gfdnavi 1.3.0.0

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Files changed (446) hide show
  1. data/ChangeLog +10949 -0
  2. data/LICENCE.txt +57 -0
  3. data/Makefile +18 -0
  4. data/TODO +132 -0
  5. data/app/controllers/analysis_controller.rb +700 -0
  6. data/app/controllers/application.rb +41 -0
  7. data/app/controllers/draw_method_controller.rb +172 -0
  8. data/app/controllers/explorer_controller.rb +197 -0
  9. data/app/controllers/finder_controller.rb +331 -0
  10. data/app/controllers/function_controller.rb +204 -0
  11. data/app/controllers/group_controller.rb +115 -0
  12. data/app/controllers/keyword_attributes_controller.rb +52 -0
  13. data/app/controllers/knowledge_controller.rb +928 -0
  14. data/app/controllers/nodes_controller.rb +515 -0
  15. data/app/controllers/search_controller.rb +341 -0
  16. data/app/controllers/user_controller.rb +337 -0
  17. data/app/helpers/analysis_helper.rb +2 -0
  18. data/app/helpers/application_helper.rb +105 -0
  19. data/app/helpers/description_helper.rb +2 -0
  20. data/app/helpers/function_helper.rb +2 -0
  21. data/app/helpers/group_helper.rb +2 -0
  22. data/app/helpers/search_helper.rb +3 -0
  23. data/app/helpers/user_helper.rb +2 -0
  24. data/app/helpers/work_flow_helper.rb +92 -0
  25. data/app/models/actual_file.rb +3 -0
  26. data/app/models/analysis.rb +715 -0
  27. data/app/models/analysis_history.rb +42 -0
  28. data/app/models/cross_array.rb +22 -0
  29. data/app/models/cross_result.rb +254 -0
  30. data/app/models/derived_spatial_attribute.rb +3 -0
  31. data/app/models/diagram_cache.rb +16 -0
  32. data/app/models/diagram_cache_datum.rb +4 -0
  33. data/app/models/diagram_cache_session.rb +8 -0
  34. data/app/models/directory.rb +21 -0
  35. data/app/models/draw_method.rb +48 -0
  36. data/app/models/draw_method_attribute.rb +8 -0
  37. data/app/models/draw_parameter.rb +12 -0
  38. data/app/models/explorer_query.rb +354 -0
  39. data/app/models/explorer_result.rb +312 -0
  40. data/app/models/function.rb +75 -0
  41. data/app/models/function_argument.rb +6 -0
  42. data/app/models/function_output.rb +4 -0
  43. data/app/models/group.rb +153 -0
  44. data/app/models/image.rb +20 -0
  45. data/app/models/keyword_attribute.rb +179 -0
  46. data/app/models/knowledge.rb +94 -0
  47. data/app/models/knowledge_backup.rb +32 -0
  48. data/app/models/knowledge_figure.rb +16 -0
  49. data/app/models/knowledge_figure_backup.rb +16 -0
  50. data/app/models/knowledge_parser.rb +392 -0
  51. data/app/models/node.rb +605 -0
  52. data/app/models/node_entity_abstract.rb +112 -0
  53. data/app/models/node_lineage.rb +6 -0
  54. data/app/models/node_relation.rb +4 -0
  55. data/app/models/path_node.rb +60 -0
  56. data/app/models/query.rb +193 -0
  57. data/app/models/query_history.rb +12 -0
  58. data/app/models/results.rb +48 -0
  59. data/app/models/sign_up_user.rb +25 -0
  60. data/app/models/spatial_and_time_attribute.rb +11 -0
  61. data/app/models/user.rb +115 -0
  62. data/app/models/user_mailer.rb +48 -0
  63. data/app/models/value_type.rb +3 -0
  64. data/app/models/variable.rb +70 -0
  65. data/app/models/virtual_node.rb +457 -0
  66. data/app/views/analysis/__help_analysis_tab.en.html +57 -0
  67. data/app/views/analysis/__help_draw_share.en.html +12 -0
  68. data/app/views/analysis/__help_draw_tab.en.html +6 -0
  69. data/app/views/analysis/_analysis_function_settings.rhtml +61 -0
  70. data/app/views/analysis/_analysis_settings.rhtml +28 -0
  71. data/app/views/analysis/_diagram.rhtml +70 -0
  72. data/app/views/analysis/_dimension_option.rhtml +59 -0
  73. data/app/views/analysis/_draw_general_settings.rhtml +217 -0
  74. data/app/views/analysis/_draw_settings.rhtml +73 -0
  75. data/app/views/analysis/_history.rhtml +19 -0
  76. data/app/views/analysis/_popular_diagrams.rhtml +42 -0
  77. data/app/views/analysis/_save_form.rhtml +44 -0
  78. data/app/views/analysis/_variables.rhtml +66 -0
  79. data/app/views/analysis/_variables_order.rhtml +56 -0
  80. data/app/views/analysis/index.rhtml +195 -0
  81. data/app/views/analysis/preview.rhtml +3 -0
  82. data/app/views/analysis/save.rhtml +73 -0
  83. data/app/views/analysis/show_diagram.rhtml +42 -0
  84. data/app/views/cross/_display_map.rhtml +201 -0
  85. data/app/views/cross/_result.rhtml +205 -0
  86. data/app/views/cross/_show_result_tree.rhtml +40 -0
  87. data/app/views/cross/_show_results.rhtml +80 -0
  88. data/app/views/cross/_style.rhtml +21 -0
  89. data/app/views/cross/index.rhtml +271 -0
  90. data/app/views/draw_method/_edit_form.rhtml +110 -0
  91. data/app/views/draw_method/create.rhtml +8 -0
  92. data/app/views/draw_method/details.rhtml +113 -0
  93. data/app/views/draw_method/edit.rhtml +8 -0
  94. data/app/views/draw_method/list.rhtml +80 -0
