gphys 1.1.1a
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/ChangeLog +1777 -0
- data/LICENSE.txt +34 -0
- data/README +33 -0
- data/Rakefile +57 -0
- data/TODO_ep_flux +6 -0
- data/bin/gdir_client +27 -0
- data/bin/gdir_server +129 -0
- data/bin/gpaop +146 -0
- data/bin/gpcat +148 -0
- data/bin/gpcut +102 -0
- data/bin/gpedit +228 -0
- data/bin/gplist +68 -0
- data/bin/gpmath +120 -0
- data/bin/gpmaxmin +128 -0
- data/bin/gpprint +60 -0
- data/bin/gpvect +706 -0
- data/bin/gpview +704 -0
- data/bin/grads2nc_with_gphys +61 -0
- data/doc/attribute.html +19 -0
- data/doc/attributenetcdf.html +15 -0
- data/doc/axis.html +376 -0
- data/doc/coordmapping.html +111 -0
- data/doc/coordtransform.html +36 -0
- data/doc/derivative/gphys-derivative.html +80 -0
- data/doc/derivative/index.html +21 -0
- data/doc/derivative/index.rd +14 -0
- data/doc/derivative/math-doc/document/document.css +30 -0
- data/doc/derivative/math-doc/document/document.html +57 -0
- data/doc/derivative/math-doc/document/images.aux +1 -0
- data/doc/derivative/math-doc/document/images.log +385 -0
- data/doc/derivative/math-doc/document/images.pl +186 -0
- data/doc/derivative/math-doc/document/images.tex +364 -0
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- data/doc/derivative/math-doc/document.pdf +0 -0
- data/doc/derivative/math-doc/document.tex +158 -0
- data/doc/derivative/numru-derivative.html +129 -0
- data/doc/ep_flux/ep_flux.html +469 -0
- data/doc/ep_flux/ggraph_on_merdional_section.html +71 -0
- data/doc/ep_flux/index.html +31 -0
- data/doc/ep_flux/index.rd +24 -0
- data/doc/ep_flux/math-doc/document/WARNINGS +1 -0
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- data/doc/ep_flux/math-doc/document/document.css +30 -0
- data/doc/ep_flux/math-doc/document/document.html +101 -0
- data/doc/ep_flux/math-doc/document/images.aux +1 -0
- data/doc/ep_flux/math-doc/document/images.log +1375 -0
- data/doc/ep_flux/math-doc/document/images.pl +1328 -0
- data/doc/ep_flux/math-doc/document/images.tex +1471 -0
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- data/doc/gdir_client.html +16 -0
- data/doc/gdir_connect_ftp-like.html +61 -0
- data/doc/gdir_server.html +45 -0
- data/doc/ggraph.html +1615 -0
- data/doc/gpcat.html +44 -0
- data/doc/gpcut.html +41 -0
- data/doc/gphys.html +532 -0
- data/doc/gphys_fft.html +324 -0
- data/doc/gphys_grads_io.html +69 -0
- data/doc/gphys_grib_io.html +82 -0
- data/doc/gphys_io.html +120 -0
- data/doc/gphys_io_common.html +18 -0
- data/doc/gphys_netcdf_io.html +283 -0
- data/doc/gplist.html +24 -0
- data/doc/gpmath.html +51 -0
- data/doc/gpmaxmin.html +31 -0
- data/doc/gpprint.html +34 -0
- data/doc/gpview.html +270 -0
- data/doc/grads2nc_with_gphys.html +21 -0
- data/doc/grads_gridded.html +307 -0
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- data/doc/netcdf_convention.html +136 -0
- data/doc/unumeric.html +176 -0
- data/doc/update +64 -0
- data/doc/varray.html +299 -0
- data/doc/varraycomposite.html +67 -0
- data/ext_coord.c +209 -0
- data/ext_init.c +7 -0
- data/extconf.rb +42 -0
- data/install.rb +130 -0
- data/interpo.c +497 -0
- data/lib/numru/dcl_mouse.rb +71 -0
- data/lib/numru/dclext_datetime_ax.rb +220 -0
- data/lib/numru/derivative.rb +348 -0
- data/lib/numru/ganalysis/covariance.rb +154 -0
- data/lib/numru/ganalysis/eof.rb +298 -0
- data/lib/numru/ganalysis/histogram.rb +252 -0
- data/lib/numru/ganalysis/met.rb +317 -0
- data/lib/numru/ganalysis/planet.rb +182 -0
- data/lib/numru/ganalysis.rb +7 -0
- data/lib/numru/gdir.rb +1038 -0
- data/lib/numru/gdir_connect_ftp-like.rb +149 -0
- data/lib/numru/ggraph.rb +5838 -0
- data/lib/numru/ggraph_on_merdional_section.rb +178 -0
- data/lib/numru/gphys/assoccoords.rb +359 -0
- data/lib/numru/gphys/attribute.rb +129 -0
- data/lib/numru/gphys/attributenetcdf.rb +80 -0
- data/lib/numru/gphys/axis.rb +963 -0
- data/lib/numru/gphys/coordmapping.rb +286 -0
- data/lib/numru/gphys/coordtransform.rb +209 -0
- data/lib/numru/gphys/derivative.rb +314 -0
- data/lib/numru/gphys/ep_flux.rb +868 -0
- data/lib/numru/gphys/gpcommon.rb +52 -0
- data/lib/numru/gphys/gphys.rb +1207 -0
- data/lib/numru/gphys/gphys_fft.rb +886 -0
- data/lib/numru/gphys/gphys_grads_io.rb +212 -0
- data/lib/numru/gphys/gphys_grib_io.rb +214 -0
- data/lib/numru/gphys/gphys_gtool3_io.rb +162 -0
- data/lib/numru/gphys/gphys_hdfeos5_io.rb +672 -0
- data/lib/numru/gphys/gphys_io.rb +452 -0
- data/lib/numru/gphys/gphys_io_common.rb +126 -0
- data/lib/numru/gphys/gphys_netcdf_io.rb +800 -0
- data/lib/numru/gphys/gphys_nusdas_io.rb +132 -0
- data/lib/numru/gphys/grads_gridded.rb +1638 -0
- data/lib/numru/gphys/grib.rb +2049 -0
- data/lib/numru/gphys/grib_params.rb +1465 -0
- data/lib/numru/gphys/grid.rb +723 -0
- data/lib/numru/gphys/gtool3.rb +771 -0
- data/lib/numru/gphys/interpolate.rb +854 -0
- data/lib/numru/gphys/narray_ext.rb +34 -0
- data/lib/numru/gphys/netcdf_convention.rb +406 -0
- data/lib/numru/gphys/subsetmapping.rb +332 -0
- data/lib/numru/gphys/unumeric.rb +522 -0
- data/lib/numru/gphys/varray.rb +1109 -0
- data/lib/numru/gphys/varraycomposite.rb +415 -0
- data/lib/numru/gphys/varraygrads.rb +225 -0
- data/lib/numru/gphys/varraygrib.rb +177 -0
- data/lib/numru/gphys/varraygtool3.rb +226 -0
- data/lib/numru/gphys/varrayhdfeos5.rb +451 -0
- data/lib/numru/gphys/varraynetcdf.rb +350 -0
- data/lib/numru/gphys/varraynusdas.rb +59 -0
- data/lib/numru/gphys.rb +9 -0
- data/lib/numru/htdir.rb +170 -0
- data/multibitIO.c +567 -0
- data/sample/cira86_to_nc.rb +122 -0
- data/sample/druby_cli1.rb +21 -0
- data/sample/druby_cli2.rb +34 -0
- data/sample/druby_serv1.rb +30 -0
- data/sample/druby_serv2.rb +64 -0
- data/sample/ep_flux/demo_NCEP_1.rb +48 -0
- data/sample/ep_flux/demo_NCEP_2.rb +57 -0
- data/sample/ep_flux/demo_NCEP_3.rb +81 -0
- data/sample/ggraph_latlon_labelling_dr002690.rb +159 -0
- data/sample/ggraph_mapfit-axes_dr002687.rb +131 -0
- data/sample/map_projection.rb +121 -0
- data/sample/ncep_theta_coord.rb +79 -0
- data/test/eof_slp.rb +28 -0
- data/test/mltbit.dat +0 -0
- data/test/test_ep_flux.rb +533 -0
- data/test/test_multibitIO.rb +19 -0
- data/testdata/T.jan.ctl +12 -0
- data/testdata/T.jan.dat +0 -0
- data/testdata/T.jan.grib +0 -0
- data/testdata/T.jan.nc +0 -0
- data/testdata/T.jan.packed.withmiss.nc +0 -0
- data/testdata/UV.jan.nc +0 -0
- data/testdata/assoc_crds.nc +0 -0
- data/testdata/cira86.dat +1332 -0
- metadata +621 -0
|
@@ -0,0 +1,61 @@
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#!/usr/bin/env ruby
