gfdnavi 1.3.0.0

data/vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb

@@ -0,0 +1,39 @@
+## based on http://dev.rubyonrails.org/changeset/9084
+
+ActiveRecord::Associations::AssociationProxy.class_eval do
+  protected
+  def with_scope(*args, &block)
+    @reflection.klass.send :with_scope, *args, &block
+  end
+end
+
+[ ActiveRecord::Associations::AssociationCollection,
+    ActiveRecord::Associations::HasManyThroughAssociation ].each do |klass|
+  klass.class_eval do
+    protected
+    alias :method_missing_without_scopes :method_missing_without_paginate
+    def method_missing_without_paginate(method, *args, &block)
+      if @reflection.klass.scopes.include?(method)
+        @reflection.klass.scopes[method].call(self, *args, &block)
+      else
+        method_missing_without_scopes(method, *args, &block)
+      end
+    end
+  end
+end
+
+# Rails 1.2.6
+ActiveRecord::Associations::HasAndBelongsToManyAssociation.class_eval do
+  protected
+  def method_missing(method, *args, &block)
+    if @target.respond_to?(method) || (!@reflection.klass.respond_to?(method) && Class.respond_to?(method))
+      super
+    elsif @reflection.klass.scopes.include?(method)
+      @reflection.klass.scopes[method].call(self, *args)
+    else
+      @reflection.klass.with_scope(:find => { :conditions => @finder_sql, :joins => @join_sql, :readonly => false }) do
+        @reflection.klass.send(method, *args, &block)
+      end
+    end
+  end
+end if ActiveRecord::Base.respond_to? :find_first

data/vendor/plugins/will_paginate/lib/will_paginate/version.rb

@@ -0,0 +1,9 @@
+module WillPaginate
+  module VERSION
+    MAJOR = 2
+    MINOR = 3
+    TINY  = 3
+
+    STRING = [MAJOR, MINOR, TINY].join('.')
+  end
+end

data/vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb

@@ -0,0 +1,373 @@
+require 'will_paginate/core_ext'
+
+module WillPaginate
+  # = Will Paginate view helpers
+  #
+  # Currently there is only one view helper: +will_paginate+. It renders the
+  # pagination links for the given collection. The helper itself is lightweight
+  # and serves only as a wrapper around link renderer instantiation; the
+  # renderer then does all the hard work of generating the HTML.
+  # 
+  # == Global options for helpers
+  #
+  # Options for pagination helpers are optional and get their default values from the
+  # WillPaginate::ViewHelpers.pagination_options hash. You can write to this hash to
+  # override default options on the global level:
+  #
+  #   WillPaginate::ViewHelpers.pagination_options[:prev_label] = 'Previous page'
+  #
+  # By putting this into your environment.rb you can easily translate link texts to previous
+  # and next pages, as well as override some other defaults to your liking.
+  module ViewHelpers
+    # default options that can be overridden on the global level
+    @@pagination_options = {
+      :class        => 'pagination',
+      :prev_label   => '« Previous',
+      :next_label   => 'Next »',
+      :inner_window => 4, # links around the current page
+      :outer_window => 1, # links around beginning and end
+      :separator    => ' ', # single space is friendly to spiders and non-graphic browsers
+      :param_name   => :page,
+      :params       => nil,
+      :renderer     => 'WillPaginate::LinkRenderer',
+      :page_links   => true,
+      :container    => true
+    }
+    mattr_reader :pagination_options
+
+    # Renders Digg/Flickr-style pagination for a WillPaginate::Collection
+    # object. Nil is returned if there is only one page in total; no point in
+    # rendering the pagination in that case...
+    # 
+    # ==== Options
+    # * <tt>:class</tt> -- CSS class name for the generated DIV (default: "pagination")
+    # * <tt>:prev_label</tt> -- default: "« Previous"
+    # * <tt>:next_label</tt> -- default: "Next »"
+    # * <tt>:inner_window</tt> -- how many links are shown around the current page (default: 4)
+    # * <tt>:outer_window</tt> -- how many links are around the first and the last page (default: 1)
+    # * <tt>:separator</tt> -- string separator for page HTML elements (default: single space)
+    # * <tt>:param_name</tt> -- parameter name for page number in URLs (default: <tt>:page</tt>)
+    # * <tt>:params</tt> -- additional parameters when generating pagination links
+    #   (eg. <tt>:controller => "foo", :action => nil</tt>)
+    # * <tt>:renderer</tt> -- class name, class or instance of a link renderer (default:
+    #   <tt>WillPaginate::LinkRenderer</tt>)
+    # * <tt>:page_links</tt> -- when false, only previous/next links are rendered (default: true)
+    # * <tt>:container</tt> -- toggles rendering of the DIV container for pagination links, set to
+    #   false only when you are rendering your own pagination markup (default: true)
+    # * <tt>:id</tt> -- HTML ID for the container (default: nil). Pass +true+ to have the ID
+    #   automatically generated from the class name of objects in collection: for example, paginating
+    #   ArticleComment models would yield an ID of "article_comments_pagination".
+    #
+    # All options beside listed ones are passed as HTML attributes to the container
+    # element for pagination links (the DIV). For example:
+    # 
+    #   <%= will_paginate @posts, :id => 'wp_posts' %>
+    #
+    # ... will result in:
+    #
+    #   <div class="pagination" id="wp_posts"> ... </div>
+    #
+    # ==== Using the helper without arguments
+    # If the helper is called without passing in the collection object, it will
+    # try to read from the instance variable inferred by the controller name.
