gfdnavi 1.3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (446) hide show
  1. data/ChangeLog +10949 -0
  2. data/LICENCE.txt +57 -0
  3. data/Makefile +18 -0
  4. data/TODO +132 -0
  5. data/app/controllers/analysis_controller.rb +700 -0
  6. data/app/controllers/application.rb +41 -0
  7. data/app/controllers/draw_method_controller.rb +172 -0
  8. data/app/controllers/explorer_controller.rb +197 -0
  9. data/app/controllers/finder_controller.rb +331 -0
  10. data/app/controllers/function_controller.rb +204 -0
  11. data/app/controllers/group_controller.rb +115 -0
  12. data/app/controllers/keyword_attributes_controller.rb +52 -0
  13. data/app/controllers/knowledge_controller.rb +928 -0
  14. data/app/controllers/nodes_controller.rb +515 -0
  15. data/app/controllers/search_controller.rb +341 -0
  16. data/app/controllers/user_controller.rb +337 -0
  17. data/app/helpers/analysis_helper.rb +2 -0
  18. data/app/helpers/application_helper.rb +105 -0
  19. data/app/helpers/description_helper.rb +2 -0
  20. data/app/helpers/function_helper.rb +2 -0
  21. data/app/helpers/group_helper.rb +2 -0
  22. data/app/helpers/search_helper.rb +3 -0
  23. data/app/helpers/user_helper.rb +2 -0
  24. data/app/helpers/work_flow_helper.rb +92 -0
  25. data/app/models/actual_file.rb +3 -0
  26. data/app/models/analysis.rb +715 -0
  27. data/app/models/analysis_history.rb +42 -0
  28. data/app/models/cross_array.rb +22 -0
  29. data/app/models/cross_result.rb +254 -0
  30. data/app/models/derived_spatial_attribute.rb +3 -0
  31. data/app/models/diagram_cache.rb +16 -0
  32. data/app/models/diagram_cache_datum.rb +4 -0
  33. data/app/models/diagram_cache_session.rb +8 -0
  34. data/app/models/directory.rb +21 -0
  35. data/app/models/draw_method.rb +48 -0
  36. data/app/models/draw_method_attribute.rb +8 -0
  37. data/app/models/draw_parameter.rb +12 -0
  38. data/app/models/explorer_query.rb +354 -0
  39. data/app/models/explorer_result.rb +312 -0
  40. data/app/models/function.rb +75 -0
  41. data/app/models/function_argument.rb +6 -0
  42. data/app/models/function_output.rb +4 -0
  43. data/app/models/group.rb +153 -0
  44. data/app/models/image.rb +20 -0
  45. data/app/models/keyword_attribute.rb +179 -0
  46. data/app/models/knowledge.rb +94 -0
  47. data/app/models/knowledge_backup.rb +32 -0
  48. data/app/models/knowledge_figure.rb +16 -0
  49. data/app/models/knowledge_figure_backup.rb +16 -0
  50. data/app/models/knowledge_parser.rb +392 -0
  51. data/app/models/node.rb +605 -0
  52. data/app/models/node_entity_abstract.rb +112 -0
  53. data/app/models/node_lineage.rb +6 -0
  54. data/app/models/node_relation.rb +4 -0
  55. data/app/models/path_node.rb +60 -0
  56. data/app/models/query.rb +193 -0
  57. data/app/models/query_history.rb +12 -0
  58. data/app/models/results.rb +48 -0
  59. data/app/models/sign_up_user.rb +25 -0
  60. data/app/models/spatial_and_time_attribute.rb +11 -0
  61. data/app/models/user.rb +115 -0
  62. data/app/models/user_mailer.rb +48 -0
  63. data/app/models/value_type.rb +3 -0
  64. data/app/models/variable.rb +70 -0
  65. data/app/models/virtual_node.rb +457 -0
  66. data/app/views/analysis/__help_analysis_tab.en.html +57 -0
  67. data/app/views/analysis/__help_draw_share.en.html +12 -0
  68. data/app/views/analysis/__help_draw_tab.en.html +6 -0
  69. data/app/views/analysis/_analysis_function_settings.rhtml +61 -0
  70. data/app/views/analysis/_analysis_settings.rhtml +28 -0
  71. data/app/views/analysis/_diagram.rhtml +70 -0
  72. data/app/views/analysis/_dimension_option.rhtml +59 -0
  73. data/app/views/analysis/_draw_general_settings.rhtml +217 -0
  74. data/app/views/analysis/_draw_settings.rhtml +73 -0
  75. data/app/views/analysis/_history.rhtml +19 -0
  76. data/app/views/analysis/_popular_diagrams.rhtml +42 -0
  77. data/app/views/analysis/_save_form.rhtml +44 -0
  78. data/app/views/analysis/_variables.rhtml +66 -0
  79. data/app/views/analysis/_variables_order.rhtml +56 -0
  80. data/app/views/analysis/index.rhtml +195 -0
  81. data/app/views/analysis/preview.rhtml +3 -0
  82. data/app/views/analysis/save.rhtml +73 -0
  83. data/app/views/analysis/show_diagram.rhtml +42 -0
  84. data/app/views/cross/_display_map.rhtml +201 -0
  85. data/app/views/cross/_result.rhtml +205 -0
  86. data/app/views/cross/_show_result_tree.rhtml +40 -0
  87. data/app/views/cross/_show_results.rhtml +80 -0
  88. data/app/views/cross/_style.rhtml +21 -0
  89. data/app/views/cross/index.rhtml +271 -0
  90. data/app/views/draw_method/_edit_form.rhtml +110 -0
  91. data/app/views/draw_method/create.rhtml +8 -0
  92. data/app/views/draw_method/details.rhtml +113 -0
  93. data/app/views/draw_method/edit.rhtml +8 -0
  94. data/app/views/draw_method/list.rhtml +80 -0
  95. data/app/views/explorer/_display_map.rhtml +199 -0
