gfdnavi 1.3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (446) hide show
  1. data/ChangeLog +10949 -0
  2. data/LICENCE.txt +57 -0
  3. data/Makefile +18 -0
  4. data/TODO +132 -0
  5. data/app/controllers/analysis_controller.rb +700 -0
  6. data/app/controllers/application.rb +41 -0
  7. data/app/controllers/draw_method_controller.rb +172 -0
  8. data/app/controllers/explorer_controller.rb +197 -0
  9. data/app/controllers/finder_controller.rb +331 -0
  10. data/app/controllers/function_controller.rb +204 -0
  11. data/app/controllers/group_controller.rb +115 -0
  12. data/app/controllers/keyword_attributes_controller.rb +52 -0
  13. data/app/controllers/knowledge_controller.rb +928 -0
  14. data/app/controllers/nodes_controller.rb +515 -0
  15. data/app/controllers/search_controller.rb +341 -0
  16. data/app/controllers/user_controller.rb +337 -0
  17. data/app/helpers/analysis_helper.rb +2 -0
  18. data/app/helpers/application_helper.rb +105 -0
  19. data/app/helpers/description_helper.rb +2 -0
  20. data/app/helpers/function_helper.rb +2 -0
  21. data/app/helpers/group_helper.rb +2 -0
  22. data/app/helpers/search_helper.rb +3 -0
  23. data/app/helpers/user_helper.rb +2 -0
  24. data/app/helpers/work_flow_helper.rb +92 -0
  25. data/app/models/actual_file.rb +3 -0
  26. data/app/models/analysis.rb +715 -0
  27. data/app/models/analysis_history.rb +42 -0
  28. data/app/models/cross_array.rb +22 -0
  29. data/app/models/cross_result.rb +254 -0
  30. data/app/models/derived_spatial_attribute.rb +3 -0
  31. data/app/models/diagram_cache.rb +16 -0
  32. data/app/models/diagram_cache_datum.rb +4 -0
  33. data/app/models/diagram_cache_session.rb +8 -0
  34. data/app/models/directory.rb +21 -0
  35. data/app/models/draw_method.rb +48 -0
  36. data/app/models/draw_method_attribute.rb +8 -0
  37. data/app/models/draw_parameter.rb +12 -0
  38. data/app/models/explorer_query.rb +354 -0
  39. data/app/models/explorer_result.rb +312 -0
  40. data/app/models/function.rb +75 -0
  41. data/app/models/function_argument.rb +6 -0
  42. data/app/models/function_output.rb +4 -0
  43. data/app/models/group.rb +153 -0
  44. data/app/models/image.rb +20 -0
  45. data/app/models/keyword_attribute.rb +179 -0
  46. data/app/models/knowledge.rb +94 -0
  47. data/app/models/knowledge_backup.rb +32 -0
  48. data/app/models/knowledge_figure.rb +16 -0
  49. data/app/models/knowledge_figure_backup.rb +16 -0
  50. data/app/models/knowledge_parser.rb +392 -0
  51. data/app/models/node.rb +605 -0
  52. data/app/models/node_entity_abstract.rb +112 -0
  53. data/app/models/node_lineage.rb +6 -0
  54. data/app/models/node_relation.rb +4 -0
  55. data/app/models/path_node.rb +60 -0
  56. data/app/models/query.rb +193 -0
  57. data/app/models/query_history.rb +12 -0
  58. data/app/models/results.rb +48 -0
  59. data/app/models/sign_up_user.rb +25 -0
  60. data/app/models/spatial_and_time_attribute.rb +11 -0
  61. data/app/models/user.rb +115 -0
  62. data/app/models/user_mailer.rb +48 -0
  63. data/app/models/value_type.rb +3 -0
  64. data/app/models/variable.rb +70 -0
  65. data/app/models/virtual_node.rb +457 -0
  66. data/app/views/analysis/__help_analysis_tab.en.html +57 -0
  67. data/app/views/analysis/__help_draw_share.en.html +12 -0
  68. data/app/views/analysis/__help_draw_tab.en.html +6 -0
  69. data/app/views/analysis/_analysis_function_settings.rhtml +61 -0
  70. data/app/views/analysis/_analysis_settings.rhtml +28 -0
  71. data/app/views/analysis/_diagram.rhtml +70 -0
  72. data/app/views/analysis/_dimension_option.rhtml +59 -0
  73. data/app/views/analysis/_draw_general_settings.rhtml +217 -0
  74. data/app/views/analysis/_draw_settings.rhtml +73 -0
  75. data/app/views/analysis/_history.rhtml +19 -0
  76. data/app/views/analysis/_popular_diagrams.rhtml +42 -0
  77. data/app/views/analysis/_save_form.rhtml +44 -0
  78. data/app/views/analysis/_variables.rhtml +66 -0
  79. data/app/views/analysis/_variables_order.rhtml +56 -0
  80. data/app/views/analysis/index.rhtml +195 -0
  81. data/app/views/analysis/preview.rhtml +3 -0
  82. data/app/views/analysis/save.rhtml +73 -0
  83. data/app/views/analysis/show_diagram.rhtml +42 -0
  84. data/app/views/cross/_display_map.rhtml +201 -0
  85. data/app/views/cross/_result.rhtml +205 -0
  86. data/app/views/cross/_show_result_tree.rhtml +40 -0
  87. data/app/views/cross/_show_results.rhtml +80 -0
  88. data/app/views/cross/_style.rhtml +21 -0
  89. data/app/views/cross/index.rhtml +271 -0
  90. data/app/views/draw_method/_edit_form.rhtml +110 -0
  91. data/app/views/draw_method/create.rhtml +8 -0
  92. data/app/views/draw_method/details.rhtml +113 -0
  93. data/app/views/draw_method/edit.rhtml +8 -0
  94. data/app/views/draw_method/list.rhtml +80 -0
  95. data/app/views/explorer/_display_map.rhtml +199 -0
  96. data/app/views/explorer/_show_result_tree.rhtml +40 -0
