commonmeta-ruby 3.0.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (791) hide show
  1. checksums.yaml +7 -0
  2. data/.github/workflows/build.yml +38 -0
  3. data/.github/workflows/changelog.yml +36 -0
  4. data/.github/workflows/codeql-analysis.yml +72 -0
  5. data/.github/workflows/rubocop.yml +50 -0
  6. data/.gitignore +59 -0
  7. data/.rubocop.yml +182 -0
  8. data/.rubocop_todo.yml +76 -0
  9. data/.tool-versions +1 -0
  10. data/CHANGELOG.md +124 -0
  11. data/CITATION +16 -0
  12. data/CITATION.cff +20 -0
  13. data/Gemfile +5 -0
  14. data/Gemfile.lock +270 -0
  15. data/LICENSE.md +21 -0
  16. data/README.md +733 -0
  17. data/Rakefile +13 -0
  18. data/bin/commonmeta +9 -0
  19. data/commonmeta.gemspec +68 -0
  20. data/lib/commonmeta/array.rb +13 -0
  21. data/lib/commonmeta/author_utils.rb +172 -0
  22. data/lib/commonmeta/cli.rb +70 -0
  23. data/lib/commonmeta/crossref_utils.rb +343 -0
  24. data/lib/commonmeta/doi_utils.rb +81 -0
  25. data/lib/commonmeta/metadata.rb +269 -0
  26. data/lib/commonmeta/metadata_utils.rb +184 -0
  27. data/lib/commonmeta/pubmed.rb +36 -0
  28. data/lib/commonmeta/readers/bibtex_reader.rb +62 -0
  29. data/lib/commonmeta/readers/cff_reader.rb +146 -0
  30. data/lib/commonmeta/readers/codemeta_reader.rb +90 -0
  31. data/lib/commonmeta/readers/crossref_reader.rb +186 -0
  32. data/lib/commonmeta/readers/crossref_xml_reader.rb +379 -0
  33. data/lib/commonmeta/readers/csl_reader.rb +85 -0
  34. data/lib/commonmeta/readers/datacite_reader.rb +169 -0
  35. data/lib/commonmeta/readers/npm_reader.rb +94 -0
  36. data/lib/commonmeta/readers/ris_reader.rb +66 -0
  37. data/lib/commonmeta/readers/schema_org_reader.rb +300 -0
  38. data/lib/commonmeta/schema_utils.rb +19 -0
  39. data/lib/commonmeta/string.rb +7 -0
  40. data/lib/commonmeta/utils.rb +1351 -0
  41. data/lib/commonmeta/version.rb +5 -0
  42. data/lib/commonmeta/whitelist_scrubber.rb +54 -0
  43. data/lib/commonmeta/writers/bibtex_writer.rb +36 -0
  44. data/lib/commonmeta/writers/cff_writer.rb +63 -0
  45. data/lib/commonmeta/writers/citation_writer.rb +14 -0
  46. data/lib/commonmeta/writers/codemeta_writer.rb +33 -0
  47. data/lib/commonmeta/writers/crossref_xml_writer.rb +11 -0
  48. data/lib/commonmeta/writers/csl_writer.rb +11 -0
  49. data/lib/commonmeta/writers/csv_writer.rb +26 -0
  50. data/lib/commonmeta/writers/datacite_writer.rb +94 -0
  51. data/lib/commonmeta/writers/jats_writer.rb +138 -0
  52. data/lib/commonmeta/writers/rdf_xml_writer.rb +11 -0
  53. data/lib/commonmeta/writers/ris_writer.rb +41 -0
  54. data/lib/commonmeta/writers/schema_org_writer.rb +61 -0
  55. data/lib/commonmeta/writers/turtle_writer.rb +11 -0
  56. data/lib/commonmeta/xml_converter.rb +14 -0
  57. data/lib/commonmeta.rb +35 -0
  58. data/resources/2008/09/xsd.xsl +997 -0
  59. data/resources/cff.json +1827 -0
  60. data/resources/commonmeta_v0.9.json +393 -0
  61. data/resources/crossref/AccessIndicators.xsd +47 -0
  62. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
  63. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
  64. data/resources/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
  65. data/resources/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
  66. data/resources/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
  67. data/resources/crossref/JATS-journalpublishing1.xsd +6176 -0
  68. data/resources/crossref/clinicaltrials.xsd +61 -0
  69. data/resources/crossref/common5.3.1.xsd +1530 -0
  70. data/resources/crossref/crossref5.3.1.xsd +1949 -0
  71. data/resources/crossref/crossref_query_output3.0.xsd +1097 -0
  72. data/resources/crossref/fundref.xsd +49 -0
  73. data/resources/crossref/module-ali.xsd +39 -0
  74. data/resources/crossref/relations.xsd +444 -0
  75. data/resources/datacite-contributorType-v4.xsd +35 -0
  76. data/resources/datacite-dateType-v4.xsd +25 -0
  77. data/resources/datacite-descriptionType-v4.xsd +19 -0
  78. data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
  79. data/resources/datacite-nameType-v4.xsd +10 -0
  80. data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
  81. data/resources/datacite-relationType-v4.xsd +49 -0
  82. data/resources/datacite-resourceType-v4.xsd +28 -0
  83. data/resources/datacite-titleType-v4.xsd +14 -0
  84. data/resources/datacite-v3.json +508 -0
  85. data/resources/datacite-v4.json +512 -0
  86. data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
  87. data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
  88. data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
  89. data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
  90. data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
  91. data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
  92. data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
  93. data/resources/kernel-3.0/include/xml.xsd +286 -0
  94. data/resources/kernel-3.0/metadata.xsd +377 -0
  95. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +35 -0
  96. data/resources/kernel-4/include/datacite-dateType-v4.xsd +25 -0
  97. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
  98. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  99. data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
  100. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  101. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  102. data/resources/kernel-4/include/datacite-relationType-v4.xsd +51 -0
  103. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +43 -0
  104. data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
  105. data/resources/kernel-4/include/xml.xsd +286 -0
  106. data/resources/kernel-4/metadata.xsd +707 -0
  107. data/resources/oecd/dfg-mappings.json +1866 -0
  108. data/resources/oecd/for-mappings.json +1099 -0
  109. data/resources/oecd/fos-mappings.json +198 -0
  110. data/resources/schema_org/jsonldcontext.json +7477 -0
  111. data/resources/spdx/licenses.json +5297 -0
  112. data/resources/xml.xsd +286 -0
  113. data/rubocop.sarif +0 -0
  114. data/sonar-project.properties +11 -0
  115. data/spec/array_spec.rb +22 -0
  116. data/spec/author_utils_spec.rb +132 -0
  117. data/spec/cli_spec.rb +309 -0
  118. data/spec/doi_utils_spec.rb +318 -0
  119. data/spec/find_from_format_spec.rb +144 -0
  120. data/spec/fixtures/CITATION.cff +83 -0
  121. data/spec/fixtures/aida.json +82 -0
  122. data/spec/fixtures/cgimp_package.json +18 -0
  123. data/spec/fixtures/cit_package.json +19 -0
  124. data/spec/fixtures/citeproc-no-author.json +26 -0
  125. data/spec/fixtures/citeproc-no-categories.json +21 -0
  126. data/spec/fixtures/citeproc.json +30 -0
  127. data/spec/fixtures/codemeta.json +86 -0
  128. data/spec/fixtures/codemeta_v2.json +86 -0
  129. data/spec/fixtures/crosscite.json +63 -0
  130. data/spec/fixtures/crossref.bib +14 -0
  131. data/spec/fixtures/crossref.json +572 -0
  132. data/spec/fixtures/crossref.ris +15 -0
  133. data/spec/fixtures/crossref.xml +606 -0
  134. data/spec/fixtures/datacite.json +86 -0
  135. data/spec/fixtures/datacite_software.json +21 -0
  136. data/spec/fixtures/datacite_software_missing_comma.json +18 -0
  137. data/spec/fixtures/datacite_software_overlapping_keys.json +18 -0
  138. data/spec/fixtures/datacite_software_version.json +74 -0
  139. data/spec/fixtures/edam_package.json +12 -0
  140. data/spec/fixtures/maremma/codemeta.json +36 -0
  141. data/spec/fixtures/pure.bib +14 -0
  142. data/spec/fixtures/pure.ris +15 -0
  143. data/spec/fixtures/pure.xml +188 -0
  144. data/spec/fixtures/ris_bug.ris +9 -0
  145. data/spec/fixtures/schema_4.0.xml +140 -0
  146. data/spec/fixtures/schema_org.json +49 -0
  147. data/spec/fixtures/schema_org_front-matter.json +32 -0
  148. data/spec/fixtures/schema_org_geolocation.json +82 -0
  149. data/spec/fixtures/schema_org_geoshape.json +550 -0
  150. data/spec/fixtures/schema_org_gtex.json +75 -0
  151. data/spec/fixtures/schema_org_list.json +12623 -0
  152. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +25 -0
  153. data/spec/fixtures/schema_org_topmed.json +53 -0
  154. data/spec/fixtures/schema_org_type_as_array.json +41 -0
