_output3.0.0.xsd +1124 -0
  31. data/lib/ojxv/schemas/crossref/crossref_output3.0.1.xsd +1949 -0
  32. data/lib/ojxv/schemas/crossref/crossref_query_input1.0.xsd +587 -0
  33. data/lib/ojxv/schemas/crossref/crossref_query_input2.0.xsd +845 -0
  34. data/lib/ojxv/schemas/crossref/crossref_query_output1.0.xsd +499 -0
  35. data/lib/ojxv/schemas/crossref/crossref_query_output2.0.xsd +1052 -0
  36. data/lib/ojxv/schemas/crossref/crossref_query_output3.0.xsd +1169 -0
  37. data/lib/ojxv/schemas/crossref/fundref.xsd +85 -0
  38. data/lib/ojxv/schemas/crossref/fundrefoutput.xsd +38 -0
  39. data/lib/ojxv/schemas/crossref/grant_id0.0.1.xsd +1076 -0
  40. data/lib/ojxv/schemas/crossref/grant_id0.0.2.xsd +1076 -0
  41. data/lib/ojxv/schemas/crossref/grant_id0.1.0.xsd +1077 -0
  42. data/lib/ojxv/schemas/crossref/module-ali.xsd +47 -0
  43. data/lib/ojxv/schemas/crossref/oai-identifier.xsd +47 -0
  44. data/lib/ojxv/schemas/crossref/openAI.xsd +24 -0
  45. data/lib/ojxv/schemas/crossref/relations.xsd +426 -0
  46. data/lib/ojxv/schemas/crossref/rfc1807.xsd +53 -0
  47. data/lib/ojxv/schemas/crossref/standard-modules/mathml3/mathml3-common.xsd +101 -0
  48. data/lib/ojxv/schemas/crossref/standard-modules/mathml3/mathml3-content.xsd +683 -0
  49. data/lib/ojxv/schemas/crossref/standard-modules/mathml3/mathml3-presentation.xsd +2092 -0
  50. data/lib/ojxv/schemas/crossref/standard-modules/mathml3/mathml3-strict-content.xsd +186 -0
  51. data/lib/ojxv/schemas/crossref/standard-modules/mathml3/mathml3.xsd +9 -0
  52. data/lib/ojxv/schemas/crossref/standard-modules/mathml3/module-ali.xsd +47 -0
  53. data/lib/ojxv/schemas/crossref/standard-modules/module-ali.xsd +47 -0
  54. data/lib/ojxv/schemas/crossref/standard-modules/xlink.xsd +100 -0
  55. data/lib/ojxv/schemas/crossref/standard-modules/xml.xsd +287 -0
  56. data/lib/ojxv/schemas/crossref/unixref1.0.xsd +2433 -0
  57. data/lib/ojxv/schemas/crossref/unixref1.1.xsd +3240 -0
  58. data/lib/ojxv/schemas/crossref/xml.xsd +287 -0
  59. data/lib/ojxv/schemas/jats/1.0/JATS-XHTMLtablesetup1.ent +342 -0
  60. data/lib/ojxv/schemas/jats/1.0/JATS-archive-oasis-article1.dtd +734 -0
  61. data/lib/ojxv/schemas/jats/1.0/JATS-archive-oasis-custom-classes1.ent +271 -0
  62. data/lib/ojxv/schemas/jats/1.0/JATS-archive-oasis-custom-modules1.ent +221 -0
  63. data/lib/ojxv/schemas/jats/1.0/JATS-archivearticle1.dtd +695 -0
  64. data/lib/ojxv/schemas/jats/1.0/JATS-archivecustom-classes1.ent +242 -0
  65. data/lib/ojxv/schemas/jats/1.0/JATS-archivecustom-mixes1.ent +357 -0
  66. data/lib/ojxv/schemas/jats/1.0/JATS-archivecustom-models1.ent +1119 -0
  67. data/lib/ojxv/schemas/jats/1.0/JATS-archivecustom-modules1.ent +216 -0
  68. data/lib/ojxv/schemas/jats/1.0/JATS-articleauthcustom-classes1.ent +306 -0
  69. data/lib/ojxv/schemas/jats/1.0/JATS-articleauthcustom-mixes1.ent +278 -0
  70. data/lib/ojxv/schemas/jats/1.0/JATS-articleauthcustom-models1.ent +1032 -0
  71. data/lib/ojxv/schemas/jats/1.0/JATS-articleauthcustom-modules1.ent +200 -0
  72. data/lib/ojxv/schemas/jats/1.0/JATS-articleauthoring1.dtd +519 -0
  73. data/lib/ojxv/schemas/jats/1.0/JATS-articlemeta1.ent +1663 -0
  74. data/lib/ojxv/schemas/jats/1.0/JATS-backmatter1.ent +318 -0
  75. data/lib/ojxv/schemas/jats/1.0/JATS-chars1.ent +455 -0
  76. data/lib/ojxv/schemas/jats/1.0/JATS-common1.ent +3622 -0
  77. data/lib/ojxv/schemas/jats/1.0/JATS-default-classes1.ent +1049 -0
  78. data/lib/ojxv/schemas/jats/1.0/JATS-default-mixes1.ent +390 -0
  79. data/lib/ojxv/schemas/jats/1.0/JATS-display1.ent +837 -0
  80. data/lib/ojxv/schemas/jats/1.0/JATS-format1.ent +551 -0
  81. data/lib/ojxv/schemas/jats/1.0/JATS-funding1.ent +467 -0
  82. data/lib/ojxv/schemas/jats/1.0/JATS-journalmeta1.ent +371 -0
  83. data/lib/ojxv/schemas/jats/1.0/JATS-journalpub-oasis-custom-classes1.ent +291 -0
  84. data/lib/ojxv/schemas/jats/1.0/JATS-journalpub-oasis-custom-modules1.ent +222 -0
  85. data/lib/ojxv/schemas/jats/1.0/JATS-journalpubcustom-classes1.ent +258 -0
  86. data/lib/ojxv/schemas/jats/1.0/JATS-journalpubcustom-mixes1.ent +195 -0
  87. data/lib/ojxv/schemas/jats/1.0/JATS-journalpubcustom-models1.ent +752 -0
  88. data/lib/ojxv/schemas/jats/1.0/JATS-journalpubcustom-modules1.ent +201 -0
  89. data/lib/ojxv/schemas/jats/1.0/JATS-journalpublishing-oasis-article1.dtd +718 -0
  90. data/lib/ojxv/schemas/jats/1.0/JATS-journalpublishing1.dtd +691 -0
  91. data/lib/ojxv/schemas/jats/1.0/JATS-link1.ent +344 -0
  92. data/lib/ojxv/schemas/jats/1.0/JATS-list1.ent +403 -0
  93. data/lib/ojxv/schemas/jats/1.0/JATS-math1.ent +318 -0
  94. data/lib/ojxv/schemas/jats/1.0/JATS-mathmlsetup1.ent +281 -0
  95. data/lib/ojxv/schemas/jats/1.0/JATS-modules1.ent +481 -0
  96. data/lib/ojxv/schemas/jats/1.0/JATS-nlmcitation1.ent +215 -0
  97. data/lib/ojxv/schemas/jats/1.0/JATS-notat1.ent +208 -0
  98. data/lib/ojxv/schemas/jats/1.0/JATS-oasis-namespace1.ent +181 -0
  99. data/lib/ojxv/schemas/jats/1.0/JATS-oasis-tablesetup1.ent +295 -0
  100. data/lib/ojxv/schemas/jats/1.0/JATS-para1.ent +395 -0
  101. data/lib/ojxv/schemas/jats/1.0/JATS-phrase1.ent +431 -0
  102. data/lib/ojxv/schemas/jats/1.0/JATS-publishing1.dtd +691 -0
  103. data/lib/ojxv/schemas/jats/1.0/JATS-references1.ent +1001 -0
  104. data/lib/ojxv/schemas/jats/1.0/JATS-related-object1.ent +214 -0
  105. data/lib/ojxv/schemas/jats/1.0/JATS-section1.ent +238 -0
  106. data/lib/ojxv/schemas/jats/1.0/JATS-xmlspecchars1.ent +343 -0
  107. data/lib/ojxv/schemas/jats/1.0/iso8879/isobox.ent +61 -0
  108. data/lib/ojxv/schemas/jats/1.0/iso8879/isocyr1.ent +88 -0
  109. data/lib/ojxv/schemas/jats/1.0/iso8879/isocyr2.ent +47 -0
  110. data/lib/ojxv/schemas/jats/1.0/iso8879/isodia.ent +35 -0
  111. data/lib/ojxv/schemas/jats/1.0/iso8879/isolat1.ent +83 -0
  112. data/lib/ojxv/schemas/jats/1.0/iso8879/isolat2.ent +142 -0
  113. data/lib/ojxv/schemas/jats/1.0/iso8879/isonum.ent +97 -0
  114. data/lib/ojxv/schemas/jats/1.0/iso8879/isopub.ent +105 -0
  115. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isoamsa.ent +167 -0
  116. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isoamsb.ent +143 -0
  117. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isoamsc.ent +43 -0
  118. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isoamsn.ent +114 -0
  119. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isoamso.ent +73 -0
  120. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isoamsr.ent +204 -0
  121. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isogrk3.ent +64 -0
  122. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isomfrk.ent +75 -0
  123. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isomopf.ent +49 -0
  124. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isomscr.ent +75 -0
  125. data/lib/ojxv/schemas/jats/1.0/iso9573-13/isotech.ent +182 -0
  126. data/lib/ojxv/schemas/jats/1.0/mathml/mmlalias.ent +564 -0
  127. data/lib/ojxv/schemas/jats/1.0/mathml/mmlextra.ent +122 -0
  128. data/lib/ojxv/schemas/jats/1.0/mathml2-qname-1.mod +286 -0
  129. data/lib/ojxv/schemas/jats/1.0/mathml2.dtd +2206 -0
  130. data/lib/ojxv/schemas/jats/1.0/oasis-exchange.ent +399 -0
  131. data/lib/ojxv/schemas/jats/1.0/xhtml-inlstyle-1.mod +34 -0