  96. data/app/views/explorer/_show_result_tree.rhtml +40 -0
  97. data/app/views/explorer/_show_results.rhtml +101 -0
  98. data/app/views/explorer/_style.rhtml +21 -0
  99. data/app/views/explorer/index.rhtml +214 -0
  100. data/app/views/finder/_children.html.erb +84 -0
  101. data/app/views/finder/_children_details.html.erb +74 -0
  102. data/app/views/finder/_children_details_tr.html.erb +196 -0
  103. data/app/views/finder/create_tree.html.erb +15 -0
  104. data/app/views/finder/flex.html.erb +52 -0
  105. data/app/views/finder/index.html.erb +47 -0
  106. data/app/views/finder/show_details.html.erb +3 -0
  107. data/app/views/finder/show_images.html.erb +3 -0
  108. data/app/views/function/_edit_form.rhtml +106 -0
  109. data/app/views/function/create.rhtml +8 -0
  110. data/app/views/function/details.rhtml +96 -0
  111. data/app/views/function/edit.rhtml +8 -0
  112. data/app/views/function/list.rhtml +80 -0
  113. data/app/views/group/add_member.rhtml +13 -0
  114. data/app/views/group/change_owner.rhtml +15 -0
  115. data/app/views/group/create.rhtml +11 -0
  116. data/app/views/group/delete_member.rhtml +14 -0
  117. data/app/views/group/list.rhtml +63 -0
  118. data/app/views/knowledge/_backup.rhtml +135 -0
  119. data/app/views/knowledge/_category.rhtml +58 -0
  120. data/app/views/knowledge/_category_list.rhtml +34 -0
  121. data/app/views/knowledge/_category_table.rhtml +23 -0
  122. data/app/views/knowledge/_comment.rhtml +64 -0
  123. data/app/views/knowledge/_comment_input_form.rhtml +19 -0
  124. data/app/views/knowledge/_comments.rhtml +84 -0
  125. data/app/views/knowledge/_form.rhtml +139 -0
  126. data/app/views/knowledge/_group_figure_form.rhtml +187 -0
  127. data/app/views/knowledge/_layout_figure.rhtml +61 -0
  128. data/app/views/knowledge/_layout_figures_in_a_row_above_text.rhtml +42 -0
  129. data/app/views/knowledge/_layout_figures_under_text.rhtml +45 -0
  130. data/app/views/knowledge/_layout_one_figure_above_text.rhtml +28 -0
  131. data/app/views/knowledge/_summary.rhtml +21 -0
  132. data/app/views/knowledge/edit.rhtml +37 -0
  133. data/app/views/knowledge/list.rhtml +287 -0
  134. data/app/views/knowledge/new.rhtml +23 -0
  135. data/app/views/knowledge/new_from_analysis.rhtml +21 -0
  136. data/app/views/knowledge/show.rhtml +196 -0
  137. data/app/views/layouts/gfdnavi.rhtml +105 -0
  138. data/app/views/nodes/_ancestors.html.erb +89 -0
  139. data/app/views/nodes/_description_methods_table.html.erb +75 -0
  140. data/app/views/nodes/_mode.html.erb +16 -0
  141. data/app/views/nodes/description.html.erb +181 -0
  142. data/app/views/nodes/description_methods.html.erb +1 -0
  143. data/app/views/nodes/edit.html.erb +73 -0
  144. data/app/views/nodes/index.html.erb +25 -0
  145. data/app/views/nodes/show.html.erb +20 -0
  146. data/app/views/search/_children_details_mapsearch.rhtml +68 -0
  147. data/app/views/search/_children_details_tr.rhtml +205 -0
  148. data/app/views/search/_show_grouplist.rhtml +74 -0
  149. data/app/views/search/_show_results.rhtml +43 -0
  150. data/app/views/search/_show_results_global.rhtml +36 -0
  151. data/app/views/search/_show_results_partial.rhtml +39 -0
  152. data/app/views/search/_show_results_partial_groupbyfile.rhtml +50 -0
  153. data/app/views/search/_show_variablelist.rhtml +28 -0
  154. data/app/views/search/mapsearch.rhtml +176 -0
  155. data/app/views/search/remapsearch.rjs +18 -0
  156. data/app/views/search/show_details.rhtml +3 -0
  157. data/app/views/user/add_user.rhtml +30 -0
  158. data/app/views/user/change_password.rhtml +25 -0
  159. data/app/views/user/edit.html.erb +50 -0
  160. data/app/views/user/index.rhtml +162 -0
  161. data/app/views/user/login.rhtml +41 -0
  162. data/app/views/user/logout.rhtml +4 -0
  163. data/app/views/user/signup.rhtml +36 -0
  164. data/app/views/user/signup_succeeded.rhtml +36 -0
  165. data/app/views/user_mailer/authorization_inform.rhtml +15 -0
  166. data/app/views/user_mailer/signup_accepted.rhtml +12 -0
  167. data/app/views/user_mailer/signup_confirm.rhtml +14 -0
  168. data/app/views/user_mailer/signup_inform.rhtml +13 -0
  169. data/app/views/user_mailer/signup_rejected.rhtml +11 -0
  170. data/app/views/work_flow/_push_wsdls.rhtml +55 -0
  171. data/app/views/work_flow/index.rhtml +46 -0
  172. data/config/database.yml.example +35 -0
  173. data/config/environment.rb +68 -0
  174. data/config/gfdnavi.yml.example +95 -0
  175. data/config/load_config.rb +151 -0
  176. data/config/routes.rb +35 -0
  177. data/consistency_checker.rb +129 -0
  178. data/data/gfdnavi_docs/how_to_draw_multiple_images.knlge +68 -0
  179. data/data/gfdnavi_docs/how_to_knowledge.knlge +138 -0
  180. data/data/gfdnavi_docs/how_to_write_document_about_Gfdnavi.knlge +30 -0