  97. data/app/views/explorer/_show_results.rhtml +101 -0
  98. data/app/views/explorer/_style.rhtml +21 -0
  99. data/app/views/explorer/index.rhtml +214 -0
  100. data/app/views/finder/_children.html.erb +84 -0
  101. data/app/views/finder/_children_details.html.erb +74 -0
  102. data/app/views/finder/_children_details_tr.html.erb +196 -0
  103. data/app/views/finder/create_tree.html.erb +15 -0
  104. data/app/views/finder/flex.html.erb +52 -0
  105. data/app/views/finder/index.html.erb +47 -0
  106. data/app/views/finder/show_details.html.erb +3 -0
  107. data/app/views/finder/show_images.html.erb +3 -0
  108. data/app/views/function/_edit_form.rhtml +106 -0
  109. data/app/views/function/create.rhtml +8 -0
  110. data/app/views/function/details.rhtml +96 -0
  111. data/app/views/function/edit.rhtml +8 -0
  112. data/app/views/function/list.rhtml +80 -0
  113. data/app/views/group/add_member.rhtml +13 -0
  114. data/app/views/group/change_owner.rhtml +15 -0
  115. data/app/views/group/create.rhtml +11 -0
  116. data/app/views/group/delete_member.rhtml +14 -0
  117. data/app/views/group/list.rhtml +63 -0
  118. data/app/views/knowledge/_backup.rhtml +135 -0
  119. data/app/views/knowledge/_category.rhtml +58 -0
  120. data/app/views/knowledge/_category_list.rhtml +34 -0
  121. data/app/views/knowledge/_category_table.rhtml +23 -0
  122. data/app/views/knowledge/_comment.rhtml +64 -0
  123. data/app/views/knowledge/_comment_input_form.rhtml +19 -0
  124. data/app/views/knowledge/_comments.rhtml +84 -0
  125. data/app/views/knowledge/_form.rhtml +139 -0
  126. data/app/views/knowledge/_group_figure_form.rhtml +187 -0
  127. data/app/views/knowledge/_layout_figure.rhtml +61 -0
  128. data/app/views/knowledge/_layout_figures_in_a_row_above_text.rhtml +42 -0
  129. data/app/views/knowledge/_layout_figures_under_text.rhtml +45 -0
  130. data/app/views/knowledge/_layout_one_figure_above_text.rhtml +28 -0
  131. data/app/views/knowledge/_summary.rhtml +21 -0
  132. data/app/views/knowledge/edit.rhtml +37 -0
  133. data/app/views/knowledge/list.rhtml +287 -0
  134. data/app/views/knowledge/new.rhtml +23 -0
  135. data/app/views/knowledge/new_from_analysis.rhtml +21 -0
  136. data/app/views/knowledge/show.rhtml +196 -0
  137. data/app/views/layouts/gfdnavi.rhtml +105 -0
  138. data/app/views/nodes/_ancestors.html.erb +89 -0
  139. data/app/views/nodes/_description_methods_table.html.erb +75 -0
  140. data/app/views/nodes/_mode.html.erb +16 -0
  141. data/app/views/nodes/description.html.erb +181 -0
  142. data/app/views/nodes/description_methods.html.erb +1 -0
  143. data/app/views/nodes/edit.html.erb +73 -0
  144. data/app/views/nodes/index.html.erb +25 -0
  145. data/app/views/nodes/show.html.erb +20 -0
  146. data/app/views/search/_children_details_mapsearch.rhtml +68 -0
  147. data/app/views/search/_children_details_tr.rhtml +205 -0
  148. data/app/views/search/_show_grouplist.rhtml +74 -0
  149. data/app/views/search/_show_results.rhtml +43 -0
  150. data/app/views/search/_show_results_global.rhtml +36 -0
  151. data/app/views/search/_show_results_partial.rhtml +39 -0
  152. data/app/views/search/_show_results_partial_groupbyfile.rhtml +50 -0
  153. data/app/views/search/_show_variablelist.rhtml +28 -0
  154. data/app/views/search/mapsearch.rhtml +176 -0
  155. data/app/views/search/remapsearch.rjs +18 -0
  156. data/app/views/search/show_details.rhtml +3 -0
  157. data/app/views/user/add_user.rhtml +30 -0
  158. data/app/views/user/change_password.rhtml +25 -0
  159. data/app/views/user/edit.html.erb +50 -0
  160. data/app/views/user/index.rhtml +162 -0
  161. data/app/views/user/login.rhtml +41 -0
  162. data/app/views/user/logout.rhtml +4 -0
  163. data/app/views/user/signup.rhtml +36 -0
  164. data/app/views/user/signup_succeeded.rhtml +36 -0
  165. data/app/views/user_mailer/authorization_inform.rhtml +15 -0
  166. data/app/views/user_mailer/signup_accepted.rhtml +12 -0
  167. data/app/views/user_mailer/signup_confirm.rhtml +14 -0
  168. data/app/views/user_mailer/signup_inform.rhtml +13 -0
  169. data/app/views/user_mailer/signup_rejected.rhtml +11 -0
  170. data/app/views/work_flow/_push_wsdls.rhtml +55 -0
  171. data/app/views/work_flow/index.rhtml +46 -0
  172. data/config/database.yml.example +35 -0
  173. data/config/environment.rb +68 -0
  174. data/config/gfdnavi.yml.example +95 -0
  175. data/config/load_config.rb +151 -0
  176. data/config/routes.rb +35 -0
  177. data/consistency_checker.rb +129 -0
  178. data/data/gfdnavi_docs/how_to_draw_multiple_images.knlge +68 -0
  179. data/data/gfdnavi_docs/how_to_knowledge.knlge +138 -0
  180. data/data/gfdnavi_docs/how_to_write_document_about_Gfdnavi.knlge +30 -0
  181. data/data/samples/jmadata.SIGEN +8 -0
  182. data/data/samples/jmadata.yml +6 -0
  183. data/data/samples/jmadata/MSM-P/2006.nc.yml +2 -0
  184. data/data/samples/jmadata/MSM-P/2006.yml +17 -0
