gfdnavi 1.3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (446) hide show
  1. data/ChangeLog +10949 -0
  2. data/LICENCE.txt +57 -0
  3. data/Makefile +18 -0
  4. data/TODO +132 -0
  5. data/app/controllers/analysis_controller.rb +700 -0
  6. data/app/controllers/application.rb +41 -0
  7. data/app/controllers/draw_method_controller.rb +172 -0
  8. data/app/controllers/explorer_controller.rb +197 -0
  9. data/app/controllers/finder_controller.rb +331 -0
  10. data/app/controllers/function_controller.rb +204 -0
  11. data/app/controllers/group_controller.rb +115 -0
  12. data/app/controllers/keyword_attributes_controller.rb +52 -0
  13. data/app/controllers/knowledge_controller.rb +928 -0
  14. data/app/controllers/nodes_controller.rb +515 -0
  15. data/app/controllers/search_controller.rb +341 -0
  16. data/app/controllers/user_controller.rb +337 -0
  17. data/app/helpers/analysis_helper.rb +2 -0
  18. data/app/helpers/application_helper.rb +105 -0
  19. data/app/helpers/description_helper.rb +2 -0
  20. data/app/helpers/function_helper.rb +2 -0
  21. data/app/helpers/group_helper.rb +2 -0
  22. data/app/helpers/search_helper.rb +3 -0
  23. data/app/helpers/user_helper.rb +2 -0
  24. data/app/helpers/work_flow_helper.rb +92 -0
  25. data/app/models/actual_file.rb +3 -0
  26. data/app/models/analysis.rb +715 -0
  27. data/app/models/analysis_history.rb +42 -0
  28. data/app/models/cross_array.rb +22 -0
  29. data/app/models/cross_result.rb +254 -0
  30. data/app/models/derived_spatial_attribute.rb +3 -0
  31. data/app/models/diagram_cache.rb +16 -0
  32. data/app/models/diagram_cache_datum.rb +4 -0
  33. data/app/models/diagram_cache_session.rb +8 -0
  34. data/app/models/directory.rb +21 -0
  35. data/app/models/draw_method.rb +48 -0
  36. data/app/models/draw_method_attribute.rb +8 -0
  37. data/app/models/draw_parameter.rb +12 -0
  38. data/app/models/explorer_query.rb +354 -0
  39. data/app/models/explorer_result.rb +312 -0
  40. data/app/models/function.rb +75 -0
  41. data/app/models/function_argument.rb +6 -0
  42. data/app/models/function_output.rb +4 -0
  43. data/app/models/group.rb +153 -0
  44. data/app/models/image.rb +20 -0
  45. data/app/models/keyword_attribute.rb +179 -0
  46. data/app/models/knowledge.rb +94 -0
  47. data/app/models/knowledge_backup.rb +32 -0
  48. data/app/models/knowledge_figure.rb +16 -0
  49. data/app/models/knowledge_figure_backup.rb +16 -0
  50. data/app/models/knowledge_parser.rb +392 -0
  51. data/app/models/node.rb +605 -0
  52. data/app/models/node_entity_abstract.rb +112 -0
  53. data/app/models/node_lineage.rb +6 -0
  54. data/app/models/node_relation.rb +4 -0
  55. data/app/models/path_node.rb +60 -0
  56. data/app/models/query.rb +193 -0
  57. data/app/models/query_history.rb +12 -0
  58. data/app/models/results.rb +48 -0
  59. data/app/models/sign_up_user.rb +25 -0
  60. data/app/models/spatial_and_time_attribute.rb +11 -0
  61. data/app/models/user.rb +115 -0
  62. data/app/models/user_mailer.rb +48 -0
  63. data/app/models/value_type.rb +3 -0
  64. data/app/models/variable.rb +70 -0
  65. data/app/models/virtual_node.rb +457 -0
  66. data/app/views/analysis/__help_analysis_tab.en.html +57 -0
  67. data/app/views/analysis/__help_draw_share.en.html +12 -0
  68. data/app/views/analysis/__help_draw_tab.en.html +6 -0
  69. data/app/views/analysis/_analysis_function_settings.rhtml +61 -0
  70. data/app/views/analysis/_analysis_settings.rhtml +28 -0
  71. data/app/views/analysis/_diagram.rhtml +70 -0
  72. data/app/views/analysis/_dimension_option.rhtml +59 -0
  73. data/app/views/analysis/_draw_general_settings.rhtml +217 -0
  74. data/app/views/analysis/_draw_settings.rhtml +73 -0
  75. data/app/views/analysis/_history.rhtml +19 -0
  76. data/app/views/analysis/_popular_diagrams.rhtml +42 -0
  77. data/app/views/analysis/_save_form.rhtml +44 -0
  78. data/app/views/analysis/_variables.rhtml +66 -0
  79. data/app/views/analysis/_variables_order.rhtml +56 -0
  80. data/app/views/analysis/index.rhtml +195 -0
  81. data/app/views/analysis/preview.rhtml +3 -0
  82. data/app/views/analysis/save.rhtml +73 -0
  83. data/app/views/analysis/show_diagram.rhtml +42 -0
  84. data/app/views/cross/_display_map.rhtml +201 -0
  85. data/app/views/cross/_result.rhtml +205 -0
  86. data/app/views/cross/_show_result_tree.rhtml +40 -0
  87. data/app/views/cross/_show_results.rhtml +80 -0
  88. data/app/views/cross/_style.rhtml +21 -0
  89. data/app/views/cross/index.rhtml +271 -0
  90. data/app/views/draw_method/_edit_form.rhtml +110 -0
  91. data/app/views/draw_method/create.rhtml +8 -0
  92. data/app/views/draw_method/details.rhtml +113 -0
  93. data/app/views/draw_method/edit.rhtml +8 -0
  94. data/app/views/draw_method/list.rhtml +80 -0
  95. data/app/views/explorer/_display_map.rhtml +199 -0
  96. data/app/views/explorer/_show_result_tree.rhtml +40 -0
  97. data/app/views/explorer/_show_results.rhtml +101 -0
  98. data/app/views/explorer/_style.rhtml +21 -0
  99. data/app/views/explorer/index.rhtml +214 -0
  100. data/app/views/finder/_children.html.erb +84 -0
  101. data/app/views/finder/_children_details.html.erb +74 -0