  132. data/lib/ojxv/schemas/jats/1.0/xhtml-table-1.mod +333 -0
  133. data/lib/ojxv/schemas/jats/1.0/xmlchars/isogrk1.ent +70 -0
  134. data/lib/ojxv/schemas/jats/1.0/xmlchars/isogrk2.ent +41 -0
  135. data/lib/ojxv/schemas/jats/1.0/xmlchars/isogrk4.ent +66 -0
  136. data/lib/ojxv/schemas/jats/1.1/JATS-XHTMLtablesetup1.ent +501 -0
  137. data/lib/ojxv/schemas/jats/1.1/JATS-ali-namespace1.ent +154 -0
  138. data/lib/ojxv/schemas/jats/1.1/JATS-archive-oasis-article1-mathml3.dtd +911 -0
  139. data/lib/ojxv/schemas/jats/1.1/JATS-archive-oasis-article1.dtd +894 -0
  140. data/lib/ojxv/schemas/jats/1.1/JATS-archive-oasis-custom-classes1.ent +326 -0
  141. data/lib/ojxv/schemas/jats/1.1/JATS-archive-oasis-custom-modules1.ent +269 -0
  142. data/lib/ojxv/schemas/jats/1.1/JATS-archivearticle1-mathml3.dtd +867 -0
  143. data/lib/ojxv/schemas/jats/1.1/JATS-archivearticle1.dtd +854 -0
  144. data/lib/ojxv/schemas/jats/1.1/JATS-archivecustom-classes1.ent +291 -0
  145. data/lib/ojxv/schemas/jats/1.1/JATS-archivecustom-mixes1.ent +420 -0
  146. data/lib/ojxv/schemas/jats/1.1/JATS-archivecustom-models1.ent +1339 -0
  147. data/lib/ojxv/schemas/jats/1.1/JATS-archivecustom-modules1.ent +266 -0
  148. data/lib/ojxv/schemas/jats/1.1/JATS-articleauthcustom-classes1.ent +384 -0
  149. data/lib/ojxv/schemas/jats/1.1/JATS-articleauthcustom-mixes1.ent +321 -0
  150. data/lib/ojxv/schemas/jats/1.1/JATS-articleauthcustom-models1.ent +1269 -0
  151. data/lib/ojxv/schemas/jats/1.1/JATS-articleauthcustom-modules1.ent +249 -0
  152. data/lib/ojxv/schemas/jats/1.1/JATS-articleauthoring1-mathml3.dtd +669 -0
  153. data/lib/ojxv/schemas/jats/1.1/JATS-articleauthoring1.dtd +655 -0
  154. data/lib/ojxv/schemas/jats/1.1/JATS-articlemeta1.ent +1817 -0
  155. data/lib/ojxv/schemas/jats/1.1/JATS-backmatter1.ent +393 -0
  156. data/lib/ojxv/schemas/jats/1.1/JATS-chars1.ent +525 -0
  157. data/lib/ojxv/schemas/jats/1.1/JATS-common-atts1.ent +221 -0
  158. data/lib/ojxv/schemas/jats/1.1/JATS-common1.ent +4273 -0
  159. data/lib/ojxv/schemas/jats/1.1/JATS-default-classes1.ent +1277 -0
  160. data/lib/ojxv/schemas/jats/1.1/JATS-default-mixes1.ent +455 -0
  161. data/lib/ojxv/schemas/jats/1.1/JATS-display1.ent +1000 -0
  162. data/lib/ojxv/schemas/jats/1.1/JATS-format1.ent +858 -0
  163. data/lib/ojxv/schemas/jats/1.1/JATS-funding1.ent +547 -0
  164. data/lib/ojxv/schemas/jats/1.1/JATS-journalmeta1.ent +454 -0
  165. data/lib/ojxv/schemas/jats/1.1/JATS-journalpub-oasis-custom-classes1.ent +378 -0
  166. data/lib/ojxv/schemas/jats/1.1/JATS-journalpub-oasis-custom-modules1.ent +270 -0
  167. data/lib/ojxv/schemas/jats/1.1/JATS-journalpubcustom-classes1.ent +337 -0
  168. data/lib/ojxv/schemas/jats/1.1/JATS-journalpubcustom-mixes1.ent +258 -0
  169. data/lib/ojxv/schemas/jats/1.1/JATS-journalpubcustom-models1.ent +979 -0
  170. data/lib/ojxv/schemas/jats/1.1/JATS-journalpubcustom-modules1.ent +261 -0
  171. data/lib/ojxv/schemas/jats/1.1/JATS-journalpublishing-oasis-article1-mathml3.dtd +889 -0
  172. data/lib/ojxv/schemas/jats/1.1/JATS-journalpublishing-oasis-article1.dtd +872 -0
  173. data/lib/ojxv/schemas/jats/1.1/JATS-journalpublishing1-mathml3.dtd +861 -0
  174. data/lib/ojxv/schemas/jats/1.1/JATS-journalpublishing1.dtd +845 -0
  175. data/lib/ojxv/schemas/jats/1.1/JATS-link1.ent +416 -0
  176. data/lib/ojxv/schemas/jats/1.1/JATS-list1.ent +494 -0
  177. data/lib/ojxv/schemas/jats/1.1/JATS-math1.ent +402 -0
  178. data/lib/ojxv/schemas/jats/1.1/JATS-mathml3-mathmlsetup1.ent +350 -0
  179. data/lib/ojxv/schemas/jats/1.1/JATS-mathml3-modules1.ent +190 -0
  180. data/lib/ojxv/schemas/jats/1.1/JATS-mathmlsetup1.ent +348 -0
  181. data/lib/ojxv/schemas/jats/1.1/JATS-modules1.ent +584 -0
  182. data/lib/ojxv/schemas/jats/1.1/JATS-nlmcitation1.ent +285 -0
  183. data/lib/ojxv/schemas/jats/1.1/JATS-notat1.ent +269 -0
  184. data/lib/ojxv/schemas/jats/1.1/JATS-oasis-namespace1.ent +223 -0
  185. data/lib/ojxv/schemas/jats/1.1/JATS-oasis-tablesetup1.ent +409 -0
  186. data/lib/ojxv/schemas/jats/1.1/JATS-para1.ent +481 -0
  187. data/lib/ojxv/schemas/jats/1.1/JATS-phrase1.ent +502 -0
  188. data/lib/ojxv/schemas/jats/1.1/JATS-publishing1.dtd +845 -0
  189. data/lib/ojxv/schemas/jats/1.1/JATS-references1.ent +1205 -0
  190. data/lib/ojxv/schemas/jats/1.1/JATS-related-object1.ent +283 -0
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  192. data/lib/ojxv/schemas/jats/1.1/JATS-xmlspecchars1.ent +389 -0
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  194. data/lib/ojxv/schemas/jats/1.1/iso8879/isocyr1.ent +88 -0
  195. data/lib/ojxv/schemas/jats/1.1/iso8879/isocyr2.ent +47 -0
  196. data/lib/ojxv/schemas/jats/1.1/iso8879/isodia.ent +35 -0
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  210. data/lib/ojxv/schemas/jats/1.1/iso9573-13/isomscr.ent +75 -0
  211. data/lib/ojxv/schemas/jats/1.1/iso9573-13/isotech.ent +182 -0
  212. data/lib/ojxv/schemas/jats/1.1/mathml/mmlalias.ent +564 -0
  213. data/lib/ojxv/schemas/jats/1.1/mathml/mmlextra.ent +122 -0
  214. data/lib/ojxv/schemas/jats/1.1/mathml2-qname-1.mod +286 -0
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  216. data/lib/ojxv/schemas/jats/1.1/mathml3-qname1.mod +294 -0
  217. data/lib/ojxv/schemas/jats/1.1/mathml3.dtd +1682 -0
  218. data/lib/ojxv/schemas/jats/1.1/oasis-exchange.ent +449 -0
  219. data/lib/ojxv/schemas/jats/1.1/xhtml-inlstyle-1.mod +34 -0
  220. data/lib/ojxv/schemas/jats/1.1/xhtml-table-1.mod +333 -0
  221. data/lib/ojxv/schemas/jats/1.1/xmlchars/isogrk1.ent +70 -0
  222. data/lib/ojxv/schemas/jats/1.1/xmlchars/isogrk2.ent +41 -0
  223. data/lib/ojxv/schemas/jats/1.1/xmlchars/isogrk4.ent +66 -0
  224. data/lib/ojxv/schemas/jats/1.1d1/JATS-XHTMLtablesetup1.ent +421 -0
  225. data/lib/ojxv/schemas/jats/1.1d1/JATS-archive-oasis-article1-mathml3.dtd +829 -0
  226. data/lib/ojxv/schemas/jats/1.1d1/JATS-archive-oasis-article1.dtd +813 -0
  227. data/lib/ojxv/schemas/jats/1.1d1/JATS-archive-oasis-custom-classes1.ent +277 -0
  228. data/lib/ojxv/schemas/jats/1.1d1/JATS-archive-oasis-custom-modules1.ent +221 -0
  229. data/lib/ojxv/schemas/jats/1.1d1/JATS-archivearticle1-mathml3.dtd +791 -0
  230. data/lib/ojxv/schemas/jats/1.1d1/JATS-archivearticle1.dtd +775 -0
  231. data/lib/ojxv/schemas/jats/1.1d1/JATS-archivecustom-classes1.ent +242 -0
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  911. data/lib/ojxv/version.rb +1 -1
  912. data/lib/ojxv.rb +7 -0
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@@ -0,0 +1,1233 @@
1
+ <!-- ============================================================= -->
2
+ <!-- MODULE: Article Authoring DTD Over-ride Content and -->
3
+ <!-- Attribute Module -->
4
+ <!-- VERSION: ANSI/NISO JATS Version 1.0 (Z39.96-2012) -->
5
+ <!-- DATE: September 2014 -->
6
+ <!-- -->
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+ <!-- ============================================================= -->
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+
9
+ <!-- ============================================================= -->
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+ <!-- PUBLIC DOCUMENT TYPE DEFINITION -->
