gfdnavi 1.3.0.0

data/app/views/user_mailer/signup_confirm.rhtml

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+Dear <%= @user.full_name %>
+
+Thank you for your signing up for gfdnavi(<%=@url%>).
+This mail was automatically sent for the norification.
+
+If you do not receive an email informing the authorization in a few days,
+please ask to <%= GFDNAVI_ADMIN_EMAIL %>.
+
+
+Your information:
+ login name: <%= @user.login %>
+ full name: <%= @user.full_name %>
+ email address: <%= @user.email_address %>
+ affiliation: <%= @user.affiliation %>

data/app/views/user_mailer/signup_inform.rhtml

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+Dear gfdnavi administrators
+
+Following user signed up for gfdnavi.
+Please click the following link or visited to gfdnavi(<%= @url %>) and deside to accept or reject the request.
+accept: <%= @url %>user/accept_signup/<%= @user.id %>
+reject: <%= @url %>user/reject_signup/<%= @user.id %>
+
+
+User's information:
+ login name: <%= @user.login %>
+ full name: <%= @user.full_name %>
+ email address: <%= @user.email_address %>
+ affiliation: <%= @user.affiliation %>

data/app/views/user_mailer/signup_rejected.rhtml

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+Dear <%= @user.full_name %>
+
+We are sorry but your request to sign up gfdnavi was rejected.
+
+URL: <%= @url %>
+
+Your account information:
+ login name: <%= @user.login %>
+ full name: <%= @user.full_name %>
+ email address: <%= @user.email_address %>
+ affiliation: <%= @user.affiliation %>

data/app/views/work_flow/_push_wsdls.rhtml

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+<%
+@wsdls.each do |wsdl|
+  apis = @apis[wsdl]
+  names = apis.keys.sort
+  forms = Array.new
+  outputs = Array.new
+  names.each{|name|
+    api = apis[name]
+    form = ""
+    if /^http:\/\// =~ wsdl
+      form += wsdl
+      form += hidden_field_tag("apis[api_id][uri_wsdl]", wsdl)
+    else
+      form += "URI of WSDL: "
+      form += text_field_tag("apis[api_id][uri_wsdl]", "http://", :size=>50)
+    end
+    form += hidden_field_tag("apis[api_id][api_name]", name)
+    form += '<hr style="margin:5px 0"/>'
+    form += 'Input'
+    form += '<ul style="margin:0">'
+    api[:input].each do |key,val|
+      html, script = get_input_html([key], val)
+      if script
+%>
+  <%= script %>
+<%
+      end
+      form += '<li>'
+      form += "#{key}: "
+      form += html
+      form += "</li>"
+    end
+    form += '</ul>'
+    form += '<hr style="margin:5px 0"/>'
+    form += 'Output'
+    form += '<ul style="margin:0">'
+    api[:output].each{|key,val|
+      form += '<li>'
+      form += "#{key}: "
+      form += get_output_text(val, "html")
+      form += '</li>'
+    }
+    form += '</ul>'
+    forms.push form
+
+    output = "["
+    output += api[:output].collect{|key,val|
+      get_output_text(val, "list", key)
+    }.join(",")
+    output += "]"
+    outputs.push output
+  }
+%>
+  new Wsdl('<%= wsdl %>', ['<%= names.join("','") %>'], ['<%= forms.join("','") %>'], [<%= outputs.join(',') %>]);
+<% end %>

data/app/views/work_flow/index.rhtml

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+<div class="list_box" style="width:30%;">
+  <div class="title">WSDL list</div>
+  <div id="wsdl_list" class="list">
+  </div>
+  <% form_remote_tag(:loading => "document.body.style.cursor='wait';",
+                     :complete => "document.body.style.cursor='auto';",
+                     :url => {:action=>:add_wsdl}) { %>
+    <%= text_field_tag("url", "http://", :size=>"30") %>
+    <br/>
+    <%= submit_tag("add WSDL") %>
+  <% } %>
+</div>
+
+<div class="list_box" style="width:10%">
+  <div class="title">API list</div>
+  <div id="api_list" class="list">
+  </div>
+</div>
+
+<div class="canvas_div" style="margin-left:45%;margin-top:10;width:510;padding-left:10;">
+
+  <div class="title">Api entity chart</div>
+  <div id="canvas_chart">
+    <canvas id="canvas" height="300" width="500"></canvas>
+    <div id="api_entities"></div>
+  </div>
+
+  <div id="form_div" style="width:100%;height:200">
+    <form id="entity_form">
+    </form>
+  </div>
+
+  <div>
+    <%= button_to_function("Execute", "execute()") %><br/>
+    <%= button_to_function("Get Ruby Code", "get_ruby_code(this)") %>
+  </div>
+
+</div>
+
+<script>
+  <%= render :partial => "push_wsdls" %>
+  window.onload = function() {
+    canvas = $('canvas');
+    ctx = canvas.getContext('2d');
+  };
+</script>

