gfdnavi 1.3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (446) hide show
  1. data/ChangeLog +10949 -0
  2. data/LICENCE.txt +57 -0
  3. data/Makefile +18 -0
  4. data/TODO +132 -0
  5. data/app/controllers/analysis_controller.rb +700 -0
  6. data/app/controllers/application.rb +41 -0
  7. data/app/controllers/draw_method_controller.rb +172 -0
  8. data/app/controllers/explorer_controller.rb +197 -0
  9. data/app/controllers/finder_controller.rb +331 -0
  10. data/app/controllers/function_controller.rb +204 -0
  11. data/app/controllers/group_controller.rb +115 -0
  12. data/app/controllers/keyword_attributes_controller.rb +52 -0
  13. data/app/controllers/knowledge_controller.rb +928 -0
  14. data/app/controllers/nodes_controller.rb +515 -0
  15. data/app/controllers/search_controller.rb +341 -0
  16. data/app/controllers/user_controller.rb +337 -0
  17. data/app/helpers/analysis_helper.rb +2 -0
  18. data/app/helpers/application_helper.rb +105 -0
  19. data/app/helpers/description_helper.rb +2 -0
  20. data/app/helpers/function_helper.rb +2 -0
  21. data/app/helpers/group_helper.rb +2 -0
  22. data/app/helpers/search_helper.rb +3 -0
  23. data/app/helpers/user_helper.rb +2 -0
  24. data/app/helpers/work_flow_helper.rb +92 -0
  25. data/app/models/actual_file.rb +3 -0
  26. data/app/models/analysis.rb +715 -0
  27. data/app/models/analysis_history.rb +42 -0
  28. data/app/models/cross_array.rb +22 -0
  29. data/app/models/cross_result.rb +254 -0
  30. data/app/models/derived_spatial_attribute.rb +3 -0
  31. data/app/models/diagram_cache.rb +16 -0
  32. data/app/models/diagram_cache_datum.rb +4 -0
  33. data/app/models/diagram_cache_session.rb +8 -0
  34. data/app/models/directory.rb +21 -0
  35. data/app/models/draw_method.rb +48 -0
  36. data/app/models/draw_method_attribute.rb +8 -0
  37. data/app/models/draw_parameter.rb +12 -0
  38. data/app/models/explorer_query.rb +354 -0
  39. data/app/models/explorer_result.rb +312 -0
  40. data/app/models/function.rb +75 -0
  41. data/app/models/function_argument.rb +6 -0
  42. data/app/models/function_output.rb +4 -0
  43. data/app/models/group.rb +153 -0
  44. data/app/models/image.rb +20 -0
  45. data/app/models/keyword_attribute.rb +179 -0
  46. data/app/models/knowledge.rb +94 -0
  47. data/app/models/knowledge_backup.rb +32 -0
  48. data/app/models/knowledge_figure.rb +16 -0
  49. data/app/models/knowledge_figure_backup.rb +16 -0
  50. data/app/models/knowledge_parser.rb +392 -0
  51. data/app/models/node.rb +605 -0
  52. data/app/models/node_entity_abstract.rb +112 -0
  53. data/app/models/node_lineage.rb +6 -0
  54. data/app/models/node_relation.rb +4 -0
  55. data/app/models/path_node.rb +60 -0
  56. data/app/models/query.rb +193 -0
  57. data/app/models/query_history.rb +12 -0
  58. data/app/models/results.rb +48 -0
  59. data/app/models/sign_up_user.rb +25 -0
  60. data/app/models/spatial_and_time_attribute.rb +11 -0
  61. data/app/models/user.rb +115 -0
  62. data/app/models/user_mailer.rb +48 -0
  63. data/app/models/value_type.rb +3 -0
  64. data/app/models/variable.rb +70 -0
  65. data/app/models/virtual_node.rb +457 -0
  66. data/app/views/analysis/__help_analysis_tab.en.html +57 -0
  67. data/app/views/analysis/__help_draw_share.en.html +12 -0
  68. data/app/views/analysis/__help_draw_tab.en.html +6 -0
  69. data/app/views/analysis/_analysis_function_settings.rhtml +61 -0
  70. data/app/views/analysis/_analysis_settings.rhtml +28 -0
  71. data/app/views/analysis/_diagram.rhtml +70 -0
  72. data/app/views/analysis/_dimension_option.rhtml +59 -0
  73. data/app/views/analysis/_draw_general_settings.rhtml +217 -0
  74. data/app/views/analysis/_draw_settings.rhtml +73 -0
  75. data/app/views/analysis/_history.rhtml +19 -0
  76. data/app/views/analysis/_popular_diagrams.rhtml +42 -0
  77. data/app/views/analysis/_save_form.rhtml +44 -0
  78. data/app/views/analysis/_variables.rhtml +66 -0
  79. data/app/views/analysis/_variables_order.rhtml +56 -0
  80. data/app/views/analysis/index.rhtml +195 -0
  81. data/app/views/analysis/preview.rhtml +3 -0
  82. data/app/views/analysis/save.rhtml +73 -0
  83. data/app/views/analysis/show_diagram.rhtml +42 -0
  84. data/app/views/cross/_display_map.rhtml +201 -0
  85. data/app/views/cross/_result.rhtml +205 -0
  86. data/app/views/cross/_show_result_tree.rhtml +40 -0
  87. data/app/views/cross/_show_results.rhtml +80 -0
  88. data/app/views/cross/_style.rhtml +21 -0
  89. data/app/views/cross/index.rhtml +271 -0
  90. data/app/views/draw_method/_edit_form.rhtml +110 -0
  91. data/app/views/draw_method/create.rhtml +8 -0