  95. data/app/views/explorer/_display_map.rhtml +199 -0
  96. data/app/views/explorer/_show_result_tree.rhtml +40 -0
  97. data/app/views/explorer/_show_results.rhtml +101 -0
  98. data/app/views/explorer/_style.rhtml +21 -0
  99. data/app/views/explorer/index.rhtml +214 -0
  100. data/app/views/finder/_children.html.erb +84 -0
  101. data/app/views/finder/_children_details.html.erb +74 -0
  102. data/app/views/finder/_children_details_tr.html.erb +196 -0
  103. data/app/views/finder/create_tree.html.erb +15 -0
  104. data/app/views/finder/flex.html.erb +52 -0
  105. data/app/views/finder/index.html.erb +47 -0
  106. data/app/views/finder/show_details.html.erb +3 -0
  107. data/app/views/finder/show_images.html.erb +3 -0
  108. data/app/views/function/_edit_form.rhtml +106 -0
  109. data/app/views/function/create.rhtml +8 -0
  110. data/app/views/function/details.rhtml +96 -0
  111. data/app/views/function/edit.rhtml +8 -0
  112. data/app/views/function/list.rhtml +80 -0
  113. data/app/views/group/add_member.rhtml +13 -0
  114. data/app/views/group/change_owner.rhtml +15 -0
  115. data/app/views/group/create.rhtml +11 -0
  116. data/app/views/group/delete_member.rhtml +14 -0
  117. data/app/views/group/list.rhtml +63 -0
  118. data/app/views/knowledge/_backup.rhtml +135 -0
  119. data/app/views/knowledge/_category.rhtml +58 -0
  120. data/app/views/knowledge/_category_list.rhtml +34 -0
  121. data/app/views/knowledge/_category_table.rhtml +23 -0
  122. data/app/views/knowledge/_comment.rhtml +64 -0
  123. data/app/views/knowledge/_comment_input_form.rhtml +19 -0
  124. data/app/views/knowledge/_comments.rhtml +84 -0
  125. data/app/views/knowledge/_form.rhtml +139 -0
  126. data/app/views/knowledge/_group_figure_form.rhtml +187 -0
  127. data/app/views/knowledge/_layout_figure.rhtml +61 -0
  128. data/app/views/knowledge/_layout_figures_in_a_row_above_text.rhtml +42 -0
  129. data/app/views/knowledge/_layout_figures_under_text.rhtml +45 -0
  130. data/app/views/knowledge/_layout_one_figure_above_text.rhtml +28 -0
  131. data/app/views/knowledge/_summary.rhtml +21 -0
  132. data/app/views/knowledge/edit.rhtml +37 -0
  133. data/app/views/knowledge/list.rhtml +287 -0
  134. data/app/views/knowledge/new.rhtml +23 -0
  135. data/app/views/knowledge/new_from_analysis.rhtml +21 -0
  136. data/app/views/knowledge/show.rhtml +196 -0
  137. data/app/views/layouts/gfdnavi.rhtml +105 -0
  138. data/app/views/nodes/_ancestors.html.erb +89 -0
  139. data/app/views/nodes/_description_methods_table.html.erb +75 -0
  140. data/app/views/nodes/_mode.html.erb +16 -0
  141. data/app/views/nodes/description.html.erb +181 -0
  142. data/app/views/nodes/description_methods.html.erb +1 -0
  143. data/app/views/nodes/edit.html.erb +73 -0
  144. data/app/views/nodes/index.html.erb +25 -0
  145. data/app/views/nodes/show.html.erb +20 -0
  146. data/app/views/search/_children_details_mapsearch.rhtml +68 -0
  147. data/app/views/search/_children_details_tr.rhtml +205 -0
  148. data/app/views/search/_show_grouplist.rhtml +74 -0
  149. data/app/views/search/_show_results.rhtml +43 -0
  150. data/app/views/search/_show_results_global.rhtml +36 -0
  151. data/app/views/search/_show_results_partial.rhtml +39 -0
  152. data/app/views/search/_show_results_partial_groupbyfile.rhtml +50 -0
  153. data/app/views/search/_show_variablelist.rhtml +28 -0
  154. data/app/views/search/mapsearch.rhtml +176 -0
  155. data/app/views/search/remapsearch.rjs +18 -0
  156. data/app/views/search/show_details.rhtml +3 -0
  157. data/app/views/user/add_user.rhtml +30 -0
  158. data/app/views/user/change_password.rhtml +25 -0
  159. data/app/views/user/edit.html.erb +50 -0
  160. data/app/views/user/index.rhtml +162 -0
  161. data/app/views/user/login.rhtml +41 -0
  162. data/app/views/user/logout.rhtml +4 -0
  163. data/app/views/user/signup.rhtml +36 -0
  164. data/app/views/user/signup_succeeded.rhtml +36 -0
  165. data/app/views/user_mailer/authorization_inform.rhtml +15 -0
  166. data/app/views/user_mailer/signup_accepted.rhtml +12 -0
  167. data/app/views/user_mailer/signup_confirm.rhtml +14 -0
  168. data/app/views/user_mailer/signup_inform.rhtml +13 -0
  169. data/app/views/user_mailer/signup_rejected.rhtml +11 -0
  170. data/app/views/work_flow/_push_wsdls.rhtml +55 -0
  171. data/app/views/work_flow/index.rhtml +46 -0
  172. data/config/database.yml.example +35 -0
  173. data/config/environment.rb +68 -0
  174. data/config/gfdnavi.yml.example +95 -0
  175. data/config/load_config.rb +151 -0
  176. data/config/routes.rb +35 -0
  177. data/consistency_checker.rb +129 -0
  178. data/data/gfdnavi_docs/how_to_draw_multiple_images.knlge +68 -0
  179. data/data/gfdnavi_docs/how_to_knowledge.knlge +138 -0