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+ <!-- TYPICAL INVOCATION -->
12
+ <!--
13
+ "-//NLM//DTD JATS (Z39.96) Article Authoring DTD Over-ride Content and Attribute Module v3.0 20080202//EN"
14
+ Delivered as file "JATS-articleauthcustom-models1.ent" -->
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+ <!-- ============================================================= -->
16
+
17
+
18
+ <!-- ============================================================= -->
19
+ <!-- SYSTEM: Article Authoring DTD of the JATS DTD Suite -->
20
+ <!-- -->
21
+ <!-- PURPOSE: To declare the Parameter Entities (PEs) used to -->
22
+ <!-- over-ride the content models, parts of content -->
23
+ <!-- models, or attribute lists of the JATS DTD Suite -->
24
+ <!-- -->
25
+ <!-- Or-groups within models should use mixes or -->
26
+ <!-- classes rather than name elements directly. -->
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+ <!-- -->
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+ <!-- Note: Since PEs must be declared before they -->
29
+ <!-- are used, this module must be called before the -->
30
+ <!-- content modules that declare elements. -->
31
+ <!-- -->
32
+ <!-- TAG SET SPONSOR -->
33
+ <!-- National Center for Biotechnology -->
34
+ <!-- Information (NCBI) -->
35
+ <!-- National Library of Medicine (NLM) -->
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+ <!-- -->
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+ <!-- CREATED FOR: -->
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+ <!-- This DTD was created from the JATS DTD Suite. -->
39
+ <!-- Authors, digital archives, and publishers may -->
40
+ <!-- use the DTD as is for markup of journal -->
41
+ <!-- literature or related material for archiving -->
42
+ <!-- and transferring such material between archives -->
43
+ <!-- or create a custom XML DTD from the Suite for -->
44
+ <!-- these purposes. -->
45
+ <!-- -->
46
+ <!-- This DTD is in the public domain. An organization -->
47
+ <!-- that wishes to create its own DTD from the suite -->
48
+ <!-- may do so without permission from NLM. -->
49
+ <!-- -->
50
+ <!-- The suite has been set up to be extended using a -->
51
+ <!-- new DTD file and a new DTD-specific customization -->
52
+ <!-- module to redefine the many Parameter Entities. -->
53
+ <!-- Do not modify the suite directly or redistribute -->
54
+ <!-- modified versions of the suite. -->
55
+ <!-- -->
56
+ <!-- In the interest of maintaining consistency and -->
57
+ <!-- clarity for potential users, NLM requests: -->
58
+ <!-- -->
59
+ <!-- 1. If you create a DTD from the JATS DTD Suite -->
60
+ <!-- and intend to stay compatible with the suite, -->
61
+ <!-- then please include the following statement -->
62
+ <!-- as a comment in all of your DTD modules: -->
63
+ <!-- "Created from, and fully compatible with, -->
64
+ <!-- the ANSI/NISO Z39.96 Journal Article Tag -->
65
+ <!-- Suite (JATS)." -->
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+ <!-- -->
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+ <!-- 2. If you alter one or more modules of the suite, -->
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+ <!-- then please rename your version and all its -->
69
+ <!-- modules to avoid any confusion with the -->
70
+ <!-- original suite. Also, please include the -->
71
+ <!-- following statement as a comment in all your -->
72
+ <!-- DTD modules: -->
73
+ <!-- "Based in part on, but not fully compatible -->
74
+ <!-- with, the ANSI/NISO Z39.96 Journal Article -->
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+ <!-- Tag Suite (JATS)." -->
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+ <!-- -->
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+ <!-- ORIGINAL CREATION DATE: -->
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+ <!-- June 2005 -->
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+ <!-- -->
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+ <!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 -->
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+ <!-- Working Group. Mulberry Technologies was -->
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+ <!-- supported by National Center for Biotechnology -->
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+ <!-- Information (NCBI), a center of the US National -->
84
+ <!-- Library of Medicine (NLM). -->
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+ <!-- -->
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+ <!-- The Article Authoring DTD is built from the -->
87
+ <!-- Archiving and Interchange DTD Suite. -->
88
+ <!-- -->
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+ <!-- Suggestions for refinements and enhancements to -->
90
+ <!-- this DTD should be sent in email to: -->
91
+ <!-- jats@ncbi.nlm.nih.gov -->
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+ <!-- ============================================================= -->
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+
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+
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+ <!-- ============================================================= -->
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+ <!-- DTD VERSION/CHANGE HISTORY -->
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+ <!-- ============================================================= -->
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+ <!--
99
+
100
+ Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
101
+
102
+ =============================================================
103
+ JATS Version 1.1d2 (DAL/BTU) v1.1d2 (2014-09-30)
104
+
105
+ NISO JATS is a continuing maintenance NISO Standard, which
106
+ requires voting by the NISO membership to be changed. This
107
+ Committee Draft 1.1d2 will be sent to the NISO voting
108
+ membership, to become (if approved) NISO JATS 1.1.
109
+
110
+ This catalog represents an interim version of the
111
+ non-normative JATS DTD Suite, as an indication to JATS users
112
+ the decisions that have been made by the JATS Standing
113
+ Committee.
114
+
115
+ 33. COLLAB ATTRIBUTES - Redefined to get rid of @symbol
116
+
117
+ 32. UNUSED PARAMETER ENTITIES DELETED
118
+ - aff-model
119
+ - fig-group-model
120
+
121
+ 31. VERSION ELEMENTS EDITION
122
+ The new element <version> uses the PE %-just-rendition,
123
+ but Authoring has set that PE to null, so the <version>
124
+ element added <sup> and <sub> to be like the content
125
+ of <edition>.
126
+
127
+ 30. VALUE LIST FOR PERSON-GROUP-TYPE
128
+ Added "curator" to the list of person-group role values.
129
+
130
+ 29. NAME OF JATS COMMON ATTRIBUTES
131
+ Common attlists renamed with "jats-" at the front.
132
+
133
+ 28. TITLE FOR LIST ITEMS
134
+ Added an optional <title> to the beginning of each <list-item>.
135
+
136
+ 27. EDITION ELEMENTS - Added <sub> and <sup> to the model of
137
+ edition. These were needed now that the "Edition" element
138
+ has been renamed and repurposed as "Edition Statement".
139
+
140
+ 26. STATEMENT - Added new statement.class inside the model
141
+ for <statement>, so that statements can be recursive.