  102. data/app/views/finder/_children_details_tr.html.erb +196 -0
  103. data/app/views/finder/create_tree.html.erb +15 -0
  104. data/app/views/finder/flex.html.erb +52 -0
  105. data/app/views/finder/index.html.erb +47 -0
  106. data/app/views/finder/show_details.html.erb +3 -0
  107. data/app/views/finder/show_images.html.erb +3 -0
  108. data/app/views/function/_edit_form.rhtml +106 -0
  109. data/app/views/function/create.rhtml +8 -0
  110. data/app/views/function/details.rhtml +96 -0
  111. data/app/views/function/edit.rhtml +8 -0
  112. data/app/views/function/list.rhtml +80 -0
  113. data/app/views/group/add_member.rhtml +13 -0
  114. data/app/views/group/change_owner.rhtml +15 -0
  115. data/app/views/group/create.rhtml +11 -0
  116. data/app/views/group/delete_member.rhtml +14 -0
  117. data/app/views/group/list.rhtml +63 -0
  118. data/app/views/knowledge/_backup.rhtml +135 -0
  119. data/app/views/knowledge/_category.rhtml +58 -0
  120. data/app/views/knowledge/_category_list.rhtml +34 -0
  121. data/app/views/knowledge/_category_table.rhtml +23 -0
  122. data/app/views/knowledge/_comment.rhtml +64 -0
  123. data/app/views/knowledge/_comment_input_form.rhtml +19 -0
  124. data/app/views/knowledge/_comments.rhtml +84 -0
  125. data/app/views/knowledge/_form.rhtml +139 -0
  126. data/app/views/knowledge/_group_figure_form.rhtml +187 -0
  127. data/app/views/knowledge/_layout_figure.rhtml +61 -0
  128. data/app/views/knowledge/_layout_figures_in_a_row_above_text.rhtml +42 -0
  129. data/app/views/knowledge/_layout_figures_under_text.rhtml +45 -0
  130. data/app/views/knowledge/_layout_one_figure_above_text.rhtml +28 -0
  131. data/app/views/knowledge/_summary.rhtml +21 -0
  132. data/app/views/knowledge/edit.rhtml +37 -0
  133. data/app/views/knowledge/list.rhtml +287 -0
  134. data/app/views/knowledge/new.rhtml +23 -0
  135. data/app/views/knowledge/new_from_analysis.rhtml +21 -0
  136. data/app/views/knowledge/show.rhtml +196 -0
  137. data/app/views/layouts/gfdnavi.rhtml +105 -0
  138. data/app/views/nodes/_ancestors.html.erb +89 -0
  139. data/app/views/nodes/_description_methods_table.html.erb +75 -0
  140. data/app/views/nodes/_mode.html.erb +16 -0
  141. data/app/views/nodes/description.html.erb +181 -0
  142. data/app/views/nodes/description_methods.html.erb +1 -0
  143. data/app/views/nodes/edit.html.erb +73 -0
  144. data/app/views/nodes/index.html.erb +25 -0
  145. data/app/views/nodes/show.html.erb +20 -0
  146. data/app/views/search/_children_details_mapsearch.rhtml +68 -0
  147. data/app/views/search/_children_details_tr.rhtml +205 -0
  148. data/app/views/search/_show_grouplist.rhtml +74 -0
  149. data/app/views/search/_show_results.rhtml +43 -0
  150. data/app/views/search/_show_results_global.rhtml +36 -0
  151. data/app/views/search/_show_results_partial.rhtml +39 -0
  152. data/app/views/search/_show_results_partial_groupbyfile.rhtml +50 -0
  153. data/app/views/search/_show_variablelist.rhtml +28 -0
  154. data/app/views/search/mapsearch.rhtml +176 -0
  155. data/app/views/search/remapsearch.rjs +18 -0
  156. data/app/views/search/show_details.rhtml +3 -0
  157. data/app/views/user/add_user.rhtml +30 -0
  158. data/app/views/user/change_password.rhtml +25 -0
  159. data/app/views/user/edit.html.erb +50 -0
  160. data/app/views/user/index.rhtml +162 -0
  161. data/app/views/user/login.rhtml +41 -0
  162. data/app/views/user/logout.rhtml +4 -0
  163. data/app/views/user/signup.rhtml +36 -0
  164. data/app/views/user/signup_succeeded.rhtml +36 -0
  165. data/app/views/user_mailer/authorization_inform.rhtml +15 -0
  166. data/app/views/user_mailer/signup_accepted.rhtml +12 -0
  167. data/app/views/user_mailer/signup_confirm.rhtml +14 -0
  168. data/app/views/user_mailer/signup_inform.rhtml +13 -0
  169. data/app/views/user_mailer/signup_rejected.rhtml +11 -0
  170. data/app/views/work_flow/_push_wsdls.rhtml +55 -0
  171. data/app/views/work_flow/index.rhtml +46 -0
  172. data/config/database.yml.example +35 -0
  173. data/config/environment.rb +68 -0
  174. data/config/gfdnavi.yml.example +95 -0
  175. data/config/load_config.rb +151 -0
  176. data/config/routes.rb +35 -0
  177. data/consistency_checker.rb +129 -0
  178. data/data/gfdnavi_docs/how_to_draw_multiple_images.knlge +68 -0
  179. data/data/gfdnavi_docs/how_to_knowledge.knlge +138 -0
  180. data/data/gfdnavi_docs/how_to_write_document_about_Gfdnavi.knlge +30 -0
  181. data/data/samples/jmadata.SIGEN +8 -0
  182. data/data/samples/jmadata.yml +6 -0
  183. data/data/samples/jmadata/MSM-P/2006.nc.yml +2 -0
  184. data/data/samples/jmadata/MSM-P/2006.yml +17 -0
  185. data/data/samples/jmadata/MSM-P/2006/0101.nc +0 -0
  186. data/data/samples/jmadata/MSM-P/2006/0101.nc.yml +13 -0
  187. data/data/samples/jmadata/MSM-P/2006/0102.nc +0 -0
  188. data/data/samples/jmadata/MSM-P/2006/0103.nc +0 -0
  189. data/data/samples/jmadata/MSM-P/2006/0104.nc +0 -0
  190. data/data/samples/jmadata/MSM-P/2006/0105.nc +0 -0
  191. data/data/samples/jmadata/MSM-P/2006/010[1-3].nc.yml +2 -0
  192. data/data/samples/jmadata/MSM-P/2006/skip_data.rb +96 -0
  193. data/data/samples/jmadata/MSM-P/2006/skip_data.sh +6 -0