  180. data/data/gfdnavi_docs/how_to_write_document_about_Gfdnavi.knlge +30 -0
  181. data/data/samples/jmadata.SIGEN +8 -0
  182. data/data/samples/jmadata.yml +6 -0
  183. data/data/samples/jmadata/MSM-P/2006.nc.yml +2 -0
  184. data/data/samples/jmadata/MSM-P/2006.yml +17 -0
  185. data/data/samples/jmadata/MSM-P/2006/0101.nc +0 -0
  186. data/data/samples/jmadata/MSM-P/2006/0101.nc.yml +13 -0
  187. data/data/samples/jmadata/MSM-P/2006/0102.nc +0 -0
  188. data/data/samples/jmadata/MSM-P/2006/0103.nc +0 -0
  189. data/data/samples/jmadata/MSM-P/2006/0104.nc +0 -0
  190. data/data/samples/jmadata/MSM-P/2006/0105.nc +0 -0
  191. data/data/samples/jmadata/MSM-P/2006/010[1-3].nc.yml +2 -0
  192. data/data/samples/jmadata/MSM-P/2006/skip_data.rb +96 -0
  193. data/data/samples/jmadata/MSM-P/2006/skip_data.sh +6 -0
  194. data/data/samples/reanalysis.SIGEN +8 -0
  195. data/data/samples/reanalysis/era40.SIGEN +8 -0
  196. data/data/samples/reanalysis/era40.yml +2 -0
  197. data/data/samples/reanalysis/era40/t.jan.nc +0 -0
  198. data/data/samples/reanalysis/era40/t.jan.nc.yml +1 -0
  199. data/data/samples/reanalysis/ncep.SIGEN +9 -0
  200. data/data/samples/reanalysis/ncep/T.jan.100hPa.png +0 -0
  201. data/data/samples/reanalysis/ncep/T.jan.100hPa.png.yml +43 -0
  202. data/data/samples/reanalysis/ncep/T.jan.nc +0 -0
  203. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc +0 -0
  204. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc.yml +8 -0
  205. data/data/samples/reanalysis/ncep/T.jan_only_root.nc +0 -0
  206. data/data/samples/reanalysis/ncep/T.jan_only_root.nc.yml +4 -0
  207. data/data/samples/reanalysis/ncep/UV.jan.nc +0 -0
  208. data/data/samples/reanalysis/ncep/UV.jan.nc.yml +10 -0
  209. data/data/samples/reanalysis/ncep/UV.jan.nc.yml.ja +11 -0
  210. data/data/samples/sonde_operational.yml +5 -0
  211. data/data/samples/sonde_operational/std_plev.yml +12 -0
  212. data/data/samples/sonde_operational/std_plev/41256.spl.nc +0 -0
  213. data/data/samples/sonde_operational/std_plev/42410.spl.nc +0 -0
  214. data/data/samples/sonde_operational/std_plev/43333.spl.nc +0 -0
  215. data/data/samples/sonde_operational/std_plev/43346.spl.nc +0 -0
  216. data/data/samples/sonde_operational/std_plev/48698.spl.nc +0 -0
  217. data/data/samples/sonde_operational/std_plev/61641.spl.nc +0 -0
  218. data/data/samples/sonde_operational/std_plev/63741.spl.nc +0 -0
  219. data/data/samples/sonde_operational/std_plev/67083.spl.nc +0 -0
  220. data/data/samples/sonde_operational/std_plev/72261.spl.nc +0 -0
  221. data/data/samples/sonde_operational/std_plev/76805.spl.nc +0 -0
  222. data/data/samples/sonde_operational/std_plev/82193.spl.nc +0 -0
  223. data/data/samples/sonde_operational/std_plev/91165.spl.nc +0 -0
  224. data/data/samples/sonde_operational/std_plev/91610.spl.nc +0 -0
  225. data/data/samples/sonde_operational/std_plev/91948.spl.nc +0 -0
  226. data/data/samples/sonde_operational/std_plev/94294.spl.nc +0 -0
  227. data/db/NetCDFparser.rb +406 -0
  228. data/db/create_derived_spatial_attributes.sql +12 -0
  229. data/db/draw_methods/line.yml +6 -0
  230. data/db/draw_methods/scatter.yml +38 -0
  231. data/db/draw_methods/tone.yml +64 -0
  232. data/db/draw_methods/vector.yml +19 -0
  233. data/db/dump_db.rb +43 -0
  234. data/db/functions/additions.yml +10 -0
  235. data/db/functions/cut.yml +10 -0
  236. data/db/functions/division.yml +10 -0
  237. data/db/functions/mean.yml +28 -0
  238. data/db/functions/multiplication.yml +10 -0
  239. data/db/functions/stddev.yml +28 -0
  240. data/db/functions/subtraction.yml +10 -0
  241. data/db/migrate/001_initial_scheme.rb +289 -0
  242. data/db/migrate/002_add_open_id_authentication_tables.rb +20 -0
  243. data/db/register_directory_tree.rb +760 -0
  244. data/db/restore_db.rb +60 -0
  245. data/gfdnavi-install +828 -0
  246. data/install.rb +828 -0
  247. data/lib/activerecord_gfdnavi.rb +31 -0
  248. data/lib/basic_authorization.rb +50 -0
  249. data/lib/create_activeresources.rb +108 -0
  250. data/lib/execute_analysis.rb +472 -0
  251. data/lib/file_gfdnavi.rb +38 -0
  252. data/lib/gphys_gfdnavi.rb +81 -0
  253. data/lib/localdir.rb +110 -0
  254. data/lib/login_system.rb +110 -0
  255. data/lib/multibytes.rb +20 -0
  256. data/lib/narray_yaml.rb +58 -0
  257. data/lib/no_rdb_base.rb +40 -0
  258. data/lib/opendapdir.rb +171 -0
  259. data/lib/tar.rb +127 -0
  260. data/lib/tasks/clean.rake +65 -0
  261. data/lib/tasks/setup.rake +316 -0
  262. data/lib/tasks/update.rake +62 -0
  263. data/lib/vizshot_gfdnavi.rb +224 -0
  264. data/public/crossdomain.xml +4 -0
  265. data/public/flex/NodeTreeDescriptor.as +55 -0
  266. data/public/flex/TreeNode.as +253 -0
  267. data/public/flex/finder.mxml +304 -0
  268. data/public/flex/finder.swf +0 -0