142
+
143
+ 25. JATS became version "1.1d2" and "v1.1d2 20140930//EN"
144
+
145
+ 24. REFERENCE TYPES
146
+ - Added "collab"
147
+
148
+ 23. CONFERENCE LOCATION ELEMENTS and PUBLISHER-LOC ELEMENTS
149
+ - Added 3 new OPTIONAL elements: <city>, <state>,
150
+ and <postal-code>
151
+
152
+ 22. ADDRESS MODEL
153
+ - Added 3 new OPTIONAL elements: <city>, <state>,
154
+ and <postal-code>
155
+
156
+ =============================================================
157
+ NISO JATS Version 1.1d1 (DAL/BTU) v1.1 (2013-11-15)
158
+
159
+ ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1)
160
+
161
+ NISO JATS Standing Committee met and answered the requests and
162
+ suggestions from the NISO request forms.
163
+ Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs,
164
+ RNGs and supporting documentation are available at
165
+ http://jats.nlm.nih.gov/1.1/
166
+
167
+ 21.GLOBAL ATTRIBUTES - Added the new parameter entity
168
+ "%jats-common-atts;
169
+ to every element in this module. This PE adds (for now) the
170
+ @id attribute and the @xml:base attribute to every element,
171
+ whether metadata or narrative.
172
+ Since the @id in this parameter entity is optional, a second
173
+ parameter entity jats-common-atts-id-required was also added.
174
+ The two are kept in sync with the jats-base-atts parameter
175
+ entity.
176
+
177
+ 20. ON-BEHALF-OF NEW CONTENT
178
+ Added <xref>, <fn>, and <target> (the simple links) to
179
+ <on-behalf-of>.
180
+
181
+ 19. NEW TOGGLE ATTRIBUTE
182
+ @toggle added to the attributes for <underline> through
183
+ %underline-atts;.
184
+
185
+ 18. NEW ELEMENT <era>
186
+ Added to the model of <date>, optional following year.
187
+
188
+ 17. XML Base
189
+ Added the attribute @xml:base to the Global (common)
190
+ attributes used on all elements.
191
+
192
+ 16. INSTITUTION WRAP ADDED
193
+ Added the elements <institution-wrap> to the following elements
194
+ through the institution-wrap.class:
195
+ - <address>
196
+ - <conf-sponsor>
197
+ - <funding-source>
198
+ - <publisher-name>
199
+ - <std-organization>
200
+
201
+ 15. ABSTRACTS AND KEYWORDS
202
+ The 2 new classes described in #14 were used to add
203
+ <abstract> and <keyword> to many elements in the Archiving
204
+ and Publishing models. Since these were NOT to be added to
205
+ Authoring, some elements that did not need to be
206
+ redefined before, now need to be redefined. No content
207
+ model changes were made by these redefinitions.
208
+ - disp-formula-group
209
+ - statement
210
+
211
+ 14. ABSTRACTS AND KEYWORDS
212
+ Changed "abstract*" to "(%abstract.class;)*"
213
+ and "kwd-group*" to "(%kwd-group.class;)*" since those
214
+ classes now exist. Elements should have a limited number of
215
+ ways to be invoked.
216
+ - article-meta (through %article-meta-model;)
217
+
218
+ =============================================================
219
+ NISO JATS Version 1.0 (DAL/BTU) v1.0 (2012-xx-xx)
220
+
221
+ ANSI/NISO Z39.96-2012 (Version 1.0)
222
+
223
+ Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs,
224
+ RNGs and supporting documentation are available at
225
+ http://jats.nlm.nih.gov/1.0/
226
+
227
+ 13. RELATED OBJECT - Added <related-object> everywhere
228
+ <related-article> was used, including inside
229
+ <article-meta> using article-meta-model.
230
+
231
+ 12. CONTRIBUTOR MODEL - Added "contrib-id.class" to the beginning
232
+ at the <contrib> model, to hold identifiers for people,
233
+ such as publishers-specific IDs, ORCIDs, and JST and NII
234
+ identifiers.
235
+
236
+ 11. STANDARDS ORGANIZATION - Added std-organization-elements
237
+ to reduce what was allowed in the names of standards bodies.
238
+
239
+ 10. PARAGRPH PARAMETER ENTITY SYNTAX CHANGE (no models changed)
240
+ Fixed content models that were stated as "p*", "p+", and
241
+ "sec*" to use the %just-para.class; and %sec.class; classes.
242
+ Element models that were changed include:
243
+ - abstract
244
+ - ack
245
+ - app-group
246
+ - disp-quote-model
247
+ - glossary
248
+ - ref-list
249
+
250
+ 9. Updated the public identifier to "v1.0 20120330//EN",
251
+ modified the formal public identifier to include "JATS (Z39.96)",
252
+ and the filename as delivered to include "JATS" and the
253
+ new version number "1".
254
+
255
+ =============================================================
256
+ Version 0.4 (DAL/BTU) v0.4 (2011-01-31)
257
+
258
+ This Tag Set is in the process of becoming a NISO standard.
259
+ The version numbers are starting over from 0.4", as a Trial
260
+ Use Draft, to be made into "Version 1.0" when the Tag Suite
261
+ becomes a NISO standard. Thus, the version number that would
262
+ have been "NLM Version 3.1 Draft" has become NISO JATS
263
+ "Version 0.4".
264
+
265
+ Details on NISO Trial Use Draft Version 0.4 are available at
266
+ http://jats.nlm.nih.gov/JATS-0.4.
267
+
268
+ 8. Updated the DTD-version attribute to "0.4"
269
+
270
+ 7. Updated the public identifier to "v0.4 20110131",
271
+ modified the formal public identifier to include "JATS (Z39.96)",
272
+ and the filename as delivered to include "JATS" and the
273
+ new version number "0".
274
+ http://jats.nlm.nih.gov/0.4.
275
+
276
+ 6. KEYWORD GROUP - Made <kwd-group> repeatable inside
277
+ <article-meta> by modifying %article-meta-model;
278
+
279
+ 5. MEDIA - In 3.0 <graphic> and <media> used the same model,
280
+ defined by %graphic-model;. In 0.4, %media-model; was added to
281
+ separate the redefinition possibilities. Since Authoring had
282
+ redefined %graphic-model;, the same redefinition was necessary
283
+ for <media> through %media-model;.
284
+
285
+ 4. INITIALS - Removed the attribute over-ride for <surname> and
286
+ <given-names> to allow the use of @initials.
287
+
288
+ 3. PERSON-GROUP - Became a mixed-content model, so the parameter
289
+ entity %person-group-model: was changed to
290
+ %person-group-elements;, which will be mixed with #PCDATA
291
+ as defined in references.ent. The PE person-group-model has
292
+ been retained in references.ent for compatibility, but has been
293
+ set to the mixed model using person-group-elements.
294
+
295
+ 2. @SPECIFIC-USE and @XML:LANG - Added the @specific-use
296
+ to the following over-rides:
297
+ - fn through fn-atts (@specific-use only; @xml:lang already)
298
+ - inline-graphic-atts through inline-graphic-atts (both)
299
+ - list through list-atts (@xml:lang only; @specific-use already)
300
+ - person-group through person-group-atts (both
301
+ - underline through underline-atts (both)
302
+
303
+ =============================================================
304
+ Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
305
+
306
+ Version 3.0 is the first non-backward-compatible release.
307
+ In addition to the usual incremental changes, some
308
+ elements and attributes have been renamed and/or remodeled
309
+ to better meet user needs and to increase tag set consistency.
310
+ All module change histories are available through the Tag Suite
311
+ web site at http://dtd.nlm.nih.gov.
312
+
313
+ Details on version 3.0 are available at
314
+ http://dtd.nlm.nih.gov/3.0.
315
+
316
+ 1. Updated public identifier to "v3.0 20080202//EN" -->
317
+
318
+ <!-- ============================================================= -->
319
+ <!-- INLINE MIXES TO OVER-RIDE CONTENT MODELS -->
320
+ <!-- (ELEMENTS TO BE ADDED TO #PCDATA IN MODELS)-->
321
+ <!-- ============================================================= -->
322
+
323
+
324
+ <!-- ADDRESS LINE ELEMENTS -->
325
+ <!-- Elements for use in the <addr-line> element-->
326
+ <!ENTITY % addr-line-elements
327
+ "%rendition-plus; | %address-line.class;" >
328
+
329
+
330
+ <!-- AFFILIATION ELEMENTS -->
331
+ <!-- Elements for use in the <aff> element
332
+ Removed <label> -->
333
+ <!ENTITY % aff-elements "| %address.class; | %address-link.class; |
334
+ %break.class; | %emphasis.class; |
335
+ %simple-link.class; | %subsup.class;" >
336
+
337
+
338
+ <!-- AWARD-ID ELEMENTS -->
339
+ <!-- The elements that can be included along with
340
+ data characters inside the content model of
341
+ the <award-id> -->
342
+ <!ENTITY % award-id-elements
343
+ "" >
344
+
345
+
346
+ <!-- CHEMICAL STRUCTURE ELEMENTS -->
347
+ <!-- Those elements that may mix with the data
348
+ characters inside a Chemical Structure
349
+ <chem-struct> -->
350
+ <!ENTITY % chem-struct-elements
351
+ "| %access.class; | %address-link.class; |
352
+ %break.class; | %emphasis.class; |
353
+ %id.class; | %list.class; |
354
+ %simple-display.class; |
355
+ %simple-link.class; | %subsup.class; " >
356
+
357
+
358
+ <!-- CITATION ELEMENTS -->
359
+ <!-- Content for both types of citation. These
360
+ elements may be mixed with #PCDATA in the
361
+ <mixed-citation> element (in which all
362
+ punctuation and spacing are left intact), and
363
+ they also constitute the choices that can be
364
+ used to form the all-element-content of the
365
+ <element-citation> element (in which
366
+ punctuation and spacing are removed).