  92. data/app/views/draw_method/details.rhtml +113 -0
  93. data/app/views/draw_method/edit.rhtml +8 -0
  94. data/app/views/draw_method/list.rhtml +80 -0
  95. data/app/views/explorer/_display_map.rhtml +199 -0
  96. data/app/views/explorer/_show_result_tree.rhtml +40 -0
  97. data/app/views/explorer/_show_results.rhtml +101 -0
  98. data/app/views/explorer/_style.rhtml +21 -0
  99. data/app/views/explorer/index.rhtml +214 -0
  100. data/app/views/finder/_children.html.erb +84 -0
  101. data/app/views/finder/_children_details.html.erb +74 -0
  102. data/app/views/finder/_children_details_tr.html.erb +196 -0
  103. data/app/views/finder/create_tree.html.erb +15 -0
  104. data/app/views/finder/flex.html.erb +52 -0
  105. data/app/views/finder/index.html.erb +47 -0
  106. data/app/views/finder/show_details.html.erb +3 -0
  107. data/app/views/finder/show_images.html.erb +3 -0
  108. data/app/views/function/_edit_form.rhtml +106 -0
  109. data/app/views/function/create.rhtml +8 -0
  110. data/app/views/function/details.rhtml +96 -0
  111. data/app/views/function/edit.rhtml +8 -0
  112. data/app/views/function/list.rhtml +80 -0
  113. data/app/views/group/add_member.rhtml +13 -0
  114. data/app/views/group/change_owner.rhtml +15 -0
  115. data/app/views/group/create.rhtml +11 -0
  116. data/app/views/group/delete_member.rhtml +14 -0
  117. data/app/views/group/list.rhtml +63 -0
  118. data/app/views/knowledge/_backup.rhtml +135 -0
  119. data/app/views/knowledge/_category.rhtml +58 -0
  120. data/app/views/knowledge/_category_list.rhtml +34 -0
  121. data/app/views/knowledge/_category_table.rhtml +23 -0
  122. data/app/views/knowledge/_comment.rhtml +64 -0
  123. data/app/views/knowledge/_comment_input_form.rhtml +19 -0
  124. data/app/views/knowledge/_comments.rhtml +84 -0
  125. data/app/views/knowledge/_form.rhtml +139 -0
  126. data/app/views/knowledge/_group_figure_form.rhtml +187 -0
  127. data/app/views/knowledge/_layout_figure.rhtml +61 -0
  128. data/app/views/knowledge/_layout_figures_in_a_row_above_text.rhtml +42 -0
  129. data/app/views/knowledge/_layout_figures_under_text.rhtml +45 -0
  130. data/app/views/knowledge/_layout_one_figure_above_text.rhtml +28 -0
  131. data/app/views/knowledge/_summary.rhtml +21 -0
  132. data/app/views/knowledge/edit.rhtml +37 -0
  133. data/app/views/knowledge/list.rhtml +287 -0
  134. data/app/views/knowledge/new.rhtml +23 -0
  135. data/app/views/knowledge/new_from_analysis.rhtml +21 -0
  136. data/app/views/knowledge/show.rhtml +196 -0
  137. data/app/views/layouts/gfdnavi.rhtml +105 -0
  138. data/app/views/nodes/_ancestors.html.erb +89 -0
  139. data/app/views/nodes/_description_methods_table.html.erb +75 -0
  140. data/app/views/nodes/_mode.html.erb +16 -0
  141. data/app/views/nodes/description.html.erb +181 -0
  142. data/app/views/nodes/description_methods.html.erb +1 -0
  143. data/app/views/nodes/edit.html.erb +73 -0
  144. data/app/views/nodes/index.html.erb +25 -0
  145. data/app/views/nodes/show.html.erb +20 -0
  146. data/app/views/search/_children_details_mapsearch.rhtml +68 -0
  147. data/app/views/search/_children_details_tr.rhtml +205 -0
  148. data/app/views/search/_show_grouplist.rhtml +74 -0
  149. data/app/views/search/_show_results.rhtml +43 -0
  150. data/app/views/search/_show_results_global.rhtml +36 -0
  151. data/app/views/search/_show_results_partial.rhtml +39 -0
  152. data/app/views/search/_show_results_partial_groupbyfile.rhtml +50 -0
  153. data/app/views/search/_show_variablelist.rhtml +28 -0
  154. data/app/views/search/mapsearch.rhtml +176 -0
  155. data/app/views/search/remapsearch.rjs +18 -0
  156. data/app/views/search/show_details.rhtml +3 -0
  157. data/app/views/user/add_user.rhtml +30 -0
  158. data/app/views/user/change_password.rhtml +25 -0
  159. data/app/views/user/edit.html.erb +50 -0
  160. data/app/views/user/index.rhtml +162 -0
  161. data/app/views/user/login.rhtml +41 -0
  162. data/app/views/user/logout.rhtml +4 -0
  163. data/app/views/user/signup.rhtml +36 -0
  164. data/app/views/user/signup_succeeded.rhtml +36 -0
  165. data/app/views/user_mailer/authorization_inform.rhtml +15 -0
  166. data/app/views/user_mailer/signup_accepted.rhtml +12 -0
  167. data/app/views/user_mailer/signup_confirm.rhtml +14 -0
  168. data/app/views/user_mailer/signup_inform.rhtml +13 -0
  169. data/app/views/user_mailer/signup_rejected.rhtml +11 -0
  170. data/app/views/work_flow/_push_wsdls.rhtml +55 -0
  171. data/app/views/work_flow/index.rhtml +46 -0
  172. data/config/database.yml.example +35 -0
  173. data/config/environment.rb +68 -0