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##############################################################
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=begin
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= NAME
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grads2nc_with_gphys - GrADS to NetCDF converter
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= WARNING
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Not efficient if the GrADS file has many variables.
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= USAGE
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% grads2nc_with_gphys infilename outfilename [-v varname1 [varname2 ...]]
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= EXAMPLE
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% grads2nc_with_gphys ../testdata/T.jan.ctl tmp.nc
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% grads2nc_with_gphys ../testdata/T.jan.ctl tmp.nc -v T
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=end
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##############################################################
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usage = "\n\n"+<<EOS
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#{$0}: GrADS to NetCDF converter.
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USAGE:
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% #{$0} infilename outfilename [-v varname1 [varname2 ...]]
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Here, the -v option is used to limit variables to copy
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(all variables are copied by default). Note that to copy many
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variables may not be effifient.
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EOS
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# < interpret command-line arguments >
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varnames = nil
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if ARGV[2] == '-v'
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varnames = []
|
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(ARGV.length-3).times{ varnames.unshift( ARGV.pop ) }
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ARGV.pop
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end
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if ARGV.length != 2
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raise usage
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else
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infilename, outfilename = ARGV[0..1]
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end
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# < convert >
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require "numru/gphys"
|
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include NumRu
|
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grfile = GrADS_Gridded.open(infilename)
|
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varnames = grfile.varnames if !varnames
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out_file = NetCDF.create(outfilename)
|
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varnames.each do |varname|
|
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temp = GPhys::GrADS_IO.open(grfile,varname)
|
|
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GPhys::NetCDF_IO.write(out_file,temp)
|
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end
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out_file.close
|
data/doc/attribute.html
ADDED
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@@ -0,0 +1,19 @@
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<?xml version="1.0" ?>
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<!DOCTYPE html
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
|
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<head>
|
|
7
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<title>../lib/numru/gphys/attribute.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label-0" id="label-0">class Attribute < Hash</a></h1><!-- RDLabel: "class Attribute < Hash" -->
|
|
11
|
+
<p>A Hash class compatible with NetCDF attributes.</p>
|
|
12
|
+
<ul>
|
|
13
|
+
<li>Values are restricted to NetCDFAttr values</li>
|
|
14
|
+
<li>Keys must be String or Symbol (Symbol is converted into String such that
|
|
15
|
+
they are used interchangeably. E.g., attr[:units] == attr["units"] )</li>
|
|
16
|
+
</ul>
|
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17
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|
|
18
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</body>
|
|
19
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+
</html>
|
|
@@ -0,0 +1,15 @@
|
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|
1
|
+
<?xml version="1.0" ?>
|
|
2
|
+
<!DOCTYPE html
|
|
3
|
+
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
4
|
+
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
5
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+
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
6
|
+
<head>
|
|
7
|
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<title>../lib/numru/gphys/attributenetcdf.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label:0" id="label:0">class Attribute_NetCDF</a></h1><!-- RDLabel: "class Attribute_NetCDF" -->
|
|
11
|
+
<p>A class to handle NetCDF attributes in the same way as in the
|
|
12
|
+
NumRu::Attribute class.</p>
|
|
13
|
+
|
|
14
|
+
</body>
|
|
15
|
+
</html>
|
data/doc/axis.html
ADDED
|
@@ -0,0 +1,376 @@
|
|
|
1
|
+
<?xml version="1.0" ?>
|
|
2
|
+
<!DOCTYPE html
|
|
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|
+
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
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|
+
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
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|
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<head>
|
|
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|
+
<title>../lib/numru/gphys/axis.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label-0" id="label-0">class NumRu::Axis</a></h1><!-- RDLabel: "class NumRu::Axis" -->
|
|
11
|
+
<p>A class of to handle a descretized physical coordinate.</p>
|
|
12
|
+
<h2><a name="label-1" id="label-1">Overview</a></h2><!-- RDLabel: "Overview" -->
|
|
13
|
+
<p>An NumRu::Axis object is meant to represent a dimension in a NumRu::Grid
|
|
14
|
+
object, which is used in NumRu::Grid (Hereafter, NumRu:: is omitted).