367
+ Design Note: All inline mixes begin with an
368
+ OR bar. -->
369
+ <!ENTITY % citation-elements
370
+ "%emphasis.class; | %inline-display.class; |
371
+ %inline-math.class; |
372
+ %phrase.class; | %references.class; |
373
+ %subsup.class;" >
374
+
375
+
376
+ <!-- COLLABORATIVE (GROUP) AUTHOR ELEMENTS -->
377
+ <!-- Elements for use in the <collab> element
378
+ Design Note: All inline mixes begin with an
379
+ OR bar, but since %rendition-plus; is an
380
+ inline mix, the OR bar is already there. -->
381
+ <!ENTITY % collab-elements
382
+ "%rendition-plus; | %address.class; |
383
+ %contrib-info.class;" >
384
+
385
+
386
+ <!-- COMMENT ELEMENTS -->
387
+ <!-- The elements that can be included along with
388
+ data characters inside the content model of
389
+ the Comment in a Citation <comment> element.
390
+ Design Note: All inline mixes begin with an
391
+ OR bar, but since %simple-phrase; is an
392
+ inline mix, the OR bar is already there. -->
393
+ <!ENTITY % comment-elements
394
+ "| %address-link.class; |
395
+ %article-link.class; | %emphasis.class; |
396
+ %inline-display.class; |
397
+ %inline-math.class; |
398
+ %phrase.class; |
399
+ %subsup.class;" >
400
+
401
+
402
+ <!-- CONFERENCE ACRONYM ELEMENTS -->
403
+ <!-- The elements that can be included along with
404
+ data characters inside the content model of
405
+ the conference acronym.
406
+ Design Note: All inline mixes begin with an
407
+ OR bar, but since %simple-text; is an online
408
+ mix, the OR bar is already there. -->
409
+ <!ENTITY % conf-acronym-elements
410
+ "" >
411
+
412
+
413
+ <!-- CONFERENCE LOCATION ELEMENTS -->
414
+ <!-- Elements for use in the <conf-loc> element
415
+ Removed %simple-text; -->
416
+ <!ENTITY % conf-loc-elements
417
+ "| %address.class;" >
418
+
419
+
420
+ <!-- CONFERENCE NAME ELEMENTS -->
421
+ <!-- Elements for use in the <conf-name> element.
422
+ Removed %simple-text; -->
423
+ <!ENTITY % conf-name-elements
424
+ "" >
425
+
426
+
427
+ <!-- CONFERENCE NUMBER ELEMENTS -->
428
+ <!-- The elements that can be included along with
429
+ data characters inside the content model of
430
+ the conference number.
431
+ Design Note: All inline mixes begin with an
432
+ OR bar, but since %simple-text; is an inline
433
+ mix, the OR bar is already there. -->
434
+ <!ENTITY % conf-num-elements
435
+ "" >
436
+
437
+
438
+ <!-- CONFERENCE SPONSOR ELEMENTS -->
439
+ <!-- The elements that can be included along with
440
+ data characters inside the content model of
441
+ the conference sponsor. -->
442
+ <!ENTITY % conf-sponsor-elements
443
+ "| %institution-wrap.class;" >
444
+
445
+
446
+ <!-- CORRESPONDENCE INFORMATION ELEMENTS -->
447
+ <!-- The elements that can be included along with
448
+ data characters inside the content model of
449
+ the correspondence information. -->
450
+ <!ENTITY % corresp-elements
451
+ "| %address.class; | %address-link.class; |
452
+ %emphasis.class; | %subsup.class;" >
453
+
454
+
455
+ <!-- DEGREE(S) ELEMENTS -->
456
+ <!-- The elements that can be included along with
457
+ data characters inside the content model of
458
+ <degrees> -->
459
+ <!ENTITY % degrees-elements
460
+ "" >
461
+
462
+
463
+ <!-- FORMULA, DISPLAY ELEMENTS -->
464
+ <!-- Elements for use mixed with #PCDATA within
465
+ the <disp-formula> element -->
466
+ <!ENTITY % disp-formula-elements
467
+ "| %access.class; | %address-link.class; |
468
+ %break.class; | %emphasis.class; |
469
+ %display-back-matter.class; |
470
+ %inline-display.class; |
471
+ %inline-math.class; | %label.class; |
472
+ %math.class; | %simple-display.class; |
473
+ %subsup.class;" >
474
+
475
+
476
+ <!-- EDITION ELEMENTS -->
477
+ <!-- The elements that can be included along with
478
+ data characters inside the content model of
479
+ <edition> -->
480
+ <!ENTITY % edition-elements
481
+ "| %subsup.class;" >
482
+
483
+
484
+ <!-- FAX NUMBER ELEMENTS -->
485
+ <!-- The elements that can be included along with
486
+ data characters inside the content model of
487
+ a <fax> -->
488
+ <!ENTITY % fax-elements "" >
489
+
490
+
491
+ <!-- FUNDING-SOURCE ELEMENTS -->
492
+ <!-- The elements that can be included along with
493
+ data characters inside the content model of
494
+ the <funding-source> -->
495
+ <!ENTITY % funding-source-elements
496
+ "| %institution-wrap.class;" >
497
+
498
+
499
+ <!-- GIVEN (FIRST) NAMES ELEMENTS -->
500
+ <!-- The elements that can be included along with
501
+ data characters inside the content model of
502
+ a <given-names> -->
503
+ <!ENTITY % given-names-elements
504
+ "" >
505
+
506
+
507
+ <!-- INSTITUTION NAME ELEMENTS -->
508
+ <!-- Elements for use in the <institution>
509
+ element -->
510
+ <!ENTITY % institution-elements
511
+ "| %subsup.class;" >
512
+
513
+
514
+ <!-- ISSUE TITLE ELEMENTS -->
515
+ <!-- Elements for use with data characters inside
516
+ the model for the <issue> element -->
517
+ <!ENTITY % issue-elements
518
+ "" >
519
+
520
+
521
+ <!-- KEYWORD CONTENT ELEMENTS -->
522
+ <!-- The elements that can be included along with
523
+ data characters inside the content model of
524
+ a keyword <kwd>. -->
525
+ <!ENTITY % kwd-elements "| %emphasis.class; | %phrase.class; |
526
+ %subsup.class;" >
527
+
528
+
529
+ <!-- LABEL ELEMENTS -->
530
+ <!-- The elements that can be included along with
531
+ data characters inside the content model of
532
+ the <label> element -->
533
+ <!ENTITY % label-elements
534
+ "" >
535
+
536
+
537
+ <!-- PATENT NUMBER ELEMENTS -->
538
+ <!-- The elements that can be included along with
539
+ data characters inside the content model of
540
+ <patent> -->
541
+ <!ENTITY % patent-elements
542
+ "" >
543
+
544
+
545
+ <!-- PERSON GROUP MODEL -->
546
+ <!-- Content model for the <person-group> element
547
+ -->
548
+ <!ENTITY % person-group-elements
549
+ "| %name.class; | %person-group-info.class; |
550
+ %string-name.class;" >
551
+
552
+
553
+ <!-- PHONE NUMBER ELEMENTS -->
554
+ <!-- The elements that can be included along with
555
+ data characters inside the content model of
556
+ a <phone number> -->
557
+ <!ENTITY % phone-elements
558
+ "" >
559
+
560
+
561
+ <!-- PREFIX ELEMENTS -->
562
+ <!-- The elements that can be included along with
563
+ data characters inside the content model of
564
+ a <prefix> -->
565
+ <!ENTITY % prefix-elements
566
+ "" >
567
+
568
+
569
+ <!-- PREFORMATTED TEXT ELEMENTS -->
570
+ <!-- Elements that may be used, along with data
571
+ characters, inside the content model for the
572
+ <preformat> element, in which white space,
573
+ such as tabs, line feeds, and spaces will
574
+ be preserved -->
575
+ <!ENTITY % preformat-elements
576
+ "| %access.class; | %address-link.class; |
577
+ %display-back-matter.class; |
578
+ %emphasis.class; | %phrase.class; |
579
+ %subsup.class;" >
580
+
581
+
582
+ <!-- PRODUCT ELEMENTS -->
583
+ <!-- The elements that can be included along with
584
+ data characters inside the content model of
585
+ the <product> element -->
586
+ <!ENTITY % product-elements
587
+ "| %article-link.class; | %emphasis.class; |
588
+ %inline-display.class; |
589
+ %inline-math.class; | %phrase.class; |
590
+ %price.class; |
591
+ %references.class; | %simple-link.class; |
592
+ %subsup.class;" >
593
+
594
+
595
+ <!-- PUBLISHER'S LOCATION ELEMENTS -->
596
+ <!-- Elements for use in the Publisher Location
597
+ <publisher-loc> element -->
598
+ <!ENTITY % publisher-loc-elements
599
+ "| %address.class;" >
600
+
601
+
602
+ <!-- PUBLISHER'S NAME ELEMENTS -->
603
+ <!-- The elements that can be included along with
604
+ data characters inside the content model of
605
+ a <publisher-name> -->
606
+ <!ENTITY % publisher-name-elements
607
+ "| %institution-wrap.class;" >
608
+
609
+
610
+ <!-- ROLE ELEMENTS -->
611
+ <!-- The elements that can be included along with
612
+ data characters inside the content model of
613
+ a <role>
614
+ Design Note: All inline mixes begin with an
615
+ OR bar; since %rendition-plus; is an
616
+ inline mix, the OR bar is already there. -->
617
+ <!ENTITY % role-elements
618
+ "" >
619
+
620
+
621
+ <!-- SUFFIX ELEMENTS -->
622
+ <!-- The elements that can be included along with
623
+ data characters inside the content model of
624
+ a <suffix> -->
625
+ <!ENTITY % suffix-elements
626
+ "" >
627
+
628
+
629
+ <!-- SOURCE ELEMENTS -->
630
+ <!-- The elements that can be included along with
631
+ data characters inside the content model of
632
+ a <source>. -->
633
+ <!ENTITY % source-elements
634
+ "| %emphasis.class; | %address-link.class; |
635
+ %subsup.class;" >
636
+
637
+
638
+ <!-- STANDARDS ORGANIZATION ELEMENTS -->
639
+ <!-- The elements that can be included along with
640
+ data characters inside the content model of
641
+ <std-organization>.