data/config/database.yml.example

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+# MySQL (default setup).  Versions 4.1 and 5.0 are recommended.
+#
+# Install the MySQL driver:
+#   gem install mysql
+# On MacOS X:
+#   gem install mysql -- --include=/usr/local/lib
+# On Windows:
+#   There is no gem for Windows.  Install mysql.so from RubyForApache.
+#   http://rubyforge.org/projects/rubyforapache
+#
+# And be sure to use new-style password hashing:
+#   http://dev.mysql.com/doc/refman/5.0/en/old-client.html
+development:
+  adapter: mysql
+  database: gfdnavi_development
+  username: root
+  password:
+  host: localhost
+
+# Warning: The database defined as 'test' will be erased and
+# re-generated from your development database when you run 'rake'.
+# Do not set this db to the same as development or production.
+test:
+  adapter: mysql
+  database: gfdnavi_test
+  username: root
+  password:
+  host: localhost
+
+production:
+  adapter: mysql
+  database: gfdnavi_production
+  username: root
+  password: 
+  host: localhost

data/config/environment.rb

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+# Be sure to restart your server when you modify this file
+
+# Uncomment below to force Rails into production mode when
+# you don't control web/app server and can't set it the proper way
+# ENV['RAILS_ENV'] ||= 'production'
+
+# Specifies gem version of Rails to use when vendor/rails is not present
+#RAILS_GEM_VERSION = '2.0.2' unless defined? RAILS_GEM_VERSION
+
+# load configurations of gfdnavi in gfdnavi.yml
+require File.join(File.dirname(__FILE__), 'load_config')
+
+# Bootstrap the Rails environment, frameworks, and default configuration
+require File.join(File.dirname(__FILE__), 'boot')
+
+Rails::Initializer.run do |config|
+  # Settings in config/environments/* take precedence over those specified here.
+  # Application configuration should go into files in config/initializers
+  # -- all .rb files in that directory are automatically loaded.
+  # See Rails::Configuration for more options.
+
+  # Skip frameworks you're not going to use (only works if using vendor/rails).
+  # To use Rails without a database, you must remove the Active Record framework
+  # config.frameworks -= [ :active_record, :active_resource, :action_mailer ]
+
+  # Only load the plugins named here, in the order given. By default, all plugins 
+  # in vendor/plugins are loaded in alphabetical order.
+  # :all can be used as a placeholder for all plugins not explicitly named
+  # config.plugins = [ :exception_notification, :ssl_requirement, :all ]
+
+  # Add additional load paths for your own custom dirs
+  # config.load_paths += %W( #{RAILS_ROOT}/extras )
+
+  # Force all environments to use the same logger level
+  # (by default production uses :info, the others :debug)
+  # config.log_level = :debug
+
+  # Your secret key for verifying cookie session data integrity.
+  # If you change this key, all old sessions will become invalid!
+  # Make sure the secret is at least 30 characters and all random, 
+  # no regular words or you'll be exposed to dictionary attacks.
+  if config.action_controller.respond_to?("session")
+    config.action_controller.session = {
+      :session_key => '_test_session',
+      :secret      => GFDNAVI_SECRET
+    }
+  end
+
+  # Use the database for sessions instead of the cookie-based default,
+  # which shouldn't be used to store highly confidential information
+  # (create the session table with 'rake db:sessions:create')
+  # config.action_controller.session_store = :active_record_store
+  config.action_controller.session_store = :p_store
+
+  # Use SQL instead of Active Record's schema dumper when creating the test database.
+  # This is necessary if your schema can't be completely dumped by the schema dumper,
+  # like if you have constraints or database-specific column types
+  # config.active_record.schema_format = :sql
+
+  # Activate observers that should always be running
+  # config.active_record.observers = :cacher, :garbage_collector
+
+  # Make Active Record use UTC-base instead of local time
+  # config.active_record.default_timezone = :utc
+  
+  ENV['http_proxy'] = GFDNAVI_PROXY
+  
+end