  155. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/default.yml +110 -0
  156. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_bibtex.yml +110 -0
  157. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_crossref_xml.yml +110 -0
  158. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_datacite.yml +110 -0
  159. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_schema_org.yml +110 -0
  160. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/default.yml +55 -0
  161. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_bibtex.yml +55 -0
  162. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_crossref_xml.yml +55 -0
  163. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_datacite.yml +55 -0
  164. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_schema_org.yml +55 -0
  165. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/default.yml +299 -0
  166. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_bibtex.yml +299 -0
  167. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_citation.yml +299 -0
  168. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_crossref_xml.yml +299 -0
  169. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_datacite.yml +299 -0
  170. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_jats.yml +299 -0
  171. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_schema_org.yml +299 -0
  172. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/default.yml +172 -0
  173. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_bibtex.yml +172 -0
  174. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_citation.yml +172 -0
  175. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite.yml +172 -0
  176. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_jats.yml +172 -0
  177. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_schema_org.yml +172 -0
  178. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/default.yml +1098 -0
  179. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_datacite.yml +1098 -0
  180. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_schema_org.yml +1100 -0
  181. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/crossref.yml +55 -0
  182. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/datacite.yml +55 -0
  183. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/jalc.yml +55 -0
  184. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/kisti.yml +55 -0
  185. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/medra.yml +55 -0
  186. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/op.yml +55 -0
  187. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/author.yml +164 -0
  188. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/no_author.yml +164 -0
  189. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/single_author.yml +164 -0
  190. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/with_organization.yml +164 -0
  191. data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +247 -0
  192. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/crossref.yml +55 -0
  193. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/datacite.yml +55 -0
  194. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/jalc.yml +55 -0
  195. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/kisti.yml +55 -0
  196. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/medra.yml +55 -0
  197. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/not_found.yml +55 -0
  198. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/op.yml +55 -0
  199. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/crossref.yml +55 -0
  200. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +55 -0
  201. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/datacite.yml +55 -0
  202. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/datacite_doi_http.yml +55 -0
  203. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +55 -0
  204. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_for_match.yml +221 -0
  205. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +221 -0
  206. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_match.yml +221 -0
  207. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_no_match.yml +221 -0
  208. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/name_to_fos_for_match.yml +221 -0
  209. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/name_to_fos_match.yml +221 -0
  210. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/name_to_fos_no_match.yml +221 -0
  211. data/spec/fixtures/vcr_cassettes/Briard_Metadata/from_schema_org/with_id.yml +221 -0
  212. data/spec/fixtures/vcr_cassettes/Briard_Metadata/from_schema_org_creators/with_affiliation.yml +221 -0
  213. data/spec/fixtures/vcr_cassettes/Briard_Metadata/from_schema_org_creators/without_affiliation.yml +221 -0
  214. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/cff-converter-python.yml +200 -0
  215. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff.yml +154 -0
  216. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +154 -0
  217. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_codemeta_metadata/maremma.yml +86 -0
  218. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_codemeta_metadata/metadata_reports.yml +93 -0
  219. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +337 -0
  220. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +347 -0
  221. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +359 -0
  222. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/JaLC.yml +384 -0
  223. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/KISTI.yml +330 -0
  224. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/OP.yml +969 -0
  225. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/affiliation_is_space.yml +358 -0
  226. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/another_book.yml +312 -0
  227. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/another_book_chapter.yml +465 -0
  228. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/article_id_as_page_number.yml +276 -0
  229. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/author_literal.yml +492 -0
  230. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book.yml +523 -0
  231. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book_chapter.yml +377 -0
  232. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +336 -0
  233. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book_oup.yml +289 -0
  234. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/component.yml +289 -0
  235. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/dataset.yml +299 -0
  236. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/dataset_usda.yml +341 -0
  237. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/date_in_future.yml +570 -0
  238. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/dissertation.yml +301 -0
  239. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/empty_given_name.yml +303 -0
  240. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/invalid_date.yml +307 -0
  241. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article.yml +461 -0
  242. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +276 -0
  243. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_with.yml +470 -0
  244. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +519 -0
  245. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_with_funding.yml +456 -0
  246. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_issue.yml +270 -0
  247. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/mEDRA.yml +310 -0
  248. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/markup.yml +329 -0
  249. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/missing_creator.yml +307 -0
  250. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/multiple_issn.yml +393 -0
  251. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/multiple_titles.yml +265 -0
  252. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +860 -0
  253. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/not_found_error.yml +209 -0
  254. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/peer_review.yml +287 -0