  269. data/public/flex/gfdnavi.mxml +52 -0
  270. data/public/flex/gfdnavi.swf +0 -0
  271. data/public/images/Help_S-shots/dir_tree_with_add.jpg +0 -0
  272. data/public/images/analyze.gif +0 -0
  273. data/public/images/circle.gif +0 -0
  274. data/public/images/create_from_analysis_button.png +0 -0
  275. data/public/images/delete.png +0 -0
  276. data/public/images/down.png +0 -0
  277. data/public/images/drawbutton.gif +0 -0
  278. data/public/images/gfdnavi_home_logo.png +0 -0
  279. data/public/images/gfdnavi_logo_big.png +0 -0
  280. data/public/images/gfdnavi_logo_med.png +0 -0
  281. data/public/images/gfdnavi_logo_mini.png +0 -0
  282. data/public/images/gfdnavi_logo_nobg_big.png +0 -0
  283. data/public/images/gfdnavi_logo_nobg_med.png +0 -0
  284. data/public/images/gfdnavi_logo_nobg_small.png +0 -0
  285. data/public/images/gfdnavi_logo_small.png +0 -0
  286. data/public/images/gfdnavi_logo_xsmall.png +0 -0
  287. data/public/images/hbar.png +0 -0
  288. data/public/images/helpmark16.png +0 -0
  289. data/public/images/helpmark18.png +0 -0
  290. data/public/images/kikyu_g.gif +0 -0
  291. data/public/images/kikyu_r.gif +0 -0
  292. data/public/images/map_icon_g.gif +0 -0
  293. data/public/images/map_icon_r.gif +0 -0
  294. data/public/images/new_knowledge.png +0 -0
  295. data/public/images/openid.png +0 -0
  296. data/public/images/read_in_the_form.png +0 -0
  297. data/public/images/slider_f.gif +0 -0
  298. data/public/images/slider_f_red.gif +0 -0
  299. data/public/images/star1.gif +0 -0
  300. data/public/images/star2.gif +0 -0
  301. data/public/images/startanim.gif +0 -0
  302. data/public/images/stopanim.gif +0 -0
  303. data/public/images/tree/DL.png +0 -0
  304. data/public/images/tree/anal_viz.png +0 -0
  305. data/public/images/tree/analyze_visualize_checked_items.png +0 -0
  306. data/public/images/tree/binary.png +0 -0
  307. data/public/images/tree/details.png +0 -0
  308. data/public/images/tree/download_checked_items.png +0 -0
  309. data/public/images/tree/folder.png +0 -0
  310. data/public/images/tree/folder_close.gif +0 -0
  311. data/public/images/tree/image2.png +0 -0
  312. data/public/images/tree/knowledge.png +0 -0
  313. data/public/images/tree/knowledges.png +0 -0
  314. data/public/images/tree/last.gif +0 -0
  315. data/public/images/tree/last.png +0 -0
  316. data/public/images/tree/minus.gif +0 -0
  317. data/public/images/tree/minus_simple.gif +0 -0
  318. data/public/images/tree/none.gif +0 -0
  319. data/public/images/tree/none.png +0 -0
  320. data/public/images/tree/plus.gif +0 -0
  321. data/public/images/tree/plus_simple.gif +0 -0
  322. data/public/images/tree/show.png +0 -0
  323. data/public/images/tree/show_checked_items.png +0 -0
  324. data/public/images/tree/t.gif +0 -0
  325. data/public/images/tree/t.png +0 -0
  326. data/public/images/tree/tate.gif +0 -0
  327. data/public/images/tree/tate.png +0 -0
  328. data/public/images/up.png +0 -0
  329. data/public/images/vbar.png +0 -0
  330. data/public/images/white.bmp +0 -0
  331. data/public/images/x.gif +0 -0
  332. data/public/index.html +100 -0
  333. data/public/javascripts/AC_OETags.js +269 -0
  334. data/public/javascripts/analysis.js +751 -0
  335. data/public/javascripts/application.js +29 -0
  336. data/public/javascripts/directory_tree.js +102 -0
  337. data/public/javascripts/draw_method.js +83 -0
  338. data/public/javascripts/excanvas.js +704 -0
  339. data/public/javascripts/function.js +107 -0
  340. data/public/javascripts/gfdnavi.js +175 -0
  341. data/public/javascripts/knowledge.js +384 -0
  342. data/public/javascripts/mapsearch.js +313 -0
  343. data/public/javascripts/progress.js +42 -0
  344. data/public/javascripts/resizable_box.js +164 -0
  345. data/public/javascripts/slider.js +260 -0
  346. data/public/javascripts/tab.js +17 -0
  347. data/public/javascripts/work_flow.js +452 -0
  348. data/public/stylesheets/analysis.css +111 -0
  349. data/public/stylesheets/description.css +71 -0
  350. data/public/stylesheets/gfdnavi.css +141 -0
  351. data/public/stylesheets/knowledge.css +218 -0
  352. data/public/stylesheets/search.css +184 -0
  353. data/public/stylesheets/tree.css +45 -0
  354. data/public/stylesheets/tree_for_ie.css +3 -0
  355. data/public/stylesheets/work_flow.css +78 -0
  356. data/script/cleaner +11 -0
  357. data/script/server_ssl +131 -0
  358. data/test/fixtures/diagram_cache_data.yml +5 -0
  359. data/test/fixtures/diagram_cache_sessions.yml +6 -0
  360. data/test/fixtures/diagram_caches.yml +6 -0
  361. data/test/fixtures/directories.yml +57 -0
  362. data/test/fixtures/draw_parameters.yml +6 -0
  363. data/test/fixtures/function_arguments.yml +15 -0
  364. data/test/fixtures/function_outputs.yml +15 -0
  365. data/test/fixtures/functions.yml +29 -0