  181. data/data/samples/jmadata.SIGEN +8 -0
  182. data/data/samples/jmadata.yml +6 -0
  183. data/data/samples/jmadata/MSM-P/2006.nc.yml +2 -0
  184. data/data/samples/jmadata/MSM-P/2006.yml +17 -0
  185. data/data/samples/jmadata/MSM-P/2006/0101.nc +0 -0
  186. data/data/samples/jmadata/MSM-P/2006/0101.nc.yml +13 -0
  187. data/data/samples/jmadata/MSM-P/2006/0102.nc +0 -0
  188. data/data/samples/jmadata/MSM-P/2006/0103.nc +0 -0
  189. data/data/samples/jmadata/MSM-P/2006/0104.nc +0 -0
  190. data/data/samples/jmadata/MSM-P/2006/0105.nc +0 -0
  191. data/data/samples/jmadata/MSM-P/2006/010[1-3].nc.yml +2 -0
  192. data/data/samples/jmadata/MSM-P/2006/skip_data.rb +96 -0
  193. data/data/samples/jmadata/MSM-P/2006/skip_data.sh +6 -0
  194. data/data/samples/reanalysis.SIGEN +8 -0
  195. data/data/samples/reanalysis/era40.SIGEN +8 -0
  196. data/data/samples/reanalysis/era40.yml +2 -0
  197. data/data/samples/reanalysis/era40/t.jan.nc +0 -0
  198. data/data/samples/reanalysis/era40/t.jan.nc.yml +1 -0
  199. data/data/samples/reanalysis/ncep.SIGEN +9 -0
  200. data/data/samples/reanalysis/ncep/T.jan.100hPa.png +0 -0
  201. data/data/samples/reanalysis/ncep/T.jan.100hPa.png.yml +43 -0
  202. data/data/samples/reanalysis/ncep/T.jan.nc +0 -0
  203. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc +0 -0
  204. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc.yml +8 -0
  205. data/data/samples/reanalysis/ncep/T.jan_only_root.nc +0 -0
  206. data/data/samples/reanalysis/ncep/T.jan_only_root.nc.yml +4 -0
  207. data/data/samples/reanalysis/ncep/UV.jan.nc +0 -0
  208. data/data/samples/reanalysis/ncep/UV.jan.nc.yml +10 -0
  209. data/data/samples/reanalysis/ncep/UV.jan.nc.yml.ja +11 -0
  210. data/data/samples/sonde_operational.yml +5 -0
  211. data/data/samples/sonde_operational/std_plev.yml +12 -0
  212. data/data/samples/sonde_operational/std_plev/41256.spl.nc +0 -0
  213. data/data/samples/sonde_operational/std_plev/42410.spl.nc +0 -0
  214. data/data/samples/sonde_operational/std_plev/43333.spl.nc +0 -0
  215. data/data/samples/sonde_operational/std_plev/43346.spl.nc +0 -0
  216. data/data/samples/sonde_operational/std_plev/48698.spl.nc +0 -0
  217. data/data/samples/sonde_operational/std_plev/61641.spl.nc +0 -0
  218. data/data/samples/sonde_operational/std_plev/63741.spl.nc +0 -0
  219. data/data/samples/sonde_operational/std_plev/67083.spl.nc +0 -0
  220. data/data/samples/sonde_operational/std_plev/72261.spl.nc +0 -0
  221. data/data/samples/sonde_operational/std_plev/76805.spl.nc +0 -0
  222. data/data/samples/sonde_operational/std_plev/82193.spl.nc +0 -0
  223. data/data/samples/sonde_operational/std_plev/91165.spl.nc +0 -0
  224. data/data/samples/sonde_operational/std_plev/91610.spl.nc +0 -0
  225. data/data/samples/sonde_operational/std_plev/91948.spl.nc +0 -0
  226. data/data/samples/sonde_operational/std_plev/94294.spl.nc +0 -0
  227. data/db/NetCDFparser.rb +406 -0
  228. data/db/create_derived_spatial_attributes.sql +12 -0
  229. data/db/draw_methods/line.yml +6 -0
  230. data/db/draw_methods/scatter.yml +38 -0
  231. data/db/draw_methods/tone.yml +64 -0
  232. data/db/draw_methods/vector.yml +19 -0
  233. data/db/dump_db.rb +43 -0
  234. data/db/functions/additions.yml +10 -0
  235. data/db/functions/cut.yml +10 -0
  236. data/db/functions/division.yml +10 -0
  237. data/db/functions/mean.yml +28 -0
  238. data/db/functions/multiplication.yml +10 -0
  239. data/db/functions/stddev.yml +28 -0
  240. data/db/functions/subtraction.yml +10 -0
  241. data/db/migrate/001_initial_scheme.rb +289 -0
  242. data/db/migrate/002_add_open_id_authentication_tables.rb +20 -0
  243. data/db/register_directory_tree.rb +760 -0
  244. data/db/restore_db.rb +60 -0
  245. data/gfdnavi-install +828 -0
  246. data/install.rb +828 -0
  247. data/lib/activerecord_gfdnavi.rb +31 -0
  248. data/lib/basic_authorization.rb +50 -0
  249. data/lib/create_activeresources.rb +108 -0
  250. data/lib/execute_analysis.rb +472 -0
  251. data/lib/file_gfdnavi.rb +38 -0
  252. data/lib/gphys_gfdnavi.rb +81 -0
  253. data/lib/localdir.rb +110 -0
  254. data/lib/login_system.rb +110 -0
  255. data/lib/multibytes.rb +20 -0
  256. data/lib/narray_yaml.rb +58 -0
  257. data/lib/no_rdb_base.rb +40 -0
  258. data/lib/opendapdir.rb +171 -0
  259. data/lib/tar.rb +127 -0
  260. data/lib/tasks/clean.rake +65 -0
  261. data/lib/tasks/setup.rake +316 -0
  262. data/lib/tasks/update.rake +62 -0
  263. data/lib/vizshot_gfdnavi.rb +224 -0
  264. data/public/crossdomain.xml +4 -0
  265. data/public/flex/NodeTreeDescriptor.as +55 -0
  266. data/public/flex/TreeNode.as +253 -0
  267. data/public/flex/finder.mxml +304 -0
  268. data/public/flex/finder.swf +0 -0
  269. data/public/flex/gfdnavi.mxml +52 -0
  270. data/public/flex/gfdnavi.swf +0 -0