|
|
15
|
+
An Axis has 1-dimensional data on grid-point posisions as a VArray.
|
|
16
|
+
In addition, it can have supplementary data (as VArray objects).</p>
|
|
17
|
+
<p>Three types of axes are supported in this class:</p>
|
|
18
|
+
<pre>1. Simple (mostly point-sampled) axes
|
|
19
|
+
2. Cell-type axes. In this case, grid points are either
|
|
20
|
+
at cell boundaries or within the cells (oftern at the center).
|
|
21
|
+
3. Simple ("bare") indexing (without particular physical meaning)</pre>
|
|
22
|
+
<p>In most applications, the 1st type would be enough, but
|
|
23
|
+
the 2nd type would be useful for some type of numerical
|
|
24
|
+
simulation. The 3rd is not physical and may not be considered as
|
|
25
|
+
"axes", but this could be convenient for some practical applications.</p>
|
|
26
|
+
<h2><a name="label-2" id="label-2">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
|
|
27
|
+
<dl>
|
|
28
|
+
<dt><h4><a name="label-3" id="label-3"><code>Axis.new(<var>cell</var>=<var>false</var>,<var>bare_index</var>=<var>false</var>,<var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "Axis.new" -->
|
|
29
|
+
<dd>
|
|
30
|
+
<p>Constructor. The first two arguments are to specify one of the
|
|
31
|
+
types explained above.</p>
|
|
32
|
+
<p>ARGUMENTS</p>
|
|
33
|
+
<ul>
|
|
34
|
+
<li>cell (true or false)</li>
|
|
35
|
+
<li>bare_index (true or false)</li>
|
|
36
|
+
<li>name (String or nil): the default name (when nil) is "noname"</li>
|
|
37
|
+
</ul>
|
|
38
|
+
<p>RETURN VALUE</p>
|
|
39
|
+
<ul>
|
|
40
|
+
<li>an Axis</li>
|
|
41
|
+
</ul></dd>
|
|
42
|
+
<dt><h4><a name="label-4" id="label-4"><code>Axis.defined_operations</code></a></h4></dt><!-- RDLabel: "Axis.defined_operations" -->
|
|
43
|
+
<dd>
|
|
44
|
+
<p>Returns the name of the methods defined in Axis to do
|
|
45
|
+
some operation along the axis.</p>
|
|
46
|
+
<p>RETURN VALUE</p>
|
|
47
|
+
<ul>
|
|
48
|
+
<li>an Array of String. Current default value is ["integrate","average"].</li>
|
|
49
|
+
</ul></dd>
|
|
50
|
+
<dt><h4><a name="label-5" id="label-5"><code>Axis.humane_messaging = <var>t_or_f</var></code></a></h4></dt><!-- RDLabel: "Axis.humane_messaging = t_or_f" -->
|
|
51
|
+
<dd>
|
|
52
|
+
If false is given, the [] method is changed to return a naive
|
|
53
|
+
straightforward message if the axis is lost. -- By default,
|
|
54
|
+
it returns a fancy but sometimes unwanted message if the
|
|
55
|
+
axis is the time with since field in the form of yyyy-mm-dd.... </dd>
|
|
56
|
+
</dl>
|
|
57
|
+
<h2><a name="label-6" id="label-6">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
|
|
58
|
+
<dl>
|
|
59
|
+
<dt><h4><a name="label-7" id="label-7"><code>name=(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "name=" -->
|
|
60
|
+
<dd>
|
|
61
|
+
<p>Set a name.</p>
|
|
62
|
+
<p>ARGUMENTS</p>
|
|
63
|
+
<ul>
|
|
64
|
+
<li>name (String)</li>
|
|
65
|
+
</ul>
|
|
66
|
+
<p>RETURN VALUE</p>
|
|
67
|
+
<ul>
|
|
68
|
+
<li>name (the argument)</li>
|
|
69
|
+
</ul></dd>
|
|
70
|
+
<dt><h4><a name="label-8" id="label-8"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
|
|
71
|
+
<dd>
|
|
72
|
+
<p>Returns the name.</p>
|
|
73
|
+
<p>RETURN VALUE</p>
|
|
74
|
+
<ul>
|
|
75
|
+
<li>a String</li>
|
|
76
|
+
</ul></dd>
|
|
77
|
+
<dt><h4><a name="label-9" id="label-9"><code>cell?</code></a></h4></dt><!-- RDLabel: "cell?" -->
|
|
78
|
+
<dd>
|
|
79
|
+
<p>Whether or not self is a cell-type axis.</p>
|
|
80
|
+
<p>RETURN VALUE</p>
|
|
81
|
+
<ul>
|
|
82
|
+
<li>true or false</li>
|
|
83
|
+
</ul></dd>
|
|
84
|
+
<dt><h4><a name="label-10" id="label-10"><code>cell_center?</code></a></h4></dt><!-- RDLabel: "cell_center?" -->
|
|
85
|
+
<dd>
|
|
86
|
+
<p>Whether or not self represents data points within the cells (which is
|
|
87
|
+
often, but not necessarily, the centers of the cells).</p>
|
|
88
|
+
<p>RETURN VALUE</p>
|
|
89
|
+
<ul>
|
|
90
|
+
<li>true, false, or nil (when the axis is not cell-type)</li>
|
|
91
|
+
</ul></dd>
|
|
92
|
+
<dt><h4><a name="label-11" id="label-11"><code>cell_bounds?</code></a></h4></dt><!-- RDLabel: "cell_bounds?" -->
|
|
93
|
+
<dd>
|
|
94
|
+
<p>Whether or not self represents data points at the cell bondaries.</p>
|
|
95
|
+
<p>RETURN VALUE</p>
|
|
96
|
+
<ul>
|
|
97
|
+
<li>true, false, or nil (when the axis is not cell-type)</li>
|