  255. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/posted_content.yml +326 -0
  256. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/posted_content_copernicus.yml +297 -0
  257. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/report_osti.yml +315 -0
  258. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/vor_with_url.yml +451 -0
  259. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/yet_another_book.yml +816 -0
  260. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +324 -0
  261. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_raw/journal_article.yml +110 -0
  262. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datacite_metadata/dissertation.yml +152 -0
  263. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datacite_metadata/funding_references.yml +175 -0
  264. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datacite_metadata/subject_scheme.yml +328 -0
  265. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date/publication_date.yml +221 -0
  266. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_from_date_parts/date.yml +221 -0
  267. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_from_date_parts/year-month.yml +221 -0
  268. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_from_date_parts/year.yml +221 -0
  269. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_from_parts/date.yml +221 -0
  270. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_from_parts/year-month.yml +221 -0
  271. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_from_parts/year.yml +221 -0
  272. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_parts/date.yml +221 -0
  273. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_parts/year-month.yml +221 -0
  274. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_date_parts/year.yml +221 -0
  275. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datetime_from_time/future.yml +221 -0
  276. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datetime_from_time/invalid.yml +221 -0
  277. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datetime_from_time/nil.yml +221 -0
  278. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datetime_from_time/past.yml +221 -0
  279. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_datetime_from_time/present.yml +221 -0
  280. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_one_author/has_familyName.yml +133 -0
  281. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +153 -0
  282. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_one_author/is_organization.yml +164 -0
  283. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_one_author/name_with_affiliation_crossref.yml +247 -0
  284. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_one_author/only_familyName_and_givenName.yml +468 -0
  285. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/BlogPosting.yml +530 -0
  286. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +530 -0
  287. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +534 -0
  288. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/harvard_dataverse.yml +1838 -0
  289. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/pangaea.yml +468 -0
  290. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/upstream_blog.yml +885 -0
  291. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_schema_org_metadata/zenodo.yml +583 -0
  292. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_series_information/only_title.yml +221 -0
  293. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_series_information/title_and_pages.yml +221 -0
  294. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_series_information/title_volume_and_pages.yml +221 -0
  295. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_series_information/title_volume_issue_and_pages.yml +221 -0
  296. data/spec/fixtures/vcr_cassettes/Briard_Metadata/github/github_as_cff_url.yml +221 -0
  297. data/spec/fixtures/vcr_cassettes/Briard_Metadata/github/github_as_codemeta_url.yml +221 -0
  298. data/spec/fixtures/vcr_cassettes/Briard_Metadata/github/github_from_url.yml +221 -0
  299. data/spec/fixtures/vcr_cassettes/Briard_Metadata/github/github_from_url_cff_file.yml +221 -0
  300. data/spec/fixtures/vcr_cassettes/Briard_Metadata/github/github_from_url_file.yml +221 -0
  301. data/spec/fixtures/vcr_cassettes/Briard_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +55 -0
  302. data/spec/fixtures/vcr_cassettes/Briard_Metadata/handle_input/unknown_DOI_prefix.yml +55 -0
  303. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_comma.yml +164 -0
  304. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_family_name.yml +164 -0
  305. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_id.yml +164 -0
  306. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_known_given_name.yml +164 -0
  307. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_no_info.yml +164 -0
  308. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_orcid_id.yml +164 -0
  309. data/spec/fixtures/vcr_cassettes/Briard_Metadata/is_personal_name_/has_type_organization.yml +164 -0
  310. data/spec/fixtures/vcr_cassettes/Briard_Metadata/json_schema_errors/is_valid.yml +221 -0
  311. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_cc_url/not_found.yml +221 -0
  312. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_cc_url/with_trailing_slash.yml +221 -0
  313. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_cc_url/with_trailing_slash_and_to_https.yml +221 -0
  314. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/doi.yml +221 -0
  315. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/doi_as_url.yml +221 -0
  316. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/filename.yml +221 -0
  317. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/ftp.yml +221 -0
  318. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/invalid_url.yml +221 -0
  319. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/sandbox_via_options.yml +221 -0
  320. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/sandbox_via_url.yml +221 -0
  321. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/string.yml +221 -0
  322. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/url.yml +221 -0
  323. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_id/url_with_utf-8.yml +221 -0
  324. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_ids/doi.yml +221 -0
  325. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_ids/url.yml +221 -0
  326. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_issn/from_array.yml +221 -0
  327. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_issn/from_empty_array.yml +221 -0
  328. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_issn/from_hash.yml +221 -0
  329. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_issn/from_string.yml +221 -0
  330. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_url/uri.yml +221 -0
  331. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_url/with_trailing_slash.yml +221 -0
  332. data/spec/fixtures/vcr_cassettes/Briard_Metadata/normalize_url/with_trailing_slash_and_to_https.yml +221 -0
  333. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/array.yml +221 -0
  334. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/array_of_strings.yml +221 -0
  335. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/first.yml +221 -0
  336. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/hash.yml +221 -0
  337. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/hash_with_array_value.yml +221 -0
  338. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/nil.yml +221 -0
  339. data/spec/fixtures/vcr_cassettes/Briard_Metadata/parse_attributes/string.yml +221 -0
  340. data/spec/fixtures/vcr_cassettes/Briard_Metadata/random_doi/decode_anothe_doi.yml +221 -0
  341. data/spec/fixtures/vcr_cassettes/Briard_Metadata/random_doi/decode_doi.yml +221 -0
  342. data/spec/fixtures/vcr_cassettes/Briard_Metadata/random_doi/encode_doi.yml +221 -0
  343. data/spec/fixtures/vcr_cassettes/Briard_Metadata/sanitize/onlies_keep_specific_tags.yml +221 -0