  366. data/test/fixtures/group_members.yml +33 -0
  367. data/test/fixtures/groups.yml +25 -0
  368. data/test/fixtures/images.yml +12 -0
  369. data/test/fixtures/keyword_attributes.yml +73 -0
  370. data/test/fixtures/knowledges.yml +10 -0
  371. data/test/fixtures/node_relations.yml +11 -0
  372. data/test/fixtures/nodes.yml +298 -0
  373. data/test/fixtures/sign_up_users.yml +8 -0
  374. data/test/fixtures/spatial_and_time_attributes.yml +29 -0
  375. data/test/fixtures/user_mailer/authorization_inform +11 -0
  376. data/test/fixtures/user_mailer/signup_accepted +10 -0
  377. data/test/fixtures/user_mailer/signup_confirm +17 -0
  378. data/test/fixtures/user_mailer/signup_inform +10 -0
  379. data/test/fixtures/user_mailer/signup_rejected +9 -0
  380. data/test/fixtures/users.yml +31 -0
  381. data/test/fixtures/value_types.yml +10 -0
  382. data/test/fixtures/variables.yml +17 -0
  383. data/test/functional/analysis_controller_test.rb +169 -0
  384. data/test/functional/description_controller_test.rb +18 -0
  385. data/test/functional/function_controller_test.rb +18 -0
  386. data/test/functional/group_controller_test.rb +18 -0
  387. data/test/functional/search_controller_test.rb +83 -0
  388. data/test/functional/user_controller_test.rb +77 -0
  389. data/test/functional/webservice_analysis_api_test.rb +12 -0
  390. data/test/functional/work_flow_controller_test.rb +18 -0
  391. data/test/test_helper.rb +28 -0
  392. data/test/unit/diagram_cache_datum_test.rb +10 -0
  393. data/test/unit/diagram_cache_session_test.rb +10 -0
  394. data/test/unit/diagram_cache_test.rb +10 -0
  395. data/test/unit/directory_test.rb +49 -0
  396. data/test/unit/draw_parameter_test.rb +10 -0
  397. data/test/unit/function_argument_test.rb +10 -0
  398. data/test/unit/function_output_test.rb +10 -0
  399. data/test/unit/function_test.rb +10 -0
  400. data/test/unit/group_test.rb +48 -0
  401. data/test/unit/image_test.rb +13 -0
  402. data/test/unit/keyword_attribute_test.rb +33 -0
  403. data/test/unit/knowledge_test.rb +13 -0
  404. data/test/unit/node_relation_test.rb +20 -0
  405. data/test/unit/node_test.rb +85 -0
  406. data/test/unit/sign_up_user_test.rb +20 -0
  407. data/test/unit/spatial_and_time_attribute_test.rb +29 -0
  408. data/test/unit/user_mailer_test.rb +101 -0
  409. data/test/unit/user_test.rb +134 -0
  410. data/test/unit/value_type_test.rb +10 -0
  411. data/test/unit/variable_test.rb +35 -0
  412. data/vendor/plugins/acts_as_list/README +23 -0
  413. data/vendor/plugins/acts_as_list/init.rb +3 -0
  414. data/vendor/plugins/acts_as_list/lib/active_record/acts/list.rb +256 -0
  415. data/vendor/plugins/acts_as_list/test/list_test.rb +332 -0
  416. data/vendor/plugins/acts_as_tree/README +26 -0
  417. data/vendor/plugins/acts_as_tree/Rakefile +22 -0
  418. data/vendor/plugins/acts_as_tree/init.rb +1 -0
  419. data/vendor/plugins/acts_as_tree/lib/active_record/acts/tree.rb +96 -0
  420. data/vendor/plugins/acts_as_tree/test/abstract_unit.rb +0 -0
  421. data/vendor/plugins/acts_as_tree/test/acts_as_tree_test.rb +219 -0
  422. data/vendor/plugins/acts_as_tree/test/database.yml +0 -0
  423. data/vendor/plugins/acts_as_tree/test/fixtures/mixin.rb +0 -0
  424. data/vendor/plugins/acts_as_tree/test/fixtures/mixins.yml +0 -0
  425. data/vendor/plugins/acts_as_tree/test/schema.rb +0 -0
  426. data/vendor/plugins/will_paginate/CHANGELOG +92 -0
  427. data/vendor/plugins/will_paginate/LICENSE +18 -0
  428. data/vendor/plugins/will_paginate/README.rdoc +131 -0
  429. data/vendor/plugins/will_paginate/Rakefile +62 -0
  430. data/vendor/plugins/will_paginate/examples/apple-circle.gif +0 -0
  431. data/vendor/plugins/will_paginate/examples/index.haml +69 -0
  432. data/vendor/plugins/will_paginate/examples/index.html +92 -0
  433. data/vendor/plugins/will_paginate/examples/pagination.css +90 -0
  434. data/vendor/plugins/will_paginate/examples/pagination.sass +91 -0
  435. data/vendor/plugins/will_paginate/init.rb +1 -0
  436. data/vendor/plugins/will_paginate/lib/will_paginate.rb +86 -0
  437. data/vendor/plugins/will_paginate/lib/will_paginate/array.rb +16 -0
  438. data/vendor/plugins/will_paginate/lib/will_paginate/collection.rb +145 -0
  439. data/vendor/plugins/will_paginate/lib/will_paginate/core_ext.rb +32 -0
  440. data/vendor/plugins/will_paginate/lib/will_paginate/finder.rb +247 -0
  441. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope.rb +132 -0
  442. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb +39 -0
  443. data/vendor/plugins/will_paginate/lib/will_paginate/version.rb +9 -0
  444. data/vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb +373 -0
  445. data/vendor/plugins/will_paginate/will_paginate.gemspec +21 -0
  446. metadata +586 -0