  185. data/data/samples/jmadata/MSM-P/2006/0101.nc +0 -0
  186. data/data/samples/jmadata/MSM-P/2006/0101.nc.yml +13 -0
  187. data/data/samples/jmadata/MSM-P/2006/0102.nc +0 -0
  188. data/data/samples/jmadata/MSM-P/2006/0103.nc +0 -0
  189. data/data/samples/jmadata/MSM-P/2006/0104.nc +0 -0
  190. data/data/samples/jmadata/MSM-P/2006/0105.nc +0 -0
  191. data/data/samples/jmadata/MSM-P/2006/010[1-3].nc.yml +2 -0
  192. data/data/samples/jmadata/MSM-P/2006/skip_data.rb +96 -0
  193. data/data/samples/jmadata/MSM-P/2006/skip_data.sh +6 -0
  194. data/data/samples/reanalysis.SIGEN +8 -0
  195. data/data/samples/reanalysis/era40.SIGEN +8 -0
  196. data/data/samples/reanalysis/era40.yml +2 -0
  197. data/data/samples/reanalysis/era40/t.jan.nc +0 -0
  198. data/data/samples/reanalysis/era40/t.jan.nc.yml +1 -0
  199. data/data/samples/reanalysis/ncep.SIGEN +9 -0
  200. data/data/samples/reanalysis/ncep/T.jan.100hPa.png +0 -0
  201. data/data/samples/reanalysis/ncep/T.jan.100hPa.png.yml +43 -0
  202. data/data/samples/reanalysis/ncep/T.jan.nc +0 -0
  203. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc +0 -0
  204. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc.yml +8 -0
  205. data/data/samples/reanalysis/ncep/T.jan_only_root.nc +0 -0
  206. data/data/samples/reanalysis/ncep/T.jan_only_root.nc.yml +4 -0
  207. data/data/samples/reanalysis/ncep/UV.jan.nc +0 -0
  208. data/data/samples/reanalysis/ncep/UV.jan.nc.yml +10 -0
  209. data/data/samples/reanalysis/ncep/UV.jan.nc.yml.ja +11 -0
  210. data/data/samples/sonde_operational.yml +5 -0
  211. data/data/samples/sonde_operational/std_plev.yml +12 -0
  212. data/data/samples/sonde_operational/std_plev/41256.spl.nc +0 -0
  213. data/data/samples/sonde_operational/std_plev/42410.spl.nc +0 -0
  214. data/data/samples/sonde_operational/std_plev/43333.spl.nc +0 -0
  215. data/data/samples/sonde_operational/std_plev/43346.spl.nc +0 -0
  216. data/data/samples/sonde_operational/std_plev/48698.spl.nc +0 -0
  217. data/data/samples/sonde_operational/std_plev/61641.spl.nc +0 -0
  218. data/data/samples/sonde_operational/std_plev/63741.spl.nc +0 -0
  219. data/data/samples/sonde_operational/std_plev/67083.spl.nc +0 -0
  220. data/data/samples/sonde_operational/std_plev/72261.spl.nc +0 -0
  221. data/data/samples/sonde_operational/std_plev/76805.spl.nc +0 -0
  222. data/data/samples/sonde_operational/std_plev/82193.spl.nc +0 -0
  223. data/data/samples/sonde_operational/std_plev/91165.spl.nc +0 -0
  224. data/data/samples/sonde_operational/std_plev/91610.spl.nc +0 -0
  225. data/data/samples/sonde_operational/std_plev/91948.spl.nc +0 -0
  226. data/data/samples/sonde_operational/std_plev/94294.spl.nc +0 -0
  227. data/db/NetCDFparser.rb +406 -0
  228. data/db/create_derived_spatial_attributes.sql +12 -0
  229. data/db/draw_methods/line.yml +6 -0
  230. data/db/draw_methods/scatter.yml +38 -0
  231. data/db/draw_methods/tone.yml +64 -0
  232. data/db/draw_methods/vector.yml +19 -0
  233. data/db/dump_db.rb +43 -0
  234. data/db/functions/additions.yml +10 -0
  235. data/db/functions/cut.yml +10 -0
  236. data/db/functions/division.yml +10 -0
  237. data/db/functions/mean.yml +28 -0
  238. data/db/functions/multiplication.yml +10 -0
  239. data/db/functions/stddev.yml +28 -0
  240. data/db/functions/subtraction.yml +10 -0
  241. data/db/migrate/001_initial_scheme.rb +289 -0
  242. data/db/migrate/002_add_open_id_authentication_tables.rb +20 -0
  243. data/db/register_directory_tree.rb +760 -0
  244. data/db/restore_db.rb +60 -0
  245. data/gfdnavi-install +828 -0
  246. data/install.rb +828 -0
  247. data/lib/activerecord_gfdnavi.rb +31 -0
  248. data/lib/basic_authorization.rb +50 -0
  249. data/lib/create_activeresources.rb +108 -0
  250. data/lib/execute_analysis.rb +472 -0
  251. data/lib/file_gfdnavi.rb +38 -0
  252. data/lib/gphys_gfdnavi.rb +81 -0
  253. data/lib/localdir.rb +110 -0
  254. data/lib/login_system.rb +110 -0
  255. data/lib/multibytes.rb +20 -0
  256. data/lib/narray_yaml.rb +58 -0
  257. data/lib/no_rdb_base.rb +40 -0
  258. data/lib/opendapdir.rb +171 -0
  259. data/lib/tar.rb +127 -0
  260. data/lib/tasks/clean.rake +65 -0
  261. data/lib/tasks/setup.rake +316 -0
  262. data/lib/tasks/update.rake +62 -0
  263. data/lib/vizshot_gfdnavi.rb +224 -0
  264. data/public/crossdomain.xml +4 -0
  265. data/public/flex/NodeTreeDescriptor.as +55 -0
  266. data/public/flex/TreeNode.as +253 -0
  267. data/public/flex/finder.mxml +304 -0
  268. data/public/flex/finder.swf +0 -0
  269. data/public/flex/gfdnavi.mxml +52 -0
  270. data/public/flex/gfdnavi.swf +0 -0
  271. data/public/images/Help_S-shots/dir_tree_with_add.jpg +0 -0
  272. data/public/images/analyze.gif +0 -0
  273. data/public/images/circle.gif +0 -0
  274. data/public/images/create_from_analysis_button.png +0 -0
  275. data/public/images/delete.png +0 -0