  194. data/data/samples/reanalysis.SIGEN +8 -0
  195. data/data/samples/reanalysis/era40.SIGEN +8 -0
  196. data/data/samples/reanalysis/era40.yml +2 -0
  197. data/data/samples/reanalysis/era40/t.jan.nc +0 -0
  198. data/data/samples/reanalysis/era40/t.jan.nc.yml +1 -0
  199. data/data/samples/reanalysis/ncep.SIGEN +9 -0
  200. data/data/samples/reanalysis/ncep/T.jan.100hPa.png +0 -0
  201. data/data/samples/reanalysis/ncep/T.jan.100hPa.png.yml +43 -0
  202. data/data/samples/reanalysis/ncep/T.jan.nc +0 -0
  203. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc +0 -0
  204. data/data/samples/reanalysis/ncep/T.jan.zonal_mean.nc.yml +8 -0
  205. data/data/samples/reanalysis/ncep/T.jan_only_root.nc +0 -0
  206. data/data/samples/reanalysis/ncep/T.jan_only_root.nc.yml +4 -0
  207. data/data/samples/reanalysis/ncep/UV.jan.nc +0 -0
  208. data/data/samples/reanalysis/ncep/UV.jan.nc.yml +10 -0
  209. data/data/samples/reanalysis/ncep/UV.jan.nc.yml.ja +11 -0
  210. data/data/samples/sonde_operational.yml +5 -0
  211. data/data/samples/sonde_operational/std_plev.yml +12 -0
  212. data/data/samples/sonde_operational/std_plev/41256.spl.nc +0 -0
  213. data/data/samples/sonde_operational/std_plev/42410.spl.nc +0 -0
  214. data/data/samples/sonde_operational/std_plev/43333.spl.nc +0 -0
  215. data/data/samples/sonde_operational/std_plev/43346.spl.nc +0 -0
  216. data/data/samples/sonde_operational/std_plev/48698.spl.nc +0 -0
  217. data/data/samples/sonde_operational/std_plev/61641.spl.nc +0 -0
  218. data/data/samples/sonde_operational/std_plev/63741.spl.nc +0 -0
  219. data/data/samples/sonde_operational/std_plev/67083.spl.nc +0 -0
  220. data/data/samples/sonde_operational/std_plev/72261.spl.nc +0 -0
  221. data/data/samples/sonde_operational/std_plev/76805.spl.nc +0 -0
  222. data/data/samples/sonde_operational/std_plev/82193.spl.nc +0 -0
  223. data/data/samples/sonde_operational/std_plev/91165.spl.nc +0 -0
  224. data/data/samples/sonde_operational/std_plev/91610.spl.nc +0 -0
  225. data/data/samples/sonde_operational/std_plev/91948.spl.nc +0 -0
  226. data/data/samples/sonde_operational/std_plev/94294.spl.nc +0 -0
  227. data/db/NetCDFparser.rb +406 -0
  228. data/db/create_derived_spatial_attributes.sql +12 -0
  229. data/db/draw_methods/line.yml +6 -0
  230. data/db/draw_methods/scatter.yml +38 -0
  231. data/db/draw_methods/tone.yml +64 -0
  232. data/db/draw_methods/vector.yml +19 -0
  233. data/db/dump_db.rb +43 -0
  234. data/db/functions/additions.yml +10 -0
  235. data/db/functions/cut.yml +10 -0
  236. data/db/functions/division.yml +10 -0
  237. data/db/functions/mean.yml +28 -0
  238. data/db/functions/multiplication.yml +10 -0
  239. data/db/functions/stddev.yml +28 -0
  240. data/db/functions/subtraction.yml +10 -0
  241. data/db/migrate/001_initial_scheme.rb +289 -0
  242. data/db/migrate/002_add_open_id_authentication_tables.rb +20 -0
  243. data/db/register_directory_tree.rb +760 -0
  244. data/db/restore_db.rb +60 -0
  245. data/gfdnavi-install +828 -0
  246. data/install.rb +828 -0
  247. data/lib/activerecord_gfdnavi.rb +31 -0
  248. data/lib/basic_authorization.rb +50 -0
  249. data/lib/create_activeresources.rb +108 -0
  250. data/lib/execute_analysis.rb +472 -0
  251. data/lib/file_gfdnavi.rb +38 -0
  252. data/lib/gphys_gfdnavi.rb +81 -0
  253. data/lib/localdir.rb +110 -0
  254. data/lib/login_system.rb +110 -0
  255. data/lib/multibytes.rb +20 -0
  256. data/lib/narray_yaml.rb +58 -0
  257. data/lib/no_rdb_base.rb +40 -0
  258. data/lib/opendapdir.rb +171 -0
  259. data/lib/tar.rb +127 -0
  260. data/lib/tasks/clean.rake +65 -0
  261. data/lib/tasks/setup.rake +316 -0
  262. data/lib/tasks/update.rake +62 -0
  263. data/lib/vizshot_gfdnavi.rb +224 -0
  264. data/public/crossdomain.xml +4 -0
  265. data/public/flex/NodeTreeDescriptor.as +55 -0
  266. data/public/flex/TreeNode.as +253 -0
  267. data/public/flex/finder.mxml +304 -0
  268. data/public/flex/finder.swf +0 -0
  269. data/public/flex/gfdnavi.mxml +52 -0
  270. data/public/flex/gfdnavi.swf +0 -0
  271. data/public/images/Help_S-shots/dir_tree_with_add.jpg +0 -0
  272. data/public/images/analyze.gif +0 -0
  273. data/public/images/circle.gif +0 -0
  274. data/public/images/create_from_analysis_button.png +0 -0
  275. data/public/images/delete.png +0 -0
  276. data/public/images/down.png +0 -0
  277. data/public/images/drawbutton.gif +0 -0
  278. data/public/images/gfdnavi_home_logo.png +0 -0
  279. data/public/images/gfdnavi_logo_big.png +0 -0
  280. data/public/images/gfdnavi_logo_med.png +0 -0
  281. data/public/images/gfdnavi_logo_mini.png +0 -0
  282. data/public/images/gfdnavi_logo_nobg_big.png +0 -0
  283. data/public/images/gfdnavi_logo_nobg_med.png +0 -0
  284. data/public/images/gfdnavi_logo_nobg_small.png +0 -0
  285. data/public/images/gfdnavi_logo_small.png +0 -0
  286. data/public/images/gfdnavi_logo_xsmall.png +0 -0
  287. data/public/images/hbar.png +0 -0
  288. data/public/images/helpmark16.png +0 -0
  289. data/public/images/helpmark18.png +0 -0
  290. data/public/images/kikyu_g.gif +0 -0
  291. data/public/images/kikyu_r.gif +0 -0