  344. data/spec/fixtures/vcr_cassettes/Briard_Metadata/sanitize/removes_a_tags.yml +221 -0
  345. data/spec/fixtures/vcr_cassettes/Briard_Metadata/spdx/hsh_to_spdx_id.yml +221 -0
  346. data/spec/fixtures/vcr_cassettes/Briard_Metadata/spdx/hsh_to_spdx_not_found.yml +221 -0
  347. data/spec/fixtures/vcr_cassettes/Briard_Metadata/spdx/hsh_to_spdx_url.yml +221 -0
  348. data/spec/fixtures/vcr_cassettes/Briard_Metadata/spdx/name_to_spdx_exists.yml +221 -0
  349. data/spec/fixtures/vcr_cassettes/Briard_Metadata/spdx/name_to_spdx_id.yml +221 -0
  350. data/spec/fixtures/vcr_cassettes/Briard_Metadata/to_schema_org/with_id.yml +221 -0
  351. data/spec/fixtures/vcr_cassettes/Briard_Metadata/to_schema_org_identifiers/with_identifiers.yml +221 -0
  352. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid.yml +221 -0
  353. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_https.yml +221 -0
  354. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_id.yml +221 -0
  355. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_sandbox.yml +221 -0
  356. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_sandbox_https.yml +221 -0
  357. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_with_spaces.yml +221 -0
  358. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_wrong_id.yml +221 -0
  359. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid/validate_orcid_www.yml +221 -0
  360. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid_scheme/validate_orcid_scheme.yml +221 -0
  361. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid_scheme/validate_orcid_scheme_https.yml +221 -0
  362. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid_scheme/validate_orcid_scheme_trailing_slash.yml +221 -0
  363. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_orcid_scheme/validate_orcid_scheme_www.yml +221 -0
  364. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_url/DOI.yml +221 -0
  365. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_url/ISSN.yml +221 -0
  366. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_url/URL.yml +221 -0
  367. data/spec/fixtures/vcr_cassettes/Briard_Metadata/validate_url/string.yml +221 -0
  368. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/BlogPosting.yml +81 -0
  369. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/Dataset.yml +120 -0
  370. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +186 -0
  371. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/climate_data.yml +74 -0
  372. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/from_schema_org.yml +530 -0
  373. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +149 -0
  374. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/maremma.yml +86 -0
  375. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/text.yml +100 -0
  376. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/with_data_citation.yml +247 -0
  377. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/with_pages.yml +228 -0
  378. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +143 -0
  379. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +150 -0
  380. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +93 -0
  381. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/ruby-cff.yml +154 -0
  382. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Dataset.yml +120 -0
  383. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Journal_article.yml +247 -0
  384. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +299 -0
  385. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Missing_author.yml +199 -0
  386. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +75 -0
  387. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/software_w/version.yml +86 -0
  388. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +76 -0
  389. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +76 -0
  390. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +541 -0
  391. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/journal_article.yml +55 -0
  392. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +85 -0
  393. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/posted_content.yml +283 -0
  394. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/schema_org_from_another_science_blog.yml +123 -0
  395. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/schema_org_from_front_matter.yml +477 -0
  396. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_crossref/schema_org_from_upstream_blog.yml +1025 -0
  397. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/Another_dataset.yml +110 -0
  398. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/BlogPosting.yml +81 -0
  399. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/BlogPosting_schema_org.yml +530 -0
  400. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/Dataset.yml +120 -0
  401. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/container_title.yml +153 -0
  402. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/interactive_resource_without_dates.yml +75 -0
  403. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/journal_article.yml +247 -0
  404. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/keywords_subject_scheme.yml +149 -0
  405. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/maremma.yml +86 -0
  406. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/missing_creator.yml +199 -0
  407. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/multiple_abstracts.yml +101 -0
  408. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/organization_author.yml +314 -0
  409. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/software.yml +90 -0
  410. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/software_w/version.yml +86 -0
  411. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/with_only_first_page.yml +333 -0
  412. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csl/with_pages.yml +228 -0
  413. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csv/climate_data.yml +74 -0
  414. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csv/maremma.yml +86 -0
  415. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csv/text.yml +100 -0
  416. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csv/with_data_citation.yml +247 -0
  417. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_csv/with_pages.yml +228 -0
  418. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite/from_schema_org.yml +530 -0
  419. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite/maremma.yml +86 -0
  420. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite/with_ORCID_ID.yml +228 -0
  421. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite/with_data_citation.yml +247 -0
  422. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite_json/from_schema_org.yml +530 -0
  423. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite_json/maremma.yml +86 -0
  424. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite_json/with_ORCID_ID.yml +228 -0
  425. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_datacite_json/with_data_citation.yml +247 -0
  426. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +120 -0
  427. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +106 -0
  428. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/book_chapter.yml +163 -0
  429. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/from_schema_org.yml +530 -0
  430. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/interactive_resource_without_dates.yml +75 -0
  431. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/maremma.yml +86 -0
  432. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_ORCID_ID.yml +228 -0
  433. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_data_citation.yml +247 -0
  434. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_editor.yml +355 -0
  435. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/BlogPosting.yml +81 -0
  436. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/BlogPosting_schema_org.yml +530 -0
  437. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/journal_article.yml +247 -0