  276. data/public/images/down.png +0 -0
  277. data/public/images/drawbutton.gif +0 -0
  278. data/public/images/gfdnavi_home_logo.png +0 -0
  279. data/public/images/gfdnavi_logo_big.png +0 -0
  280. data/public/images/gfdnavi_logo_med.png +0 -0
  281. data/public/images/gfdnavi_logo_mini.png +0 -0
  282. data/public/images/gfdnavi_logo_nobg_big.png +0 -0
  283. data/public/images/gfdnavi_logo_nobg_med.png +0 -0
  284. data/public/images/gfdnavi_logo_nobg_small.png +0 -0
  285. data/public/images/gfdnavi_logo_small.png +0 -0
  286. data/public/images/gfdnavi_logo_xsmall.png +0 -0
  287. data/public/images/hbar.png +0 -0
  288. data/public/images/helpmark16.png +0 -0
  289. data/public/images/helpmark18.png +0 -0
  290. data/public/images/kikyu_g.gif +0 -0
  291. data/public/images/kikyu_r.gif +0 -0
  292. data/public/images/map_icon_g.gif +0 -0
  293. data/public/images/map_icon_r.gif +0 -0
  294. data/public/images/new_knowledge.png +0 -0
  295. data/public/images/openid.png +0 -0
  296. data/public/images/read_in_the_form.png +0 -0
  297. data/public/images/slider_f.gif +0 -0
  298. data/public/images/slider_f_red.gif +0 -0
  299. data/public/images/star1.gif +0 -0
  300. data/public/images/star2.gif +0 -0
  301. data/public/images/startanim.gif +0 -0
  302. data/public/images/stopanim.gif +0 -0
  303. data/public/images/tree/DL.png +0 -0
  304. data/public/images/tree/anal_viz.png +0 -0
  305. data/public/images/tree/analyze_visualize_checked_items.png +0 -0
  306. data/public/images/tree/binary.png +0 -0
  307. data/public/images/tree/details.png +0 -0
  308. data/public/images/tree/download_checked_items.png +0 -0
  309. data/public/images/tree/folder.png +0 -0
  310. data/public/images/tree/folder_close.gif +0 -0
  311. data/public/images/tree/image2.png +0 -0
  312. data/public/images/tree/knowledge.png +0 -0
  313. data/public/images/tree/knowledges.png +0 -0
  314. data/public/images/tree/last.gif +0 -0
  315. data/public/images/tree/last.png +0 -0
  316. data/public/images/tree/minus.gif +0 -0
  317. data/public/images/tree/minus_simple.gif +0 -0
  318. data/public/images/tree/none.gif +0 -0
  319. data/public/images/tree/none.png +0 -0
  320. data/public/images/tree/plus.gif +0 -0
  321. data/public/images/tree/plus_simple.gif +0 -0
  322. data/public/images/tree/show.png +0 -0
  323. data/public/images/tree/show_checked_items.png +0 -0
  324. data/public/images/tree/t.gif +0 -0
  325. data/public/images/tree/t.png +0 -0
  326. data/public/images/tree/tate.gif +0 -0
  327. data/public/images/tree/tate.png +0 -0
  328. data/public/images/up.png +0 -0
  329. data/public/images/vbar.png +0 -0
  330. data/public/images/white.bmp +0 -0
  331. data/public/images/x.gif +0 -0
  332. data/public/index.html +100 -0
  333. data/public/javascripts/AC_OETags.js +269 -0
  334. data/public/javascripts/analysis.js +751 -0
  335. data/public/javascripts/application.js +29 -0
  336. data/public/javascripts/directory_tree.js +102 -0
  337. data/public/javascripts/draw_method.js +83 -0
  338. data/public/javascripts/excanvas.js +704 -0
  339. data/public/javascripts/function.js +107 -0
  340. data/public/javascripts/gfdnavi.js +175 -0
  341. data/public/javascripts/knowledge.js +384 -0
  342. data/public/javascripts/mapsearch.js +313 -0
  343. data/public/javascripts/progress.js +42 -0
  344. data/public/javascripts/resizable_box.js +164 -0
  345. data/public/javascripts/slider.js +260 -0
  346. data/public/javascripts/tab.js +17 -0
  347. data/public/javascripts/work_flow.js +452 -0
  348. data/public/stylesheets/analysis.css +111 -0
  349. data/public/stylesheets/description.css +71 -0
  350. data/public/stylesheets/gfdnavi.css +141 -0
  351. data/public/stylesheets/knowledge.css +218 -0
  352. data/public/stylesheets/search.css +184 -0
  353. data/public/stylesheets/tree.css +45 -0
  354. data/public/stylesheets/tree_for_ie.css +3 -0
  355. data/public/stylesheets/work_flow.css +78 -0
  356. data/script/cleaner +11 -0
  357. data/script/server_ssl +131 -0
  358. data/test/fixtures/diagram_cache_data.yml +5 -0
  359. data/test/fixtures/diagram_cache_sessions.yml +6 -0
  360. data/test/fixtures/diagram_caches.yml +6 -0
  361. data/test/fixtures/directories.yml +57 -0
  362. data/test/fixtures/draw_parameters.yml +6 -0
  363. data/test/fixtures/function_arguments.yml +15 -0
  364. data/test/fixtures/function_outputs.yml +15 -0
  365. data/test/fixtures/functions.yml +29 -0
  366. data/test/fixtures/group_members.yml +33 -0
  367. data/test/fixtures/groups.yml +25 -0
  368. data/test/fixtures/images.yml +12 -0
  369. data/test/fixtures/keyword_attributes.yml +73 -0
  370. data/test/fixtures/knowledges.yml +10 -0
  371. data/test/fixtures/node_relations.yml +11 -0
  372. data/test/fixtures/nodes.yml +298 -0
  373. data/test/fixtures/sign_up_users.yml +8 -0
  374. data/test/fixtures/spatial_and_time_attributes.yml +29 -0