  174. data/config/gfdnavi.yml.example +95 -0
  175. data/config/load_config.rb +151 -0
  176. data/config/routes.rb +35 -0
  177. data/consistency_checker.rb +129 -0
  178. data/data/gfdnavi_docs/how_to_draw_multiple_images.knlge +68 -0
  179. data/data/gfdnavi_docs/how_to_knowledge.knlge +138 -0
  180. data/data/gfdnavi_docs/how_to_write_document_about_Gfdnavi.knlge +30 -0
  181. data/data/samples/jmadata.SIGEN +8 -0
  182. data/data/samples/jmadata.yml +6 -0
  183. data/data/samples/jmadata/MSM-P/2006.nc.yml +2 -0
  184. data/data/samples/jmadata/MSM-P/2006.yml +17 -0
  185. data/data/samples/jmadata/MSM-P/2006/0101.nc +0 -0
  186. data/data/samples/jmadata/MSM-P/2006/0101.nc.yml +13 -0
  187. data/data/samples/jmadata/MSM-P/2006/0102.nc +0 -0
  188. data/data/samples/jmadata/MSM-P/2006/0103.nc +0 -0
  189. data/data/samples/jmadata/MSM-P/2006/0104.nc +0 -0
  190. data/data/samples/jmadata/MSM-P/2006/0105.nc +0 -0
  191. data/data/samples/jmadata/MSM-P/2006/010[1-3].nc.yml +2 -0
  192. data/data/samples/jmadata/MSM-P/2006/skip_data.rb +96 -0
  193. data/data/samples/jmadata/MSM-P/2006/skip_data.sh +6 -0
  194. data/data/samples/reanalysis.SIGEN +8 -0
  195. data/data/samples/reanalysis/era40.SIGEN +8 -0
  196. data/data/samples/reanalysis/era40.yml +2 -0
  197. data/data/samples/reanalysis/era40/t.jan.nc +0 -0
  198. data/data/samples/reanalysis/era40/t.jan.nc.yml +1 -0
  199. data/data/samples/reanalysis/ncep.SIGEN +9 -0
  200. data/data/samples/reanalysis/ncep/T.jan.100hPa.png +0 -0
  201. data/data/samples/reanalysis/ncep/T.jan.100hPa.png.yml +43 -0
  202. data/data/samples/reanalysis/ncep/T.jan.nc +0 -0
  203. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc +0 -0
  204. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc.yml +8 -0
  205. data/data/samples/reanalysis/ncep/T.jan_only_root.nc +0 -0
  206. data/data/samples/reanalysis/ncep/T.jan_only_root.nc.yml +4 -0
  207. data/data/samples/reanalysis/ncep/UV.jan.nc +0 -0
  208. data/data/samples/reanalysis/ncep/UV.jan.nc.yml +10 -0
  209. data/data/samples/reanalysis/ncep/UV.jan.nc.yml.ja +11 -0
  210. data/data/samples/sonde_operational.yml +5 -0
  211. data/data/samples/sonde_operational/std_plev.yml +12 -0
  212. data/data/samples/sonde_operational/std_plev/41256.spl.nc +0 -0
  213. data/data/samples/sonde_operational/std_plev/42410.spl.nc +0 -0
  214. data/data/samples/sonde_operational/std_plev/43333.spl.nc +0 -0
  215. data/data/samples/sonde_operational/std_plev/43346.spl.nc +0 -0
  216. data/data/samples/sonde_operational/std_plev/48698.spl.nc +0 -0
  217. data/data/samples/sonde_operational/std_plev/61641.spl.nc +0 -0
  218. data/data/samples/sonde_operational/std_plev/63741.spl.nc +0 -0
  219. data/data/samples/sonde_operational/std_plev/67083.spl.nc +0 -0
  220. data/data/samples/sonde_operational/std_plev/72261.spl.nc +0 -0
  221. data/data/samples/sonde_operational/std_plev/76805.spl.nc +0 -0
  222. data/data/samples/sonde_operational/std_plev/82193.spl.nc +0 -0
  223. data/data/samples/sonde_operational/std_plev/91165.spl.nc +0 -0
  224. data/data/samples/sonde_operational/std_plev/91610.spl.nc +0 -0
  225. data/data/samples/sonde_operational/std_plev/91948.spl.nc +0 -0
  226. data/data/samples/sonde_operational/std_plev/94294.spl.nc +0 -0
  227. data/db/NetCDFparser.rb +406 -0
  228. data/db/create_derived_spatial_attributes.sql +12 -0
  229. data/db/draw_methods/line.yml +6 -0
  230. data/db/draw_methods/scatter.yml +38 -0
  231. data/db/draw_methods/tone.yml +64 -0
  232. data/db/draw_methods/vector.yml +19 -0
  233. data/db/dump_db.rb +43 -0
  234. data/db/functions/additions.yml +10 -0
  235. data/db/functions/cut.yml +10 -0
  236. data/db/functions/division.yml +10 -0
  237. data/db/functions/mean.yml +28 -0
  238. data/db/functions/multiplication.yml +10 -0
  239. data/db/functions/stddev.yml +28 -0
  240. data/db/functions/subtraction.yml +10 -0
  241. data/db/migrate/001_initial_scheme.rb +289 -0
  242. data/db/migrate/002_add_open_id_authentication_tables.rb +20 -0
  243. data/db/register_directory_tree.rb +760 -0
  244. data/db/restore_db.rb +60 -0
  245. data/gfdnavi-install +828 -0
  246. data/install.rb +828 -0
  247. data/lib/activerecord_gfdnavi.rb +31 -0
  248. data/lib/basic_authorization.rb +50 -0
  249. data/lib/create_activeresources.rb +108 -0
  250. data/lib/execute_analysis.rb +472 -0
  251. data/lib/file_gfdnavi.rb +38 -0
  252. data/lib/gphys_gfdnavi.rb +81 -0
  253. data/lib/localdir.rb +110 -0
  254. data/lib/login_system.rb +110 -0
  255. data/lib/multibytes.rb +20 -0
  256. data/lib/narray_yaml.rb +58 -0
  257. data/lib/no_rdb_base.rb +40 -0