  438. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/maremma.yml +86 -0
  439. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/with_pages.yml +228 -0
  440. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/BlogPosting.yml +81 -0
  441. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +530 -0
  442. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/Dataset.yml +120 -0
  443. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/alternate_name.yml +138 -0
  444. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/journal_article.yml +115 -0
  445. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +149 -0
  446. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/maremma.yml +86 -0
  447. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/with_pages.yml +112 -0
  448. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Another_Schema_org_JSON.yml +120 -0
  449. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Funding.yml +192 -0
  450. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +150 -0
  451. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +98 -0
  452. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +160 -0
  453. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +153 -0
  454. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +131 -0
  455. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/data_catalog.yml +136 -0
  456. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/geo_location_box.yml +181 -0
  457. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +127 -0
  458. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/journal_article.yml +247 -0
  459. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +86 -0
  460. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/series_information.yml +174 -0
  461. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/subject_scheme.yml +199 -0
  462. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +201 -0
  463. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting.yml +81 -0
  464. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +530 -0
  465. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/Dataset.yml +120 -0
  466. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/journal_article.yml +247 -0
  467. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/with_pages.yml +228 -0
  468. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/default.yml +110 -0
  469. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_bibtex.yml +110 -0
  470. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_crossref_xml.yml +110 -0
  471. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_datacite.yml +110 -0
  472. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_schema_org.yml +110 -0
  473. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/default.yml +55 -0
  474. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_bibtex.yml +55 -0
  475. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_crossref_xml.yml +55 -0
  476. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_datacite.yml +55 -0
  477. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_schema_org.yml +55 -0
  478. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/default.yml +299 -0
  479. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_bibtex.yml +299 -0
  480. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_citation.yml +299 -0
  481. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_crossref_xml.yml +299 -0
  482. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_datacite.yml +299 -0
  483. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_jats.yml +299 -0
  484. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_schema_org.yml +299 -0
  485. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/default.yml +172 -0
  486. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_bibtex.yml +172 -0
  487. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_citation.yml +172 -0
  488. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_datacite.yml +172 -0
  489. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_jats.yml +172 -0
  490. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_schema_org.yml +172 -0
  491. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/default.yml +1096 -0
  492. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_datacite.yml +1096 -0
  493. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_schema_org.yml +1098 -0
  494. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/crossref.yml +55 -0
  495. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/datacite.yml +55 -0
  496. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/jalc.yml +55 -0
  497. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/kisti.yml +55 -0
  498. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/medra.yml +55 -0
  499. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/op.yml +55 -0
  500. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +247 -0
  501. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml +55 -0
  502. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/datacite.yml +55 -0
  503. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/jalc.yml +55 -0
  504. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/kisti.yml +55 -0
  505. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/medra.yml +55 -0
  506. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/not_found.yml +55 -0
  507. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/op.yml +55 -0
  508. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref.yml +55 -0
  509. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +55 -0
  510. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml +55 -0
  511. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml +55 -0
  512. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +55 -0
  513. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/hsh_to_fos_for_match.yml +221 -0
  514. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +221 -0
  515. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/hsh_to_fos_match.yml +221 -0
  516. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/hsh_to_fos_no_match.yml +221 -0
  517. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/name_to_fos_for_match.yml +221 -0
  518. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/name_to_fos_match.yml +221 -0
  519. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/fos/name_to_fos_no_match.yml +221 -0
  520. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/from_schema_org/with_id.yml +221 -0
  521. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml +200 -0
  522. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml +154 -0
  523. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +154 -0
  524. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/maremma.yml +86 -0
  525. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/metadata_reports.yml +93 -0
  526. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +337 -0
  527. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +347 -0
  528. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +170 -0
  529. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/JaLC.yml +384 -0
  530. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/KISTI.yml +330 -0
  531. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/OP.yml +969 -0
  532. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/affiliation_is_space.yml +358 -0
  533. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book.yml +312 -0
  534. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book_chapter.yml +465 -0
  535. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/article_id_as_page_number.yml +276 -0
  536. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/author_literal.yml +492 -0
  537. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book.yml +523 -0
  538. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter.yml +377 -0
  539. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +336 -0
  540. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_oup.yml +289 -0
  541. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/component.yml +289 -0