  292. data/public/images/map_icon_g.gif +0 -0
  293. data/public/images/map_icon_r.gif +0 -0
  294. data/public/images/new_knowledge.png +0 -0
  295. data/public/images/openid.png +0 -0
  296. data/public/images/read_in_the_form.png +0 -0
  297. data/public/images/slider_f.gif +0 -0
  298. data/public/images/slider_f_red.gif +0 -0
  299. data/public/images/star1.gif +0 -0
  300. data/public/images/star2.gif +0 -0
  301. data/public/images/startanim.gif +0 -0
  302. data/public/images/stopanim.gif +0 -0
  303. data/public/images/tree/DL.png +0 -0
  304. data/public/images/tree/anal_viz.png +0 -0
  305. data/public/images/tree/analyze_visualize_checked_items.png +0 -0
  306. data/public/images/tree/binary.png +0 -0
  307. data/public/images/tree/details.png +0 -0
  308. data/public/images/tree/download_checked_items.png +0 -0
  309. data/public/images/tree/folder.png +0 -0
  310. data/public/images/tree/folder_close.gif +0 -0
  311. data/public/images/tree/image2.png +0 -0
  312. data/public/images/tree/knowledge.png +0 -0
  313. data/public/images/tree/knowledges.png +0 -0
  314. data/public/images/tree/last.gif +0 -0
  315. data/public/images/tree/last.png +0 -0
  316. data/public/images/tree/minus.gif +0 -0
  317. data/public/images/tree/minus_simple.gif +0 -0
  318. data/public/images/tree/none.gif +0 -0
  319. data/public/images/tree/none.png +0 -0
  320. data/public/images/tree/plus.gif +0 -0
  321. data/public/images/tree/plus_simple.gif +0 -0
  322. data/public/images/tree/show.png +0 -0
  323. data/public/images/tree/show_checked_items.png +0 -0
  324. data/public/images/tree/t.gif +0 -0
  325. data/public/images/tree/t.png +0 -0
  326. data/public/images/tree/tate.gif +0 -0
  327. data/public/images/tree/tate.png +0 -0
  328. data/public/images/up.png +0 -0
  329. data/public/images/vbar.png +0 -0
  330. data/public/images/white.bmp +0 -0
  331. data/public/images/x.gif +0 -0
  332. data/public/index.html +100 -0
  333. data/public/javascripts/AC_OETags.js +269 -0
  334. data/public/javascripts/analysis.js +751 -0
  335. data/public/javascripts/application.js +29 -0
  336. data/public/javascripts/directory_tree.js +102 -0
  337. data/public/javascripts/draw_method.js +83 -0
  338. data/public/javascripts/excanvas.js +704 -0
  339. data/public/javascripts/function.js +107 -0
  340. data/public/javascripts/gfdnavi.js +175 -0
  341. data/public/javascripts/knowledge.js +384 -0
  342. data/public/javascripts/mapsearch.js +313 -0
  343. data/public/javascripts/progress.js +42 -0
  344. data/public/javascripts/resizable_box.js +164 -0
  345. data/public/javascripts/slider.js +260 -0
  346. data/public/javascripts/tab.js +17 -0
  347. data/public/javascripts/work_flow.js +452 -0
  348. data/public/stylesheets/analysis.css +111 -0
  349. data/public/stylesheets/description.css +71 -0
  350. data/public/stylesheets/gfdnavi.css +141 -0
  351. data/public/stylesheets/knowledge.css +218 -0
  352. data/public/stylesheets/search.css +184 -0
  353. data/public/stylesheets/tree.css +45 -0
  354. data/public/stylesheets/tree_for_ie.css +3 -0
  355. data/public/stylesheets/work_flow.css +78 -0
  356. data/script/cleaner +11 -0
  357. data/script/server_ssl +131 -0
  358. data/test/fixtures/diagram_cache_data.yml +5 -0
  359. data/test/fixtures/diagram_cache_sessions.yml +6 -0
  360. data/test/fixtures/diagram_caches.yml +6 -0
  361. data/test/fixtures/directories.yml +57 -0
  362. data/test/fixtures/draw_parameters.yml +6 -0
  363. data/test/fixtures/function_arguments.yml +15 -0
  364. data/test/fixtures/function_outputs.yml +15 -0
  365. data/test/fixtures/functions.yml +29 -0
  366. data/test/fixtures/group_members.yml +33 -0
  367. data/test/fixtures/groups.yml +25 -0
  368. data/test/fixtures/images.yml +12 -0
  369. data/test/fixtures/keyword_attributes.yml +73 -0
  370. data/test/fixtures/knowledges.yml +10 -0
  371. data/test/fixtures/node_relations.yml +11 -0
  372. data/test/fixtures/nodes.yml +298 -0
  373. data/test/fixtures/sign_up_users.yml +8 -0
  374. data/test/fixtures/spatial_and_time_attributes.yml +29 -0
  375. data/test/fixtures/user_mailer/authorization_inform +11 -0
  376. data/test/fixtures/user_mailer/signup_accepted +10 -0
  377. data/test/fixtures/user_mailer/signup_confirm +17 -0
  378. data/test/fixtures/user_mailer/signup_inform +10 -0
  379. data/test/fixtures/user_mailer/signup_rejected +9 -0
  380. data/test/fixtures/users.yml +31 -0
  381. data/test/fixtures/value_types.yml +10 -0
  382. data/test/fixtures/variables.yml +17 -0
  383. data/test/functional/analysis_controller_test.rb +169 -0
  384. data/test/functional/description_controller_test.rb +18 -0
  385. data/test/functional/function_controller_test.rb +18 -0
  386. data/test/functional/group_controller_test.rb +18 -0
  387. data/test/functional/search_controller_test.rb +83 -0
  388. data/test/functional/user_controller_test.rb +77 -0
  389. data/test/functional/webservice_analysis_api_test.rb +12 -0
  390. data/test/functional/work_flow_controller_test.rb +18 -0
  391. data/test/test_helper.rb +28 -0
  392. data/test/unit/diagram_cache_datum_test.rb +10 -0