  258. data/lib/opendapdir.rb +171 -0
  259. data/lib/tar.rb +127 -0
  260. data/lib/tasks/clean.rake +65 -0
  261. data/lib/tasks/setup.rake +316 -0
  262. data/lib/tasks/update.rake +62 -0
  263. data/lib/vizshot_gfdnavi.rb +224 -0
  264. data/public/crossdomain.xml +4 -0
  265. data/public/flex/NodeTreeDescriptor.as +55 -0
  266. data/public/flex/TreeNode.as +253 -0
  267. data/public/flex/finder.mxml +304 -0
  268. data/public/flex/finder.swf +0 -0
  269. data/public/flex/gfdnavi.mxml +52 -0
  270. data/public/flex/gfdnavi.swf +0 -0
  271. data/public/images/Help_S-shots/dir_tree_with_add.jpg +0 -0
  272. data/public/images/analyze.gif +0 -0
  273. data/public/images/circle.gif +0 -0
  274. data/public/images/create_from_analysis_button.png +0 -0
  275. data/public/images/delete.png +0 -0
  276. data/public/images/down.png +0 -0
  277. data/public/images/drawbutton.gif +0 -0
  278. data/public/images/gfdnavi_home_logo.png +0 -0
  279. data/public/images/gfdnavi_logo_big.png +0 -0
  280. data/public/images/gfdnavi_logo_med.png +0 -0
  281. data/public/images/gfdnavi_logo_mini.png +0 -0
  282. data/public/images/gfdnavi_logo_nobg_big.png +0 -0
  283. data/public/images/gfdnavi_logo_nobg_med.png +0 -0
  284. data/public/images/gfdnavi_logo_nobg_small.png +0 -0
  285. data/public/images/gfdnavi_logo_small.png +0 -0
  286. data/public/images/gfdnavi_logo_xsmall.png +0 -0
  287. data/public/images/hbar.png +0 -0
  288. data/public/images/helpmark16.png +0 -0
  289. data/public/images/helpmark18.png +0 -0
  290. data/public/images/kikyu_g.gif +0 -0
  291. data/public/images/kikyu_r.gif +0 -0
  292. data/public/images/map_icon_g.gif +0 -0
  293. data/public/images/map_icon_r.gif +0 -0
  294. data/public/images/new_knowledge.png +0 -0
  295. data/public/images/openid.png +0 -0
  296. data/public/images/read_in_the_form.png +0 -0
  297. data/public/images/slider_f.gif +0 -0
  298. data/public/images/slider_f_red.gif +0 -0
  299. data/public/images/star1.gif +0 -0
  300. data/public/images/star2.gif +0 -0
  301. data/public/images/startanim.gif +0 -0
  302. data/public/images/stopanim.gif +0 -0
  303. data/public/images/tree/DL.png +0 -0
  304. data/public/images/tree/anal_viz.png +0 -0
  305. data/public/images/tree/analyze_visualize_checked_items.png +0 -0
  306. data/public/images/tree/binary.png +0 -0
  307. data/public/images/tree/details.png +0 -0
  308. data/public/images/tree/download_checked_items.png +0 -0
  309. data/public/images/tree/folder.png +0 -0
  310. data/public/images/tree/folder_close.gif +0 -0
  311. data/public/images/tree/image2.png +0 -0
  312. data/public/images/tree/knowledge.png +0 -0
  313. data/public/images/tree/knowledges.png +0 -0
  314. data/public/images/tree/last.gif +0 -0
  315. data/public/images/tree/last.png +0 -0
  316. data/public/images/tree/minus.gif +0 -0
  317. data/public/images/tree/minus_simple.gif +0 -0
  318. data/public/images/tree/none.gif +0 -0
  319. data/public/images/tree/none.png +0 -0
  320. data/public/images/tree/plus.gif +0 -0
  321. data/public/images/tree/plus_simple.gif +0 -0
  322. data/public/images/tree/show.png +0 -0
  323. data/public/images/tree/show_checked_items.png +0 -0
  324. data/public/images/tree/t.gif +0 -0
  325. data/public/images/tree/t.png +0 -0
  326. data/public/images/tree/tate.gif +0 -0
  327. data/public/images/tree/tate.png +0 -0
  328. data/public/images/up.png +0 -0
  329. data/public/images/vbar.png +0 -0
  330. data/public/images/white.bmp +0 -0
  331. data/public/images/x.gif +0 -0
  332. data/public/index.html +100 -0
  333. data/public/javascripts/AC_OETags.js +269 -0
  334. data/public/javascripts/analysis.js +751 -0
  335. data/public/javascripts/application.js +29 -0
  336. data/public/javascripts/directory_tree.js +102 -0
  337. data/public/javascripts/draw_method.js +83 -0
  338. data/public/javascripts/excanvas.js +704 -0
  339. data/public/javascripts/function.js +107 -0
  340. data/public/javascripts/gfdnavi.js +175 -0
  341. data/public/javascripts/knowledge.js +384 -0
  342. data/public/javascripts/mapsearch.js +313 -0
  343. data/public/javascripts/progress.js +42 -0
  344. data/public/javascripts/resizable_box.js +164 -0
  345. data/public/javascripts/slider.js +260 -0
  346. data/public/javascripts/tab.js +17 -0
  347. data/public/javascripts/work_flow.js +452 -0
  348. data/public/stylesheets/analysis.css +111 -0
  349. data/public/stylesheets/description.css +71 -0
  350. data/public/stylesheets/gfdnavi.css +141 -0
  351. data/public/stylesheets/knowledge.css +218 -0
  352. data/public/stylesheets/search.css +184 -0