  542. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset.yml +300 -0
  543. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset_usda.yml +341 -0
  544. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/date_in_future.yml +570 -0
  545. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dissertation.yml +301 -0
  546. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/empty_given_name.yml +303 -0
  547. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/invalid_date.yml +307 -0
  548. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article.yml +461 -0
  549. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +276 -0
  550. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with.yml +908 -0
  551. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +519 -0
  552. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_funding.yml +456 -0
  553. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_issue.yml +270 -0
  554. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/mEDRA.yml +310 -0
  555. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/markup.yml +329 -0
  556. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/missing_creator.yml +307 -0
  557. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_issn.yml +393 -0
  558. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles.yml +265 -0
  559. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +860 -0
  560. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/not_found_error.yml +209 -0
  561. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/peer_review.yml +287 -0
  562. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content.yml +326 -0
  563. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content_copernicus.yml +297 -0
  564. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/report_osti.yml +315 -0
  565. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/vor_with_url.yml +451 -0
  566. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book.yml +816 -0
  567. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +324 -0
  568. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_raw/journal_article.yml +110 -0
  569. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/dissertation.yml +152 -0
  570. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/funding_references.yml +175 -0
  571. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/subject_scheme.yml +328 -0
  572. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date/publication_date.yml +221 -0
  573. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_from_date_parts/date.yml +221 -0
  574. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_from_date_parts/year-month.yml +221 -0
  575. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_from_date_parts/year.yml +221 -0
  576. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_from_parts/date.yml +221 -0
  577. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_from_parts/year-month.yml +221 -0
  578. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_from_parts/year.yml +221 -0
  579. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_parts/date.yml +221 -0
  580. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_parts/year-month.yml +221 -0
  581. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_date_parts/year.yml +221 -0
  582. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/future.yml +221 -0
  583. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/invalid.yml +221 -0
  584. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/nil.yml +221 -0
  585. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/past.yml +221 -0
  586. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/present.yml +221 -0
  587. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml +133 -0
  588. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +153 -0
  589. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/name_with_affiliation_crossref.yml +247 -0
  590. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/only_familyName_and_givenName.yml +467 -0
  591. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting.yml +530 -0
  592. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +530 -0
  593. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +534 -0
  594. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/harvard_dataverse.yml +1838 -0
  595. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/pangaea.yml +467 -0
  596. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/upstream_blog.yml +885 -0
  597. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/zenodo.yml +583 -0
  598. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_series_information/only_title.yml +221 -0
  599. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_series_information/title_and_pages.yml +221 -0
  600. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_series_information/title_volume_and_pages.yml +221 -0
  601. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_series_information/title_volume_issue_and_pages.yml +221 -0
  602. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/github/github_as_cff_url.yml +221 -0
  603. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/github/github_as_codemeta_url.yml +221 -0
  604. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/github/github_from_url.yml +221 -0
  605. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/github/github_from_url_cff_file.yml +221 -0
  606. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/github/github_from_url_file.yml +221 -0
  607. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +55 -0
  608. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml +55 -0
  609. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml +221 -0
  610. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_cc_url/not_found.yml +221 -0
  611. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_cc_url/with_trailing_slash.yml +221 -0
  612. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_cc_url/with_trailing_slash_and_to_https.yml +221 -0
  613. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/doi.yml +221 -0
  614. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/doi_as_url.yml +221 -0
  615. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/filename.yml +221 -0
  616. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/ftp.yml +221 -0
  617. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/invalid_url.yml +221 -0
  618. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/sandbox_via_options.yml +221 -0
  619. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/sandbox_via_url.yml +221 -0
  620. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/string.yml +221 -0
  621. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/url.yml +221 -0
  622. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_id/url_with_utf-8.yml +221 -0
  623. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_issn/from_array.yml +221 -0
  624. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_issn/from_empty_array.yml +221 -0
  625. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_issn/from_hash.yml +221 -0
  626. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_issn/from_string.yml +221 -0
  627. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_url/uri.yml +221 -0
  628. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_url/with_trailing_slash.yml +221 -0
  629. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_url/with_trailing_slash_and_to_https.yml +221 -0
  630. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/array.yml +221 -0
  631. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/array_of_strings.yml +221 -0
  632. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/first.yml +221 -0
  633. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/hash.yml +221 -0
  634. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/hash_with_array_value.yml +221 -0
  635. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/nil.yml +221 -0
  636. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/parse_attributes/string.yml +221 -0