  271. data/public/images/Help_S-shots/dir_tree_with_add.jpg +0 -0
  272. data/public/images/analyze.gif +0 -0
  273. data/public/images/circle.gif +0 -0
  274. data/public/images/create_from_analysis_button.png +0 -0
  275. data/public/images/delete.png +0 -0
  276. data/public/images/down.png +0 -0
  277. data/public/images/drawbutton.gif +0 -0
  278. data/public/images/gfdnavi_home_logo.png +0 -0
  279. data/public/images/gfdnavi_logo_big.png +0 -0
  280. data/public/images/gfdnavi_logo_med.png +0 -0
  281. data/public/images/gfdnavi_logo_mini.png +0 -0
  282. data/public/images/gfdnavi_logo_nobg_big.png +0 -0
  283. data/public/images/gfdnavi_logo_nobg_med.png +0 -0
  284. data/public/images/gfdnavi_logo_nobg_small.png +0 -0
  285. data/public/images/gfdnavi_logo_small.png +0 -0
  286. data/public/images/gfdnavi_logo_xsmall.png +0 -0
  287. data/public/images/hbar.png +0 -0
  288. data/public/images/helpmark16.png +0 -0
  289. data/public/images/helpmark18.png +0 -0
  290. data/public/images/kikyu_g.gif +0 -0
  291. data/public/images/kikyu_r.gif +0 -0
  292. data/public/images/map_icon_g.gif +0 -0
  293. data/public/images/map_icon_r.gif +0 -0
  294. data/public/images/new_knowledge.png +0 -0
  295. data/public/images/openid.png +0 -0
  296. data/public/images/read_in_the_form.png +0 -0
  297. data/public/images/slider_f.gif +0 -0
  298. data/public/images/slider_f_red.gif +0 -0
  299. data/public/images/star1.gif +0 -0
  300. data/public/images/star2.gif +0 -0
  301. data/public/images/startanim.gif +0 -0
  302. data/public/images/stopanim.gif +0 -0
  303. data/public/images/tree/DL.png +0 -0
  304. data/public/images/tree/anal_viz.png +0 -0
  305. data/public/images/tree/analyze_visualize_checked_items.png +0 -0
  306. data/public/images/tree/binary.png +0 -0
  307. data/public/images/tree/details.png +0 -0
  308. data/public/images/tree/download_checked_items.png +0 -0
  309. data/public/images/tree/folder.png +0 -0
  310. data/public/images/tree/folder_close.gif +0 -0
  311. data/public/images/tree/image2.png +0 -0
  312. data/public/images/tree/knowledge.png +0 -0
  313. data/public/images/tree/knowledges.png +0 -0
  314. data/public/images/tree/last.gif +0 -0
  315. data/public/images/tree/last.png +0 -0
  316. data/public/images/tree/minus.gif +0 -0
  317. data/public/images/tree/minus_simple.gif +0 -0
  318. data/public/images/tree/none.gif +0 -0
  319. data/public/images/tree/none.png +0 -0
  320. data/public/images/tree/plus.gif +0 -0
  321. data/public/images/tree/plus_simple.gif +0 -0
  322. data/public/images/tree/show.png +0 -0
  323. data/public/images/tree/show_checked_items.png +0 -0
  324. data/public/images/tree/t.gif +0 -0
  325. data/public/images/tree/t.png +0 -0
  326. data/public/images/tree/tate.gif +0 -0
  327. data/public/images/tree/tate.png +0 -0
  328. data/public/images/up.png +0 -0
  329. data/public/images/vbar.png +0 -0
  330. data/public/images/white.bmp +0 -0
  331. data/public/images/x.gif +0 -0
  332. data/public/index.html +100 -0
  333. data/public/javascripts/AC_OETags.js +269 -0
  334. data/public/javascripts/analysis.js +751 -0
  335. data/public/javascripts/application.js +29 -0
  336. data/public/javascripts/directory_tree.js +102 -0
  337. data/public/javascripts/draw_method.js +83 -0
  338. data/public/javascripts/excanvas.js +704 -0
  339. data/public/javascripts/function.js +107 -0
  340. data/public/javascripts/gfdnavi.js +175 -0
  341. data/public/javascripts/knowledge.js +384 -0
  342. data/public/javascripts/mapsearch.js +313 -0
  343. data/public/javascripts/progress.js +42 -0
  344. data/public/javascripts/resizable_box.js +164 -0
  345. data/public/javascripts/slider.js +260 -0
  346. data/public/javascripts/tab.js +17 -0
  347. data/public/javascripts/work_flow.js +452 -0
  348. data/public/stylesheets/analysis.css +111 -0
  349. data/public/stylesheets/description.css +71 -0
  350. data/public/stylesheets/gfdnavi.css +141 -0
  351. data/public/stylesheets/knowledge.css +218 -0
  352. data/public/stylesheets/search.css +184 -0
  353. data/public/stylesheets/tree.css +45 -0
  354. data/public/stylesheets/tree_for_ie.css +3 -0
  355. data/public/stylesheets/work_flow.css +78 -0
  356. data/script/cleaner +11 -0
  357. data/script/server_ssl +131 -0
  358. data/test/fixtures/diagram_cache_data.yml +5 -0
  359. data/test/fixtures/diagram_cache_sessions.yml +6 -0
  360. data/test/fixtures/diagram_caches.yml +6 -0
  361. data/test/fixtures/directories.yml +57 -0
  362. data/test/fixtures/draw_parameters.yml +6 -0
  363. data/test/fixtures/function_arguments.yml +15 -0
  364. data/test/fixtures/function_outputs.yml +15 -0
  365. data/test/fixtures/functions.yml +29 -0
  366. data/test/fixtures/group_members.yml +33 -0
  367. data/test/fixtures/groups.yml +25 -0