+    # For example, calling +will_paginate+ while the current controller is
+    # PostsController will result in trying to read from the <tt>@posts</tt>
+    # variable. Example:
+    #
+    #   <%= will_paginate :id => true %>
+    #
+    # ... will result in <tt>@post</tt> collection getting paginated:
+    #
+    #   <div class="pagination" id="posts_pagination"> ... </div>
+    #
+    def will_paginate(collection = nil, options = {})
+      options, collection = collection, nil if collection.is_a? Hash
+      unless collection or !controller
+        collection_name = "@#{controller.controller_name}"
+        collection = instance_variable_get(collection_name)
+        raise ArgumentError, "The #{collection_name} variable appears to be empty. Did you " +
+          "forget to pass the collection object for will_paginate?" unless collection
+      end
+      # early exit if there is nothing to render
+      return nil unless WillPaginate::ViewHelpers.total_pages_for_collection(collection) > 1
+      
+      options = options.symbolize_keys.reverse_merge WillPaginate::ViewHelpers.pagination_options
+      
+      # get the renderer instance
+      renderer = case options[:renderer]
+      when String
+        options[:renderer].to_s.constantize.new
+      when Class
+        options[:renderer].new
+      else
+        options[:renderer]
+      end
+      # render HTML for pagination
+      renderer.prepare collection, options, self
+      renderer.to_html
+    end
+    
+    # Wrapper for rendering pagination links at both top and bottom of a block
+    # of content.
+    # 
+    #   <% paginated_section @posts do %>
+    #     <ol id="posts">
+    #       <% for post in @posts %>
+    #         <li> ... </li>
+    #       <% end %>
+    #     </ol>
+    #   <% end %>
+    #
+    # will result in:
+    #
+    #   <div class="pagination"> ... </div>
+    #   <ol id="posts">
+    #     ...
+    #   </ol>
+    #   <div class="pagination"> ... </div>
+    #
+    # Arguments are passed to a <tt>will_paginate</tt> call, so the same options
+    # apply. Don't use the <tt>:id</tt> option; otherwise you'll finish with two
+    # blocks of pagination links sharing the same ID (which is invalid HTML).
+    def paginated_section(*args, &block)
+      pagination = will_paginate(*args).to_s
+      content = pagination + capture(&block) + pagination
+      concat content, block.binding
+    end
+
+    # Renders a helpful message with numbers of displayed vs. total entries.
+    # You can use this as a blueprint for your own, similar helpers.
+    #
+    #   <%= page_entries_info @posts %>
+    #   #-> Displaying posts 6 - 10 of 26 in total
+    #
+    # By default, the message will use the humanized class name of objects
+    # in collection: for instance, "project types" for ProjectType models.
+    # Override this to your liking with the <tt>:entry_name</tt> parameter:
+    #
+    #   <%= page_entries_info @posts, :entry_name => 'item' %>
+    #   #-> Displaying items 6 - 10 of 26 in total
+    def page_entries_info(collection, options = {})
+      entry_name = options[:entry_name] ||
+        (collection.empty?? 'entry' : collection.first.class.name.underscore.sub('_', ' '))
+      
+      if collection.total_pages < 2
+        case collection.size
+        when 0; "No #{entry_name.pluralize} found"
+        when 1; "Displaying <b>1</b> #{entry_name}"
+        else;   "Displaying <b>all #{collection.size}</b> #{entry_name.pluralize}"
+        end
+      else
+        %{Displaying #{entry_name.pluralize} <b>%d&nbsp;-&nbsp;%d</b> of <b>%d</b> in total} % [
+          collection.offset + 1,
+          collection.offset + collection.length,
+          collection.total_entries
+        ]
+      end
+    end
+
+    def self.total_pages_for_collection(collection) #:nodoc:
+      if collection.respond_to?('page_count') and !collection.respond_to?('total_pages')
+        WillPaginate::Deprecation.warn <<-MSG
+          You are using a paginated collection of class #{collection.class.name}
+          which conforms to the old API of WillPaginate::Collection by using
+          `page_count`, while the current method name is `total_pages`. Please
+          upgrade yours or 3rd-party code that provides the paginated collection.
+        MSG
+        class << collection
+          def total_pages; page_count; end
+        end
+      end
+      collection.total_pages
+    end
+  end
+
+  # This class does the heavy lifting of actually building the pagination
+  # links. It is used by +will_paginate+ helper internally.
+  class LinkRenderer
+
+    # The gap in page links is represented by:
+    #
+    #   <span class="gap">&hellip;</span>
+    attr_accessor :gap_marker
+    
+    def initialize
+      @gap_marker = '<span class="gap">&hellip;</span>'
+    end
+    
+    # * +collection+ is a WillPaginate::Collection instance or any other object
+    #   that conforms to that API
+    # * +options+ are forwarded from +will_paginate+ view helper
+    # * +template+ is the reference to the template being rendered
+    def prepare(collection, options, template)
+      @collection = collection
+      @options    = options
+      @template   = template
+
+      # reset values in case we're re-using this instance
+      @total_pages = @param_name = @url_string = nil
+    end
+
+    # Process it! This method returns the complete HTML string which contains
+    # pagination links. Feel free to subclass LinkRenderer and change this
+    # method as you see fit.