  353. data/public/stylesheets/tree.css +45 -0
  354. data/public/stylesheets/tree_for_ie.css +3 -0
  355. data/public/stylesheets/work_flow.css +78 -0
  356. data/script/cleaner +11 -0
  357. data/script/server_ssl +131 -0
  358. data/test/fixtures/diagram_cache_data.yml +5 -0
  359. data/test/fixtures/diagram_cache_sessions.yml +6 -0
  360. data/test/fixtures/diagram_caches.yml +6 -0
  361. data/test/fixtures/directories.yml +57 -0
  362. data/test/fixtures/draw_parameters.yml +6 -0
  363. data/test/fixtures/function_arguments.yml +15 -0
  364. data/test/fixtures/function_outputs.yml +15 -0
  365. data/test/fixtures/functions.yml +29 -0
  366. data/test/fixtures/group_members.yml +33 -0
  367. data/test/fixtures/groups.yml +25 -0
  368. data/test/fixtures/images.yml +12 -0
  369. data/test/fixtures/keyword_attributes.yml +73 -0
  370. data/test/fixtures/knowledges.yml +10 -0
  371. data/test/fixtures/node_relations.yml +11 -0
  372. data/test/fixtures/nodes.yml +298 -0
  373. data/test/fixtures/sign_up_users.yml +8 -0
  374. data/test/fixtures/spatial_and_time_attributes.yml +29 -0
  375. data/test/fixtures/user_mailer/authorization_inform +11 -0
  376. data/test/fixtures/user_mailer/signup_accepted +10 -0
  377. data/test/fixtures/user_mailer/signup_confirm +17 -0
  378. data/test/fixtures/user_mailer/signup_inform +10 -0
  379. data/test/fixtures/user_mailer/signup_rejected +9 -0
  380. data/test/fixtures/users.yml +31 -0
  381. data/test/fixtures/value_types.yml +10 -0
  382. data/test/fixtures/variables.yml +17 -0
  383. data/test/functional/analysis_controller_test.rb +169 -0
  384. data/test/functional/description_controller_test.rb +18 -0
  385. data/test/functional/function_controller_test.rb +18 -0
  386. data/test/functional/group_controller_test.rb +18 -0
  387. data/test/functional/search_controller_test.rb +83 -0
  388. data/test/functional/user_controller_test.rb +77 -0
  389. data/test/functional/webservice_analysis_api_test.rb +12 -0
  390. data/test/functional/work_flow_controller_test.rb +18 -0
  391. data/test/test_helper.rb +28 -0
  392. data/test/unit/diagram_cache_datum_test.rb +10 -0
  393. data/test/unit/diagram_cache_session_test.rb +10 -0
  394. data/test/unit/diagram_cache_test.rb +10 -0
  395. data/test/unit/directory_test.rb +49 -0
  396. data/test/unit/draw_parameter_test.rb +10 -0
  397. data/test/unit/function_argument_test.rb +10 -0
  398. data/test/unit/function_output_test.rb +10 -0
  399. data/test/unit/function_test.rb +10 -0
  400. data/test/unit/group_test.rb +48 -0
  401. data/test/unit/image_test.rb +13 -0
  402. data/test/unit/keyword_attribute_test.rb +33 -0
  403. data/test/unit/knowledge_test.rb +13 -0
  404. data/test/unit/node_relation_test.rb +20 -0
  405. data/test/unit/node_test.rb +85 -0
  406. data/test/unit/sign_up_user_test.rb +20 -0
  407. data/test/unit/spatial_and_time_attribute_test.rb +29 -0
  408. data/test/unit/user_mailer_test.rb +101 -0
  409. data/test/unit/user_test.rb +134 -0
  410. data/test/unit/value_type_test.rb +10 -0
  411. data/test/unit/variable_test.rb +35 -0
  412. data/vendor/plugins/acts_as_list/README +23 -0
  413. data/vendor/plugins/acts_as_list/init.rb +3 -0
  414. data/vendor/plugins/acts_as_list/lib/active_record/acts/list.rb +256 -0
  415. data/vendor/plugins/acts_as_list/test/list_test.rb +332 -0
  416. data/vendor/plugins/acts_as_tree/README +26 -0
  417. data/vendor/plugins/acts_as_tree/Rakefile +22 -0
  418. data/vendor/plugins/acts_as_tree/init.rb +1 -0
  419. data/vendor/plugins/acts_as_tree/lib/active_record/acts/tree.rb +96 -0
  420. data/vendor/plugins/acts_as_tree/test/abstract_unit.rb +0 -0
  421. data/vendor/plugins/acts_as_tree/test/acts_as_tree_test.rb +219 -0
  422. data/vendor/plugins/acts_as_tree/test/database.yml +0 -0
  423. data/vendor/plugins/acts_as_tree/test/fixtures/mixin.rb +0 -0
  424. data/vendor/plugins/acts_as_tree/test/fixtures/mixins.yml +0 -0
  425. data/vendor/plugins/acts_as_tree/test/schema.rb +0 -0
  426. data/vendor/plugins/will_paginate/CHANGELOG +92 -0
  427. data/vendor/plugins/will_paginate/LICENSE +18 -0
  428. data/vendor/plugins/will_paginate/README.rdoc +131 -0
  429. data/vendor/plugins/will_paginate/Rakefile +62 -0
  430. data/vendor/plugins/will_paginate/examples/apple-circle.gif +0 -0
  431. data/vendor/plugins/will_paginate/examples/index.haml +69 -0
  432. data/vendor/plugins/will_paginate/examples/index.html +92 -0
  433. data/vendor/plugins/will_paginate/examples/pagination.css +90 -0
  434. data/vendor/plugins/will_paginate/examples/pagination.sass +91 -0
  435. data/vendor/plugins/will_paginate/init.rb +1 -0