  368. data/test/fixtures/images.yml +12 -0
  369. data/test/fixtures/keyword_attributes.yml +73 -0
  370. data/test/fixtures/knowledges.yml +10 -0
  371. data/test/fixtures/node_relations.yml +11 -0
  372. data/test/fixtures/nodes.yml +298 -0
  373. data/test/fixtures/sign_up_users.yml +8 -0
  374. data/test/fixtures/spatial_and_time_attributes.yml +29 -0
  375. data/test/fixtures/user_mailer/authorization_inform +11 -0
  376. data/test/fixtures/user_mailer/signup_accepted +10 -0
  377. data/test/fixtures/user_mailer/signup_confirm +17 -0
  378. data/test/fixtures/user_mailer/signup_inform +10 -0
  379. data/test/fixtures/user_mailer/signup_rejected +9 -0
  380. data/test/fixtures/users.yml +31 -0
  381. data/test/fixtures/value_types.yml +10 -0
  382. data/test/fixtures/variables.yml +17 -0
  383. data/test/functional/analysis_controller_test.rb +169 -0
  384. data/test/functional/description_controller_test.rb +18 -0
  385. data/test/functional/function_controller_test.rb +18 -0
  386. data/test/functional/group_controller_test.rb +18 -0
  387. data/test/functional/search_controller_test.rb +83 -0
  388. data/test/functional/user_controller_test.rb +77 -0
  389. data/test/functional/webservice_analysis_api_test.rb +12 -0
  390. data/test/functional/work_flow_controller_test.rb +18 -0
  391. data/test/test_helper.rb +28 -0
  392. data/test/unit/diagram_cache_datum_test.rb +10 -0
  393. data/test/unit/diagram_cache_session_test.rb +10 -0
  394. data/test/unit/diagram_cache_test.rb +10 -0
  395. data/test/unit/directory_test.rb +49 -0
  396. data/test/unit/draw_parameter_test.rb +10 -0
  397. data/test/unit/function_argument_test.rb +10 -0
  398. data/test/unit/function_output_test.rb +10 -0
  399. data/test/unit/function_test.rb +10 -0
  400. data/test/unit/group_test.rb +48 -0
  401. data/test/unit/image_test.rb +13 -0
  402. data/test/unit/keyword_attribute_test.rb +33 -0
  403. data/test/unit/knowledge_test.rb +13 -0
  404. data/test/unit/node_relation_test.rb +20 -0
  405. data/test/unit/node_test.rb +85 -0
  406. data/test/unit/sign_up_user_test.rb +20 -0
  407. data/test/unit/spatial_and_time_attribute_test.rb +29 -0
  408. data/test/unit/user_mailer_test.rb +101 -0
  409. data/test/unit/user_test.rb +134 -0
  410. data/test/unit/value_type_test.rb +10 -0
  411. data/test/unit/variable_test.rb +35 -0
  412. data/vendor/plugins/acts_as_list/README +23 -0
  413. data/vendor/plugins/acts_as_list/init.rb +3 -0
  414. data/vendor/plugins/acts_as_list/lib/active_record/acts/list.rb +256 -0
  415. data/vendor/plugins/acts_as_list/test/list_test.rb +332 -0
  416. data/vendor/plugins/acts_as_tree/README +26 -0
  417. data/vendor/plugins/acts_as_tree/Rakefile +22 -0
  418. data/vendor/plugins/acts_as_tree/init.rb +1 -0
  419. data/vendor/plugins/acts_as_tree/lib/active_record/acts/tree.rb +96 -0
  420. data/vendor/plugins/acts_as_tree/test/abstract_unit.rb +0 -0
  421. data/vendor/plugins/acts_as_tree/test/acts_as_tree_test.rb +219 -0
  422. data/vendor/plugins/acts_as_tree/test/database.yml +0 -0
  423. data/vendor/plugins/acts_as_tree/test/fixtures/mixin.rb +0 -0
  424. data/vendor/plugins/acts_as_tree/test/fixtures/mixins.yml +0 -0
  425. data/vendor/plugins/acts_as_tree/test/schema.rb +0 -0
  426. data/vendor/plugins/will_paginate/CHANGELOG +92 -0
  427. data/vendor/plugins/will_paginate/LICENSE +18 -0
  428. data/vendor/plugins/will_paginate/README.rdoc +131 -0
  429. data/vendor/plugins/will_paginate/Rakefile +62 -0
  430. data/vendor/plugins/will_paginate/examples/apple-circle.gif +0 -0
  431. data/vendor/plugins/will_paginate/examples/index.haml +69 -0
  432. data/vendor/plugins/will_paginate/examples/index.html +92 -0
  433. data/vendor/plugins/will_paginate/examples/pagination.css +90 -0
  434. data/vendor/plugins/will_paginate/examples/pagination.sass +91 -0
  435. data/vendor/plugins/will_paginate/init.rb +1 -0
  436. data/vendor/plugins/will_paginate/lib/will_paginate.rb +86 -0
  437. data/vendor/plugins/will_paginate/lib/will_paginate/array.rb +16 -0
  438. data/vendor/plugins/will_paginate/lib/will_paginate/collection.rb +145 -0
  439. data/vendor/plugins/will_paginate/lib/will_paginate/core_ext.rb +32 -0
  440. data/vendor/plugins/will_paginate/lib/will_paginate/finder.rb +247 -0
  441. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope.rb +132 -0
  442. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb +39 -0
  443. data/vendor/plugins/will_paginate/lib/will_paginate/version.rb +9 -0
  444. data/vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb +373 -0
  445. data/vendor/plugins/will_paginate/will_paginate.gemspec +21 -0
  446. metadata +586 -0
@@ -0,0 +1,73 @@
1
+ <%
2
+ ndim = @analysis.dimensions.length
3
+ nvar = @analysis.variables.length
4
+ %>
5
+
6
+ <div>
7
+ <script>
8
+ <% if GFDNAVI_BENCHMARK %>