|
98
|
+
</ul></dd>
|
|
99
|
+
<dt><h4><a name="label-12" id="label-12"><code>bare_index?</code></a></h4></dt><!-- RDLabel: "bare_index?" -->
|
|
100
|
+
<dd>
|
|
101
|
+
<p>Whether or not self is of the bare-index type.</p>
|
|
102
|
+
<p>RETURN VALUE</p>
|
|
103
|
+
<ul>
|
|
104
|
+
<li>true or false.</li>
|
|
105
|
+
</ul></dd>
|
|
106
|
+
<dt><h4><a name="label-13" id="label-13"><code>flatten</code></a></h4></dt><!-- RDLabel: "flatten" -->
|
|
107
|
+
<dd>
|
|
108
|
+
<p>Returns the VArray objects in self as a flat Array. No cloning is made.</p>
|
|
109
|
+
<p>RETURN VALUE</p>
|
|
110
|
+
<ul>
|
|
111
|
+
<li>an Array of VArray objects.</li>
|
|
112
|
+
</ul></dd>
|
|
113
|
+
<dt><h4><a name="label-14" id="label-14"><code>each_varray</code></a></h4></dt><!-- RDLabel: "each_varray" -->
|
|
114
|
+
<dd>
|
|
115
|
+
<p>Iterator for each VArray object in self (dependent on <a href="#label-13">flatten</a>.</p>
|
|
116
|
+
<p>RETURN VALUE</p>
|
|
117
|
+
<ul>
|
|
118
|
+
<li>an Array of VArray objects (same as <a href="#label-13">flatten</a>).</li>
|
|
119
|
+
</ul></dd>
|
|
120
|
+
<dt><h4><a name="label-15" id="label-15"><code>copy</code></a></h4></dt><!-- RDLabel: "copy" -->
|
|
121
|
+
<dd>
|
|
122
|
+
<p>Make a deep clone onto memory.
|
|
123
|
+
All the VArray objects in the return value will be
|
|
124
|
+
of the root class of VArray.</p>
|
|
125
|
+
<p>RETURN VALUE</p>
|
|
126
|
+
<ul>
|
|
127
|
+
<li>an Axis</li>
|
|
128
|
+
</ul></dd>
|
|
129
|
+
<dt><h4><a name="label-16" id="label-16"><code>collect</code></a></h4></dt><!-- RDLabel: "collect" -->
|
|
130
|
+
<dd>
|
|
131
|
+
<p>This method is like <a href="#label-15">copy</a>, but it is the 'collect'
|
|
132
|
+
iterator for each VArray in self (block required).</p>
|
|
133
|
+
<p>RETURN VALUE</p>
|
|
134
|
+
<ul>
|
|
135
|
+
<li>an Axis</li>
|
|
136
|
+
</ul></dd>
|
|
137
|
+
<dt><h4><a name="label-17" id="label-17"><code>pos=(<var>pos</var>)</code></a></h4></dt><!-- RDLabel: "pos=" -->
|
|
138
|
+
<dd>
|
|
139
|
+
<p>Sets the grid-point positions (disretized coordinate values).</p>
|
|
140
|
+
<p>ARGUMENTS</p>
|
|
141
|
+
<ul>
|
|
142
|
+
<li>pos (a 1D VArray)</li>
|
|
143
|
+
</ul>
|
|
144
|
+
<p>RETURN VALUE</p>
|
|
145
|
+
<ul>
|
|
146
|
+
<li>pos (the argument)</li>
|
|
147
|
+
</ul></dd>
|
|
148
|
+
<dt><h4><a name="label-18" id="label-18"><code>set_pos(<var>pos</var>)</code></a></h4></dt><!-- RDLabel: "set_pos" -->
|
|
149
|
+
<dd>
|
|
150
|
+
<p>Sets the grid-point positions (disretized coordinate values).</p>
|
|
151
|
+
<p>ARGUMENTS</p>
|
|
152
|
+
<ul>
|
|
153
|
+
<li>pos (a 1D VArray)</li>
|
|
154
|
+
</ul>
|
|
155
|
+
<p>RETURN VALUE</p>
|
|
156
|
+
<ul>
|
|
157
|
+
<li>self</li>
|
|
158
|
+
</ul></dd>
|
|
159
|
+
<dt><h4><a name="label-19" id="label-19"><code>pos</code></a></h4></dt><!-- RDLabel: "pos" -->
|
|
160
|
+
<dd>
|
|
161
|
+
<p>Returns the grid-point positions (disretized coordinate values).</p>
|
|
162
|
+
<p>RETURN VALUE</p>
|
|
163
|
+
<ul>
|
|
164
|
+
<li>a VArray (no duplication is made)</li>
|
|
165
|
+
</ul></dd>
|
|
166
|
+
<dt><h4><a name="label-20" id="label-20"><code>cell_center</code></a></h4></dt><!-- RDLabel: "cell_center" -->
|
|
167
|
+
<dd>
|
|
168
|
+
<p>When cell-type, returns the positions of grid points at cell centers.</p>
|
|
169
|
+
<p>RETURN VALUE</p>
|
|
170
|
+
<ul>
|
|
171
|
+
<li>a VArray (no duplication is made)</li>
|
|
172
|
+
</ul></dd>
|
|
173
|
+
<dt><h4><a name="label-21" id="label-21"><code>cell_bounds</code></a></h4></dt><!-- RDLabel: "cell_bounds" -->
|
|
174
|
+
<dd>
|
|
175
|
+
<p>When cell-type, returns the positions of grid points at cell boundaries.</p>
|
|
176
|
+
<p>RETURN VALUE</p>
|
|
177
|
+
<ul>
|
|
178
|
+
<li>a VArray (no duplication is made)</li>
|
|
179
|
+
</ul></dd>
|
|
180
|
+
<dt><h4><a name="label-22" id="label-22"><code>length</code></a></h4></dt><!-- RDLabel: "length" -->
|
|
181
|
+
<dd>
|
|
182
|
+
<p>Returns the length of the axis.</p>
|
|
183
|
+
<p>RETURN VALUE</p>
|
|
184
|
+
<ul>
|
|
185
|
+
<li>an Integer</li>
|
|
186
|
+
</ul></dd>
|
|
187
|
+
<dt><h4><a name="label-23" id="label-23"><code>set_cell(<var>center</var>, <var>bounds</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "set_cell" -->
|
|
188
|
+
<dd>
|
|
189
|
+
<p>Set up cell-type axis, by giving both the cell centers and boundaries.