data/config/gfdnavi.yml.example

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+data_path: RAILS_ROOT/data
+
+#other_gfdnavi_servers:
+#  - http://localhost:2000/
+
+#remote_data_paths:
+#  - http://test.opendap.org/opendap-3.7/nph-dods/data/
+
+#diagram_path: RAILS_ROOT/public/diagrams
+
+user_path: RAILS_ROOT/usr
+
+work_path: RAILS_ROOT/tmp/work
+
+ignored_dirs:
+  - !ruby/regexp /^CVS$/i
+  - cvsroot
+
+#display:                    # This is obsolete; use 'DISPLAY' in 'env'
+
+debug: true
+
+benchmark: false
+
+disable_user: false
+
+proxy: 
+
+using_proxy: false
+
+allow_any_openid: false
+
+paginate_per: 10
+
+diagram_cache_path: RAILS_ROOT/tmp/diagram_cache
+
+data_cache_path: RAILS_ROOT/tmp/data_cache
+
+google_map_key: ABQIAAAAfkj1xmBThQOFWkus8Ag_gRTJQa0g3IQ9GZqIMmInSLzwtGDKaBRqIpr19_qp5TBIIzBjbp3ONZnCeA     # for localhost:3000
+
+passphrase: You must change me!!
+
+cross_search_center_server: http://localhost:3010/display/server_list
+
+secret: You must change me !! (at least 30 characters)
+
+session_duration: 180 # in minute
+
+admin:
+  name: Gfdnavi Admin
+  email: root@example.org
+
+enable_email: false
+smtp:
+  :address: localhost
+  :port: 25
+  :domain: example.org
+  :authentication: :plain
+
+env:
+#  DISPLAY: ":99.0"
+#  RAILS_ENV: production
+
+#------------
+# maximum array size to read in onto run-time memory (soft limit).
+# unlimited if not set.
+soft_limit_array_size: 2000000
+
+#-------------
+# maximum array size to read in onto run-time memory (hard limit).
+# unlimited if not set.
+#hard_limit_array_size: 5000000
+
+ignored_attributes:
+  - _FillValue
+  - missing_value
+  - valid_min
+  - valid_max
+  - valid_range
+  - add_offset
+  - scale_factor
+
+invisible_attributes:
+  - description
+  - Description
+  - textbody
+  - actual_range
+  - GRIB_id
+  - least_significant_digit
+  - precision
+  - coordinates
+  - var_desc
+  - level_desc
+  - parent_stat
+