9
+ benchmark = true;
10
+ <% else %>
11
+ benchmark = false;
12
+ <% end %>
13
+ </script>
14
+ <%#= link_to_function image_tag("drawbutton.gif", :border => 0, :id => "draw_button_fig"), "drawExecute();", :id=>"draw_button", :style=>"margin:5;margin-left:1em" %>
15
+ <%= link_to image_tag("drawbutton.gif", :border => 0, :id => "draw_button_fig"), "#", :id=>"draw_button", :style=>"margin:5;margin-left:1em" %>
16
+ </div>
17
+
18
+ <hr style="margin-bottom:5"/>
19
+
20
+
21
+ <script>
22
+ tab_draw = new Tab();
23
+ </script>
24
+
25
+
26
+ <table cellpadding="0" cellspacing="0">
27
+
28
+ <tr>
29
+ <td class="tab_td"><div class="tab_sep">&nbsp;</div></td>
30
+ <td class="tab_td"><div id="draw_general_tab" class="tab_open" onclick="tab_draw.select(0);">
31
+ <span class="tab_font">General Settings</span>
32
+ </div></td>
33
+ <td class="tab_td"><div class="tab_sep">&nbsp;</div></td>
34
+ <td class="tab_td"><div id="draw_specific_tab" class="tab_close" onclick="tab_draw.select(1);">
35
+ <span class="tab_font">Specific Settings</span>
36
+ </div></td>
37
+ <td class="tab_td" width="100%"><div class="tab_sep"><span class="tab_font">&nbsp;</span></div></td>
38
+ </tr>
39
+
40
+ <tr>
41
+ <td colspan="5"><div class="tab_body">
42
+ <div id="draw_general_settings">
43
+ <% if ndim > 0 %>
44
+ <%= render(:partial => "draw_general_settings") %>
45
+ <% end %>
46
+ </div>
47
+ <div id="draw_specific_settings" style="display:none">
48
+ <% @draw_methods.each{|dm| %>
49
+ <div id="draw_<%=dm.name%>_settings">
50
+ <%= (src=dm.setting_html) ? render_erb(src) : "" %>
51
+ </div>
52
+ <% } %>
53
+ </div>
54
+ </div></td>
55
+ </tr>
56
+
57
+ </table>
58
+
59
+
60
+ <script>
61
+ tab_draw.tab_list[0] = $('draw_general_tab');
62
+ tab_draw.tab_list[1] = $('draw_specific_tab');
63
+ tab_draw.body_list[0] = $('draw_general_settings');
64
+ tab_draw.body_list[1] = $('draw_specific_settings');
65
+ </script>
66
+
67
+
68
+
69
+ <script>
70
+ if( $("analysis_settings") )
71
+ Element.hide("analysis_settings");
72
+ Element.show("draw_settings");
73
+ </script>
@@ -0,0 +1,19 @@
1
+ <% if @history && @history.length > 0 %>
2
+ <hr/>
3
+ History
4
+ <table>
5
+ <%
6
+ offset = @history.offset
7
+ (@history.length-1).downto(0) do |i|
8
+ %>
9
+ <tr>
10
+ <td width=30 align=right>
11
+ <%= i + offset + 1 %>
12
+ <td>
13
+ <td>
14
+ <%= link_to @history[i][1], :action=>"load_history", :id=>i %>
15
+ </td>
16
+ </tr>
17
+ <% end %>
18
+ </table>
19
+ <% end %>
@@ -0,0 +1,42 @@
1
+ <%
2
+ dcs = Array.new
3
+ vars = @analysis.variables
4
+ vars.each{|v|
5
+ v.diagram_caches.each{|dc|
6
+ if (len=dc.diagram_cache_sessions.find(:all, :conditions=>["share=?",true]).length) >= 1
7
+ dcs.push [len*0.1,dc]
8
+ end
9
+ }
10
+ }
11
+ dcs.uniq!
12
+ unless dcs.length == 0
13
+ total = 3
14
+ dcs.sort!{|a,b|b[0]<=>a[0]}
15
+
16
+ max = 5
17
+ dcs = dcs[0...[max,dcs.length].min]
18
+ %>
19
+ <p>
20
+ People who chose the variables saw the following diagrams<br/>
21
+ <table>
22
+ <% dcs.each{|score,dc| %>
23
+ <tr>
24
+ <td>
25
+ <a href="<%= url_for(:action=>'execute') %>?<%= Analysis.uri_params_from_vizshot(YAML.load(dc.vizshot)) %>"><%= dc.variables.collect{|v| v.name}.join(",") %>: <%= dc.label %></a>
26
+ </td>
27
+ <td>
28
+ <%
29
+ if score > 1
30
+ score = 1
31
+ elsif score < 0
32
+ score = 0
33
+ end
34
+ n = (total*score).floor
35
+ %>
36
+ <%= image_tag("star2.gif", :align=>"absmiddle")*n %><%= image_tag("star1.gif", :align=>"absmiddle")*(total-n) %>
37
+ </td>
38
+ </tr>
39
+ </p>
40
+ <% } %>
41
+ </table>
42
+ <% end %>
@@ -0,0 +1,44 @@
1
+ <h3> Save From</h3>
2
+
3
+ <%= form_remote_tag(:url => {:action => "save"}) %>
4
+
5
+ <table>
6
+ <tr>
7
+ <td><label for="save_name">name</label></td>
8
+ <td><%= text_field_tag("name", @name, :id => "save_name") %></td>
9
+ </tr>
10
+ <tr>
11
+ <td><label for="save_path">path</label></td>
12
+ <td>/<%= text_field_tag("path", nil, :id => "save_path") %>.<%= @suffix %></td>
13
+ </tr>
14
+ <tr>
15
+ <td><label>Keywords</label></td>
16
+ <td>
17
+ <table>
18
+ <thead>
19
+ <tr>
20
+ <th>name</th>
21
+ <th>value</th>
22
+ </tr>
23
+ </thead>
24
+ <tbody id="save_keywords">
25
+ <tr>
26
+ <td><%= text_field_tag("keywords[0][name]", nil, :id => "save_keywords_0_name") %></td>
27
+ <td><%= text_field_tag("keywords[0][name]", nil, :id => "save_keywords_0_name") %></td>
28
+ </tr>
29
+ </tbody>
30
+ </table>
31
+ <%= link_to_function("add another keyword", "addRowKeyword();") %>
32
+ </td>
33
+ </tr>
34
+ </table>
35
+ <script>
36
+ num_keywords = 0
37
+ </script>
38
+
39
+ <br/>
40
+ <%= hidden_field_tag("type", @type) %>
41
+ <%= hidden_field_tag("id", @id) %>
42
+ <%= submit_tag("save") %>
43
+
44
+ </form>
@@ -0,0 +1,66 @@
1
+ <%
2
+ for var in @variables
3
+ v_name, v_path, v_attrs, selected, flag, da = var