  375. data/test/fixtures/user_mailer/authorization_inform +11 -0
  376. data/test/fixtures/user_mailer/signup_accepted +10 -0
  377. data/test/fixtures/user_mailer/signup_confirm +17 -0
  378. data/test/fixtures/user_mailer/signup_inform +10 -0
  379. data/test/fixtures/user_mailer/signup_rejected +9 -0
  380. data/test/fixtures/users.yml +31 -0
  381. data/test/fixtures/value_types.yml +10 -0
  382. data/test/fixtures/variables.yml +17 -0
  383. data/test/functional/analysis_controller_test.rb +169 -0
  384. data/test/functional/description_controller_test.rb +18 -0
  385. data/test/functional/function_controller_test.rb +18 -0
  386. data/test/functional/group_controller_test.rb +18 -0
  387. data/test/functional/search_controller_test.rb +83 -0
  388. data/test/functional/user_controller_test.rb +77 -0
  389. data/test/functional/webservice_analysis_api_test.rb +12 -0
  390. data/test/functional/work_flow_controller_test.rb +18 -0
  391. data/test/test_helper.rb +28 -0
  392. data/test/unit/diagram_cache_datum_test.rb +10 -0
  393. data/test/unit/diagram_cache_session_test.rb +10 -0
  394. data/test/unit/diagram_cache_test.rb +10 -0
  395. data/test/unit/directory_test.rb +49 -0
  396. data/test/unit/draw_parameter_test.rb +10 -0
  397. data/test/unit/function_argument_test.rb +10 -0
  398. data/test/unit/function_output_test.rb +10 -0
  399. data/test/unit/function_test.rb +10 -0
  400. data/test/unit/group_test.rb +48 -0
  401. data/test/unit/image_test.rb +13 -0
  402. data/test/unit/keyword_attribute_test.rb +33 -0
  403. data/test/unit/knowledge_test.rb +13 -0
  404. data/test/unit/node_relation_test.rb +20 -0
  405. data/test/unit/node_test.rb +85 -0
  406. data/test/unit/sign_up_user_test.rb +20 -0
  407. data/test/unit/spatial_and_time_attribute_test.rb +29 -0
  408. data/test/unit/user_mailer_test.rb +101 -0
  409. data/test/unit/user_test.rb +134 -0
  410. data/test/unit/value_type_test.rb +10 -0
  411. data/test/unit/variable_test.rb +35 -0
  412. data/vendor/plugins/acts_as_list/README +23 -0
  413. data/vendor/plugins/acts_as_list/init.rb +3 -0
  414. data/vendor/plugins/acts_as_list/lib/active_record/acts/list.rb +256 -0
  415. data/vendor/plugins/acts_as_list/test/list_test.rb +332 -0
  416. data/vendor/plugins/acts_as_tree/README +26 -0
  417. data/vendor/plugins/acts_as_tree/Rakefile +22 -0
  418. data/vendor/plugins/acts_as_tree/init.rb +1 -0
  419. data/vendor/plugins/acts_as_tree/lib/active_record/acts/tree.rb +96 -0
  420. data/vendor/plugins/acts_as_tree/test/abstract_unit.rb +0 -0
  421. data/vendor/plugins/acts_as_tree/test/acts_as_tree_test.rb +219 -0
  422. data/vendor/plugins/acts_as_tree/test/database.yml +0 -0
  423. data/vendor/plugins/acts_as_tree/test/fixtures/mixin.rb +0 -0
  424. data/vendor/plugins/acts_as_tree/test/fixtures/mixins.yml +0 -0
  425. data/vendor/plugins/acts_as_tree/test/schema.rb +0 -0
  426. data/vendor/plugins/will_paginate/CHANGELOG +92 -0
  427. data/vendor/plugins/will_paginate/LICENSE +18 -0
  428. data/vendor/plugins/will_paginate/README.rdoc +131 -0
  429. data/vendor/plugins/will_paginate/Rakefile +62 -0
  430. data/vendor/plugins/will_paginate/examples/apple-circle.gif +0 -0
  431. data/vendor/plugins/will_paginate/examples/index.haml +69 -0
  432. data/vendor/plugins/will_paginate/examples/index.html +92 -0
  433. data/vendor/plugins/will_paginate/examples/pagination.css +90 -0
  434. data/vendor/plugins/will_paginate/examples/pagination.sass +91 -0
  435. data/vendor/plugins/will_paginate/init.rb +1 -0
  436. data/vendor/plugins/will_paginate/lib/will_paginate.rb +86 -0
  437. data/vendor/plugins/will_paginate/lib/will_paginate/array.rb +16 -0
  438. data/vendor/plugins/will_paginate/lib/will_paginate/collection.rb +145 -0
  439. data/vendor/plugins/will_paginate/lib/will_paginate/core_ext.rb +32 -0
  440. data/vendor/plugins/will_paginate/lib/will_paginate/finder.rb +247 -0
  441. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope.rb +132 -0
  442. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb +39 -0
  443. data/vendor/plugins/will_paginate/lib/will_paginate/version.rb +9 -0
  444. data/vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb +373 -0
  445. data/vendor/plugins/will_paginate/will_paginate.gemspec +21 -0
  446. metadata +586 -0
@@ -0,0 +1,16 @@
1
+ <% if @mode %>
2
+ <table>
3
+ <tr>
4
+ <th>other_mode</th>
5
+ <td><%= @mode[:other_mode] %></td>
6
+ <tr>
7
+ <tr>
8
+ <th>rgroups</th>
9
+ <td><%= @mode[:rgroups] %></td>
10
+ <tr>
11
+ <tr>
12
+ <th>wgroups</th>
13
+ <td><%= @mode[:wgroups] %></td>
14
+ <tr>
15
+ </table>
16
+ <% end %>
@@ -0,0 +1,181 @@
1
+ <%
2
+ anc = @ancestors
3
+ path = @path
4
+ if @node.class.respond_to?(:site)
5
+ @site = @node.class.site.to_s
6
+ path = @site + "@" + @path
7
+ else
8
+ @site = nil
9
+ end
10
+ %>
11
+ <p class="description">
12