642
+ Removed emphasis.class. -->
643
+ <!ENTITY % std-organization-elements
644
+ "| %institution-wrap.class; | %subsup.class;">
645
+
646
+
647
+ <!-- SURNAME ELEMENTS -->
648
+ <!-- The elements that can be included along with
649
+ data characters inside the content model of
650
+ a <surname> -->
651
+ <!ENTITY % surname-elements
652
+ "" >
653
+
654
+
655
+ <!-- DEFINITION LIST: TERM ELEMENTS -->
656
+ <!-- The elements that can be included along with
657
+ data characters inside the content model of
658
+ a <term>.
659
+ Design Note: All inline mixes begin with an
660
+ OR bar, but since %simple-phrase; is an
661
+ inline mix, the OR bar is already there. -->
662
+ <!ENTITY % term-elements
663
+ "| %address-link.class; |
664
+ %article-link.class; | %emphasis.class; |
665
+ %inline-display.class; |
666
+ %inline-math.class; | %phrase.class; |
667
+ %simple-link.class; | %subsup.class;" >
668
+
669
+
670
+ <!-- URI ELEMENTS -->
671
+ <!-- The elements that can be included along with
672
+ data characters inside the content model of
673
+ a <uri> -->
674
+ <!ENTITY % uri-elements
675
+ "" >
676
+
677
+
678
+ <!-- VERSION ELEMENTS -->
679
+ <!-- The elements that can be included along with
680
+ data characters inside the content model of
681
+ <version> -->
682
+ <!ENTITY % version-elements
683
+ "| %subsup.class;" >
684
+
685
+
686
+
687
+ <!-- VOLUME NUMBER ELEMENTS -->
688
+ <!-- The elements that can be included along with
689
+ data characters inside the content model of
690
+ a <volume> -->
691
+ <!ENTITY % volume-elements
692
+ "" >
693
+
694
+
695
+ <!-- ============================================================= -->
696
+ <!-- OVER-RIDES USED IN SHARED CONTENT MODELS -->
697
+ <!-- ============================================================= -->
698
+
699
+
700
+ <!-- DISPLAY ELEMENT BACK MATTER SEQUENCE -->
701
+ <!-- Miscellaneous stuff at the end of a display
702
+ element such as a figure or a boxed text
703
+ element such as a sidebar -->
704
+ <!ENTITY % display-back-matter
705
+ "attrib?, permissions?" >
706
+
707
+
708
+ <!-- ============================================================= -->
709
+ <!-- OVER-RIDES OF SHARED CONTENT MODELS (FULL) -->
710
+ <!-- ============================================================= -->
711
+
712
+
713
+ <!-- CONTENT MODEL FOR A STRUCTURAL SECTION -->
714
+ <!-- The model for a section that requires that a
715
+ section title be present, used for elements
716
+ such as Section and Appendix. -->
717
+ <!ENTITY % sec-model "(title, (%para-level;)*, (%sec-level;)* )" >
718
+
719
+
720
+ <!-- CONTENT MODEL FOR AN UNTITLED SECTION -->
721
+ <!-- The model for a section-like structure that
722
+ may or may not have an initial title -->
723
+ <!ENTITY % sec-opt-title-model
724
+ "(title?, (%para-level;)*, (%sec-level;)* )" >
725
+
726
+
727
+ <!-- ============================================================= -->
728
+ <!-- OVER-RIDES OF CONTENT MODELS (FULL MODELS) -->
729
+ <!-- ============================================================= -->
730
+
731
+
732
+ <!-- ABSTRACT MODEL -->
733
+ <!-- Abstracts may contain one or more paragraphs
734
+ (as a typical abstract does) or titled
735
+ sections, as is done in many physics
736
+ articles. -->
737
+ <!ENTITY % abstract-model
738
+ "(title?, (%just-para.class;)*, %sec.class;*)"
739
+ >
740
+
741
+
742
+ <!-- ACKNOWLEDGMENTS MODEL -->
743
+ <!-- Content model for the <ack> element
744
+ Deleted optional sections and closing
745
+ reference list -->
746
+ <!ENTITY % ack-model "(title?, (%just-para.class;)*)" >
747
+
748
+
749
+ <!-- ANONYMOUS MODEL -->
750
+ <!-- Content model for the element <anonymous>.