|
|
190
|
+
Completion of the set up is deferred until one of <a href="#label-25">set_pos_to_center</a>
|
|
191
|
+
and <a href="#label-26">set_pos_to_bounds</a> is called.</p>
|
|
192
|
+
<p>ARGUMENTS</p>
|
|
193
|
+
<ul>
|
|
194
|
+
<li>center (a 1D VArray)</li>
|
|
195
|
+
<li>bounds (a 1D VArray)</li>
|
|
196
|
+
<li>name (String)</li>
|
|
197
|
+
</ul>
|
|
198
|
+
<p>RETURN VALUE</p>
|
|
199
|
+
<ul>
|
|
200
|
+
<li>self</li>
|
|
201
|
+
</ul></dd>
|
|
202
|
+
<dt><h4><a name="label-24" id="label-24"><code>set_cell_guess_bounds(<var>center</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "set_cell_guess_bounds" -->
|
|
203
|
+
<dd>
|
|
204
|
+
<p>Set up cell-type axis, by specifing only the cell centers
|
|
205
|
+
and deriving bounds with a naive assumption.</p>
|
|
206
|
+
<p>ARGUMENTS</p>
|
|
207
|
+
<ul>
|
|
208
|
+
<li>center (a 1D VArray)</li>
|
|
209
|
+
<li>name (String)</li>
|
|
210
|
+
</ul>
|
|
211
|
+
<p>RETURN VALUE</p>
|
|
212
|
+
<ul>
|
|
213
|
+
<li>self</li>
|
|
214
|
+
</ul></dd>
|
|
215
|
+
<dt><h4><a name="label-25" id="label-25"><code>set_pos_to_center</code></a></h4></dt><!-- RDLabel: "set_pos_to_center" -->
|
|
216
|
+
<dd>
|
|
217
|
+
Set the position of the current axis to the centers of the cells.
|
|
218
|
+
This or <a href="#label-26">set_pos_to_bounds</a> is needed to complete the set up
|
|
219
|
+
with set_cell_* methods.</dd>
|
|
220
|
+
<dt><h4><a name="label-26" id="label-26"><code>set_pos_to_bounds</code></a></h4></dt><!-- RDLabel: "set_pos_to_bounds" -->
|
|
221
|
+
<dd>
|
|
222
|
+
Set the position of the current axis to the cell bondaries.
|
|
223
|
+
This or <a href="#label-25">set_pos_to_center</a> is needed to complete the set up
|
|
224
|
+
with set_cell_* methods.</dd>
|
|
225
|
+
<dt><h4><a name="label-27" id="label-27"><code>set_aux(<var>name</var>,<var>vary</var>)</code></a></h4></dt><!-- RDLabel: "set_aux" -->
|
|
226
|
+
<dd>
|
|
227
|
+
<p>Set auxiliary data</p>
|
|
228
|
+
<p>ARGUMENTS</p>
|
|
229
|
+
<ul>
|
|
230
|
+
<li>name (String) a tag to express the kind of the data</li>
|
|
231
|
+
<li>vary (a VArray) the data</li>
|
|
232
|
+
</ul>
|
|
233
|
+
<p>RETURN VALUE</p>
|
|
234
|
+
<ul>
|
|
235
|
+
<li>vary (the 2nd argument)</li>
|
|
236
|
+
</ul></dd>
|
|
237
|
+
<dt><h4><a name="label-28" id="label-28"><code>get_aux(<var>name</var>)</code></a></h4></dt><!-- RDLabel: "get_aux" -->
|
|
238
|
+
<dd>
|
|
239
|
+
<p>Returns auxiliary data</p>
|
|
240
|
+
<p>ARGUMENTS</p>
|
|
241
|
+
<ul>
|
|
242
|
+
<li>name (String) a tag to express the kind of the data (see <a href="#label-27">set_aux</a>).</li>
|
|
243
|
+
</ul>
|
|
244
|
+
<p>RETURN VALUE</p>
|
|
245
|
+
<ul>
|
|
246
|
+
<li>a VArray</li>
|
|
247
|
+
</ul></dd>
|
|
248
|
+
<dt><h4><a name="label-29" id="label-29"><code>aux_names</code></a></h4></dt><!-- RDLabel: "aux_names" -->
|
|
249
|
+
<dd>
|
|
250
|
+
<p>Returns a list of the names of auxiliary data</p>
|
|
251
|
+
<p>RETURN VALUE</p>
|
|
252
|
+
<ul>
|
|
253
|
+
<li>an Array of String</li>
|
|
254
|
+
</ul></dd>
|
|
255
|
+
<dt><h4><a name="label-30" id="label-30"><code>to_gphys(<var>datavary1d</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "to_gphys" -->
|
|
256
|
+
<dd>
|
|
257
|
+
<p>To construct a GPhys object from an Axis.</p>
|
|
258
|
+
<p>ARGUMENTS</p>
|
|
259
|
+
<ul>
|
|
260
|
+
<li>datavary1d (nil or VArray) :
|
|
261
|
+
If nil, the position object of self becomes the main data object.