4
+ v_path = URI.escape(v_path, "[]")
5
+
6
+ name = "variables[#{v_path}]"
7
+ id = "variables_#{v_path}"
8
+ checked = selected ? "checked" : ""
9
+ %>
10
+ <nobr>
11
+ <input type="checkbox" id="<%= id %>" name="<%= name %>" value="1" <%= checked %> onclick="changeVariable()" />
12
+ <input type="hidden" name ="<%= name %>" value="0" />
13
+ <label id="<%= id %>_name" style="cursor:pointer" onmouseover="bgHighlight(this)" onmouseout="bgUnhighlight(this)"><%= h(v_name) %></label>
14
+ </nobr>
15
+ <script>
16
+ <%
17
+ desc = "<table>"
18
+ desc += "<tr><th colspan=2 align=left>#{v_path}</th></tr>"
19
+ desc += "<tr><th colspan=2 align=left>Attributes:</th></tr>"
20
+ v_attrs.each{|attr|
21
+ name = attr[0]
22
+ if attr[1].is_a?(NArray)
23
+ if attr[1].length == 1
24
+ value = attr[1][0].to_s
25
+ else
26
+ value = attr[1].to_a.inspect
27
+ end
28
+ else
29
+ value = attr[1]
30
+ end
31
+ desc += "<tr><th>#{h(name)}</th><td>#{h(value)}</td></tr>"
32
+ }
33
+ unless /tmp/ =~ v_path
34
+ desc += '<tr><td colspan="3">' + link_to('Show description', {:controller => "description", :action => "node", :path => v_path}) + '</td></tr>'
35
+ end
36
+ if flag
37
+ desc += '<tr><td colspan="3"><hr/></td></tr>'
38
+ if da
39
+ desc += '<tr><td colspan="3">' + link_to('download data', {:action => "download_data", :path => v_path}) + '</td></tr>'
40
+ end
41
+ unless GFDNAVI_DISABLE_USER && @user.nii
42
+ desc += '<tr><td colspan="3">' + link_to('save variable', :action => "save", :path => v_path, :type => "data") + '</td></tr>'
43
+ end
44
+ end
45
+ desc += "</table>"
46
+ %>
47
+ new PopupMenu($('<%= id %>_name'), '<%= escape_javascript(desc) %>');
48
+ </script>
49
+ <%
50
+ end
51
+ if @variables.length > 0
52
+ %>
53
+ <br/>
54
+ <%= link_to("clear variables", :action => "clear") %>
55
+ <%
56
+ end
57
+ if @user
58
+ %>
59
+ <hr/>
60
+ <% form_tag({:action=>"upload_file"}, :multipart=>true) do %>
61
+ <input type="file" name="file">
62
+ <%= submit_tag("upload") %>
63
+ <%
64
+ end
65
+ end
66
+ %>
@@ -0,0 +1,56 @@
1
+ <%
2
+ vars = @analysis.variables
3
+ nvars = vars.length
4
+ @num_for_each ||= nvars
5
+ @group_name ||= "group"
6
+ unless @order
7
+ @order = Hash.new
8
+ (nvars/@num_for_each).times{|n|
9
+ @order[n] = Array.new
10
+ @num_for_each.times{|i| @order[n][i] = n*@num_for_each+i}
11
+ }
12
+ end
13
+ unless @order_names
14
+ @order_names = Array.new
15
+ nvars.times{|i| @order_names[i] = i.to_s}
16
+ end
17
+ %>
18
+ <table>
19
+ <% (nvars/@num_for_each).times{|n| %>
20
+ <tr>
21
+ <% unless nvars == @num_for_each %>
22
+ <td><%=@group_name%><%=n%><td>
23
+ <% end %>
24
+ <td nowrap>
25
+ <%
26
+ @num_for_each.times{|i|
27
+ ni = @num_for_each*n+i
28
+ d_f = @order_type == "function" ? "function" : "draw"
29
+ %>
30
+ <label for="variables_order_<%=ni%>"><%=@order_names[i]%>:</label>
31
+ <select name="analysis[<%=d_f%>_variables_order][<%=n%>][<%=i%>]" id="<%=@order_type%>_variables_order_<%=ni%>" onChange="selectVarOrder(this,'<%=@order_type%>',<%=ni%>)">
32
+ <%
33
+ nvars.times{|j|
34
+ selected = j==@order[n][i] ? "selected" : ""
35
+ %>
36
+ <option value="<%=j%>" <%=selected%>><%=h(vars[j].name)%></option>
37
+ <% } %>
38
+ </select>
39
+ <% } %>
40
+ </td>
41
+ </tr>
42
+ <% } %>
43
+ </table>
44
+ <script>
45
+ variablesOrder["<%=@order_type%>"] = new Array(<%=nvars%>);
46
+ <%
47
+ (nvars/@num_for_each).times{|n|
48
+ @num_for_each.times{|i|
49
+ ni = @num_for_each*n+i
50
+ %>
51
+ variablesOrder["<%=@order_type%>"][<%=ni%>] = <%=@order[n][i]%>;
52
+ <%
53
+ }
54
+ }
55
+ %>
56
+ </script>
@@ -0,0 +1,195 @@
1
+ <script type="text/javascript" src="http://www.google.com/jsapi?key=<%= GFDNAVI_GOOGLE_MAP_KEY %>"></script>
2
+ <script>
3
+ if (typeof("google")=="object") google.load("maps", "2");
4
+ </script>
5
+
6
+ <% if @diagrams && @diagrams.length > 0 && !(GFDNAVI_DISABLE_USER && session[:user].nil?) %>
7
+ <body onload="drawKnowledgeFromAnalysisButton();">
8
+ <% end %>
9
+
10
+ <div id="messages" class="notice">
11
+ <% if flash[:messages] %>
12
+ <%= flash[:messages] %>
13
+ <% end %>
14
+ </div>
15
+
16
+ <div id="gmap" style="left:320px;top:150px;position:absolute;z-index:999;display:none;border:solid;border-width:3px;background:#ffffff">
17
+ <div class="menu_header">
18
+ <div style="float:right">
19
+ <%= link_to_function(image_tag("x.gif", :class => "delete"), "Element.hide('gmap')") %>
20
+ </div>
21
+ </div>
22
+ <div style="clear:right">
23
+ <div id="map" class="menu_body" style="width:500px;height:300px"></div>
24
+ </div>
25
+ </div>
26
+
27
+
28
+ <div id="analysis_menu">
29
+
30
+ <div id="variables" class="analysis_menu">
31
+ <div id="variables_header" class="menu_header">
32
+ <div style="float:right">
33
+ <%= link_to_function(image_tag("x.gif", :class => "delete"), "variablesBox.setHeight(0);") %>