  393. data/test/unit/diagram_cache_session_test.rb +10 -0
  394. data/test/unit/diagram_cache_test.rb +10 -0
  395. data/test/unit/directory_test.rb +49 -0
  396. data/test/unit/draw_parameter_test.rb +10 -0
  397. data/test/unit/function_argument_test.rb +10 -0
  398. data/test/unit/function_output_test.rb +10 -0
  399. data/test/unit/function_test.rb +10 -0
  400. data/test/unit/group_test.rb +48 -0
  401. data/test/unit/image_test.rb +13 -0
  402. data/test/unit/keyword_attribute_test.rb +33 -0
  403. data/test/unit/knowledge_test.rb +13 -0
  404. data/test/unit/node_relation_test.rb +20 -0
  405. data/test/unit/node_test.rb +85 -0
  406. data/test/unit/sign_up_user_test.rb +20 -0
  407. data/test/unit/spatial_and_time_attribute_test.rb +29 -0
  408. data/test/unit/user_mailer_test.rb +101 -0
  409. data/test/unit/user_test.rb +134 -0
  410. data/test/unit/value_type_test.rb +10 -0
  411. data/test/unit/variable_test.rb +35 -0
  412. data/vendor/plugins/acts_as_list/README +23 -0
  413. data/vendor/plugins/acts_as_list/init.rb +3 -0
  414. data/vendor/plugins/acts_as_list/lib/active_record/acts/list.rb +256 -0
  415. data/vendor/plugins/acts_as_list/test/list_test.rb +332 -0
  416. data/vendor/plugins/acts_as_tree/README +26 -0
  417. data/vendor/plugins/acts_as_tree/Rakefile +22 -0
  418. data/vendor/plugins/acts_as_tree/init.rb +1 -0
  419. data/vendor/plugins/acts_as_tree/lib/active_record/acts/tree.rb +96 -0
  420. data/vendor/plugins/acts_as_tree/test/abstract_unit.rb +0 -0
  421. data/vendor/plugins/acts_as_tree/test/acts_as_tree_test.rb +219 -0
  422. data/vendor/plugins/acts_as_tree/test/database.yml +0 -0
  423. data/vendor/plugins/acts_as_tree/test/fixtures/mixin.rb +0 -0
  424. data/vendor/plugins/acts_as_tree/test/fixtures/mixins.yml +0 -0
  425. data/vendor/plugins/acts_as_tree/test/schema.rb +0 -0
  426. data/vendor/plugins/will_paginate/CHANGELOG +92 -0
  427. data/vendor/plugins/will_paginate/LICENSE +18 -0
  428. data/vendor/plugins/will_paginate/README.rdoc +131 -0
  429. data/vendor/plugins/will_paginate/Rakefile +62 -0
  430. data/vendor/plugins/will_paginate/examples/apple-circle.gif +0 -0
  431. data/vendor/plugins/will_paginate/examples/index.haml +69 -0
  432. data/vendor/plugins/will_paginate/examples/index.html +92 -0
  433. data/vendor/plugins/will_paginate/examples/pagination.css +90 -0
  434. data/vendor/plugins/will_paginate/examples/pagination.sass +91 -0
  435. data/vendor/plugins/will_paginate/init.rb +1 -0
  436. data/vendor/plugins/will_paginate/lib/will_paginate.rb +86 -0
  437. data/vendor/plugins/will_paginate/lib/will_paginate/array.rb +16 -0
  438. data/vendor/plugins/will_paginate/lib/will_paginate/collection.rb +145 -0
  439. data/vendor/plugins/will_paginate/lib/will_paginate/core_ext.rb +32 -0
  440. data/vendor/plugins/will_paginate/lib/will_paginate/finder.rb +247 -0
  441. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope.rb +132 -0
  442. data/vendor/plugins/will_paginate/lib/will_paginate/named_scope_patch.rb +39 -0
  443. data/vendor/plugins/will_paginate/lib/will_paginate/version.rb +9 -0
  444. data/vendor/plugins/will_paginate/lib/will_paginate/view_helpers.rb +373 -0
  445. data/vendor/plugins/will_paginate/will_paginate.gemspec +21 -0
  446. metadata +586 -0
@@ -0,0 +1,23 @@
1
+ <body onload="setNumOfFigure(<%= @num_of_figure %>)">
2
+ <div class="form_of_creating_knowledge_document">
3
+ <u>
4
+ <h1>New Knowledge</h1>
5
+ </u>
6
+
7
+ <% form_tag({:action => "create_from_new", :type => "new"}, {"name" => "form"}) do %>
8
+ <%= error_messages_for 'knowledge' %>
9
+ <%= render :partial => 'form' %>
10
+ <%= submit_tag "Create" %>
11
+ <br>
12
+ <br>
13
+ <div id="backup">
14
+ <%= render :partial => "backup" %>
15
+ </div>
16
+ <% end %>
17
+ </div>
18
+
19
+ <%= link_to 'Back to List', :action => 'list' %>
20
+ </body>
21
+
22
+
23
+
@@ -0,0 +1,21 @@
1
+ <body onload="setNumOfFigure(<%= @num_of_figure %>)">
2
+ <div class="form_of_creating_knowledge_document">
3
+ <u>
4
+ <h1>Save Images and Create a New Knowledge</h1>
5
+ </u>
6
+
7
+ <% form_tag({:action => "create_from_analysis", :type => "new_from_analysis"}, {"name"=>"form"}) do %>
8
+ <%= error_messages_for 'knowledge' %>
9
+ <%= render :partial => 'form' %>
10
+ <%= submit_tag "Create" %>
11
+ <br>
12
+ <br>
13
+ <div id="backup">
14
+ <%= render :partial => "backup" %>
15
+ </div>
16
+ <% end %>
17
+ </div>
18
+
19
+ <%= link_to 'Go to Knowledge List', :action => 'list' %>
20
+ </body>
21
+
@@ -0,0 +1,196 @@
1
+ <%
2
+ # == ���݂�show�̃\�[�X�\��
3
+ # "show.rhtml"
4
+ # => "_comments.rhtml"
5
+ # => "_comment.rhtml" * n
6
+ # => "_comment_input_form.rhtml"
7
+ # => "_form.rhtml"
8
+ # => "_backup.rhtml"
9
+ %>
10
+
11
+
12
+
13
+ <% if @comments.length > 0 %>
14
+ <body onload="showCommentListShort();setNumOfFigure(<%= @num_of_figure %>);">
15
+ <% end %>
16
+
17
+ <%
18
+ # ���C�A�E�g�𑝂₵�����Ƃ��́Ahtml�t�@�C���������āA���O�������ɋL�q����
19
+ layouts = ["layout_figures_under_text","layout_one_figure_above_text","layout_figures_in_a_row_above_text"]
20
+ layout_messages = ["figures under text.", "one figure above text.", "figures in a row above text."]