+    def to_html
+      links = @options[:page_links] ? windowed_links : []
+      # previous/next buttons
+      links.unshift page_link_or_span(@collection.previous_page, 'disabled prev_page', @options[:prev_label])
+      links.push    page_link_or_span(@collection.next_page,     'disabled next_page', @options[:next_label])
+      
+      html = links.join(@options[:separator])
+      @options[:container] ? @template.content_tag(:div, html, html_attributes) : html
+    end
+
+    # Returns the subset of +options+ this instance was initialized with that
+    # represent HTML attributes for the container element of pagination links.
+    def html_attributes
+      return @html_attributes if @html_attributes
+      @html_attributes = @options.except *(WillPaginate::ViewHelpers.pagination_options.keys - [:class])
+      # pagination of Post models will have the ID of "posts_pagination"
+      if @options[:container] and @options[:id] === true
+        @html_attributes[:id] = @collection.first.class.name.underscore.pluralize + '_pagination'
+      end
+      @html_attributes
+    end
+    
+  protected
+
+    # Collects link items for visible page numbers.
+    def windowed_links
+      prev = nil
+
+      visible_page_numbers.inject [] do |links, n|
+        # detect gaps:
+        links << gap_marker if prev and n > prev + 1
+        links << page_link_or_span(n, 'current')
+        prev = n
+        links
+      end
+    end
+
+    # Calculates visible page numbers using the <tt>:inner_window</tt> and
+    # <tt>:outer_window</tt> options.
+    def visible_page_numbers
+      inner_window, outer_window = @options[:inner_window].to_i, @options[:outer_window].to_i
+      window_from = current_page - inner_window
+      window_to = current_page + inner_window
+      
+      # adjust lower or upper limit if other is out of bounds
+      if window_to > total_pages
+        window_from -= window_to - total_pages
+        window_to = total_pages
+      end
+      if window_from < 1
+        window_to += 1 - window_from
+        window_from = 1
+        window_to = total_pages if window_to > total_pages
+      end
+      
+      visible   = (1..total_pages).to_a
+      left_gap  = (2 + outer_window)...window_from
+      right_gap = (window_to + 1)...(total_pages - outer_window)
+      visible  -= left_gap.to_a  if left_gap.last - left_gap.first > 1
+      visible  -= right_gap.to_a if right_gap.last - right_gap.first > 1
+
+      visible
+    end
+    
+    def page_link_or_span(page, span_class, text = nil)
+      text ||= page.to_s
+      
+      if page and page != current_page
+        classnames = span_class && span_class.index(' ') && span_class.split(' ', 2).last
+        page_link page, text, :rel => rel_value(page), :class => classnames
+      else
+        page_span page, text, :class => span_class
+      end
+    end
+
+    def page_link(page, text, attributes = {})
+      @template.link_to text, url_for(page), attributes
+    end
+
+    def page_span(page, text, attributes = {})
+      @template.content_tag :span, text, attributes
+    end
+
+    # Returns URL params for +page_link_or_span+, taking the current GET params
+    # and <tt>:params</tt> option into account.
+    def url_for(page)
+      page_one = page == 1
+      unless @url_string and !page_one
+        @url_params = {}
+        # page links should preserve GET parameters
+        stringified_merge @url_params, @template.params if @template.request.get?
+        stringified_merge @url_params, @options[:params] if @options[:params]
+        
+        if complex = param_name.index(/[^\w-]/)
+          page_param = (defined?(CGIMethods) ? CGIMethods : ActionController::AbstractRequest).
+            parse_query_parameters("#{param_name}=#{page}")
+          
+          stringified_merge @url_params, page_param
+        else
+          @url_params[param_name] = page_one ? 1 : 2
+        end
+
+        url = @template.url_for(@url_params)
+        return url if page_one
+        
+        if complex
+          @url_string = url.sub(%r!((?:\?|&amp;)#{CGI.escape param_name}=)#{page}!, '\1@')
+          return url
+        else
+          @url_string = url
+          @url_params[param_name] = 3
+          @template.url_for(@url_params).split(//).each_with_index do |char, i|
+            if char == '3' and url[i, 1] == '2'
+              @url_string[i] = '@'
+              break
+            end
+          end
+        end
+      end
+      # finally!
+      @url_string.sub '@', page.to_s
+    end
+
+  private
+
+    def rel_value(page)
+      case page
+      when @collection.previous_page; 'prev' + (page == 1 ? ' start' : '')
+      when @collection.next_page; 'next'
+      when 1; 'start'
+      end
+    end
+
+    def current_page
+      @collection.current_page
+    end
+
+    def total_pages
+      @total_pages ||= WillPaginate::ViewHelpers.total_pages_for_collection(@collection)
+    end
+
+    def param_name
+      @param_name ||= @options[:param_name].to_s
+    end
+
+    # Recursively merge into target hash by using stringified keys from the other one
+    def stringified_merge(target, other)
+      other.each do |key, value|
+        key = key.to_s # this line is what it's all about!
+        existing = target[key]
+
+        if value.is_a?(Hash) and (existing.is_a?(Hash) or existing.nil?)
+          stringified_merge(existing || (target[key] = {}), value)
+        else
+          target[key] = value
+        end
+      end
+    end
+  end
+end

data/vendor/plugins/will_paginate/will_paginate.gemspec

@@ -0,0 +1,21 @@
+Gem::Specification.new do |s|
+  s.name    = 'will_paginate'
+  s.version = '2.3.2'
+  s.date    = '2008-05-16'
+  
+  s.summary = "Most awesome pagination solution for Rails"
+  s.description = "The will_paginate library provides a simple, yet powerful and extensible API for ActiveRecord pagination and rendering of pagination links in ActionView templates."