+ <div class="link_descriotion">
13
+ <% if @mode %>
14
+ <a href="<%=path%>" class="description" target="_brank">edit</a>
15
+ <% end %>
16
+ <%
17
+ case @type
18
+ when "directory"
19
+ %>
20
+ <a id="openTreeLink" class="description">open node tree</a>
21
+ <script>
22
+ $("openTreeLink").href = gfdnaviUrlRoot + "finder/index?path=<%=path%>";
23
+ </script>
24
+
25
+ <%
26
+ if @dl_url
27
+ %>
28
+ <a href="<%=@dl_url%>" class="description">Download this file</a>
29
+ <%
30
+ end
31
+ when "variable"
32
+ %>
33
+ <%= link_to("Add this variable for analysis/visualization",
34
+ {:controller => "finder", :action => "add_to_list", :path => path, :type => "var"}, :class => "description") %>
35
+ <%
36
+ when "image"
37
+ url = @dl_url
38
+ %>
39
+ <a href="<%= url %>" class="description">Download this image<br/>
40
+ <img src="<%= url %>"/>
41
+ </a>
42
+ <% end %>
43
+ <div>
44
+ </p>
45
+
46
+ <div class="title_description">
47
+ <h1 class="description">
48
+ <%=h anc[-1][:name] %>
49
+ <font size=3>
50
+ <%
51
+ if @type == "directory"
52
+ if @plain_file
53
+ %>
54
+ [plain file]
55
+ <% else %>
56
+ [directory]
57
+ <% end %>
58
+ &nbsp;&nbsp;&nbsp;&nbsp;<%= path %>
59
+ <% end %>
60
+ </font>
61
+ </h1>
62
+ <h2 class="description">
63
+ <%=h anc[-1][:title] %>
64
+ </h2>
65
+ <% if @mode %>
66
+ <h2>
67
+ <%= render :partial => "mode" %>
68
+ </h2>
69
+ <% end %>
70
+ </div>
71
+
72
+ <hr/>
73
+
74
+ <% if @type == "directory" %>
75
+ <div style="padding-bottom:1em">
76
+ <h3>Children</h3>
77
+ <% [["Directories",@directories],["Variables",@variables],["Images",@images]].each{|ntitle,nodes| %>
78
+ <div style="padding-left:1em">
79
+ <%= ntitle %>
80
+ <div style="padding-left:2em">
81
+ <%= nodes.collect{|dir|
82
+ link_to(dir.name, data_url(:path => dir.path.sub(/^\//,""),:format=>"html")) }.join(", ") %>
83
+ </div>
84
+ </div>
85
+ <% } %>
86
+ </div>
87
+
88
+ <hr/>
89
+ <% end %>
90
+
91
+ <div>
92
+ <h3>Ancestors</h3>
93
+ <%= render :partial => "ancestors" %>
94
+ </div>
95
+
96
+ <% if %w(variable image knowledge).include?(@type) %>
97
+ <p>
98
+ <!-- ������ <hr/> ������ƂȂ��� IE �ł͎���������̂œ���ʂ��� -->
99
+ <div class="references">
100
+ <h4>Link:</h4>
101
+ <%
102
+ refs = @references
103
+ l_imgs = @link_images
104
+ l_vars = @link_variables
105
+
106
+ if (refs | l_imgs | l_vars).length == 0
107
+ %>
108
+ no link<br>
109
+ <% else %>
110
+ <% if refs.length > 0 %>
111
+ <ul>
112
+ <% refs.each{|ref|
113
+ rpath = ref["path"]
114
+ %>
115
+ <li>
116
+ <a href="<%= data_url(:path => rpath.sub(/^\//,""), :format => "html") %>"><%= h(File.basename(rpath)) %></a>
117
+ </li>
118
+ <% } %>
119
+ </ul>
120
+ <% end %>
121
+ <% if l_imgs.length > 0 %>
122
+ Images:
123
+ <ul>
124
+ <%
125
+ l_imgs.each{|img|
126
+ rpath = img["path"]
127
+ %>
128
+ <li>
129
+ <a href="<%= data_url(:path => rpath.sub(/^\//,""), :format => "html") %>"><%= h(File.basename(rpath)) %></a>
130
+ </li>
131
+ <% } %>
132
+ </ul>
133
+ <% end %>
134
+ <% if l_vars.length > 0 %>
135
+ Variables:
136
+ <ul>
137
+ <%
138
+ l_vars.each{|var|
139
+ rpath = var["path"]
140
+ %>
141
+ <li>
142
+ <a href="<%= data_url(:path => rpath.sub(/^\//,""), :format => "html") %>"><%= h(File.basename(rpath)) %></a><br>
143
+ </li>
144
+ <% } %>
145
+ </ul>
146
+ <% end %>
147
+ <% end %>
148
+ </p>
149
+ <p>
150
+ <h4>Linked From:</h4>
151
+ <%
152
+ refs = @referenced_by
153
+ l_klgs = @linked_knowledges
154
+ if (refs | l_klgs).length == 0
155
+ %>
156
+ no link<br>
157
+ <% else %>
158
+ <% if refs.length > 0 %>
159
+ <ul>
160
+ <% refs.each{|ref|
161
+ rpath = ref["path"]
162
+ %>
163
+ <li>
164
+ <a href="<%= data_url(:path => rpath.sub(/^\//,""), :format => "html") %>"><%= h(File.basename(rpath)) %></a>
165
+ </li>
166
+ <% } %>
167
+ </ul>
168
+ <% end %>
169
+ <% if l_klgs.length > 0 %>
170
+ Knowledges:
171
+ <ul>
172
+ <% l_klgs.each{|klg| %>
173
+ <li>
174
+ <%= link_to h(klg["title"]), :controller => 'knowledge', :action => 'show', :path => klg["path"] %>
175
+ </li>
176
+ <% } %>
177
+ </ul>
178
+ <% end %>
179
+ <% end %>
180
+ </p>
181
+ <% end %>
@@ -0,0 +1 @@
1
+ <%= render :partial => "description_methods_table" %>
@@ -0,0 +1,73 @@
1
+ <%
2
+ rgroups = Group.find_by_bit_flag(@node.rgroups).collect{|g| g.name}
3
+ wgroups = Group.find_by_bit_flag(@node.wgroups).collect{|g| g.name}
4
+ %>
5
+
6
+ <h3>Change groups for read</h3>
7
+
8
+
9
+
10
+ <% form_tag do %>
11
+
12
+ <p>
13
+ path:
14
+ <%= @node.path %>
15
+ <%= hidden_field_tag("path", @node.path) %>
16
+ </p>
17
+
18
+ <%
19
+ if @users
20
+ options = Array.new
21
+ @users.each{|user|
22
+ options.push "<option#{user==@node.owner ? " selected" : ""}>#{user.login}</options>"
23
+ }
24
+ %>
25
+ <p>
26
+ user:
27
+ <%= select_tag("owner", options) %>
28
+ </p>
29
+ <% end %>
30
+
31
+ <p>
32
+ other_mode:
33
+ <%
34
+ options = Array.new
35