21
+
22
+ # ���C�A�E�g���̑���̗D�揇��
23
+ # �{�^���Ő؂�ւ����Ƃ����f�t�H���g�l��������f�t�H���g���������1�–ڂ̂��
24
+ if params[:layout]
25
+ selected_layout = params[:layout]
26
+ elsif @knowledge.default_layout
27
+ selected_layout = layouts[@knowledge.default_layout]
28
+ else
29
+ selected_layout = layouts[0]
30
+ end
31
+ message = String.new
32
+ 0.upto(2){|i| message += "<option#{i==layouts.index(selected_layout) ? " selected" : ""} value=#{layouts[i]}>#{layout_messages[i]}</option>,"}
33
+
34
+ @displayed_knowledge = @knowledge
35
+ @type = "comment"
36
+ %>
37
+
38
+ <% unless (params[:from] && params[:from] == "show_comments") %>
39
+ <% form_tag ({:action => 'show', :path => @knowledge.path}, {"name"=>"form"}) do %>
40
+ <%= error_messages_for 'knowledge' %>
41
+ <table>
42
+ <tr><td align="right">
43
+ <label for="layout">Layout : </label>
44
+ <select id="layout" name="layout" onChange="putNumSelectMenu(this.selectedIndex)">
45
+ <%= message[0..-2] %><!--�Ō�� ", "���]�v�Ȃ̂Ŏ�菜�� -->
46
+ </select>
47
+ </td>
48
+ <td>
49
+ &nbsp;size of figure:&nbsp;
50
+ <%
51
+ if (params[:knowledge] && params[:knowledge]["height_or_width"] == "width") || (@knowledge && @knowledge.figures_size_status % 2 == 1)
52
+ selected_side = "width"
53
+ other_side = "height"
54
+ else
55
+ selected_side = "height"
56
+ other_side = "width"
57
+ end
58
+ %>
59
+ <%= select_tag "knowledge[height_or_width]", "<option>#{selected_side}</option><option>#{other_side}</option>" %>
60
+
61
+ <%
62
+ if params[:knowledge] && params[:knowledge]["figures_size_number"]
63
+ figures_size_number = params[:knowledge]["figures_size_number"]
64
+ elsif @knowledge && @knowledge.figures_size_number
65
+ figures_size_number = @knowledge.figures_size_number
66
+ else
67
+ figures_size_number = 100
68
+ end
69
+ %>
70
+ <%= text_field_tag "knowledge[figures_size_number]", figures_size_number, :size => 5 %>
71
+
72
+ <%
73
+ if params[:knowledge]
74
+ case params[:knowledge]["percent_or_pixel"]
75
+ when 'pixel'
76
+ pixel_selected = "selected"
77
+ percent_selected = ""
78
+ else
79
+ pixel_selected = ""
80
+ percent_selected = "selected"
81
+ end
82
+ elsif @knowledge && @knowledge.figures_size_status >= 2
83
+ pixel_selected = "selected"
84
+ percent_selected = ""
85
+ else
86
+ pixel_selected = ""
87
+ percent_selected = "selected"
88
+ end
89
+ %>
90
+ <%= select_tag "knowledge[percent_or_pixel]", "<option #{pixel_selected} value='pixel'>px</option><option #{percent_selected} value='percent'>%</option>" %>
91
+ </td></tr>
92
+ <tr><td align="right">
93
+ input the number of figures in a row
94
+ <%
95
+ if params[:knowledge] && params[:knowledge]["horizontal_figures"]
96
+ default_value = params[:knowledge]["horizontal_figures"]
97
+ elsif @knowledge.horizontal_figures
98
+ default_value = @knowledge.horizontal_figures
99
+ else
100
+ default_value = 1
101
+ end
102
+ num_fig_message = String.new
103
+
104
+ 1.upto(20) do |i|
105
+ num_fig_message << "<option #{i==default_value.to_i ? 'selected' : ""} value=#{i}>#{i}</option>,"
106
+ end
107
+ %>
108
+ <select id="knowledge_horizontal_figures" name="knowledge[horizontal_figures]"
109
+ <%= h("disabled") if selected_layout != layouts[0] %> >
110
+ <%= num_fig_message[0..-2] %>
111
+ </select>
112
+ </td>
113
+ <td align="right">
114
+ &nbsp;&nbsp;
115
+ <%= submit_tag "change layout" %>
116
+ </td></tr>
117
+ </table>
118
+ <% end %>
119
+ <% end %>
120
+
121
+
122
+ <!-- title, author, category -->
123
+ <p>
124
+ <h1 class='davis'>
125
+ <div style="width:97%;">
126
+ <%= @knowledge.title %>
127
+ </div>
128
+ </h1>
129
+ </p>
130
+ <p>
131
+ <div class='category'>
132
+ Category: <%= h @knowledge.category %>
133
+ </div>
134
+ <div class='author'>
135
+ <% unless @knowledge.creator == "" %>
136
+ Author: <%= @knowledge.creator %>
137
+ <% end %>
138
+ </div>
139
+ </p>
140
+
141
+ <!-- layout -->
142
+ <% if params[:layout] %>
143
+ <%= render :partial=>params[:layout] %>
144