+  
+  s.authors  = ['Mislav Marohnić', 'PJ Hyett']
+  s.email    = 'mislav.marohnic@gmail.com'
+  s.homepage = 'http://github.com/mislav/will_paginate/wikis'
+  
+  s.has_rdoc = true
+  s.rdoc_options = ['--main', 'README.rdoc']
+  s.rdoc_options << '--inline-source' << '--charset=UTF-8'
+  s.extra_rdoc_files = ['README.rdoc', 'LICENSE', 'CHANGELOG']
+  s.add_dependency 'activesupport', ['>= 1.4.4']
+  
+  s.files = %w(CHANGELOG LICENSE README.rdoc Rakefile examples examples/apple-circle.gif examples/index.haml examples/index.html examples/pagination.css examples/pagination.sass init.rb lib lib/will_paginate lib/will_paginate.rb lib/will_paginate/array.rb lib/will_paginate/collection.rb lib/will_paginate/core_ext.rb lib/will_paginate/finder.rb lib/will_paginate/named_scope.rb lib/will_paginate/named_scope_patch.rb lib/will_paginate/version.rb lib/will_paginate/view_helpers.rb test test/boot.rb test/collection_test.rb test/console test/database.yml test/finder_test.rb test/fixtures test/fixtures/admin.rb test/fixtures/developer.rb test/fixtures/developers_projects.yml test/fixtures/project.rb test/fixtures/projects.yml test/fixtures/replies.yml test/fixtures/reply.rb test/fixtures/schema.rb test/fixtures/topic.rb test/fixtures/topics.yml test/fixtures/user.rb test/fixtures/users.yml test/helper.rb test/lib test/lib/activerecord_test_case.rb test/lib/activerecord_test_connector.rb test/lib/load_fixtures.rb test/lib/view_test_process.rb test/tasks.rake test/view_test.rb)
+  s.test_files = %w(test/boot.rb test/collection_test.rb test/console test/database.yml test/finder_test.rb test/fixtures test/fixtures/admin.rb test/fixtures/developer.rb test/fixtures/developers_projects.yml test/fixtures/project.rb test/fixtures/projects.yml test/fixtures/replies.yml test/fixtures/reply.rb test/fixtures/schema.rb test/fixtures/topic.rb test/fixtures/topics.yml test/fixtures/user.rb test/fixtures/users.yml test/helper.rb test/lib test/lib/activerecord_test_case.rb test/lib/activerecord_test_connector.rb test/lib/load_fixtures.rb test/lib/view_test_process.rb test/tasks.rake test/view_test.rb)
+end

metadata

@@ -0,0 +1,586 @@
+--- !ruby/object:Gem::Specification 
+name: gfdnavi
+version: !ruby/object:Gem::Version 
+  version: 1.3.0.0
+platform: ruby
+authors: 
+- Seiya Nishizawa
+autorequire: 
+bindir: .
+cert_chain: []
+
+date: 2009-03-11 00:00:00 +09:00
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: rails
+  type: :runtime
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - "="
+      - !ruby/object:Gem::Version 
+        version: 2.2.2
+    version: 
+- !ruby/object:Gem::Dependency 
+  name: rake
+  type: :runtime
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: 0.8.3
+    version: 
+- !ruby/object:Gem::Dependency 
+  name: sqlite3-ruby
+  type: :runtime
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - "="
+      - !ruby/object:Gem::Version 
+        version: 1.2.2
+    version: 
+description: 
+email: seiya@gfd-dennou.org
+executables: 
+- gfdnavi-install
+extensions: []
+
+extra_rdoc_files: []
+
+files: 
+- ChangeLog
+- consistency_checker.rb
+- install.rb
+- gfdnavi-install
+- LICENCE.txt
+- Makefile
+- TODO
+- app/controllers
+- app/controllers/analysis_controller.rb
+- app/controllers/application.rb
+- app/controllers/draw_method_controller.rb
+- app/controllers/explorer_controller.rb
+- app/controllers/finder_controller.rb
+- app/controllers/function_controller.rb
+- app/controllers/group_controller.rb
+- app/controllers/keyword_attributes_controller.rb
+- app/controllers/knowledge_controller.rb
+- app/controllers/nodes_controller.rb
+- app/controllers/search_controller.rb
+- app/controllers/user_controller.rb
+- app/helpers
+- app/helpers/analysis_helper.rb
+- app/helpers/application_helper.rb
+- app/helpers/description_helper.rb
+- app/helpers/function_helper.rb
+- app/helpers/group_helper.rb
+- app/helpers/search_helper.rb
+- app/helpers/user_helper.rb
+- app/helpers/work_flow_helper.rb
+- app/models
+- app/models/actual_file.rb
+- app/models/analysis.rb
+- app/models/analysis_history.rb
+- app/models/cross_array.rb
+- app/models/cross_result.rb
+- app/models/derived_spatial_attribute.rb
+- app/models/diagram_cache.rb
+- app/models/diagram_cache_datum.rb
+- app/models/diagram_cache_session.rb
+- app/models/directory.rb
+- app/models/draw_method.rb
+- app/models/draw_method_attribute.rb