@@ -0,0 +1,77 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+ require 'user_controller'
3
+
4
+ # Raise errors beyond the default web-based presentation
5
+ class UserController; def rescue_action(e) raise e end; end
6
+
7
+ class UserControllerTest < Test::Unit::TestCase
8
+ self.use_instantiated_fixtures = true
9
+
10
+ fixtures :users
11
+
12
+ def setup
13
+
14
+ @controller = UserController.new
15
+ @request, @response = ActionController::TestRequest.new, ActionController::TestResponse.new
16
+ @request.host = "localhost"
17
+ end
18
+
19
+ def test_auth_bob
20
+ @request.session['return-to'] = "/bogus/location"
21
+
22
+ post :login, "user_login" => "bob", "user_password" => "test"
23
+ assert_session_has "user"
24
+
25
+ assert_equal @bob, @response.session["user"]
26
+
27
+ assert_redirected_to "/bogus/location"
28
+ end
29
+
30
+ def test_signup
31
+
32
+ post :login, "user_login" => "root", "user_password" => "rootroot"
33
+
34
+ @request.session['return-to'] = "/bogus/location"
35
+
36
+ post :signup, "user" => { "login" => "newbob", "password" => "newpassword", "password_confirmation" => "newpassword" }
37
+ assert_session_has "user"
38
+
39
+ assert_redirected_to "/bogus/location"
40
+ end
41
+
42
+ def test_bad_signup
43
+ @request.session['return-to'] = "/bogus/location"
44
+
45
+ post :signup, "user" => { "login" => "newbob", "password" => "newpassword", "password_confirmation" => "wrong" }
46
+ # assert_invalid_column_on_record "user", "password"
47
+ assert_response 302
48
+
49
+ post :signup, "user" => { "login" => "yo", "password" => "newpassword", "password_confirmation" => "newpassword" }
50
+ # assert_invalid_column_on_record "user", "login"
51
+ assert_response 302
52
+
53
+ post :signup, "user" => { "login" => "yo", "password" => "newpassword", "password_confirmation" => "wrong" }
54
+ # assert_invalid_column_on_record "user", ["login", "password"]
55
+ assert_response 302
56
+ end
57
+
58
+ def test_invalid_login
59
+ post :login, "user_login" => "bob", "user_password" => "not_correct"
60
+
61
+ assert_session_has_no "user"
62
+
63
+ # assert_template_has "message"
64
+ assert_template_has "login"
65
+ end
66
+
67
+ def test_login_logoff
68
+
69
+ post :login, "user_login" => "bob", "user_password" => "test"
70
+ assert_session_has "user"
71
+
72
+ get :logout
73
+ assert_session_has_no "user"
74
+
75
+ end
76
+
77
+ end
@@ -0,0 +1,12 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+ require 'webservice_analysis_controller'
3
+
4
+ class WebserviceAnalysisController; def rescue_action(e) raise e end; end
5
+
6
+ class WebserviceAnalysisControllerApiTest < Test::Unit::TestCase
7
+ def setup
8
+ @controller = WebserviceAnalysisController.new
9
+ @request = ActionController::TestRequest.new
10
+ @response = ActionController::TestResponse.new
11
+ end
12
+ end
@@ -0,0 +1,18 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+ require 'work_flow_controller'
3
+
4
+ # Re-raise errors caught by the controller.
5
+ class WorkFlowController; def rescue_action(e) raise e end; end
6
+
7
+ class WorkFlowControllerTest < Test::Unit::TestCase
8
+ def setup
9
+ @controller = WorkFlowController.new
10
+ @request = ActionController::TestRequest.new
11
+ @response = ActionController::TestResponse.new
12
+ end
13
+
14
+ # Replace this with your real tests.
15
+ def test_truth
16
+ assert true
17
+ end
18
+ end
@@ -0,0 +1,28 @@
1
+ ENV["RAILS_ENV"] = "test"
2
+ require File.expand_path(File.dirname(__FILE__) + "/../config/environment")
3
+ require 'test_help'
4
+
5
+ class Test::Unit::TestCase
6
+ # Transactional fixtures accelerate your tests by wrapping each test method
7
+ # in a transaction that's rolled back on completion. This ensures that the
8
+ # test database remains unchanged so your fixtures don't have to be reloaded
9
+ # between every test method. Fewer database queries means faster tests.
10
+ #
11
+ # Read Mike Clark's excellent walkthrough at
12
+ # http://clarkware.com/cgi/blosxom/2005/10/24#Rails10FastTesting
13
+ #
14
+ # Every Active Record database supports transactions except MyISAM tables
15
+ # in MySQL. Turn off transactional fixtures in this case; however, if you
16
+ # don't care one way or the other, switching from MyISAM to InnoDB tables
17
+ # is recommended.
18
+ self.use_transactional_fixtures = true
19
+
20
+ # Instantiated fixtures are slow, but give you @david where otherwise you
21
+ # would need people(:david). If you don't want to migrate your existing
22
+ # test cases which use the @david style and don't mind the speed hit (each
23
+ # instantiated fixtures translates to a database query per test method),
24
+ # then set this back to true.
25
+ self.use_instantiated_fixtures = false
26
+
27
+ # Add more helper methods to be used by all tests here...