  637. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/random_doi/decode_anothe_doi.yml +221 -0
  638. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/random_doi/decode_doi.yml +221 -0
  639. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/random_doi/encode_doi.yml +221 -0
  640. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/sanitize/onlies_keep_specific_tags.yml +221 -0
  641. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/sanitize/removes_a_tags.yml +221 -0
  642. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/spdx/hsh_to_spdx_id.yml +221 -0
  643. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/spdx/hsh_to_spdx_not_found.yml +221 -0
  644. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/spdx/hsh_to_spdx_url.yml +221 -0
  645. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/spdx/name_to_spdx_exists.yml +221 -0
  646. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/spdx/name_to_spdx_id.yml +221 -0
  647. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/to_schema_org/with_id.yml +221 -0
  648. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/to_schema_org_identifiers/with_identifiers.yml +221 -0
  649. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid.yml +221 -0
  650. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_https.yml +221 -0
  651. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_id.yml +221 -0
  652. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_sandbox.yml +221 -0
  653. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_sandbox_https.yml +221 -0
  654. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_with_spaces.yml +221 -0
  655. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_wrong_id.yml +221 -0
  656. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid/validate_orcid_www.yml +221 -0
  657. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid_scheme/validate_orcid_scheme.yml +221 -0
  658. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid_scheme/validate_orcid_scheme_https.yml +221 -0
  659. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid_scheme/validate_orcid_scheme_trailing_slash.yml +221 -0
  660. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_orcid_scheme/validate_orcid_scheme_www.yml +221 -0
  661. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_url/DOI.yml +221 -0
  662. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_url/ISSN.yml +221 -0
  663. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_url/URL.yml +221 -0
  664. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/validate_url/string.yml +221 -0
  665. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/BlogPosting.yml +81 -0
  666. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/Dataset.yml +120 -0
  667. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +186 -0
  668. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/climate_data.yml +74 -0
  669. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/from_schema_org.yml +530 -0
  670. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +149 -0
  671. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/maremma.yml +86 -0
  672. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/text.yml +100 -0
  673. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_data_citation.yml +247 -0
  674. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_pages.yml +228 -0
  675. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +143 -0
  676. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +150 -0
  677. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +93 -0
  678. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/ruby-cff.yml +154 -0
  679. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Dataset.yml +120 -0
  680. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article.yml +247 -0
  681. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +299 -0
  682. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Missing_author.yml +199 -0
  683. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +75 -0
  684. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml +86 -0
  685. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +76 -0
  686. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +76 -0
  687. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +541 -0
  688. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +55 -0
  689. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +85 -0
  690. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/posted_content.yml +283 -0
  691. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_another_science_blog.yml +123 -0
  692. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_front_matter.yml +477 -0
  693. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_upstream_blog.yml +1025 -0
  694. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Another_dataset.yml +110 -0
  695. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting.yml +81 -0
  696. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting_schema_org.yml +530 -0
  697. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Dataset.yml +120 -0
  698. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/container_title.yml +153 -0
  699. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/interactive_resource_without_dates.yml +75 -0
  700. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/journal_article.yml +247 -0
  701. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/keywords_subject_scheme.yml +149 -0
  702. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/maremma.yml +86 -0
  703. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/missing_creator.yml +199 -0
  704. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/multiple_abstracts.yml +101 -0
  705. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/organization_author.yml +314 -0
  706. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software.yml +90 -0
  707. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software_w/version.yml +86 -0
  708. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_only_first_page.yml +333 -0
  709. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_pages.yml +228 -0
  710. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/climate_data.yml +74 -0
  711. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/maremma.yml +86 -0
  712. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/text.yml +100 -0
  713. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_data_citation.yml +247 -0
  714. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_pages.yml +228 -0
  715. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/dissertation.yml +218 -0
  716. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/from_schema_org.yml +530 -0
  717. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/journal_article.yml +407 -0
  718. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/maremma.yml +86 -0
  719. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/with_ORCID_ID.yml +228 -0
  720. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/with_data_citation.yml +247 -0
  721. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +120 -0
  722. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +106 -0
  723. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/book_chapter.yml +163 -0
  724. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/from_schema_org.yml +530 -0
  725. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/interactive_resource_without_dates.yml +75 -0
  726. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/maremma.yml +86 -0
  727. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_ORCID_ID.yml +228 -0
  728. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_data_citation.yml +247 -0
  729. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_editor.yml +355 -0
  730. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_rdf_xml/BlogPosting.yml +81 -0
  731. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_rdf_xml/BlogPosting_schema_org.yml +530 -0
  732. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_rdf_xml/journal_article.yml +247 -0