751
+ When present, it is used to generate the text
752
+ "anonymous" or "anon.", etc. -->
753
+ <!ENTITY % anonymous-model
754
+ "EMPTY" >
755
+
756
+
757
+ <!-- ADDRESS MODEL -->
758
+ <!-- Content model for the <address> element -->
759
+ <!ENTITY % address-model
760
+ "((%institution-wrap.class;)*, addr-line*,
761
+ city?, state?, postal-code?,
762
+ country, phone*, fax*, email*, ext-link*,
763
+ uri*)" >
764
+
765
+
766
+ <!-- APPENDIX GROUP MODEL -->
767
+ <!-- Content model for the <app-group> element -->
768
+ <!ENTITY % app-group-model
769
+ "(title?, (%just-para.class;)*,
770
+ (%app.class;)* )" >
771
+
772
+
773
+ <!-- ARTICLE METADATA MODEL -->
774
+ <!-- Full content model for the metadata that is
775
+ specific to the article. -->
776
+ <!ENTITY % article-meta-model
777
+ "(title-group, contrib-group,
778
+ (product | supplementary-material)*,
779
+ permissions?, self-uri*,
780
+ (%related-article.class;)*,
781
+ (%abstract.class;)+, (%kwd-group.class;)*,
782
+ funding-group*,
783
+ conference*)" >
784
+
785
+
786
+ <!-- BOXED TEXT MODEL -->
787
+ <!-- Complete content model for the boxed text
788
+ element which is used for sidebars,
789
+ marginalia, and other text that is outside
790
+ the narrative flow. -->
791
+ <!ENTITY % boxed-text-model
792
+ "((%id.class;)*, caption?, (%para-level;)*,
793
+ (%sec-level;)*, %display-back-matter; )" >
794
+
795
+
796
+ <!-- CHEMICAL STRUCTURE WRAPPER MODEL -->
797
+ <!-- Content model for the Chemical Structure
798
+ Wrapper <chem-struct-wrap> element -->
799
+ <!ENTITY % chem-struct-wrap-model
800
+ "((%id.class;)*, (%caption.class;)?,
801
+ (%access.class;)*,
802
+ (%inside-chem-struct-wrap.class;)+,
803
+ %display-back-matter;)" >
804
+
805
+
806
+ <!-- CONFERENCE MODEL -->
807
+ <!-- The element components that describe
808
+ of a conference -->
809
+ <!ENTITY % conference-model
810
+ "(conf-date, (conf-name | conf-acronym )+,
811
+ conf-num?, conf-loc?, conf-sponsor*,
812
+ conf-theme?)" >
813
+
814
+
815
+ <!-- CONTRIBUTOR MODEL -->
816
+ <!-- Content model for the <contrib> element -->
817
+ <!ENTITY % contrib-model
818
+ "((%contrib-id.class;)*, (%name.class;)*,
819
+ (%degree.class;)*, role?, on-behalf-of?,
820
+ (%aff-alternatives.class;)*, address*,
821
+ email*, ext-link*, uri*, bio?,
822
+ author-comment?)" >
823
+
824
+
825
+ <!-- CONTRIBUTOR GROUP MODEL -->
826
+ <!-- Content model for the <contrib-group>
827
+ element -->
828
+ <!ENTITY % contrib-group-model
829
+ "(%contrib.class;+)" >
830
+
831
+
832
+ <!-- DATE ELEMENTS MODEL -->
833
+ <!-- The content models for elements that describe
834
+ dates, such as Publication Date <pub-date> and
835
+ History Dates <date>. The <string-date>
836
+ element holds dates for which months and
837
+ years are not given, for example "first
838
+ quarter", "spring", etc. -->
839
+ <!ENTITY % date-model
840
+ "(((day?, month?) | season)?, year, era?)" >
841
+
842
+
843
+ <!-- DEFINITION LIST MODEL -->
844
+ <!-- Content model for the <def-list> element -->
845
+ <!ENTITY % def-list-model
846
+ "(title?, term-head?, def-head?,
847
+ (%def-item.class;)+)" >
848
+
849
+
850
+ <!-- DEFINITION LIST: DEFINITION ITEM ELEMENTS -->
851
+ <!-- The elements that can be included inside
852
+ the content model of a <def-item> -->
853
+ <!ENTITY % def-item-model
854
+ "(term, def*)" >
855
+
856
+
857
+ <!-- FORMULA, DISPLAY GROUP MODEL -->
858
+ <!-- Content model for an <disp-formula-group> -->
859
+ <!ENTITY % disp-formula-group-model
860
+ "(label?, (%caption.class;)?,
861
+ (%access.class; | %address-link.class;)*,
862
+ (%block-math.class;)* )" >
863
+
864
+
865
+ <!-- QUOTE, DISPLAYED MODEL -->
866
+ <!-- Content model for the Display Quote element-->
867
+ <!ENTITY % disp-quote-model
868
+ "(title?, (%just-para.class;)+,
869
+ %display-back-matter; )" >
870
+
871
+ <!-- FIGURE-LIKE CONTENT MODEL -->
872
+ <!-- Content model for the Figure element and any
873
+ similarly structured elements -->
874
+ <!ENTITY % fig-model "((%id.class;)*, (%caption.class;)?,
875
+ (%access.class;)*,
876
+ (%block-math.class; |
877
+ %chem-struct-wrap.class; |
878
+ %intable-para.class; |
879
+ %just-table.class; | %just-para.class; |
880
+ %list.class; | %simple-display.class;)*,
881
+ %display-back-matter; )" >
882
+
883
+
884
+ <!-- FOOTNOTE GROUP MODEL -->
885
+ <!-- Content model for the <fn-group> element -->
886
+ <!ENTITY % fn-group-model
887
+ "(title?, (%fn-link.class;)+ )" >
888
+
889
+
890
+ <!-- FOOTNOTE MODEL -->
891
+ <!-- Content model for Footnote <fn> -->
892
+ <!ENTITY % fn-model "((%just-para.class;)+ )" >
893
+
894
+
895
+ <!-- GLOSSARY MODEL -->
896
+ <!-- Content model for the <glossary> element -->
897
+ <!ENTITY % glossary-model
898
+ "(title?, (%just-para.class;)*, def-list*,
899
+ glossary* )" >
900
+
901
+
902
+ <!-- GRAPHIC MODEL -->
903
+ <!-- Content model for the <graphic> element -->
904
+ <!ENTITY % graphic-model
905
+ "((%id.class;)?, (%access.class;)*,
906
+ (%display-back-matter;)*) " >
907
+
908
+
909
+ <!-- KEYWORD GROUP MODEL -->
910
+ <!-- Content model for a <kwd-group> element -->
911
+ <!ENTITY % kwd-group-model
912
+ "(title?, (%kwd.class;)+ )" >
913
+
914
+
915
+ <!-- LIST ITEM ELEMENTS -->
916
+ <!-- The elements that can be included inside
917
+ the content model of a <list-item> -->
918
+ <!ENTITY % list-item-model
919
+ "(label?, title?,
920
+ (%just-para.class; | %list.class;)+ )" >
921
+
922
+
923
+ <!-- LIST MODEL -->
924
+ <!-- Content model for the <list> element -->
925
+ <!ENTITY % list-model "(title?, (%list-item.class;)+)" >
926
+
927
+
928
+ <!-- MEDIA MODEL -->
929
+ <!-- Content model for the <media> element -->
930
+ <!ENTITY % media-model "((%id.class;)?, (%access.class;)*,
931
+ (%display-back-matter;)*) " >
932
+
933
+
934
+ <!-- ON BEHALF OF CONTENT ELEMENTS -->
935
+ <!-- The elements that can be included along with
936
+ data characters inside the content model of
937
+ <on-behalf-of>
938
+ Design Note: -%rendition-plus; begins with
939
+ an OR bar, so this inline mix beguines with
940
+ an OR bar. -->
941
+ <!ENTITY % on-behalf-of-elements
942
+ "%rendition-plus; | %institution-wrap.class; |
943
+ %simple-link.class;" >
944
+
945
+
946
+
947
+ <!-- REFERENCE LIST MODEL -->
948
+ <!-- Content model for the <ref-list> element -->
949
+ <!ENTITY % ref-list-model
950
+ "(title?, (%just-para.class;)*, ref+)" >
951
+
952
+
953
+ <!-- REFERENCE ITEM MODEL
954
+ Model for the <ref> element -->
955
+ <!ENTITY % ref-model "(%citation.class;)+" >
956
+
957
+
958
+ <!-- STATEMENT, FORMAL MODEL -->
959
+ <!-- Content model for the <statement> element -->
960
+ <!ENTITY % statement-model
961
+ "(label?, title?,
962
+ (%just-para.class; | %statement.class;)+,
963
+ (%display-back-matter.class;)*)" >
964
+
965
+
966
+ <!-- SUPPLEMENTARY MATERIAL MODEL -->
967
+ <!-- Content model for the
968
+ <supplementary-material> element -->
969
+ <!ENTITY % supplementary-material-model
970
+ "((%id.class;)*, (%caption.class;)?,
971
+ (%access.class; | %address-link.class;)*,
972
+ (%just-para.class;)*,
973
+ %display-back-matter; )" >
974
+
975
+
976
+ <!-- TABLE WRAPPER CONTENT MODEL -->
977
+ <!-- Content model for the container element that
978
+ surrounds the standard table models for row
979
+ and columns. -->
980
+ <!ENTITY % table-wrap-model
981
+ "((%id.class;)*, (%caption.class;)?,
982
+ (%access.class;)*,
983
+ (%inside-table-wrap;)*,
984
+ %table-foot.class;?,
985
+ %display-back-matter; )" >
986
+
987
+
988
+ <!-- TITLE GROUP MODEL -->
989
+ <!-- Content model for the <title-group> element-->
990
+ <!ENTITY % title-group-model
991
+ "(article-title, subtitle?)" >
992
+
993
+
994
+ <!-- TRANSLATED ABSTRACT MODEL -->
995
+ <!-- Content model for an <trans-abstract> element.
996
+ -->
997
+ <!ENTITY % trans-abstract-model
998
+ "(title?, (%just-para.class;)*, %sec.class;*)"
999
+ >
1000
+
1001
+
1002
+ <!-- VERSE GROUP MODEL -->
1003
+ <!-- Content model for the <verse-group> element-->
1004
+ <!ENTITY % verse-group-model
1005
+ "(title?, subtitle?, verse-line+,
1006
+ %display-back-matter; ) " >
1007
+
1008
+
1009
+ <!-- ============================================================= -->
1010
+ <!-- OVER-RIDES OF ATTRIBUTE VALUES -->
1011
+ <!-- ============================================================= -->
1012
+
1013
+
1014
+ <!-- FOOTNOTE TYPE VALUES -->
1015
+ <!-- Used to mark the semantics of the footnote,
1016
+ what information does this footnote convey.