34
+ </div>
35
+ <span class="tab_font">Variables</span>
36
+ </div>
37
+ <div class="menu_body">
38
+ <div id="variables_body">
39
+ <%= render(:partial => "variables") %>
40
+ </div>
41
+ </div>
42
+ </div>
43
+
44
+ <div id="action_form">
45
+
46
+ <div id="axes" class="analysis_menu">
47
+ <div id="axes_header" class="menu_header">
48
+ <div style="float:right">
49
+ <%= link_to_function(image_tag("x.gif", :class => "delete"), "axesBox.setHeight(0);") %>
50
+ </div>
51
+ <span class="tab_font">Axes</span>
52
+ </div>
53
+ <div class="menu_body">
54
+ <script>
55
+ var tab_axes = new Tab();
56
+ </script>
57
+ <table cellpadding="0" cellspacing="0">
58
+ <tr>
59
+ <td class="tab_td"><div class="tab_sep">&nbsp;</div></td>
60
+ <td class="tab_td"><div id="dimensions_tab" class="tab_open" onclick="tab_axes.select(0);">
61
+ <span class="tab_font">Dimensions</span>
62
+ </div></td>
63
+ <td class="tab_td" width="100%"><div class="tab_sep"><span class="tab_font">&nbsp;</span></div></td>
64
+ </tr>
65
+ <tr>
66
+ <td colspan="3"><div class="tab_body">
67
+ <div id="dimensions_setting">
68
+ <% if @analysis.dimensions.length > 0 %>
69
+ <%= render(:partial => "dimension_option") %>
70
+ <% end %>
71
+ </div>
72
+ </div></td>
73
+ </tr>
74
+ </table>
75
+ <script>
76
+ tab_axes.tab_list[0] = $('dimensions_tab');
77
+ tab_axes.body_list[0] = $('dimensions_setting');
78
+ </script>
79
+ </div>
80
+ </div>
81
+
82
+ <div id="options" class="analysis_menu">
83
+ <div id="options_header" class="menu_header">
84
+ <div style="float:right">
85
+ <%= link_to_function(image_tag("x.gif", :class => "delete"), "optionsBox.setHeight(0);") %>
86
+ </div>
87
+ <span class="tab_font">Options</span>
88
+ </div>
89
+ <div class="menu_body">
90
+ <script>
91
+ var tab_actions = new Tab();
92
+ </script>
93
+ <table cellpadding="0" cellspacing="0">
94
+ <tr>
95
+ <%
96
+ nactions = Analysis::ACTION_TYPE.length
97
+ nactions.times do |i|
98
+ action_name = Analysis::ACTION_TYPE[i]
99
+ class_name = i==@analysis.action_type ? "tab_open" : "tab_close"
100
+ %>
101
+ <td class="tab_td"><div class="tab_sep">&nbsp;</div></td>
102
+ <td class="tab_td"><div id="action_<%= action_name %>_tab" class="<%= class_name %>" onclick="tab_actions.select(<%= i %>);">
103
+ <span class="tab_font"><%= h(action_name.capitalize) %>
104
+ <%= help_popup( action_name+'_tab' ) %>
105
+ </span>
106
+ <script>
107
+ tab_actions.tab_list[<%= i %>] = $('action_<%= action_name %>_tab');
108
+ </script>
109
+ </div></td>
110
+ <% end %>
111
+ <td class="tab_td" width="100%"><div class="tab_sep"><span class="tab_font">&nbsp;</span></div></td>
112
+ </tr>
113
+ <tr>
114
+ <td colspan="<%= nactions*2+1 %>"><div class="tab_body">
115
+ <div id="draw_settings" style="display:none">
116
+ <% if @analysis.action_type == 0 %>
117
+ <%= render(:partial => "draw_settings") %>
118
+ <script>
119
+ Element.show('draw_settings');
120
+ </script>
121
+ <% end %>
122
+ </div>
123
+ <div id="analysis_settings" style="display:none">
124
+ <% if @analysis.action_type == 1 %>
125
+ <%= render(:partial => "analysis_settings") %>
126
+ <script>
127
+ Element.show('analysis_settings');
128
+ </script>
129
+ <% end %>
130
+ </div>
131
+ </div></td>
132
+ </tr>
133
+ </table>
134
+ <script>
135
+ tab_actions.body_list[0] = $('draw_settings');
136
+ tab_actions.body_list[1] = $('analysis_settings');
137
+ tab_actions.action_list[0] = "changeActionType(0);";
138
+ tab_actions.action_list[1] = "changeActionType(1);";
139
+ </script>
140
+ </div>
141
+
142
+ </div>
143
+ </div>
144
+
145
+ <script>
146
+ variablesBox = new ResizableBox($('variables'), 300, 75, false, true);
147
+ axesBox = new ResizableBox($('axes'), 300, null, false, true);
148
+ optionsBox = new ResizableBox($('options'), 300, null, false, true);
149
+ </script>
150
+
151
+ </div>
152
+
153
+
154
+ <div id="analysis_main">
155
+
156
+ <div id="progress"></div>
157
+
158
+ <div id="diagrams">
159
+ <%
160
+ if @diagrams
161
+ @diagrams.each_with_index{|dia,i|
162
+ @diagram = [i,dia]
163
+ %>
164
+ <%= render :partial => "diagram" %>
165
+ <%
166
+ }
167
+ end
168
+ %>
169
+ </div>
170
+ </div>
171
+
172
+ <div id="create_knowledge_from_analysis"></div>
173
+
174
+
175
+ <div style="clear:left">
176
+ <div id="history">
177
+ <%= render :partial => "history" %>
178
+ </div>
179
+ <hr/>
180
+ <div id="popular_diagrams" style="display:none">
181
+ <%= render :partial => "popular_diagrams" %>
182
+ </div>
183
+ </div>
184
+
185
+
186
+ <div id="script">
187
+ <script>
188
+ progressText = new ProgressText();
189
+ executable = <%= @analysis.dimensions.length > 0 %>;
190
+ action_type = <%= @analysis.action_type %>;
191
+ afterCallBack();
192
+ </script>
193
+ </div>
194
+
195
+ </body>