|
|
262
|
+
If a VArray, it is used as the main data object.</li>
|
|
263
|
+
</ul>
|
|
264
|
+
<p>RETURN VALUE</p>
|
|
265
|
+
<ul>
|
|
266
|
+
<li>a GPhys</li>
|
|
267
|
+
</ul></dd>
|
|
268
|
+
<dt><h4><a name="label-31" id="label-31"><code>[<var>slicer</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
|
|
269
|
+
<dd>
|
|
270
|
+
<p>Returns a subset. Its specification is the same as in NArray.</p>
|
|
271
|
+
<p>RETURN VALUE</p>
|
|
272
|
+
<ul>
|
|
273
|
+
<li>an Axis</li>
|
|
274
|
+
</ul></dd>
|
|
275
|
+
<dt><h4><a name="label-32" id="label-32"><code>cut(<var>coord_cutter</var>)</code></a></h4></dt><!-- RDLabel: "cut" -->
|
|
276
|
+
<dd>
|
|
277
|
+
<p>Similar to <a href="#label-31">[]</a>, but is based on the physical coordinate.</p>
|
|
278
|
+
<p>RETURN VALUE</p>
|
|
279
|
+
<ul>
|
|
280
|
+
<li>an Axis</li>
|
|
281
|
+
</ul></dd>
|
|
282
|
+
<dt><h4><a name="label-33" id="label-33"><code>cut_rank_conserving(<var>coord_cutter</var>)</code></a></h4></dt><!-- RDLabel: "cut_rank_conserving" -->
|
|
283
|
+
<dd>
|
|
284
|
+
<p>Similar to <a href="#label-32">cut</a>, but is always rank-conserving. That is,
|
|
285
|
+
a subset specification like [i] is treated as [i..i]</p>
|
|
286
|
+
<p>RETURN VALUE</p>
|
|
287
|
+
<ul>
|
|
288
|
+
<li>an Axis</li>
|
|
289
|
+
</ul></dd>
|
|
290
|
+
<dt><h4><a name="label-34" id="label-34"><code>integrate(<var>ary</var>,<var>dim</var>)</code></a></h4></dt><!-- RDLabel: "integrate" -->
|
|
291
|
+
<dd>
|
|
292
|
+
<p>Does integration along the axis</p>
|
|
293
|
+
<p>ARGUMENTS</p>
|
|
294
|
+
<ul>
|
|
295
|
+
<li>ary (NArray or NArray-like multi-dimensional data class)
|
|
296
|
+
the data, whose dim-th dimension must have the same length as the axis.</li>
|
|
297
|
+
<li>dim (Integer) : The dimension of ary, to which the operation is applied.</li>
|
|
298
|
+
</ul>
|
|
299
|
+
<p>RETURN VALUE</p>
|
|
300
|
+
<ul>
|
|
301
|
+
<li>an obejct with the same class as ary, or of a Numeric
|
|
302
|
+
class if ary is 1D.</li>
|
|
303
|
+
</ul></dd>
|
|
304
|
+
<dt><h4><a name="label-35" id="label-35"><code>integ_weight</code></a></h4></dt><!-- RDLabel: "integ_weight" -->
|
|
305
|
+
<dd>
|
|
306
|
+
Returns the integration weight (whose default is nil).</dd>
|
|
307
|
+
<dt><h4><a name="label-36" id="label-36"><code>integ_weight=(<var>wgt</var>)</code></a></h4></dt><!-- RDLabel: "integ_weight=" -->
|
|
308
|
+
<dd>
|
|
309
|
+
Sets the integration weight (whose default is nil).</dd>
|
|
310
|
+
<dt><h4><a name="label-37" id="label-37"><code>average(<var>ary</var>,<var>dim</var>)</code></a></h4></dt><!-- RDLabel: "average" -->
|
|
311
|
+
<dd>
|
|
312
|
+
<p>Similar to <a href="#label-34">integrate</a>, but does averaging</p>
|
|
313
|
+
<p>ARGUMENTS</p>
|
|
314
|
+
<ul>
|
|
315
|
+
<li>see <a href="#label-34">integrate</a></li>
|
|
316
|
+
</ul>
|
|
317
|
+
<p>RETURN VALUE</p>
|
|
318
|
+
<ul>
|
|
319
|
+
<li>see <a href="#label-34">integrate</a></li>
|
|
320
|
+
</ul></dd>
|
|
321
|
+
<dt><h4><a name="label-38" id="label-38"><code>average_weight</code></a></h4></dt><!-- RDLabel: "average_weight" -->
|
|
322
|
+
<dd>
|
|
323
|
+
Returns the integration weight (whose default is nil).</dd>
|
|
324
|
+
<dt><h4><a name="label-39" id="label-39"><code>average_weight=(<var>wgt</var>)</code></a></h4></dt><!-- RDLabel: "average_weight=" -->
|
|
325
|
+
<dd>
|
|
326
|
+
Sets the integration weight (whose default is nil).</dd>
|
|
327
|
+
<dt><h4><a name="label-40" id="label-40"><code>draw_positive</code></a></h4></dt><!-- RDLabel: "draw_positive" -->
|
|
328
|
+
<dd>
|
|
329
|
+
<p>Returns the direction to plot the axis, which relies on the
|
|
330
|
+
VArray#axis_draw_positive method.</p>
|
|
331
|
+
<p>RETURN VALUE</p>
|
|
332
|
+
<ul>
|
|
333
|
+
<li>one of the following:
|
|
334
|
+
<ul>
|
|
335
|
+
<li>true: axis should be drawn in the increasing order (to right/upward)</li>
|
|
336
|
+
<li>false: axis should be drawn in the decreasing order</li>
|
|
337
|
+
<li>nil: not specified</li>
|
|
338
|
+
</ul></li>
|
|
339
|
+
</ul></dd>
|
|
340
|
+
<dt><h4><a name="label-41" id="label-41"><code>cyclic?</code></a></h4></dt><!-- RDLabel: "cyclic?" -->
|
|
341
|
+
<dd>
|
|
342
|
+
<p>Returns whether the axis is cyclic.