+- app/models/draw_parameter.rb
+- app/models/explorer_query.rb
+- app/models/explorer_result.rb
+- app/models/function.rb
+- app/models/function_argument.rb
+- app/models/function_output.rb
+- app/models/group.rb
+- app/models/image.rb
+- app/models/keyword_attribute.rb
+- app/models/knowledge.rb
+- app/models/knowledge_backup.rb
+- app/models/knowledge_figure.rb
+- app/models/knowledge_figure_backup.rb
+- app/models/knowledge_parser.rb
+- app/models/node.rb
+- app/models/node_entity_abstract.rb
+- app/models/node_lineage.rb
+- app/models/node_relation.rb
+- app/models/path_node.rb
+- app/models/query.rb
+- app/models/query_history.rb
+- app/models/results.rb
+- app/models/sign_up_user.rb
+- app/models/spatial_and_time_attribute.rb
+- app/models/user.rb
+- app/models/user_mailer.rb
+- app/models/value_type.rb
+- app/models/variable.rb
+- app/models/virtual_node.rb
+- app/views
+- app/views/analysis
+- app/views/analysis/index.rhtml
+- app/views/analysis/preview.rhtml
+- app/views/analysis/save.rhtml
+- app/views/analysis/show_diagram.rhtml
+- app/views/analysis/_analysis_function_settings.rhtml
+- app/views/analysis/_analysis_settings.rhtml
+- app/views/analysis/_diagram.rhtml
+- app/views/analysis/_dimension_option.rhtml
+- app/views/analysis/_draw_general_settings.rhtml
+- app/views/analysis/_draw_settings.rhtml
+- app/views/analysis/_history.rhtml
+- app/views/analysis/_popular_diagrams.rhtml
+- app/views/analysis/_save_form.rhtml
+- app/views/analysis/_variables.rhtml
+- app/views/analysis/_variables_order.rhtml
+- app/views/analysis/__help_analysis_tab.en.html
+- app/views/analysis/__help_draw_share.en.html
+- app/views/analysis/__help_draw_tab.en.html
+- app/views/cross
+- app/views/cross/index.rhtml
+- app/views/cross/_display_map.rhtml
+- app/views/cross/_result.rhtml
+- app/views/cross/_show_results.rhtml
+- app/views/cross/_show_result_tree.rhtml
+- app/views/cross/_style.rhtml
+- app/views/draw_method
+- app/views/draw_method/create.rhtml
+- app/views/draw_method/details.rhtml
+- app/views/draw_method/edit.rhtml
+- app/views/draw_method/list.rhtml
+- app/views/draw_method/_edit_form.rhtml
+- app/views/explorer
+- app/views/explorer/index.rhtml
+- app/views/explorer/_display_map.rhtml
+- app/views/explorer/_show_results.rhtml
+- app/views/explorer/_show_result_tree.rhtml
+- app/views/explorer/_style.rhtml
+- app/views/finder
+- app/views/finder/create_tree.html.erb
+- app/views/finder/flex.html.erb
+- app/views/finder/index.html.erb
+- app/views/finder/show_details.html.erb
+- app/views/finder/show_images.html.erb
+- app/views/finder/_children.html.erb
+- app/views/finder/_children_details.html.erb
+- app/views/finder/_children_details_tr.html.erb
+- app/views/function
+- app/views/function/create.rhtml
+- app/views/function/details.rhtml
+- app/views/function/edit.rhtml
+- app/views/function/list.rhtml
+- app/views/function/_edit_form.rhtml
+- app/views/group
+- app/views/group/add_member.rhtml
+- app/views/group/change_owner.rhtml
+- app/views/group/create.rhtml
+- app/views/group/delete_member.rhtml
+- app/views/group/list.rhtml
+- app/views/knowledge
+- app/views/knowledge/edit.rhtml
+- app/views/knowledge/list.rhtml
+- app/views/knowledge/new.rhtml
+- app/views/knowledge/new_from_analysis.rhtml
+- app/views/knowledge/show.rhtml
+- app/views/knowledge/_backup.rhtml
+- app/views/knowledge/_category.rhtml
+- app/views/knowledge/_category_list.rhtml
+- app/views/knowledge/_category_table.rhtml
+- app/views/knowledge/_comment.rhtml
+- app/views/knowledge/_comments.rhtml
+- app/views/knowledge/_comment_input_form.rhtml
+- app/views/knowledge/_form.rhtml
+- app/views/knowledge/_group_figure_form.rhtml
+- app/views/knowledge/_layout_figure.rhtml
+- app/views/knowledge/_layout_figures_in_a_row_above_text.rhtml
+- app/views/knowledge/_layout_figures_under_text.rhtml
+- app/views/knowledge/_layout_one_figure_above_text.rhtml
+- app/views/knowledge/_summary.rhtml
+- app/views/layouts
+- app/views/layouts/gfdnavi.rhtml
+- app/views/nodes
+- app/views/nodes/description.html.erb
+- app/views/nodes/description_methods.html.erb
+- app/views/nodes/edit.html.erb
+- app/views/nodes/index.html.erb
+- app/views/nodes/show.html.erb
+- app/views/nodes/_ancestors.html.erb
+- app/views/nodes/_description_methods_table.html.erb
+- app/views/nodes/_mode.html.erb
+- app/views/search