1017
+ -->
1018
+ <!ENTITY % fn-types "abbr | com | con | conflict |
1019
+ corresp | current-aff | deceased |
1020
+ edited-by | equal |
1021
+ financial-disclosure | on-leave |
1022
+ participating-researchers |
1023
+ presented-at | presented-by |
1024
+ present-address | previously-at |
1025
+ study-group-members |
1026
+ supplementary-material |
1027
+ supported-by | other" >
1028
+
1029
+
1030
+ <!-- LIST PREFIX TYPES -->
1031
+ <!-- Used to request a specific style of prefix
1032
+ characters for the items in lists and
1033
+ de-lists. Ordered is number or letters,
1034
+ bulleted is bullets or other non-ordered
1035
+ character, simple has no prefix at all. -->
1036
+ <!ENTITY % list-types "bullet | order | simple" >
1037
+
1038
+
1039
+ <!-- CROSS(X)-REFERENCE TYPE VALUES -->
1040
+ <!-- Used to say to what the reference is pointing.
1041
+ May be used for type-specific processing or
1042
+ validation. Values are, for example:
1043
+ Affiliation "aff" and Figure "fig", and
1044
+ Bibliographic ref (to a citation. -->
1045
+ <!ENTITY % ref-types "aff | app | bibr | boxed-text | chem |
1046
+ collab | contrib | corresp |
1047
+ disp-formula | fig | fn | kwd | list |
1048
+ plate | scheme | sec | statement |
1049
+ supplementary-material |
1050
+ table | table-fn |
1051
+ other" >
1052
+
1053
+
1054
+ <!-- ============================================================= -->
1055
+ <!-- DUPLICATE ATTRIBUTE DECLARATIONS -->
1056
+ <!-- (These are unchanged from the base Suite, -->
1057
+ <!-- but are used in attribute over-rides below)-->
1058
+ <!-- ============================================================= -->
1059
+
1060
+
1061
+ <!-- COMMON ATTRIBUTES -->
1062
+ <!-- These lists of attributes will be added to
1063
+ nearly every element, in both the document
1064
+ metadata and the document body, of the entire
1065
+ Tag Set:
1066
+ - including table elements for both the
1067
+ XHTML-inspired and OASIS-inspired
1068
+ table model elements
1069
+ - excluding only <mml:math> and
1070
+ <xi:include> (whose namespaces JATS
1071
+ does not control).
1072
+ Great care should be taken to use these
1073
+ attributes judiciously, not as a shortcut to
1074
+ thinking through where an attribute should be
1075
+ used. Potential use cases include adding
1076
+ @xml:lang or some RDFa attribute to every
1077
+ elements. -->
1078
+
1079
+
1080
+ <!-- BASE ATTRIBUTES -->
1081
+ <!-- Holds all the common attributes except @id.
1082
+ Used to keep the two common attribute lists
1083
+ in sync. To add a global attribute, modify
1084
+ this list. -->
1085
+ <!ENTITY % jats-base-atts
1086
+ "xml:base CDATA #IMPLIED" >
1087
+
1088
+
1089
+ <!-- COMMON ATTRIBUTES -->
1090
+ <!-- Holds all the common attributes, as defined in
1091
+ the base attribute parameter entity, plus an
1092
+ optional @id. -->
1093
+ <!ENTITY % jats-common-atts
1094
+ "id ID #IMPLIED
1095
+ %jats-base-atts;" >
1096
+
1097
+
1098
+ <!-- COMMON ATTRIBUTES -->
1099
+ <!-- Holds all the common attributes, as defined in
1100
+ the base attribute parameter entity, plus a
1101
+ required @id. -->
1102
+ <!ENTITY % jats-common-atts-id-required
1103
+ "id ID #REQUIRED
1104
+ %jats-base-atts;" >
1105
+
1106
+
1107
+ <!-- XLINK LINK ATTRIBUTES -->
1108
+ <!-- Attributes for any element that must be a
1109
+ link -->
1110
+ <!ENTITY % link-atts
1111
+ "xmlns:xlink CDATA #IMPLIED
1112
+ xlink:type (simple) #IMPLIED
1113
+ xlink:href CDATA #REQUIRED
1114
+ xlink:role CDATA #IMPLIED
1115
+ xlink:title CDATA #IMPLIED
1116
+ xlink:show (embed | new | none | other | replace)
1117
+ #IMPLIED
1118
+ xlink:actuate
1119
+ (none | onLoad | onRequest | other)
1120
+ #IMPLIED" >
1121
+
1122
+
1123
+ <!-- MIGHT LINK XLINK ATTRIBUTES -->
1124
+ <!-- Attributes for any element that may be a link
1125
+ but need not be one -->
1126
+ <!ENTITY % might-link-atts
1127
+ "xmlns:xlink CDATA #IMPLIED
1128
+ xlink:type (simple) #IMPLIED
1129
+ xlink:href CDATA #IMPLIED
1130
+ xlink:role CDATA #IMPLIED
1131
+ xlink:title CDATA #IMPLIED
1132
+ xlink:show (embed | new | none | other | replace)
1133
+ #IMPLIED
1134
+ xlink:actuate
1135
+ (none | onLoad | onRequest | other)
1136
+ #IMPLIED" >
1137
+
1138
+
1139
+ <!-- ============================================================= -->
1140
+ <!-- OVER-RIDES OF ATTRIBUTE LISTS -->
1141
+ <!-- ============================================================= -->
1142
+
1143
+
1144
+ <!-- COLLABORATION ATTRIBUTES -->
1145
+ <!-- Attributes for <collab> -->
1146
+ <!ENTITY % collab-atts
1147
+ "%jats-common-atts;
1148
+ collab-type
1149
+ CDATA #IMPLIED
1150
+ specific-use
1151
+ CDATA #IMPLIED
1152
+ xml:lang NMTOKEN #IMPLIED
1153
+ %might-link-atts;" >
1154
+
1155
+
1156
+ <!-- FOOTNOTE ATTRIBUTES -->
1157
+ <!-- Attribute list for Footnote element -->
1158
+ <!ENTITY % fn-atts
1159
+ "%jats-common-atts;
1160
+ fn-type (%fn-types;) #IMPLIED
1161
+ specific-use
1162
+ CDATA #IMPLIED
1163
+ xml:lang NMTOKEN #IMPLIED" >
1164
+
1165
+
1166
+ <!-- INLINE GRAPHIC ATTRIBUTES -->
1167
+ <!-- Attributes for Inline Graphic
1168
+ <inline-graphic> -->
1169
+ <!ENTITY % inline-graphic-atts
1170
+ "%jats-common-atts;
1171
+ baseline-shift
1172
+ CDATA #IMPLIED
1173
+ mimetype CDATA #FIXED 'image'
1174
+ mime-subtype
1175
+ (cgm | gif | jpeg | png | tiff) #IMPLIED
1176
+ specific-use
1177
+ CDATA #IMPLIED
1178
+ xml:lang NMTOKEN #IMPLIED
1179
+ %link-atts;" >
1180
+
1181
+
1182
+ <!-- DEFAULT LIST CLASS ATTRIBUTES -->
1183
+ <!-- Default attribute lists to be used for most
1184
+ of the types of lists. Used for the <list>
1185
+ element and <def-list> element. -->
1186
+ <!ENTITY % list-atts
1187
+ "%jats-common-atts;
1188
+ continued-from
1189
+ IDREF #IMPLIED
1190
+ list-type (%list-types;) #IMPLIED
1191
+ prefix-word
1192
+ CDATA #IMPLIED
1193
+ list-content
1194
+ CDATA #IMPLIED
1195
+ specific-use
1196
+ CDATA #IMPLIED
1197
+ xml:lang NMTOKEN #IMPLIED" >
1198
+
1199
+
1200
+
1201
+ <!-- PERSON GROUP ATTRIBUTES -->
1202
+ <!-- Attributes for the <person-group> element -->
1203
+ <!ENTITY % person-group-atts
1204
+ "%jats-common-atts;
1205
+ person-group-type
1206
+ (allauthors | assignee | author | compiler |
1207
+ curator | director | editor | guest-editor |
1208
+ inventor | translator | transed) #IMPLIED
1209
+ specific-use
1210
+ CDATA #IMPLIED
1211
+ xml:lang NMTOKEN #IMPLIED" >
1212
+
1213
+
1214
+ <!-- SECTION ATTRIBUTES -->
1215
+ <!-- Attributes for the <sec> element -->
1216
+ <!ENTITY % sec-atts
1217
+ "%jats-common-atts;
1218
+ sec-type CDATA #IMPLIED
1219
+ specific-use
1220
+ CDATA #IMPLIED
1221
+ xml:lang NMTOKEN #IMPLIED" >
1222
+
1223
+
1224
+ <!-- UNDERLINE ATTRIBUTES -->
1225
+ <!-- Attributes for the <underline> element -->
1226
+ <!ENTITY % underline-atts
1227
+ "%jats-common-atts;
1228
+ toggle (yes | no) #IMPLIED
1229
+ specific-use
1230
+ CDATA #IMPLIED" >
1231
+
1232
+
1233
+ <!-- ================== End Authoring Over-ride Content/ATTLIST == -->