+ options.push "<option#{@node.other_mode==4 ? " selected" : ""} value=\"4\">4 (others can read)</option>"
36
+ options.push "<option#{@node.other_mode==0 ? " selected" : ""} value=\"0\">0 (others cannot read)</option>"
37
+ %>
38
+ <%= select_tag("other_mode", options) %>
39
+ </p>
40
+
41
+ <p>
42
+ readable to:
43
+ <%
44
+ options = ["<option#{@node.other_mode==4 ? " selected" : ""}>everyone</option>"]
45
+ if @groups
46
+ options.push('<option disabled>--groups--</option>')
47
+ options += @groups.collect{|g|
48
+ gname = g.name
49
+ "<option#{rgroups.include?(gname) ? " selected" : ""}>#{h(gname)}</option>"
50
+ }
51
+ end
52
+ %>
53
+ <%= select_tag("rgroups[]", options, {:multiple=>true} ) %>
54
+ </p>
55
+ <p>
56
+ writable to:
57
+ <%
58
+ options = Array.new
59
+ if @groups
60
+ options.push('<option disabled>--groups--</option>')
61
+ options += @groups.collect{|g|
62
+ gname = g.name
63
+ "<option#{wgroups.include?(gname) ? " selected" : ""}>#{h(gname)}</option>"
64
+ }
65
+ end
66
+ %>
67
+ <%= select_tag("wgroups[]", options, {:multiple=>true} ) %>
68
+ </p>
69
+
70
+ <br/>
71
+ <%= submit_tag("update") %>
72
+
73
+ <% end %>
@@ -0,0 +1,25 @@
1
+ <%
2
+ cols = %w(path node_type)
3
+ %>
4
+ <table border=1>
5
+ <tr>
6
+ <% cols.each{|col| %>
7
+ <th><%= col %></th>
8
+ <% } %>
9
+ </tr>
10
+ <% @nodes.each{|node| %>
11
+ <tr>
12
+ <%
13
+ cols.each{|col|
14
+ case col
15
+ when "node_type"
16
+ val = Node::NODE_TYPES[node[col]]
17
+ else
18
+ val = node[col]
19
+ end
20
+ %>
21
+ <td><%= val %></td>
22
+ <% } %>
23
+ </tr>
24
+ <% } %>
25
+ </table>
@@ -0,0 +1,20 @@
1
+ <%
2
+ cols = %w(name path size node_type size mtime owner other_mode rgroups wgroups created_at updated_at)
3
+ %>
4
+ <table border=1>
5
+ <% cols.each{|col|
6
+ case col
7
+ when "node_type"
8
+ val = Node::NODE_TYPES[@node[col]]
9
+ when "rgroups", "wgroups"
10
+ val = Group.find_by_bit_flag(@node[col])
11
+ else
12
+ val = @node[col]
13
+ end
14
+ %>
15
+ <tr>
16
+ <th><%= col %></th>
17
+ <td><%= val %></td>
18
+ </tr>
19
+ <% } %>
20
+ </table>
@@ -0,0 +1,68 @@
1
+ <%
2
+ child = children_details_mapsearch
3
+ title = child.keyword_attributes.find_by_stdname("title")
4
+ desc = child.keyword_attributes.find_by_stdname("description")
5
+ case @type
6
+ when "dir"
7
+ image = @image_folder
8
+ description = link_to(image + h(child.name), :controller => "description", :action => "directory", :id => child.id)
9
+ if child.variables_for_user(@user).length > 0
10
+ link = "Add children"
11
+ else
12
+ link = false
13
+ end
14
+ when "var"
15
+ if child.gphys?
16
+ image = @image_data
17
+ link = "Add"
18
+ else
19
+ image = @image_image
20
+ link = false
21
+ end
22
+ description = link_to(image + h(child.name), :controller => "description", :action => "variable", :id => child.id)
23
+ end
24
+ %>
25
+
26
+ <tr>
27
+ <td>
28
+ <% if link %>
29
+ <%= check_box_tag("list[#{@type}][#{child.id}]") %>
30
+ <% end %>
31
+ </td>
32
+
33
+
34
+ <td nowrap>
35
+ <% if link %>
36
+ <%= link_to(link, :action => "add_to_list", :id => child.id, :type => @type) %>
37
+ <% end %>
38
+ </td>
39
+
40
+ <td nowrap>
41
+ <%= @no %><%= child.id %>
42
+ </td>
43
+
44
+ <td nowrap>
45
+ <%= description %>
46
+ </td>
47
+
48
+ <td nowrap>
49
+ <% if title %>
50
+ <%= h( title.value ) %>
51
+ <% end %>
52
+ </td>
53
+
54
+
55
+ <td nowrap>
56
+ <% if desc %>
57
+ <%= h( desc.value ) %>
58
+ <% end %>
59
+ </td>
60
+
61
+ <td nowrap>
62
+ <% SpatialAttribute.find(:all, :conditions=>"variable_id=#{child.id}").each do |s| %>
63
+ (<%= h( s.longitude_lb ) %>,<%= h( s.latitude_lb ) %>)-(<%= h( s.longitude_rt ) %>,<%= h( s.latitude_rt ) %>)
64
+
65
+ <% end %>
66
+ </td>
67
+ </tr>
68
+
@@ -0,0 +1,205 @@
1
+ <%
2
+ require "multibytes"
3
+
4
+ child = children_details_tr
5
+ path = child.path
6
+ title = child.keyword_attributes.find_by_stdname("title")
7
+ desc = child.keyword_attributes.find_by_stdname("description")
8
+
9
+ link = false
10
+ dl = false
11
+
12
+ if child.directory?
13
+ image = @image_folder
14
+ if child.count_variable_nodes(:user=>@user) > 0
15
+ link = image_tag('tree/anal_viz.png', :alt=>'Anal/Vis',
16
+ :title=>'Analyze/visualize variables in this folder',
17
+ :border=>0,:align=>'absmiddle')
18
+ end
19
+ if child.entity.downloadable?
20
+ if child.opendap?
21
+ dl = path + '.html' # ad hoc solution : applicable only to opendap
22
+ elsif @url_prefix
23
+ dl = url_for(:controller=>"node", :action=>"download", :path => path)
24
+ end
25
+ end
26
+ elsif child.knowledge?
27
+ # [show] knowledge
28
+ show_knowledge = image_tag('tree/show.png', :alt=>'Show',
29
+ :title=>'Show knowledges',
30
+ :border=>0,:align=>'absmiddle')
31
+ elsif child.variable?
32
+ image = @image_data
33
+ link = image_tag('tree/anal_viz.png', :alt=>'Anal/Vis',
34
+ :title=>'Analyze/visualize this variable',
35
+ :border=>0, :align=>'absmiddle')
36
+ elsif child.image?