|
|
343
|
+
(Relies on the VArray#axis_cyclic? method.)</p>
|
|
344
|
+
<p>RETURN VALUE</p>
|
|
345
|
+
<ul>
|
|
346
|
+
<li>one of the following:
|
|
347
|
+
<ul>
|
|
348
|
+
<li>true: cyclic</li>
|
|
349
|
+
<li>false: not cyclic</li>
|
|
350
|
+
<li>nil: not specified</li>
|
|
351
|
+
</ul></li>
|
|
352
|
+
</ul></dd>
|
|
353
|
+
<dt><h4><a name="label-42" id="label-42"><code>modulo</code></a></h4></dt><!-- RDLabel: "modulo" -->
|
|
354
|
+
<dd>
|
|
355
|
+
<p>Returns the modulo of a cyclic axis
|
|
356
|
+
(Relies on the VArray#axis_modulo method.)</p>
|
|
357
|
+
<p>RETURN VALUE</p>
|
|
358
|
+
<ul>
|
|
359
|
+
<li>one of the following:
|
|
360
|
+
<ul>
|
|
361
|
+
<li>Float if the modulo is defined</li>
|
|
362
|
+
<li>nil if modulo is not found</li>
|
|
363
|
+
</ul></li>
|
|
364
|
+
</ul></dd>
|
|
365
|
+
<dt><h4><a name="label-43" id="label-43"><code>cyclic_extendible?</code></a></h4></dt><!-- RDLabel: "cyclic_extendible?" -->
|
|
366
|
+
<dd>
|
|
367
|
+
<p>Returns whether the axis is cyclic and appropriate to extend.
|
|
368
|
+
(Relies on the VArray#axis_cyclic_extendible? method.)</p>
|
|
369
|
+
<p>RETURN VALUE</p>
|
|
370
|
+
<ul>
|
|
371
|
+
<li>true or false</li>
|
|
372
|
+
</ul></dd>
|
|
373
|
+
</dl>
|
|
374
|
+
|
|
375
|
+
</body>
|
|
376
|
+
</html>
|
|
@@ -0,0 +1,111 @@
|
|
|
1
|
+
<?xml version="1.0" ?>
|
|
2
|
+
<!DOCTYPE html
|
|
3
|
+
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
4
|
+
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
5
|
+
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
6
|
+
<head>
|
|
7
|
+
<title>../lib/numru/gphys/coordmapping.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label:0" id="label:0">class CoordMapping</a></h1><!-- RDLabel: "class CoordMapping" -->
|
|
11
|
+
<h2><a name="label:1" id="label:1">Overview</a></h2><!-- RDLabel: "Overview" -->
|
|
12
|
+
<p>Mapping of a coordinate to another. It supports analytic and
|
|
13
|
+
grid-point-based mapping in subclasses. Here in this root
|
|
14
|
+
CoordMapping class only the invariant unity mapping (or no mapping)
|
|
15
|
+
is defined.</p>
|
|
16
|
+
<h2><a name="label:2" id="label:2">Class methods</a></h2><!-- RDLabel: "Class methods" -->
|
|
17
|
+
<dl>
|
|
18
|
+
<dt><h4><a name="label:3" id="label:3"><code>CoordMapping.new</code></a></h4></dt><!-- RDLabel: "CoordMapping.new" -->
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<dd>
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<p>Constructor. One or more arguments can be needed in subclasses</p></dd>
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</dl>
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<h2><a name="label:4" id="label:4">Methods</a></h2><!-- RDLabel: "Methods" -->
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<dl>
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<dt><h4><a name="label:5" id="label:5"><code>map(<var>x</var>,<var>y</var>,<var>z</var>,...)</code></a></h4></dt><!-- RDLabel: "map" -->
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<dd>
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<p>Maps data point(s)</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>x,y,z,... (one or more Numeric or NArray) : data points.
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Mapping is made of [x,y,z,..] (if Numeric) or
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[x[0],y[0],z[0],..], [x[1],y[1],z[1],..], ..(if NArray).
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Thus, the number of arguments must be equal to the rank of
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the mapping. Also, their lengths must agree with each other.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>Array of p,q,r,... (Numeric or NArray) : mapping result</li>
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</ul></dd>
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<dt><h4><a name="label:6" id="label:6"><code>map_grid(<var>x</var>,<var>y</var>,<var>z</var>,...)</code></a></h4></dt><!-- RDLabel: "map_grid" -->
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<dd>
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<p>Same as <a href="#label:5">map</a> but for a regular grid.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>x,y,z,... (one or more 1D NArray) : coordinate values of
|
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a regular grid [x_i, y_j, z_k,..]. The shape of the grid is thus
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[x.length, y.length, z.length,..]. This method needs no redefinition,
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since it calls <a href="#label:5">map</a> inside.</li>
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</ul></dd>
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<dt><h4><a name="label:7" id="label:7"><code>inverse_map(<var>p</var>,<var>q</var>,<var>r</var>,...)</code></a></h4></dt><!-- RDLabel: "inverse_map" -->
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<dd>
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<p>Inversely maps data point(s).</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>p,q,r,... (one or more Numeric or NArray) : data points.
|
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Inverse mapping is made of [p,q,r,..] (if Numeric) or
|
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[p[0],q[0],r[0],..], [p[1],q[1],r[1],..], ..(if NArray).