28
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class DiagramCacheDatumTest < Test::Unit::TestCase
4
+ fixtures :diagram_cache_data
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class DiagramCacheSessionTest < Test::Unit::TestCase
4
+ fixtures :diagram_cache_sessions
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class FigureCacheTest < Test::Unit::TestCase
4
+ fixtures :diagram_caches
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,49 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+ require File.expand_path(File.dirname(__FILE__) + "/../../lib/narray_yaml")
3
+
4
+ class DirectoryTest < Test::Unit::TestCase
5
+ fixtures :directories, :nodes, :users, :groups
6
+
7
+ def setup
8
+ @dir_reanalysis = Directory.find(3) # reanalysis
9
+ @root = User.find_by_login("root")
10
+ end
11
+
12
+ def test_db
13
+ reanalysis = directories(:reanalysis)
14
+ assert_kind_of Directory, @dir_reanalysis
15
+ assert_equal reanalysis.id, @dir_reanalysis.id
16
+ assert_equal reanalysis.plain_file, @dir_reanalysis.plain_file
17
+ assert_equal reanalysis.node, @dir_reanalysis.node
18
+ assert_equal reanalysis.name, @dir_reanalysis.name
19
+ assert_equal Node.find_by_path("/samples"), @dir_reanalysis.parent
20
+ end
21
+
22
+ def test_create
23
+ dir = Directory.new
24
+ assert_equal Node::DIRECTORY, dir.node.node_type
25
+ end
26
+
27
+ def test_update
28
+ end
29
+
30
+ def test_children
31
+ ncep_jan = directories(:ncep_t_jan)
32
+ children = @dir_reanalysis.children(false,:user=>@root)
33
+ assert_equal 2, children.length
34
+ assert_kind_of Node, children[1]
35
+ assert_kind_of Directory, children[1].entity
36
+ assert children[1].children.include?( ncep_jan.node )
37
+ ncep = @dir_reanalysis.children.find(:first, :conditions => 'name = "ncep"')
38
+ assert_kind_of Directory, ncep.entity
39
+ assert_equal %w(T.jan.100hPa.png T.jan.nc T.jan.zonal_mean.nc UV.jan.nc).sort, ncep.children.collect{|n| n.name}.sort
40
+ end
41
+
42
+ def test_variables
43
+ ncep = @dir_reanalysis.node.children.find(:first, :conditions => 'name = "ncep"')
44
+ ncep_jan = ncep.children.find(:first, :conditions => 'name = "T.jan.nc"')
45
+ assert_kind_of Directory, ncep_jan.entity
46
+ end
47
+
48
+
49
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class DrawParameterTest < Test::Unit::TestCase
4
+ fixtures :draw_parameters
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class FunctionArgumentTest < Test::Unit::TestCase
4
+ fixtures :function_arguments
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class FunctionOutputTest < Test::Unit::TestCase
4
+ fixtures :function_outputs
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,10 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class FunctionTest < Test::Unit::TestCase
4
+ fixtures :functions, :function_arguments, :function_outputs, :nodes, :value_types
5
+
6
+ # Replace this with your real tests.
7
+ def test_truth
8
+ assert true
9
+ end
10
+ end
@@ -0,0 +1,48 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class GroupTest < Test::Unit::TestCase
4
+ fixtures :users, :groups
5
+
6
+ def setup
7
+ @user_root = User.find_by_login("root")
8
+ end
9
+
10
+ def test_create_groups
11
+ maxgid = Group.find_by_sql('select max(id) as id from groups').first.id
12
+ tg = Group.new(:name => 'test')
13
+ tg.owner = @user_root
14
+ assert tg.save
15
+ assert_equal @user_root.id, tg.owner_id
16
+ tg2 = Group.new(:name => 'test2')
17
+ tg2.owner = @user_root
18
+ assert tg2.save
19
+ assert_equal Group.find_by_name('test').id, maxgid+1
20
+ end
21
+
22
+ def test_members
23
+ assert_equal ["root"], Group.find_by_name("root").members.collect{|gm| gm.login}
24
+ assert_equal ["bob","longbob","root"], Group.find_by_name("all").members.collect{|gm| gm.login}.sort
25
+ assert_equal ["bob"], Group.find_by_name("era").members.collect{|gm| gm.login}
26
+ bobsgroup = Group.find_by_bit_flag(User.find_by_login("bob").groups).collect{|g| g.name}.sort
27
+ assert_equal bobsgroup, ["all", "bob", "bobs", "era"]
28
+ end
29
+
30
+ def test_add_del_members
31
+ bobs = Group.find_by_name("bobs")
32
+ mbs = ["bob","longbob"]
33
+ bobs.add_members( mbs )
34
+ assert_equal mbs, bobs.members.collect{|u| u.login}.sort
35
+ bobs.del_members(["longbob"])
36
+ assert_equal bobs.members.collect{|u| u.login}, ["bob"]
37
+ end
38
+
39
+ def test_destroy
40
+ longbob = Group.find_by_name("longbob")
41
+ longbob.add_members( ["longbob"] )
42
+ lg1 = User.find_by_login("longbob").groups
43
+ longbob.destroy
44
+ lg2 = User.find_by_login("longbob").groups
45
+ assert_equal lg1 ^ lg2, longbob.bit_mask
46
+ end
47
+
48
+ end
@@ -0,0 +1,13 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class ImageTest < Test::Unit::TestCase
4
+ fixtures :nodes, :images
5
+
6
+ def setup
7
+ end
8
+
9
+ def test_assert
10
+ assert true
11
+ end
12
+
13
+ end
@@ -0,0 +1,33 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class KeywordAttributeTest < Test::Unit::TestCase
4
+ fixtures :keyword_attributes, :nodes, :directories, :variables
5
+
6
+ def setup
7
+ @ka = KeywordAttribute.find(1)
8
+ end
9
+
10
+ def test_db
11
+ rd = keyword_attributes(:reanalysis_description)
12
+ assert_kind_of KeywordAttribute, @ka
13
+ assert_equal rd.node_id, @ka.node_id
14
+ assert_equal rd.name, @ka.name
15
+ assert_equal rd.value, @ka.value
16
+ assert_equal rd.num_value, @ka.num_value
17
+ assert_kind_of Node, rd.node
18
+ end
19
+
20
+ def test_stdname
21
+ ka = KeywordAttribute.find_by_stdname('title')
22
+ assert_equal 'long_name', ka.name
23
+ end
24
+
25
+ def test_node
26
+ node = Node.find_by_path("/samples/reanalysis")
27
+ ka = node.keyword_attributes
28
+ assert_equal 1, ka.length
29
+ assert_kind_of KeywordAttribute, ka[0]
30
+ assert_kind_of KeywordAttribute, node.entity.keyword_attributes[0]
31
+ end
32
+
33
+ end
@@ -0,0 +1,13 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class KnowledgeTest < Test::Unit::TestCase
4
+ fixtures :nodes, :knowledges
5
+
6
+ def setup
7
+ end
8
+
9
+ def test_assert
10
+ assert true
11
+ end
12
+
13
+ end
@@ -0,0 +1,20 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class NodeRelationTest < Test::Unit::TestCase
4
+ fixtures :nodes, :variables, :images, :node_relations
5
+
6
+ # Replace this with your real tests.