  436. data/vendor/plugins/will_paginate/lib/will_paginate.rb +86 -0
  437. data/vendor/plugins/will_paginate/lib/will_paginate/array.rb +16 -0
  438. data/vendor/plugins/will_paginate/lib/will_paginate/collection.rb +145 -0
  439. data/vendor/plugins/will_paginate/lib/will_paginate/core_ext.rb +32 -0
  440. data/vendor/plugins/will_paginate/lib/will_paginate/finder.rb +247 -0
  441. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope.rb +132 -0
  442. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb +39 -0
  443. data/vendor/plugins/will_paginate/lib/will_paginate/version.rb +9 -0
  444. data/vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb +373 -0
  445. data/vendor/plugins/will_paginate/will_paginate.gemspec +21 -0
  446. metadata +586 -0
@@ -0,0 +1,184 @@
1
+ .map_keyword {
2
+ padding-top: 1em;
3
+ padding-bottom: 1em;
4
+ color: white;
5
+ text-align: center;
6
+ font: larger sans-serif;
7
+ background: #5555ff;
8
+ }
9
+ .map_menu {
10
+ color: white;
11
+ font: larger sans-serif;
12
+ background: #5555ff;
13
+ }
14
+ .map_submenu {
15
+ font: larger sans-serif;
16
+ background: #bbccff;
17
+ }
18
+
19
+ .list_title {
20
+ font-size: 140%;
21
+ font-weight: bold;
22
+ text-decoration: underline;
23
+ }
24
+
25
+ .list_knowledge_path {
26
+ color: green;
27
+ font-size: 80%;
28
+ }
29
+
30
+ .list_textbody {
31
+ table-layout: fixed;
32
+ width=500pt;
33
+ }
34
+
35
+ .pagination {
36
+ padding: 3px;
37
+ margin: 3px;
38
+ }
39
+ .pagination a {
40
+ padding: 2px 5px 2px 5px;
41
+ margin: 2px;
42
+ border: 1px solid #aaaadd;
43
+ text-decoration: none;
44
+ color: #000099;
45
+ }
46
+ .pagination a:hover, .pagination a:active {
47
+ border: 1px solid #000099;
48
+ color: #000;
49
+ }
50
+ .pagination span.current {
51
+ padding: 2px 5px 2px 5px;
52
+ margin: 2px;
53
+ border: 1px solid #000099;
54
+ font-weight: bold;
55
+ background-color: #000099;
56
+ color: #FFF;
57
+ }
58
+ .pagination span.disabled {
59
+ padding: 2px 5px 2px 5px;
60
+ margin: 2px;
61
+ border: 1px solid #eee;
62
+ color: #ddd;
63
+ }
64
+
65
+ h1.davis {
66
+ background-color: #9999FF;
67
+ color: #FFFFFF;
68
+ font-family: "times roman", verdana, sans-serif;
69
+ text-align: center;
70
+ border-top: 4px solid;
71
+ border-bottom: 4px solid;
72
+ border-color: #0099ff;
73
+ line-height: 100%;
74
+ }
75
+
76
+ h2.davis, h3.davis, h4.davis, h5.davis, h6.davis {
77
+ font-family: verdana, arial, helvetica, Sans-Serif;
78
+ }
79
+
80
+ h2.davis {
81
+ border-left: #9999ff 0.6em solid;
82
+ border-bottom: #0099ff 5px solid;
83
+ margin-right: 30%;
84
+ }
85
+
86
+ h3.davis {
87
+ color: #003366;
88
+ border-bottom: #000066 1px solid;
89
+ margin-right: 35%;
90
+ margin-top:2ex;
91
+ margin-bottom:0ex;
92
+ margin-left: 0.5em;
93
+ }
94
+
95
+ h4.davis {
96
+ margin-left: 1.0em;
97
+ text-decoration: underline;
98
+ }
99
+
100
+ ul.davis {
101
+ margin-left: 3em;
102
+ padding: 0;
103
+ }
104
+
105
+ li.davis {
106
+ line-height: 150%;
107
+ }
108
+
109
+ p.davis {
110
+ margin-left: 2em;
111
+ }
112
+
113
+ em.davis {
114
+ color: #004080;
115
+ font-family: arial, helvetica, Sans-Serif, gothic;
116
+ font-style: normal;
117
+ font-variant: normal;
118
+ font-weight: bold;
119
+ }
120
+
121
+ pre.davis {
122
+ line-height: 100%;
123
+ border-right: #646464 1px solid;
124
+ padding-right: 0.5em;
125
+ border-top: #646464 1px solid;
126
+ padding-top: 0.5em;
127
+ border-left: #646464 1px solid;
128
+ padding-left: 0.5em;
129
+ border-bottom: #646464 1px solid;
130
+ padding-bottom: 0.5em;
131
+ margin-left: 2em;
132
+ margin-right: 2em;
133
+ white-space: pre;
134
+ background-color: #e6e6e6;
135
+ color: black;
136
+ }
137
+
138
+
139
+ //copy of knowledge
140
+ .show_comment_buttons {
141
+ cursor: pointer;
142
+ border-color: black;
143
+ border-width: 3px;
144
+ background-color: #CCCCCC;
145
+ }
146
+
147
+ .on_buttons_in_list {
148
+ cursor: pointer;
149
+ border: solid 1px black;
150
+ color: black;
151
+ }
152
+
153
+ .off_buttons_in_list {
154
+ cursor: pointer;
155
+ border: solid 1px #CCCCCC;
156
+ color: gray;
157
+ }
158
+
159
+ .space_td {
160
+ width: 10px;
161
+ }
162
+
163
+ .list_title {
164
+ font-size: 140%;
165
+ font-weight: bold;
166
+ text-decoration: underline;
167
+ }
168
+
169
+ .comment_list_table {
170
+ //width: 80%;
171
+ border: solid 1pt orange;
172
+ background-color: #F5F5F5;
173
+ }
174
+
175
+ .comment_list_td {
176
+ border: solid 1pt orange;
177
+ background-color: #F5F5F5;
178
+ }
179
+
180
+ .comment_list_title {
181
+ font-weight: bold;
182
+ text-decoration: underline;
183
+ }
184
