gphys 1.1.1a

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  1. data/ChangeLog +1777 -0
  2. data/LICENSE.txt +34 -0
  3. data/README +33 -0
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  5. data/TODO_ep_flux +6 -0
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data/doc/derivative/gphys-derivative.html ADDED
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+ <?xml version="1.0" ?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml">
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+ <head>
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+ <title>../../lib/numru/gphys/derivative.rb</title>
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+ </head>
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+ <body>
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+ <h1><a name="label:0" id="label:0">module NumRu::GPhys::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative in derivative.rb" -->
11
+ <h2><a name="label:1" id="label:1">Index</a></h2><!-- RDLabel: "Index" -->
12
+ <ul>
13
+ <li><a href="#label:2">module NumRu::GPhys::Derivative</a>
14
+ <ul>
15
+ <li><a href="#label:3">threepoint_O2nd_deriv</a>
16
+ <ul>
17
+ <li>First derivative (2nd Order difference use three point.)</li>
18
+ </ul></li>
19
+ <li><a href="#label:4">cderiv</a>
20
+ <ul>
21
+ <li>First derivative (using center difference method)</li>
22
+ </ul></li>
23
+ </ul></li>
24
+ </ul>
25
+ <h1><a name="label:2" id="label:2">module NumRu::GPhys::Derivative</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative" -->
26
+ <p>Module functions of Derivative Operater for GPhys.</p>
27
+ <dl>
28
+ <dt><a name="label:3" id="label:3"><code>threepoint_O2nd_deriv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>NumRu</var>::<var>Derivative</var>::<var>LINEAR_EXT</var>))</code></a></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
29
+ <dd>
30
+ <p>Derivate <code>z</code> respect to <code>dim</code> th dimension with 2nd Order difference.
31
+ return an NArray which result of the difference <!-- Reference, RDLabel "z" doesn't exist --><em class="label-not-found">z</em><!-- Reference end --> divided difference
32
+ <code>x</code> (in other wards, </p>
33
+ <pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t)):
34
+ now s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
35
+ and _{i} represents the suffix of {i} th element in the ((&lt;dim&gt;)) th
36
+ dimension of array. ).</pre>
37
+ <p>ARGUMENTS</p>
38
+ <ul>
39
+ <li>z (NArray): a NArray which you want to derivative.</li>
40
+ <li>x (NArray): a NArray represents the dimension which derivative respect
41
+ to. z.rank must be 1.</li>
42
+ <li>dim (Numeric): a Numeric represents the dimention which derivative
43
+ respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
44
+ <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
45
+ <li>bc (Numeric) : a Numeric which represent boundary condition.
46
+ now only LINEAR_EXT(=1) supported. LINEAR_EXT load <!-- Reference, RDLabel "b_expand_linear_ext" doesn't exist --><em class="label-not-found">b_expand_linear_ext</em><!-- Reference end -->
47
+ which extend boundary with lenear value.</li>
48
+ </ul>
49
+ <p>RETURN VALUE</p>
50
+ <ul>
51
+ <li>O2nd_deriv_data (NArray):
52
+ (s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
53
+ </ul></dd>
54
+ <dt><a name="label:4" id="label:4"><code>cderiv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>NumRu</var>::<var>Derivative</var>::<var>LINEAR_EXT</var>)</code></a></dt><!-- RDLabel: "cderiv" -->
55
+ <dd>
56
+ <p>Derivate <code>gp</code> respect to <code>dim</code> th or <code>dimname</code> dimension
57
+ with center difference. return a GPhys which result of the difference
58
+ <!-- Reference, RDLabel "gp" doesn't exist --><em class="label-not-found">gp</em><!-- Reference end --> divided difference axis.
59
+ ( in other wards, (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1}): now x is
60
+ axis array which you wants to respects to, _{i} represents the suffix
61
+ of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension of array. ).</p>
62
+ <p>ARGUMENTS</p>
63
+ <ul>
64
+ <li>gp (GPhys): a GPhys which you want to derivative.</li>
65
+ <li>dim_or_dimname (Numeric or String): a Numeric or String represents
66
+ the dimension which derivate respect to. you can give number count
67
+ backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
68
+ <li>bc (Numeric) : a Numeric which represent boundary condition.
69
+ now only NumRu::Derivative::LINEAR_EXT(=1) supported. LINEAR_EXT load
70
+ <!-- Reference, RDLabel "NumRu::Derivative::b_expand_linear_ext" doesn't exist --><em class="label-not-found">NumRu::Derivative::b_expand_linear_ext</em><!-- Reference end --> which extend boundary
71
+ with linear value.</li>
72
+ </ul>
73
+ <p>RETURN VALUE</p>
74
+ <ul>
75
+ <li>a GPhys</li>
76
+ </ul></dd>
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+ </dl>
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+
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+ </body>
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+ </html>
data/doc/derivative/index.html ADDED
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+ <?xml version="1.0" ?>
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+ <head>
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+ <title>index.rd</title>
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+ </head>
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+ <body>
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+ <h1><a name="label:0" id="label:0">Reference manuals of the Derivative library</a></h1><!-- RDLabel: "Reference manuals of the Derivative library" -->
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+ <ul>
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+ <li><a href="numru-derivative.html">module NumRu::Derivative</a> :
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+ Module functions of Derivative Operater for NArray.</li>
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+ <li><a href="gphys-derivative.html">module NumRu::GPhys::Derivative</a> :
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+ Module functions of Derivative Operater for GPhys.</li>
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+ <li><a href="math-doc/document/index.html">description of mathmatical definition</a>
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+ Description of mathmatical definition about Derivative.</li>
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+ </ul>
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+
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+ </body>
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+ </html>
data/doc/derivative/index.rd ADDED
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+ =begin
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+
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+ =Reference manuals of the Derivative library
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+
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+ * ((<module NumRu::Derivative|URL:numru-derivative.html>)) :
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+ Module functions of Derivative Operater for NArray.
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+
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+ * ((<module NumRu::GPhys::Derivative|URL:gphys-derivative.html>)) :
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+ Module functions of Derivative Operater for GPhys.
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+
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+ * ((<description of mathmatical definition|URL:math-doc/document/index.html>))
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+ Description of mathmatical definition about Derivative.
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+
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+ =end
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+ original version by: Nikos Drakos, CBLU, University of Leeds
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