37
+ image = @image_image
38
+ show_image = image_tag('tree/show.png', :alt=>'Show',
39
+ :title=>'Show images',
40
+ :border=>0,:align=>'absmiddle')
41
+ else
42
+ raise "bug"
43
+ end
44
+
45
+ if @mapsearch
46
+ details = link_to("Details", :controller => "description", :action => "node", :path => path)
47
+ else
48
+ details = link_to_remote(
49
+ image_tag('tree/details.png',:alt=>'details',
50
+ :title=>'Show details',:border=>0,:align=>'absmiddle'),
51
+ :update => :details,
52
+ :url => {:controller => "description", :action => "node", :path => path})
53
+ end
54
+ %>
55
+
56
+ <tr>
57
+ <td>
58
+ <% if link || show_image %>
59
+ <%= check_box_tag("list[#{path}]") %>
60
+ <% end %>
61
+ </td>
62
+
63
+
64
+ <td nowrap>
65
+ <% if link %>
66
+ <%= link_to(link, :action => "add_to_list", :path => path, :type => @type) %>
67
+ <% elsif show_knowledge %>
68
+ <%= link_to_remote(show_knowledge, :update => :details, :url => {:controller => "knowledge", :action => "show_without_layout", :path => path}) %>
69
+ <% elsif show_image %>
70
+ <%= link_to_remote(show_image, :update=> :details, :url=>{:controller=>"description", :action=>"images", :images => path}) %>
71
+ <% end %>
72
+ </td>
73
+
74
+ <% unless @mapsearch %>
75
+ <td nowrap>
76
+ <% if dl %>
77
+ <a href="<%= dl %>">
78
+ <!-- DL -->
79
+ <%= image_tag('tree/DL.png', :alt=>'DL', :title=>'Download',
80
+ :border=>0, :align=>'absmiddle')
81
+ %>
82
+ </a>
83
+ <% end %>
84
+ </td>
85
+ <% end %>
86
+
87
+ <% if @mapsearch %>
88
+ <td nowrap>
89
+ <%= @no %><%= child.id %>
90
+ </td>
91
+ <% end %>
92
+
93
+
94
+ <td nowrap>
95
+ <%= details %>
96
+ </td>
97
+
98
+ <!-- [knowledge] button - search from Variable to Image and Knowledge-->
99
+ <td nowrap>
100
+ <% if (child.node_type == 1 && @user)
101
+ # image -> knowledge_ids
102
+ if path[-4 .. -1] == ".png"
103
+ knowledge_ids = Variable.knowledges(session[:user], path)
104
+ # variable(numerical data) -> knowledge_ids
105
+ else
106
+ node = Node.find(:first, :conditions => ["path=?", path], :user => session[:user])
107
+ if node.referenced_by.length > 0
108
+ knowledge_ids = Array.new
109
+ node.referenced_by.each{|nd|
110
+ if nd.node_type == 2 # referenced by Image
111
+ knowledge_ids.concat(Variable.knowledges(session[:user], nd.path))
112
+ if knowledge_ids.length > 0
113
+ for kid in knowledge_ids
114
+ knowledge = Knowledge.find_by_sql("SELECT * FROM knowledges WHERE id=#{kid}")[0]
115
+ end
116
+ end
117
+ end
118
+ }
119
+ end
120
+ end
121
+ if (knowledge_ids && knowledge_ids.length > 0)
122
+ knowledge_ids.uniq!
123
+ %>
124
+ <%=
125
+ link_to_remote(
126
+ image_tag(
127
+ 'tree/knowledges.png',
128
+ :alt=>'knowledges',
129
+ :title=>'knowledge list',
130
+ :border=>0,
131
+ :align=>'absmiddle'
132
+ ),
133
+ :update => :details,
134
+ :url => {:controller => "knowledge", :action => "list_without_layout", :knowledge_ids => knowledge_ids}
135
+ )
136
+ %>
137
+ <%
138
+ end
139
+ end
140
+ %>
141
+ </td>
142
+
143
+
144
+ <% unless @mapsearch %>
145
+ <td nowrap>
146
+ <%= image %>
147
+ </td>
148
+ <% end %>
149
+
150
+ <td nowrap bgcolor="#f0f0f0">
151
+ <% if child.knowledge? %>
152
+ <%= h(child.path.split('/')[-1]) %>
153
+ <% else %>
154
+ <%= h(child.name) %>
155
+ <% end %>
156
+ </td>
157
+
158
+ <td nowrap>
159
+ <% if child.knowledge? %>
160
+ <% knowledge = Knowledge.find(child, :user => session[:user]) %>
161
+ <%= h(knowledge.title.jleft_w_dots(28)) %>
162
+ <% else %>
163
+ <% if title %>
164
+ <%= h( title.value.jleft_w_dots(28) ) %>
165
+ <% end %>
166
+ <% end %>
167
+ </td>
168
+
169
+ <td nowrap bgcolor="#f0f0f0" align=right>
170
+ <%= h(Node.size2str(child.size)) %>
171
+ </td>
172
+
173
+ <td nowrap>
174
+ <%= h(child.mtime.strftime('%Y-%m-%d %H:%M')) %>
175
+ </td>
176
+
177
+ <td nowrap bgcolor="#f0f0f0">
178
+ <% if desc %>
179
+ <%= h( desc.value.jleft_w_dots(80) ) %>
180
+ <% end %>
181
+ </td>
182
+
183
+
184
+ <%
185
+ if @mapsearch
186
+ if @mode == "points" || @mode == "partial"
187
+ %>
188
+ <td nowrap>
189
+ <%
190
+ SpatialAttribute.find(:all, :conditions=>"variable_id=#{child.id}").each do |s|
191
+ case @mode
192
+ when "points"
193
+ %>
194
+ (<%= h( s.longitude_lb ) %>,<%= h( s.latitude_lb ) %>)
195
+ <% when "partial" %>
196
+ (<%= h( s.longitude_lb ) %>,<%= h( s.latitude_lb ) %>)-(<%= h( s.longitude_rt ) %>,<%= h( s.latitude_rt ) %>)
197
+ <%
198
+ end
199
+ end
200
+ end
201
+ %>
202
+ </td>
203
+ <% end %>
204
+
205
+ </tr>