+
@@ -0,0 +1,45 @@
1
+ #dir {
2
+ border: solid;
3
+ border-width: 1px;
4
+ }
5
+ #dir_tree {
6
+ float: left;
7
+ overflow: auto;
8
+ }
9
+ #dir_tree_float {
10
+ padding-left: 10px;
11
+ padding-bottom: 10px;
12
+ padding-right: 10px;
13
+ }
14
+ #dir_details {
15
+ overflow: auto;
16
+ }
17
+ #dir_help {
18
+ padding: 5px;
19
+ }
20
+ #details_window {
21
+ border: solid;
22
+ border-width: 1px;
23
+ min-height: 10em;
24
+ padding: 5px;
25
+ }
26
+
27
+ .tree {
28
+ font-size: 12pt;
29
+ vertical-align: middle;
30
+ }
31
+
32
+ .path {
33
+ border-bottom: solid;
34
+ border-width: 1px;
35
+ padding: 3px;
36
+ }
37
+
38
+ .path_text {
39
+ font-weight: bold;
40
+ }
41
+
42
+ .selected {
43
+ background-color: blue;
44
+ color: white;
45
+ }
@@ -0,0 +1,3 @@
1
+ #dir_details {
2
+ width: 100%;
3
+ }
@@ -0,0 +1,78 @@
1
+ .entity {
2
+ border: thin solid;
3
+ padding: 5px;
4
+ cursor: move;
5
+ }
6
+ .plug {
7
+ background-color: blue;
8
+ border: thin solid;
9
+ width: 10px;
10
+ height: 10px;
11
+ cursor: pointer;
12
+ overflow: hidden;
13
+ }
14
+ .plug_hover {
15
+ border-color: red;
16
+ }
17
+ .connector {
18
+ float: left;
19
+ background-color: blue;
20
+ border: thin solid;
21
+ width: 8px;
22
+ height: 8px;
23
+ cursor: pointer;
24
+ overflow: hidden;
25
+ }
26
+
27
+ .delete {
28
+ background-color: white;
29
+ border: 0;
30
+ cursor: pointer;
31
+ }
32
+
33
+ .link {
34
+ text-decoration: underline;
35
+ cursor: pointer;
36
+ }
37
+
38
+ .title {
39
+ text-align: center;
40
+ font-size: large;
41
+ font-weight:bold;
42
+ margin-bottom: 10px;
43
+ margin: 3px;
44
+ }
45
+ .list_box {
46
+ float: left;
47
+ margin: 10px;
48
+ }
49
+ .list {
50
+ border: thin solid;
51
+ width: 100%;
52
+ height: 500;
53
+ margin-bottom: 10px;
54
+ padding: 3px;
55
+ overflow: auto;
56
+ }
57
+
58
+ .selected {
59
+ color: blue;
60
+ }
61
+
62
+ #canvas_chart {
63
+ margin-bottom: 10px;
64
+ }
65
+
66
+ #canvas_div {
67
+ }
68
+
69
+ #canvas {
70
+ border: thin solid;
71
+ }
72
+
73
+ #form_div {
74
+ float: left;
75
+ border: thin solid;
76
+ overflow: auto;
77
+ padding: 5px;
78
+ }
data/script/cleaner ADDED
@@ -0,0 +1,11 @@
1
+ #!/usr/bin/env ruby
2
+ require "find"
3
+ include Find
4
+
5
+ top = File.dirname(__FILE__) + '/..'
6
+ Dir.chdir( top )
7
+
8
+ print "cleaning tmp/ and public/diagram/ ...\n"
9
+ system('rm -f `find tmp/sessions tmp/work public/diagrams -atime +1 -type f -print`')
10
+ system('rm -fr `find tmp/work/* public/diagrams/* -type d -empty -print`')
11
+
data/script/server_ssl ADDED
@@ -0,0 +1,131 @@
1
+ #!/usr/bin/env ruby
2
+ require File.dirname(__FILE__) + '/../config/boot'
3
+
4
+ require 'active_support'
5
+ require 'fileutils'
6
+
7
+ puts "=> Booting WEBrick..."
8
+
9
+ %w(cache pids sessions sockets).each { |dir_to_make| FileUtils.mkdir_p(File.join(RAILS_ROOT, 'tmp', dir_to_make)) }
10
+
11
+ require 'webrick'
12
+ require 'webrick/https'
13
+ require 'optparse'
14
+
15
+ OPTIONS = {
16
+ :port => 3000,
17
+ :ip => "0.0.0.0",
18
+ :environment => (ENV['RAILS_ENV'] || "development").dup,
19
+ :server_root => File.expand_path(RAILS_ROOT + "/public/"),
20
+ :server_type => WEBrick::SimpleServer,
21
+ :charset => "UTF-8",
22
+ :mime_types => WEBrick::HTTPUtils::DefaultMimeTypes
23
+ }
24
+
25
+ ARGV.options do |opts|
26
+ script_name = File.basename($0)
27
+ opts.banner = "Usage: ruby #{script_name} [options]"
28
+
29
+ opts.separator ""
30
+
31
+ opts.on("-p", "--port=port", Integer,
32
+ "Runs Rails on the specified port.",
33
+ "Default: 3000") { |v| OPTIONS[:port] = v }
34
+ opts.on("-b", "--binding=ip", String,
35
+ "Binds Rails to the specified ip.",
36
+ "Default: 0.0.0.0") { |v| OPTIONS[:ip] = v }
37
+ opts.on("-e", "--environment=name", String,
38
+ "Specifies the environment to run this server under (test/development/production).",
39
+ "Default: development") { |v| OPTIONS[:environment] = v }
40
+ opts.on("-m", "--mime-types=filename", String,
41
+ "Specifies an Apache style mime.types configuration file to be used for mime types",
42
+ "Default: none") { |mime_types_file| OPTIONS[:mime_types] = WEBrick::HTTPUtils::load_mime_types(mime_types_file) }
43
+
44
+ opts.on("-d", "--daemon",
45
+ "Make Rails run as a Daemon (only works if fork is available -- meaning on *nix)."
46
+ ) { OPTIONS[:server_type] = WEBrick::Daemon }
47
+
48
+ opts.on("-c", "--charset=charset", String,
49
+ "Set default charset for output.",
50
+ "Default: UTF-8") { |v| OPTIONS[:charset] = v }
51
+
52
+ opts.separator ""
53
+
54
+ opts.on("-h", "--help",
55
+ "Show this help message.") { puts opts; exit }
56
+
57
+ opts.parse!