data/config/load_config.rb

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+# load configuration for gfdnavi
+
+require "fileutils"
+require "yaml"
+require "rubygems"
+require "action_mailer"
+
+def gfdnavi_path( path )
+  path = path.gsub( /RAILS_ROOT/, File.expand_path(RAILS_ROOT) )
+  path.sub(/\/$/, "")
+end
+
+def gfdnavi_configuration( key, allow_nil = false )
+  val = @gfdnavi_configuration[key]
+  if allow_nil || val
+    return val
+  else
+    STDERR.print <<-EOS
+*************************
+ Error occuered while reading the gfdnavi configuration file (#{@gfdnavi_configuration_file}).
+ Key "#{key}" was not found in your configuration file.
+ See config/gfdnavi.yml.example and you need to update it.
+*************************
+    EOS
+    abort
+  end
+end
+
+
+@gfdnavi_configuration_file = File.join(File.dirname(__FILE__), 'gfdnavi.yml')
+begin
+  @gfdnavi_configuration = YAML::load( File.read(@gfdnavi_configuration_file) )
+rescue IOError, SystemCallError
+  $! = nil
+  STDERR.print <<-EOS
+*************************
+ Error occuered while reading the gfdnavi configuration file (#{@gfdnavi_configuration_file}).
+ You probably need to copy config/gfdnavi.yml.example (and to edit it if needed).
+ *************************
+  EOS
+  abort
+end
+
+if (disp = gfdnavi_configuration('display',true))
+  STDERR.print "'display' is obsolete; use 'DISPLAY' in 'env'"
+  ENV['DISPLAY'] = disp
+end
+
+env = gfdnavi_configuration('env', true)
+if Hash === env
+  env.each{|key, val|
+    ENV[key] = val
+  }
+elsif ! env.nil?
+  raise "env must be a Hash"
+end
+
+RAILS_ENV.replace(ENV['RAILS_ENV']) if defined?(RAILS_ENV) && ENV['RAILS_ENV']
+
+require File.join(File.dirname(__FILE__), 'boot')
+
+
+GFDNAVI_DATA_PATH = gfdnavi_path( gfdnavi_configuration('data_path') )
+GFDNAVI_PUBLIC_PATH = File.join(File.expand_path(RAILS_ROOT), 'public')
+if Regexp.new('^'+GFDNAVI_PUBLIC_PATH+'(.*)') =~ GFDNAVI_DATA_PATH
+  # data are directly accessible
+  GFDNAVI_DATA_URL_PREFIX = $1                   # path after '/public'
+  #  GFDNAVI_DATA_URL_PREFIX.sub!(/([^\/])$/,'\1/')     # Add trailing '/'
+else
+  # data are NOT directly accessible
+  GFDNAVI_DATA_URL_PREFIX = ""
+end
+
+GFDNAVI_REMOTE_DATA_PATHS = gfdnavi_configuration('remote_data_paths',true)
+if GFDNAVI_REMOTE_DATA_PATHS and !GFDNAVI_REMOTE_DATA_PATHS.is_a?(Array)
+  raise "gfdnavi config file error : remote_data_paths must be an array"
+end
+
+GFDNAVI_OTHER_GFDNAVI_SERVERS = gfdnavi_configuration("other_gfdnavi_servers",true)
+if GFDNAVI_OTHER_GFDNAVI_SERVERS && !Array === GFDNAVI_OTHER_GFDNAVI_SERVERS
+  raise "gfdnavi config file error: other_gfdnavi_servers must be an array"
+end
+
+GFDNAVI_USER_PATH = gfdnavi_path( gfdnavi_configuration('user_path') )
+raise("Name of the user directory must be 'usr'") if File.basename(GFDNAVI_USER_PATH) != 'usr'
+
+GFDNAVI_WORK_PATH = gfdnavi_path( gfdnavi_configuration('work_path') )
+
+
+[GFDNAVI_DATA_PATH, GFDNAVI_USER_PATH, GFDNAVI_WORK_PATH].each{|path|
+  FileUtils.makedirs(path) unless File.exist?(path)
+}
+
+GFDNAVI_DIAGRAM_CACHE_PATH = gfdnavi_path( gfdnavi_configuration('diagram_cache_path') )
+FileUtils.makedirs(GFDNAVI_DIAGRAM_CACHE_PATH) unless File.exist?(GFDNAVI_DIAGRAM_CACHE_PATH)
+
+GFDNAVI_DATA_CACHE_PATH = gfdnavi_path( gfdnavi_configuration('data_cache_path') )
+FileUtils.makedirs(GFDNAVI_DATA_CACHE_PATH) unless File.exist?(GFDNAVI_DATA_CACHE_PATH)
+
+
+GFDNAVI_IGNORED_DIRS = gfdnavi_configuration('ignored_dirs')
+
+GFDNAVI_DEBUG = (gfdnavi_configuration("debug",true) == true)
+
+GFDNAVI_BENCHMARK = (gfdnavi_configuration("benchmark",true) == true)
+
+GFDNAVI_DISABLE_USER = (gfdnavi_configuration("disable_user",true) == true)
+
+GFDNAVI_PROXY = gfdnavi_configuration('proxy',true)
+
+GFDNAVI_USING_PROXY = (gfdnavi_configuration("using_proxy",true) == true)
+
+GFDNAVI_ALLOW_ANY_OPENID = (gfdnavi_configuration("allow_any_openid",true) == true)
+
+GFDNAVI_PAGINATE_PER = gfdnavi_configuration("paginate_per")
+
+GFDNAVI_GOOGLE_MAP_KEY = gfdnavi_configuration('google_map_key')
+
+GFDNAVI_CROSS_SEARCH_SERVER = gfdnavi_configuration('cross_search_center_server')
+
+GFDNAVI_PASSPHRASE = gfdnavi_configuration('passphrase')
+
+GFDNAVI_SECRET = gfdnavi_configuration('secret')
+
+GFDNAVI_SESSION_DURATION = gfdnavi_configuration('session_duration')
+
+GFDNAVI_IGNORED_ATTRS = gfdnavi_configuration('ignored_attributes')
+
+GFDNAVI_INVISIBLE_ATTRS = gfdnavi_configuration('invisible_attributes')
+
+admin = gfdnavi_configuration('admin')
+GFDNAVI_ADMIN_NAME = admin['name']
+GFDNAVI_ADMIN_EMAIL = admin['email']
+
+GFDNAVI_ENABLE_EMAIL = (gfdnavi_configuration("enable_email",true) == true)
+
+if GFDNAVI_ENABLE_EMAIL
+  ActionMailer::Base.smtp_settings = gfdnavi_configuration('smtp')
+end
+
+GPHYS_READ_SIZE_LIMIT_1 = sl = 
+    gfdnavi_configuration("soft_limit_array_size",true)
+GPHYS_READ_SIZE_LIMIT_2 = hl = 
+    gfdnavi_configuration("hard_limit_array_size",true)
+if hl && sl && hl <= sl
+  raise "hard limit must be greather than soft limit" 
+end
+
+# clean up
+@gfdnavi_configuration_file = nil
+@gfdnavi_configuration = nil