7
+
8
+ def setup
9
+ @t = Node.find_by_path("/samples/reanalysis/ncep/T.jan.nc/T")
10
+ @t_mean = Node.find_by_path("/samples/reanalysis/ncep/T.jan.zonal_mean.nc/T_mean")
11
+ @t_image = Node.find_by_path("/samples/reanalysis/ncep/T.jan.100hPa.png")
12
+ end
13
+
14
+ def test_relation
15
+ assert_equal [@t], @t_mean.references
16
+ assert_equal [@t], @t_image.references
17
+ assert_equal [@t_mean, @t_image].sort{|a,b| a.path<=>b.path}, @t.referenced_by.sort{|a,b| a.path<=>b.path}
18
+ end
19
+
20
+ end
@@ -0,0 +1,85 @@
1
+ require File.dirname(__FILE__) + '/../test_helper'
2
+
3
+ class NodeTest < Test::Unit::TestCase
4
+ fixtures :nodes, :users, :groups
5
+ #, :variables, :keyword_attributes,
6
+
7
+ def setup
8
+ @node_reanalysis = Node.find_by_path('/samples/reanalysis')
9
+ @root = User.find_by_login("root")
10
+ end
11
+
12
+ def test_permission
13
+ topnode = Node.find_by_path('/')
14
+ topnode.update
15
+ topnode.save!
16
+ #Node.find(:all, :user=>:all).each do |node|
17
+ # printf("%016x %s\n",node.groups_readable,node.path)
18
+ #end
19
+ n1 = Node.find_by_path('/samples/reanalysis/era40')
20
+ assert_equal n1.groups_readable, 32
21
+ n2 = Node.find_by_path('/samples/reanalysis/era40/t.nc')
22
+ assert_equal n2.groups_readable, 32
23
+ end
24
+
25
+ def test_db
26
+ reanalysis = nodes(:reanalysis)
27
+ assert_kind_of Node, @node_reanalysis
28
+ assert_equal reanalysis.id, @node_reanalysis.id
29
+ assert_equal reanalysis.name, @node_reanalysis.name
30
+ assert_equal reanalysis.parent_id, @node_reanalysis.parent_id
31
+ assert_equal reanalysis.node_type, @node_reanalysis.node_type
32
+ end
33
+
34
+ def test_tree
35
+ assert_equal '/samples', @node_reanalysis.parent.path
36
+ assert_equal ["ncep"], @node_reanalysis.children.collect{|node| node.name}
37
+ assert_equal ["era40","ncep"], @node_reanalysis.children(false,:user=>@root).collect{|node| node.name}
38
+ end
39
+
40
+ def test_lineage
41
+ # this is rather to test the consistency of the fixture
42
+ upath = '/samples/reanalysis/ncep/UV.jan.nc/U'
43
+ assert_kind_of Node, ( u = Node.find_by_path(upath) )
44
+ path = u.file
45
+ assert_equal( (pr=u.parent).path, path )
46
+ while (path.sub!(/\/[^\/]*$/,'') != '')
47
+ assert_equal( (pr=pr.parent).path, path )
48
+ end
49
+ end
50
+
51
+ def test_group
52
+ assert_equal Node.count, Node.find(:all, :user=>@root).length
53
+
54
+ bob = User.find_by_login("bob") # belongs to "era"
55
+ path = "/samples/reanalysis/era40"
56
+ assert_equal path, Node.find(:first, :conditions=>"path='#{path}'", :user=>bob).path
57
+ path = "/samples/reanalysis/era40/t.nc"
58
+ assert_equal path, Node.find(:first, :conditions=>"path='#{path}'", :user=>bob).path
59
+ path = "/samples/reanalysis/era40/t.nc/t"
60
+ assert_equal path, Node.find(:first, :conditions=>"path='#{path}'", :user=>bob).path
61
+ assert_equal 3, Node.find(:all, :conditions=>"path like '%era%'", :user=>bob).length
62
+
63
+ longbob = User.find_by_login("longbob") # "belongs to "bobs"
64
+ path = "/usr/bob/hidden_image.png"
65
+ assert_equal path, Node.find(:first, :conditions=>"path='#{path}'", :user=>@root).path
66
+ assert_equal path, Node.find(:first, :conditions=>"path='#{path}'", :user=>longbob).path
67
+ assert_equal 0, Node.find(:all, :conditions=>"path like '%era%'", :user=>longbob).length
68
+
69
+ path = "/samples/reanalysis/ncep/T.jan.nc/T"
70
+ assert_equal path, Node.find(:first, :conditions=>["path=?",path]).path
71
+ assert_equal @node_reanalysis, Node.find(@node_reanalysis.id)
72
+ assert_equal 0, Node.find(:all, :conditions=>"path like '%era%'").length
73
+ path = "/usr/bob/hidden_image.png"
74
+ assert_nil Node.find(:first, :conditions=>["path=?",path])
75
+ end
76
+
77
+ def test_update
78
+ name = "changed_name"
79
+ @node_reanalysis.name = name
80
+ assert @node_reanalysis.save, @node_reanalysis.errors.full_messages.join("; ")
81
+ @node_reanalysis.reload
82
+ assert_equal name, @node_reanalysis.name
83
+ end
84
+
85
+ end