58
+ end
59
+
60
+ ENV["RAILS_ENV"] = OPTIONS[:environment]
61
+ RAILS_ENV.replace(OPTIONS[:environment]) if defined?(RAILS_ENV)
62
+
63
+ require RAILS_ROOT + "/config/environment"
64
+ require 'webrick_server'
65
+
66
+ OPTIONS['working_directory'] = File.expand_path(RAILS_ROOT)
67
+
68
+ puts "=> Rails application started on https://#{OPTIONS[:ip]}:#{OPTIONS[:port]}"
69
+ puts "=> Ctrl-C to shutdown server; call with --help for options" if OPTIONS[:server_type] == WEBrick::SimpleServer
70
+
71
+ class SSLDispatchServlet < DispatchServlet
72
+ def self.dispatch(options={})
73
+
74
+ Socket.do_not_reverse_lookup = true
75
+
76
+ # keys for localhost
77
+ ssl_certificate = <<"EOS"
78
+ -----BEGIN CERTIFICATE-----
79
+ MIICTTCCAbagAwIBAwIBADANBgkqhkiG9w0BAQUFADAUMRIwEAYDVQQDDAlsb2Nh
80
+ bGhvc3QwHhcNMDcxMTEwMDUyMDEyWhcNMDgxMTA5MDUyMDEyWjAUMRIwEAYDVQQD
81
+ DAlsb2NhbGhvc3QwgZ8wDQYJKoZIhvcNAQEBBQADgY0AMIGJAoGBALSGK8VpvJ2F
82
+ 2eshxjBhV0dygEZcweC3j9k82M4XdsxDwjYS5L0dlKuU+U2RP0eBc3nV/K6rj3ex
83
+ 6gqKRmz4Zwp04/v436HmOKDxsvQlYJl0nW1fagOF1EBFnCvd4d6mfrJ85OtLLbt9
84
+ X9OnaE4QESKK7hS0mk3PJspfddtLbGTzAgMBAAGjga4wgaswCQYDVR0TBAIwADAL
85
+ BgNVHQ8EBAMCBSAwHQYDVR0OBBYEFISoThjAnWOubNstBC2ExZEK28tnMBMGA1Ud
86
+ JQQMMAoGCCsGAQUFBwMBMB8GCWCGSAGG+EIBDQQSFhB0ZXN0IGNlcnRpZmljYXRl
87
+ MDwGA1UdIwQ1MDOAFISoThjAnWOubNstBC2ExZEK28tnoRikFjAUMRIwEAYDVQQD
88
+ DAlsb2NhbGhvc3SCAQAwDQYJKoZIhvcNAQEFBQADgYEAnfJCvwemcW4DnSQ6SLWV
89
+ oZrrEL87KjuAXYxxrfIhyb2i4FD4p1R4kAy8xX884Egcy0LdH+7UCAA7TuVz7Ye+
90
+ NIcTlvimQUgPx+8kZPxmKou8TKEtOuf8Lkjq/s81uE3QUoiI3JeInT66knCIMLgE
91
+ m8NObj4uxBQYJ4fy7CTCGiM=
92
+ -----END CERTIFICATE-----
93
+ EOS
94
+ ssl_private_key = <<"EOS"
95
+ -----BEGIN RSA PRIVATE KEY-----
96
+ MIICWwIBAAKBgQC0hivFabydhdnrIcYwYVdHcoBGXMHgt4/ZPNjOF3bMQ8I2EuS9
97
+ HZSrlPlNkT9HgXN51fyuq493seoKikZs+GcKdOP7+N+h5jig8bL0JWCZdJ1tX2oD
98
+ hdRARZwr3eHepn6yfOTrSy27fV/Tp2hOEBEiiu4UtJpNzybKX3XbS2xk8wIDAQAB
99
+ AoGAHZE0LhtJZ0t7C8X2Xgozb2JTnDKpFpM6HkyW/fpd3MrkTlL93/OuXAQEaS32
100
+ /VE4hqYDwuAamXIscRmAu2xcA9XQtxj1Y+FGVD3P/vB0UtboOVEz0gn/98Y1u2G/
101
+ b+L4PCxwU6cN1boFGKX+J97ps1fOMMMz2xoCmy88J9mKpCECQQDnaqbRs+2cqcFZ
102
+ jzA9po+dBM13etTfqAeKH9Wu/MBeo0wft8OHQYGxK5TQcxQdfG82U5L/JmMsXZjL
103
+ N9B8dkQrAkEAx7OA5pMkpmxBa96Ve8EE8pGDHArFMO29ztz7/zlpNLoUKaZO8N4K
104
+ Y3ALQE48WtAsyJ5PHV+7j21YRERcPNkWWQJAUlr/MSPiTN2QxKmTlm0fMNcTtBCP
105
+ j2TCAiLgLd0fLM7aeXMxb4IdgIqs9B3wK6or/d5yMsFbi99nT/L2DEUebwJAZVxG
106
+ 4MFuqMnpqsafOOEPkc8prOIKlHsXDBg+D50kOQ75jOpMxxTsUOxdyZXsLGvdTzaL
107
+ EW211Wa6lmvcJUZKgQJAPkNLxolcBgz+4QE2jqVvdbmxDIydOzPDeC3AJCUa7KUI
108
+ lTbn0L2reQGmdCkfBXcPt1Bs8Ub6zcSx0HDDKtykYQ==
109
+ -----END RSA PRIVATE KEY-----
110
+ EOS
111
+
112
+ params = {:Port => options[:port].to_i,
113
+ :ServerType => options[:server_type],
114
+ :BindAddress => options[:ip],
115
+ :SSLEnable => true,
116
+ :SSLCertificate => OpenSSL::X509::Certificate.new(ssl_certificate),
117
+ :SSLPrivateKey => OpenSSL::PKey::RSA.new(ssl_private_key)
118
+ # :SSLVerifyClient => OpenSSL::SSL::VERIFY_NONE,
119
+ # :SSLCertName => [ ["CN", WEBrick::Utils::getservername ]]
120
+ }
121
+ params[:MimeTypes] = options[:mime_types] if options[:mime_types]
122
+
123
+ server = WEBrick::HTTPServer.new(params)
124
+ server.mount('/', DispatchServlet, options)
125
+ trap("INT") { server.shutdown }
126
+ server.start
127
+ end
128
+ end
129
+
130
+
131
+ SSLDispatchServlet.dispatch(OPTIONS)