|
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|
+
Thus, the number of arguments must be equal to the rank of
|
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|
+
the mapping. Also, if NArray, their lengths must agree with each other.</li>
|
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59
|
+
</ul>
|
|
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<p>RETURN VALUE</p>
|
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<ul>
|
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|
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<li>Array of x,y,z,... (Numeric or NArray) : inverse mapping result</li>
|
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|
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</ul></dd>
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<dt><h4><a name="label:8" id="label:8"><code>inverse</code></a></h4></dt><!-- RDLabel: "inverse" -->
|
|
65
|
+
<dd>
|
|
66
|
+
<p>Returns the inverse mapping.</p>
|
|
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|
+
<p>RETURN VALUE</p>
|
|
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|
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<ul>
|
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69
|
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<li>a CoordMapping</li>
|
|
70
|
+
</ul></dd>
|
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|
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<dt><h4><a name="label:9" id="label:9"><code>inversion_rigorous?</code></a></h4></dt><!-- RDLabel: "inversion_rigorous?" -->
|
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|
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<dd>
|
|
73
|
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<p>Whether the inversion is rigorous (analytical)</p>
|
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+
<p>RETURN VALUE</p>
|
|
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|
+
<ul>
|
|
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|
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<li>true or false</li>
|
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|
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</ul></dd>
|
|
78
|
+
</dl>
|
|
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|
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<h1><a name="label:10" id="label:10">class LinearCoordMapping < CoordMapping</a></h1><!-- RDLabel: "class LinearCoordMapping < CoordMapping" -->
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|
+
<h2><a name="label:11" id="label:11">Overview</a></h2><!-- RDLabel: "Overview" -->
|
|
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|
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<p>Linear coordinate mapping expressed as offset + factor*x,
|
|
82
|
+
where offset is a vector (NVect) and factor is a matrix (NMatrix).</p>
|
|
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|
+
<p>Methods listed below are only those newly defined or those whose
|
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|
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arguments are changed.</p>
|
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<h2><a name="label:12" id="label:12">Class methods</a></h2><!-- RDLabel: "Class methods" -->
|
|
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|
+
<dl>
|
|
87
|
+
<dt><h4><a name="label:13" id="label:13"><code>LinearCoordMapping.new(<var>offset</var>=<var>nil</var>, <var>factor</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "LinearCoordMapping.new" -->
|
|
88
|
+
<dd>
|
|
89
|
+
<p>Constructor. If one of offset and factor is not
|
|
90
|
+
specified (nil), a zero vector / a unit matrix is used (at least
|
|
91
|
+
one of them must be given).</p>
|
|
92
|
+
<p>ARGUMENTS</p>
|
|
93
|
+
<ul>
|
|
94
|
+
<li>offset (NVector or nil) : the offset. Its length represents the rank
|
|
95
|
+
of mapping. (if nil a zero vector is assumed)</li>
|
|
96
|
+
<li>factor (NMatrix or nil) : the factor. For consistency,
|
|
97
|
+
( offset.length == factor.shape[0] == factor.shape[1] ) is required.</li>
|
|
98
|
+
</ul></dd>
|
|
99
|
+
</dl>
|
|
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|
+
<h2><a name="label:14" id="label:14">Methods</a></h2><!-- RDLabel: "Methods" -->
|
|
101
|
+
<dl>
|
|
102
|
+
<dt><h4><a name="label:15" id="label:15"><code>offset</code></a></h4></dt><!-- RDLabel: "offset" -->
|
|
103
|
+
<dd>
|
|
104
|
+
<p>Returns the internally stored offset.</p></dd>
|
|
105
|
+
<dt><h4><a name="label:16" id="label:16"><code>factor</code></a></h4></dt><!-- RDLabel: "factor" -->
|
|
106
|
+
<dd>
|
|
107
|
+
<p>Returns the internally stored factor.</p></dd>
|
|
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|
+
</dl>
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</body>
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</html>
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<?xml version="1.0" ?>
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<!DOCTYPE html
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<title>../lib/numru/gphys/coordtransform.rb</title>
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|
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</head>
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|
+
<body>
|
|
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|
+
<h1><a name="label:0" id="label:0">class NumRu::GPhys</a></h1><!-- RDLabel: "class NumRu::GPhys" -->
|
|
11
|
+
<p>Additional methods regarding coordinate transformation.</p>
|
|
12
|
+
<h2><a name="label:1" id="label:1">Methods</a></h2><!-- RDLabel: "Methods" -->
|
|
13
|
+
<dl>
|
|
14
|
+
<dt><h4><a name="label:2" id="label:2"><code>coordtransform( <var>coordmapping</var>, <var>axes_to</var>, *<var>dims</var> )</code></a></h4></dt><!-- RDLabel: "coordtransform" -->
|
|
15
|
+
<dd>
|
|
16
|
+
<p>Coordinate transformation with <var>coordmapping</var> into <var>axes_to</var>.</p>
|
|
17
|
+
<p>ARGUMENTS</p>
|
|
18
|
+
<ul>
|
|
19
|
+
<li><var>coordmapping</var> (CoordMapping) : relation between the new and
|
|
20
|
+
original coordinate systems. Mapping is defined from the new one to
|
|
21
|
+
the orinal one. If the rank of the mapping is smaller than
|
|
22
|
+
the rank of self, <var>dims</var> must be used to specify the
|
|
23
|
+
correspondence. e.g., if the rank of the mapping is 2 and that
|
|
24
|
+
of self is 3 and the mapping is regarding the first 2 dimensions
|
|
25
|
+
of the three, <var>dims</var> must be [0,1].</li>
|
|
26
|
+
<li><var>axes_to</var> (Array of Axis) : grid in the new coordinate system.
|
|
27
|
+
Its length must be the same as the rank of <var>coordmapping</var></li>
|
|
28
|
+
<li><var>dims</var> (integers) : Specifies the dimensions to which
|
|
29
|
+
<var>coordmapping</var> is applied. Needed if
|
|
30
|
+
<code>self.rank!=coordmapping.rank</code> (neglected otherwise).
|
|
31
|
+
The number of integers must agree with the rank of the mapping.</li>
|
|
32
|
+
</ul></dd>
|
|
33
|
+
</dl>
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|
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|
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</body>
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</html>
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