+ <% elsif @knowledge.default_layout %>
145
+ <%= render :partial => layouts[@knowledge.default_layout] %>
146
+ <!-- render�̏�����<table>�̒�����������Ȃ̂ŁA�ϐ�layouts�̒l�͍ŏ��ɓ���Ă����Ȃ���΂����Ȃ� -->
147
+ <% else %>
148
+ <%= render :partial=>layouts[0] %>
149
+ <% end %>
150
+
151
+ <!-- description -->
152
+ <div>
153
+ <b>Description:</b>
154
+ <%= h @knowledge.description %>
155
+ </div>
156
+
157
+ <!-- path -->
158
+ <hr>
159
+ <div class="path">
160
+ <b>Path:</b>
161
+ <%= h @knowledge.node.path %>
162
+ </div>
163
+
164
+ <!-- owner -->
165
+ <div class='owner'>
166
+ <b>Owner:</b>
167
+ <%= @knowledge.owner.login %>
168
+ </div>
169
+
170
+ <!-- last update time -->
171
+ <div>
172
+ <b>Last Update:</b>
173
+ <%= @knowledge.mtime.to_s[0..-12] %>
174
+ </div>
175
+ <br>
176
+
177
+ <%= link_to 'Edit', :controller => 'knowledge', :action => 'edit', :path => @knowledge.node.path, :from_list => 'from_list' %> | <%= link_to 'Back to List', :action => 'list' %>
178
+ <br>
179
+ <br>
180
+ <hr size="10px" noshade>
181
+
182
+ <%
183
+ if @knowledge.comment_on
184
+ parent_of_comment = Knowledge.find(@knowledge.comment_on, :user => @user)
185
+ %>
186
+ <h3 class="davis">
187
+ This is a comment of <%= link_to h(parent_of_comment.title), :action => 'show', :path => parent_of_comment.path %>.
188
+ </h3>
189
+ <% end %>
190
+
191
+ <!-- comments -->
192
+ <div id="comments">
193
+ <%= render(:partial=>"comments") %>
194
+ </div>
195
+
196
+ </body>
@@ -0,0 +1,105 @@
1
+ <html>
2
+ <head>
3
+ <title>Gfdnavi</title>
4
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
5
+ <%= stylesheet_link_tag 'gfdnavi' %>
6
+ <%= javascript_include_tag 'application' %>
7
+ <%= javascript_include_tag 'prototype' %>
8
+ <%= javascript_include_tag 'effects' %>
9
+ <%= javascript_include_tag 'dragdrop' %>
10
+ <%= javascript_include_tag 'gfdnavi' %>
11
+ <%= javascript_include_tag "progress" %>
12
+ <%= javascript_include_tag "resizable_box" %>
13
+ <script type="text/javascript">
14
+ gfdnaviUrlRoot = "<%= relative_url_root %>";
15
+ </script>
16
+ <%
17
+ case controller.controller_name.downcase
18
+ when "search", "finder"
19
+ %>
20
+ <%= stylesheet_link_tag 'search' %>
21
+ <%= stylesheet_link_tag 'tree' %>
22
+ <%= stylesheet_link_tag 'description' %>
23
+ <% if controller.action_name == "index" %>
24
+ <%= javascript_include_tag "directory_tree" %>
25
+ <!--[if IE]>
26
+ <%= stylesheet_link_tag 'tree_for_ie' %>
27
+ <![endif]-->
28
+ <%
29
+ end
30
+ when "analysis"
31
+ %>
32
+ <%= stylesheet_link_tag 'analysis' %>
33
+ <%= javascript_include_tag "analysis" %>
34
+ <%= javascript_include_tag "slider" %>
35
+ <%= javascript_include_tag "tab" %>
36
+ <%
37
+ when "description", "nodes"
38
+ %>
39
+ <%= stylesheet_link_tag 'description' %>
40
+ <%
41
+ when "function"
42
+ %>
43
+ <%= javascript_include_tag "function" %>
44
+ <%
45
+ when "draw_method"
46
+ %>
47
+ <%= javascript_include_tag "draw_method" %>
48
+ <%
49
+ when "work_flow"
50
+ %>
51
+ <%= stylesheet_link_tag "work_flow" %>
52
+ <!--[if IE]>
53
+ <%= javascript_include_tag "excanvas" %>
54
+ <![endif]-->
55
+ <%= javascript_include_tag "work_flow" %>
56
+ <%
57
+ when "knowledge"
58
+ %>
59
+ <%= stylesheet_link_tag 'knowledge' %>
60
+ <%= javascript_include_tag "knowledge" %>
61
+ <%
62
+
63
+ end
64
+
65
+ %>
66
+ </head>
67
+ <body>
68
+ <div id="banner">
69
+ <%= image_tag("gfdnavi_logo_mini.png") %>
70
+ <%= @page_title || "Gfdnavi" %>
71
+ <div style="clear:left"></div>
72
+ </div>
73
+ <div id="main_menu">
74
+ <table border=0 width=97% > <!-- A bit smaller than 100% for IE -->
75
+ <tr><td align="left">
76
+ <%= link_to("Top", ".." ) %>
77
+ <%= link_to("Finder", :controller => "finder") %>
78
+ <%= link_to("Explorer", :controller => "explorer") %>
79
+ <%= link_to("Analysis", :controller => "analysis") %>
80
+ <%= link_to("Knowledge", :controller => "knowledge") %>
81
+ <%
82
+ unless GFDNAVI_DISABLE_USER && session[:user].nil?