+- app/views/search/mapsearch.rhtml
+- app/views/search/remapsearch.rjs
+- app/views/search/show_details.rhtml
+- app/views/search/_children_details_mapsearch.rhtml
+- app/views/search/_children_details_tr.rhtml
+- app/views/search/_show_grouplist.rhtml
+- app/views/search/_show_results.rhtml
+- app/views/search/_show_results_global.rhtml
+- app/views/search/_show_results_partial.rhtml
+- app/views/search/_show_results_partial_groupbyfile.rhtml
+- app/views/search/_show_variablelist.rhtml
+- app/views/user
+- app/views/user/add_user.rhtml
+- app/views/user/change_password.rhtml
+- app/views/user/edit.html.erb
+- app/views/user/index.rhtml
+- app/views/user/login.rhtml
+- app/views/user/logout.rhtml
+- app/views/user/signup.rhtml
+- app/views/user/signup_succeeded.rhtml
+- app/views/user_mailer
+- app/views/user_mailer/authorization_inform.rhtml
+- app/views/user_mailer/signup_accepted.rhtml
+- app/views/user_mailer/signup_confirm.rhtml
+- app/views/user_mailer/signup_inform.rhtml
+- app/views/user_mailer/signup_rejected.rhtml
+- app/views/work_flow
+- app/views/work_flow/index.rhtml
+- app/views/work_flow/_push_wsdls.rhtml
+- config/database.yml.example
+- config/environment.rb
+- config/gfdnavi.yml.example
+- config/load_config.rb
+- config/routes.rb
+- data/gfdnavi_docs
+- data/gfdnavi_docs/how_to_draw_multiple_images.knlge
+- data/gfdnavi_docs/how_to_knowledge.knlge
+- data/gfdnavi_docs/how_to_write_document_about_Gfdnavi.knlge
+- data/samples
+- data/samples/jmadata
+- data/samples/jmadata/MSM-P
+- data/samples/jmadata/MSM-P/2006
+- data/samples/jmadata/MSM-P/2006/0101.nc
+- data/samples/jmadata/MSM-P/2006/0101.nc.yml
+- data/samples/jmadata/MSM-P/2006/0102.nc
+- data/samples/jmadata/MSM-P/2006/0103.nc
+- data/samples/jmadata/MSM-P/2006/0104.nc
+- data/samples/jmadata/MSM-P/2006/0105.nc
+- data/samples/jmadata/MSM-P/2006/010[1-3].nc.yml
+- data/samples/jmadata/MSM-P/2006/skip_data.rb
+- data/samples/jmadata/MSM-P/2006/skip_data.sh
+- data/samples/jmadata/MSM-P/2006.nc.yml
+- data/samples/jmadata/MSM-P/2006.yml
+- data/samples/jmadata.SIGEN
+- data/samples/jmadata.yml
+- data/samples/reanalysis
+- data/samples/reanalysis/era40
+- data/samples/reanalysis/era40/t.jan.nc
+- data/samples/reanalysis/era40/t.jan.nc.yml
+- data/samples/reanalysis/era40.SIGEN
+- data/samples/reanalysis/era40.yml
+- data/samples/reanalysis/ncep
+- data/samples/reanalysis/ncep/T.jan.100hPa.png
+- data/samples/reanalysis/ncep/T.jan.100hPa.png.yml
+- data/samples/reanalysis/ncep/T.jan.nc
+- data/samples/reanalysis/ncep/T.jan.zonal_mean.nc
+- data/samples/reanalysis/ncep/T.jan.zonal_mean.nc.yml
+- data/samples/reanalysis/ncep/T.jan_only_root.nc
+- data/samples/reanalysis/ncep/T.jan_only_root.nc.yml
+- data/samples/reanalysis/ncep/UV.jan.nc
+- data/samples/reanalysis/ncep/UV.jan.nc.yml
+- data/samples/reanalysis/ncep/UV.jan.nc.yml.ja
+- data/samples/reanalysis/ncep.SIGEN
+- data/samples/reanalysis.SIGEN
+- data/samples/sonde_operational
+- data/samples/sonde_operational/std_plev
+- data/samples/sonde_operational/std_plev/41256.spl.nc
+- data/samples/sonde_operational/std_plev/42410.spl.nc
+- data/samples/sonde_operational/std_plev/43333.spl.nc
+- data/samples/sonde_operational/std_plev/43346.spl.nc
+- data/samples/sonde_operational/std_plev/48698.spl.nc
+- data/samples/sonde_operational/std_plev/61641.spl.nc
+- data/samples/sonde_operational/std_plev/63741.spl.nc
+- data/samples/sonde_operational/std_plev/67083.spl.nc
+- data/samples/sonde_operational/std_plev/72261.spl.nc
+- data/samples/sonde_operational/std_plev/76805.spl.nc
+- data/samples/sonde_operational/std_plev/82193.spl.nc
+- data/samples/sonde_operational/std_plev/91165.spl.nc
+- data/samples/sonde_operational/std_plev/91610.spl.nc
+- data/samples/sonde_operational/std_plev/91948.spl.nc
+- data/samples/sonde_operational/std_plev/94294.spl.nc
+- data/samples/sonde_operational/std_plev.yml
+- data/samples/sonde_operational.yml
+- db/create_derived_spatial_attributes.sql
+- db/draw_methods
+- db/draw_methods/line.yml
+- db/draw_methods/scatter.yml
+- db/draw_methods/tone.yml
+- db/draw_methods/vector.yml
+- db/dump_db.rb
+- db/functions
+- db/functions/additions.yml
+- db/functions/cut.yml
+- db/functions/division.yml
+- db/functions/mean.yml
+- db/functions/multiplication.yml
+- db/functions/stddev.yml
+- db/functions/subtraction.yml
+- db/migrate
+- db/migrate/001_initial_scheme.rb
+- db/migrate/002_add_open_id_authentication_tables.rb
+- db/NetCDFparser.rb
+- db/register_directory_tree.rb
+- db/restore_db.rb
+- lib/activerecord_gfdnavi.rb
+- lib/basic_authorization.rb
+- lib/create_activeresources.rb
+- lib/execute_analysis.rb
+- lib/file_gfdnavi.rb
+- lib/gphys_gfdnavi.rb
+- lib/localdir.rb
+- lib/login_system.rb
+- lib/multibytes.rb
+- lib/narray_yaml.rb
+- lib/no_rdb_base.rb
+- lib/opendapdir.rb
+- lib/tar.rb
+- lib/tasks
+- lib/tasks/clean.rake
+- lib/tasks/setup.rake
+- lib/tasks/update.rake
+- lib/vizshot_gfdnavi.rb
+- public/crossdomain.xml
+- public/flex
+- public/flex/finder.mxml
+- public/flex/finder.swf
+- public/flex/gfdnavi.mxml
+- public/flex/gfdnavi.swf
+- public/flex/NodeTreeDescriptor.as
+- public/flex/TreeNode.as
+- public/images
+- public/images/analyze.gif
+- public/images/circle.gif
+- public/images/create_from_analysis_button.png
+- public/images/delete.png
+- public/images/down.png
+- public/images/drawbutton.gif
+- public/images/gfdnavi_home_logo.png
+- public/images/gfdnavi_logo_big.png
+- public/images/gfdnavi_logo_med.png
+- public/images/gfdnavi_logo_mini.png
+- public/images/gfdnavi_logo_nobg_big.png
+- public/images/gfdnavi_logo_nobg_med.png
+- public/images/gfdnavi_logo_nobg_small.png
+- public/images/gfdnavi_logo_small.png
+- public/images/gfdnavi_logo_xsmall.png
+- public/images/hbar.png
+- public/images/helpmark16.png
+- public/images/helpmark18.png
+- public/images/Help_S-shots
+- public/images/Help_S-shots/dir_tree_with_add.jpg
+- public/images/kikyu_g.gif
+- public/images/kikyu_r.gif
+- public/images/map_icon_g.gif
+- public/images/map_icon_r.gif
+- public/images/new_knowledge.png
+- public/images/openid.png
+- public/images/read_in_the_form.png
+- public/images/slider_f.gif
+- public/images/slider_f_red.gif
+- public/images/star1.gif
+- public/images/star2.gif
+- public/images/startanim.gif
+- public/images/stopanim.gif
+- public/images/tree
+- public/images/tree/analyze_visualize_checked_items.png
+- public/images/tree/anal_viz.png
+- public/images/tree/binary.png
+- public/images/tree/details.png
+- public/images/tree/DL.png
+- public/images/tree/download_checked_items.png
+- public/images/tree/folder.png
+- public/images/tree/folder_close.gif
+- public/images/tree/image2.png
+- public/images/tree/knowledge.png
+- public/images/tree/knowledges.png
+- public/images/tree/last.gif
+- public/images/tree/last.png
+- public/images/tree/minus.gif
+- public/images/tree/minus_simple.gif
+- public/images/tree/none.gif
+- public/images/tree/none.png
+- public/images/tree/plus.gif
+- public/images/tree/plus_simple.gif
+- public/images/tree/show.png
+- public/images/tree/show_checked_items.png
+- public/images/tree/t.gif
+- public/images/tree/t.png
+- public/images/tree/tate.gif
+- public/images/tree/tate.png
+- public/images/up.png
+- public/images/vbar.png
+- public/images/white.bmp
+- public/images/x.gif
+- public/index.html
+- public/javascripts
+- public/javascripts/AC_OETags.js
+- public/javascripts/analysis.js
+- public/javascripts/application.js
+- public/javascripts/directory_tree.js
+- public/javascripts/draw_method.js
+- public/javascripts/excanvas.js
+- public/javascripts/function.js
+- public/javascripts/gfdnavi.js
+- public/javascripts/knowledge.js
+- public/javascripts/mapsearch.js
+- public/javascripts/progress.js
+- public/javascripts/resizable_box.js
+- public/javascripts/slider.js
+- public/javascripts/tab.js
+- public/javascripts/work_flow.js
+- public/stylesheets
+- public/stylesheets/analysis.css
+- public/stylesheets/description.css
+- public/stylesheets/gfdnavi.css
+- public/stylesheets/knowledge.css
+- public/stylesheets/search.css
+- public/stylesheets/tree.css
+- public/stylesheets/tree_for_ie.css
+- public/stylesheets/work_flow.css
+- script/cleaner
+- script/server_ssl
+- test/fixtures
+- test/fixtures/diagram_caches.yml
+- test/fixtures/diagram_cache_data.yml
+- test/fixtures/diagram_cache_sessions.yml
+- test/fixtures/directories.yml
+- test/fixtures/draw_parameters.yml
+- test/fixtures/functions.yml
+- test/fixtures/function_arguments.yml
+- test/fixtures/function_outputs.yml
+- test/fixtures/groups.yml
+- test/fixtures/group_members.yml
+- test/fixtures/images.yml
+- test/fixtures/keyword_attributes.yml
+- test/fixtures/knowledges.yml
+- test/fixtures/nodes.yml
+- test/fixtures/node_relations.yml