83
+ if session[:user] %>
84
+ <%= link_to("User", :controller => "user") %>
85
+ <%= link_to("Logout", :controller => "user", :action => "logout") %>
86
+ <% else %>
87
+ <%= link_to("Login", :controller => "user", :action => "login") %>
88
+ <%
89
+ end
90
+ end
91
+ %>
92
+ </td><td align="right">
93
+ <%= link_to("Help",
94
+ "http://www.gfd-dennou.org/arch/davis/gfdnavi/doc/", {:popup=>true}) %>
95
+ </td></tr>
96
+ </table>
97
+ </div>
98
+ <div id="main_frame">
99
+ <% if flash[:notice] -%>
100
+ <div id="notice"><%= flash[:notice] %></div>
101
+ <% end -%>
102
+ <%= @content_for_layout %>
103
+ </div>
104
+ </body>
105
+ </html>
@@ -0,0 +1,89 @@
1
+ <%
2
+ anc = @ancestors
3
+ anc.each_with_index do |dsc,idx|
4
+ %>
5
+ <div class="dir_description">
6
+ <p class="description">
7
+ <%= "#{idx+1}." %>
8
+ <%
9
+ case dsc[:type]
10
+ when "directory"
11
+ %>
12
+ <%= image_tag('tree/folder.png', :size=>'17x19', :border => 0) %>
13
+ <% when "variable" %>
14
+ <%= image_tag('tree/binary.png', :size=>'17x19', :border => 0) %>
15
+ <% when "image" %>
16
+ <%= image_tag('tree/image2.png', :size=>'17x19', :border => 0) %>
17
+ <% end %>
18
+ <b>
19
+ <% if dsc[:path]
20
+ if @site
21
+ %>
22
+ <a href="<%= data_url(:path => dsc[:path].sub(/^\//,""), :format=>"html", :site=>"#{@site}") %>"><%= h(dsc[:name]) %></a>
23
+ <% else %>
24
+ <a href="<%= data_url(:path => dsc[:path].sub(/^\//,""), :format=>"html") %>"><%= h(dsc[:name]) %></a>
25
+ <% end %>
26
+ <% else %>
27
+ <%= h(dsc[:name]) %>
28
+ <% end %>
29
+ </b>
30
+ <% if dsc[:infomation_url] %>
31
+ &nbsp;<a href="<%= h(dsc[:infomation_url]) %>" class="description">info</a>
32
+ <% end %>
33
+ <i>
34
+ <% if (dsc[:title] != dsc[:name]) %>
35
+ &nbsp;&nbsp; : &nbsp;&nbsp; <%= h(dsc[:title]) %>
36
+ <% end %>
37
+ </i>
38
+ </p>
39
+ <% end %>
40
+ <% anc.length.times do %>
41
+ </div>
42
+ <% end %>
43
+
44
+ <hr/>
45
+
46
+ <%
47
+ count=0
48
+ anc.each_with_index do |dsc,idx|
49
+ count += 1
50
+ %>
51
+ <div class="title_description">
52
+ <p class="description"><b>
53
+ <%= "#{idx+1}." %>
54
+ <%= h(dsc[:title]) %>
55
+ </b></p>
56
+ </div>
57
+ <div class="description_description">
58
+ <p>
59
+ <b>Description:</b>
60
+ <%=h(dsc[:description]) %>
61
+ </p>
62
+ <p>
63
+ <%
64
+ if dsc[:keyword_attributes].length > 0
65
+ alid = "att_label"+count.to_s
66
+ acid = "att_contents"+count.to_s
67
+ %>
68
+ <div class="att_label" id='<%=alid%>'
69
+ onclick="Element.show('<%=acid%>'); Element.hide('<%=alid%>');">
70
+ other attributes
71
+ </div>
72
+ <div class="att_contents" id='<%=acid%>' style="display:none"
73
+ onclick="Element.hide('<%=acid%>'); Element.show('<%=alid%>');">
74
+ <div class="att_label">
75
+ hide
76
+ </div>
77
+ <table>
78
+ <% dsc[:keyword_attributes].each{|kwa| %>
79
+ <tr>
80
+ <td><%= h(kwa[:name]) %></td>
81
+ <td><%= h(kwa[:value]) %></td>
82
+ </tr>
83
+ <% } %>
84
+ </table>
85
+ </div>
86
+ <% end %>
87
+ </p>
88
+ </div>
89
+ <% end %>
@@ -0,0 +1,75 @@
1
+ <%
2
+ node = @node
3
+ %>
4
+ <table border="1">
5
+ <tr>
6
+ <th>data</th>
7
+ <td>
8
+ <table border="1">
9
+ <% node.original_nodes.each{|nod| %>
10
+ <tr>
11
+ <td>
12
+ <% case nod
13
+ when Node %>
14
+ <%= link_to nod.path, data_url(:path=>nod.path,:format=>"html") %>
15
+ <% when VirtualNode %>
16
+ <% @node = node %>
17
+ <%= render :partial => "description_methods_table" %>
18
+ </td>
19
+ <% end %>
20
+ </tr>
21
+ <% } %>
22
+ </table>
23
+ </td>
24
+ </tr>
25
+ <tr>
26
+ <th>functions</th>
27
+ <td>
28
+ <table border="1">
29
+ <% node.functions.each{|func| %>
30
+ <tr>
31
+ <td>
32
+ <%
33
+ case func[:type]
34
+ when :func
35
+ %>
36
+ path=<%= link_to func[:func].path, data_url(:path=>func[:func].path, :format=>"html") %>
37
+ </td>
38
+ <td>
39
+ <% if func[:args] %>
40
+ arguments=<%= func[:args].inspect %>
41
+ <% end %>
42
+ <% when :index %>
43
+ <%= func[:index].inspect %>
44
+ </td>
45
+ <td>
46
+ <% when :cut %>
47
+ cut
48
+ </td>
49
+ <td>
50
+ <%= func[:value].join(", ") %>
51
+ <% end %>
52
+ </td>
53
+ </tr>
54
+ <% } %>
55
+ </table>
56
+ </td>
57
+ </tr>
58
+ <% if dm = node.draw_method %>
59
+ <tr>
60
+ <th>draw method</th>
61
+ <td>
62
+ path=<%= link_to dm[0].path, data_url(:path=>dm[0].path, :format=>"html") %>
63
+ </td>
64
+ <td>
65
+ <% if dm[1] && dm[1].keys.length > 0 %>
66
+ arguments=<%= dm[1].inspect %>
67
+ <% end %>
68
+ </td>
69
+ </tr>
70
+ <% end %>
71
+ <tr>
72
+ </table>
73
+
74
+
75
+ <%= @node.get.gsub(/\n/,"<br/>") %>