+- test/fixtures/sign_up_users.yml
+- test/fixtures/spatial_and_time_attributes.yml
+- test/fixtures/users.yml
+- test/fixtures/user_mailer
+- test/fixtures/user_mailer/authorization_inform
+- test/fixtures/user_mailer/signup_accepted
+- test/fixtures/user_mailer/signup_confirm
+- test/fixtures/user_mailer/signup_inform
+- test/fixtures/user_mailer/signup_rejected
+- test/fixtures/value_types.yml
+- test/fixtures/variables.yml
+- test/functional
+- test/functional/analysis_controller_test.rb
+- test/functional/description_controller_test.rb
+- test/functional/function_controller_test.rb
+- test/functional/group_controller_test.rb
+- test/functional/search_controller_test.rb
+- test/functional/user_controller_test.rb
+- test/functional/webservice_analysis_api_test.rb
+- test/functional/work_flow_controller_test.rb
+- test/test_helper.rb
+- test/unit
+- test/unit/diagram_cache_datum_test.rb
+- test/unit/diagram_cache_session_test.rb
+- test/unit/diagram_cache_test.rb
+- test/unit/directory_test.rb
+- test/unit/draw_parameter_test.rb
+- test/unit/function_argument_test.rb
+- test/unit/function_output_test.rb
+- test/unit/function_test.rb
+- test/unit/group_test.rb
+- test/unit/image_test.rb
+- test/unit/keyword_attribute_test.rb
+- test/unit/knowledge_test.rb
+- test/unit/node_relation_test.rb
+- test/unit/node_test.rb
+- test/unit/sign_up_user_test.rb
+- test/unit/spatial_and_time_attribute_test.rb
+- test/unit/user_mailer_test.rb
+- test/unit/user_test.rb
+- test/unit/value_type_test.rb
+- test/unit/variable_test.rb
+- vendor/plugins
+- vendor/plugins/acts_as_list
+- vendor/plugins/acts_as_list/init.rb
+- vendor/plugins/acts_as_list/lib
+- vendor/plugins/acts_as_list/lib/active_record
+- vendor/plugins/acts_as_list/lib/active_record/acts
+- vendor/plugins/acts_as_list/lib/active_record/acts/list.rb
+- vendor/plugins/acts_as_list/README
+- vendor/plugins/acts_as_list/test
+- vendor/plugins/acts_as_list/test/list_test.rb
+- vendor/plugins/acts_as_tree
+- vendor/plugins/acts_as_tree/init.rb
+- vendor/plugins/acts_as_tree/lib
+- vendor/plugins/acts_as_tree/lib/active_record
+- vendor/plugins/acts_as_tree/lib/active_record/acts
+- vendor/plugins/acts_as_tree/lib/active_record/acts/tree.rb
+- vendor/plugins/acts_as_tree/Rakefile
+- vendor/plugins/acts_as_tree/README
+- vendor/plugins/acts_as_tree/test
+- vendor/plugins/acts_as_tree/test/abstract_unit.rb
+- vendor/plugins/acts_as_tree/test/acts_as_tree_test.rb
+- vendor/plugins/acts_as_tree/test/database.yml
+- vendor/plugins/acts_as_tree/test/fixtures
+- vendor/plugins/acts_as_tree/test/fixtures/mixin.rb
+- vendor/plugins/acts_as_tree/test/fixtures/mixins.yml
+- vendor/plugins/acts_as_tree/test/schema.rb
+- vendor/plugins/will_paginate
+- vendor/plugins/will_paginate/CHANGELOG
+- vendor/plugins/will_paginate/examples
+- vendor/plugins/will_paginate/examples/apple-circle.gif
+- vendor/plugins/will_paginate/examples/index.haml
+- vendor/plugins/will_paginate/examples/index.html
+- vendor/plugins/will_paginate/examples/pagination.css
+- vendor/plugins/will_paginate/examples/pagination.sass
+- vendor/plugins/will_paginate/init.rb
+- vendor/plugins/will_paginate/lib
+- vendor/plugins/will_paginate/lib/will_paginate
+- vendor/plugins/will_paginate/lib/will_paginate/array.rb
+- vendor/plugins/will_paginate/lib/will_paginate/collection.rb
+- vendor/plugins/will_paginate/lib/will_paginate/core_ext.rb
+- vendor/plugins/will_paginate/lib/will_paginate/finder.rb
+- vendor/plugins/will_paginate/lib/will_paginate/named_scope.rb
+- vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb
+- vendor/plugins/will_paginate/lib/will_paginate/version.rb
+- vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb
+- vendor/plugins/will_paginate/lib/will_paginate.rb
+- vendor/plugins/will_paginate/LICENSE
+- vendor/plugins/will_paginate/Rakefile
+- vendor/plugins/will_paginate/README.rdoc
+- vendor/plugins/will_paginate/will_paginate.gemspec
+has_rdoc: false
+homepage: http://ruby.gfd-dennou.org/products/gfdnavi/index-j.html
+post_install_message: 
+rdoc_options: []
+
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+requirements: 
+- rails == v2.2.2
+- rake  >= v0.8.3
+- sqlite3-ruby == v1.2.2
+rubyforge_project: 
+rubygems_version: 1.3.1
+signing_key: 
+specification_version: 2
+summary: a gtk+ based grid data analyser and viewer writen on Ruby
+test_files: []
+