  733. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_rdf_xml/maremma.yml +86 -0
  734. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_rdf_xml/with_pages.yml +228 -0
  735. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/BlogPosting.yml +81 -0
  736. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +530 -0
  737. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/Dataset.yml +120 -0
  738. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/alternate_name.yml +138 -0
  739. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/journal_article.yml +115 -0
  740. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +149 -0
  741. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/maremma.yml +86 -0
  742. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/with_pages.yml +112 -0
  743. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Another_Schema_org_JSON.yml +120 -0
  744. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Funding.yml +192 -0
  745. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +150 -0
  746. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +98 -0
  747. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +160 -0
  748. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +153 -0
  749. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +131 -0
  750. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/data_catalog.yml +136 -0
  751. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/geo_location_box.yml +181 -0
  752. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +127 -0
  753. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/journal_article.yml +247 -0
  754. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +86 -0
  755. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/series_information.yml +174 -0
  756. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/subject_scheme.yml +199 -0
  757. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +201 -0
  758. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_turtle/BlogPosting.yml +81 -0
  759. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +530 -0
  760. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_turtle/Dataset.yml +120 -0
  761. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_turtle/journal_article.yml +247 -0
  762. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_turtle/with_pages.yml +228 -0
  763. data/spec/fixtures/vivli.xml +17 -0
  764. data/spec/metadata_spec.rb +147 -0
  765. data/spec/readers/bibtex_reader_spec.rb +58 -0
  766. data/spec/readers/cff_reader_spec.rb +148 -0
  767. data/spec/readers/codemeta_reader_spec.rb +116 -0
  768. data/spec/readers/crossref_reader_spec.rb +919 -0
  769. data/spec/readers/crossref_xml_reader_spec.rb +948 -0
  770. data/spec/readers/csl_reader_spec.rb +61 -0
  771. data/spec/readers/datacite_reader_spec.rb +156 -0
  772. data/spec/readers/npm_reader_spec.rb +69 -0
  773. data/spec/readers/ris_reader_spec.rb +70 -0
  774. data/spec/readers/schema_org_reader_spec.rb +416 -0
  775. data/spec/schema_utils_spec.rb +16 -0
  776. data/spec/spec_helper.rb +96 -0
  777. data/spec/utils_spec.rb +631 -0
  778. data/spec/writers/bibtex_writer_spec.rb +160 -0
  779. data/spec/writers/cff_writer_spec.rb +118 -0
  780. data/spec/writers/citation_writer_spec.rb +51 -0
  781. data/spec/writers/codemeta_writer_spec.rb +47 -0
  782. data/spec/writers/crossref_xml_writer_spec.rb +173 -0
  783. data/spec/writers/csl_writer_spec.rb +291 -0
  784. data/spec/writers/csv_writer_spec.rb +82 -0
  785. data/spec/writers/datacite_writer_spec.rb +150 -0
  786. data/spec/writers/jats_writer_spec.rb +210 -0
  787. data/spec/writers/rdf_xml_writer_spec.rb +91 -0
  788. data/spec/writers/ris_writer_spec.rb +206 -0
  789. data/spec/writers/schema_org_writer_spec.rb +301 -0
  790. data/spec/writers/turtle_writer_spec.rb +85 -0
  791. metadata +1514 -0
@@ -0,0 +1,14 @@
1
+ @article{Sankar_2014,
2
+ doi = {10.7554/elife.01567},
3
+ url = {http://elifesciences.org/lookup/doi/10.7554/eLife.01567},
4
+ year = 2014,
5
+ month = {feb},
6
+ publisher = {{eLife} Sciences Organisation, Ltd.},
7
+ volume = {3},
8
+ author = {Martial Sankar and Kaisa Nieminen and Laura Ragni and Ioannis Xenarios and Christian S Hardtke},
9
+ title = {Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth},
10
+ abstract = {Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.},
11
+ journal = {eLife},
12
+ issn = {2050-084X},
13
+ copyright = {http://creativecommons.org/licenses/by/3.0/}
14
+ }
@@ -0,0 +1,572 @@
1
+ {
2
+ "indexed": {
3
+ "date-parts": [[2022, 9, 8]],
4
+ "date-time": "2022-09-08T23:27:28Z",
5
+ "timestamp": 1662679648109
6
+ },
7
+ "reference-count": 27,
8
+ "publisher": "eLife Sciences Publications, Ltd",
9
+ "license": [
10
+ {
11
+ "start": {
12
+ "date-parts": [[2014, 2, 11]],
13
+ "date-time": "2014-02-11T00:00:00Z",
14
+ "timestamp": 1392076800000
15
+ },
16
+ "content-version": "vor",
17
+ "delay-in-days": 0,
18
+ "URL": "http://creativecommons.org/licenses/by/3.0/"
19
+ },
20
+ {
21
+ "start": {
22
+ "date-parts": [[2014, 2, 11]],
23
+ "date-time": "2014-02-11T00:00:00Z",
24
+ "timestamp": 1392076800000
25
+ },
26
+ "content-version": "am",
27
+ "delay-in-days": 0,
28
+ "URL": "http://creativecommons.org/licenses/by/3.0/"
29
+ },
30
+ {
31
+ "start": {
32
+ "date-parts": [[2014, 2, 11]],
33
+ "date-time": "2014-02-11T00:00:00Z",
34
+ "timestamp": 1392076800000
35
+ },
36
+ "content-version": "tdm",
37
+ "delay-in-days": 0,
38
+ "URL": "http://creativecommons.org/licenses/by/3.0/"
39
+ },
40
+ {
41
+ "start": {
42
+ "date-parts": [[2014, 2, 11]],
43
+ "date-time": "2014-02-11T00:00:00Z",
44
+ "timestamp": 1392076800000
45
+ },
46
+ "content-version": "vor",
47
+ "delay-in-days": 0,
48
+ "URL": "http://creativecommons.org/licenses/by/3.0/"
49
+ },
50
+ {
51
+ "start": {
52
+ "date-parts": [[2014, 2, 11]],
53
+ "date-time": "2014-02-11T00:00:00Z",
54
+ "timestamp": 1392076800000
55
+ },
56
+ "content-version": "am",
57
+ "delay-in-days": 0,
58
+ "URL": "http://creativecommons.org/licenses/by/3.0/"
59
+ },
60
+ {
61
+ "start": {
62
+ "date-parts": [[2014, 2, 11]],
63
+ "date-time": "2014-02-11T00:00:00Z",
64
+ "timestamp": 1392076800000
65
+ },
66
+ "content-version": "tdm",
67
+ "delay-in-days": 0,
68
+ "URL": "http://creativecommons.org/licenses/by/3.0/"
69
+ }
70
+ ],
71
+ "funder": [
72
+ {
73
+ "name": "SystemsX"
74
+ },
75
+ {
76
+ "name": "EMBO longterm post-doctoral fellowships"
77
+ },
78
+ {
79
+ "name": "Marie Heim-Voegtlin"
80
+ },
81
+ {
82
+ "DOI": "10.13039/501100006390",
83
+ "name": "University of Lausanne",
84
+ "doi-asserted-by": "crossref"
85
+ },
86
+ {
87
+ "name": "SystemsX"
88
+ },
89
+ {
90
+ "DOI": "10.13039/501100003043",
91
+ "name": "EMBO",
92
+ "doi-asserted-by": "publisher"
93
+ },
94
+ {
95
+ "DOI": "10.13039/501100001711",
96
+ "name": "Swiss National Science Foundation",
97
+ "doi-asserted-by": "publisher"
98
+ },
99
+ {
100
+ "DOI": "10.13039/501100006390",
101
+ "name": "University of Lausanne",
102
+ "doi-asserted-by": "crossref"
103
+ }
104
+ ],
105
+ "content-domain": {
106
+ "domain": ["www.elifesciences.org"],
107
+ "crossmark-restriction": false
108
+ },
109
+ "short-container-title": [],
110
+ "abstract": "<jats:p>Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale. For instance, secondary growth of Arabidopsis hypocotyls creates a radial pattern of highly specialized tissues that comprises several thousand cells starting from a few dozen. This dynamic process is difficult to follow because of its scale and because it can only be investigated invasively, precluding comprehensive understanding of the cell proliferation, differentiation, and patterning events involved. To overcome such limitation, we established an automated quantitative histology approach. We acquired hypocotyl cross-sections from tiled high-resolution images and extracted their information content using custom high-throughput image processing and segmentation. Coupled with automated cell type recognition through machine learning, we could establish a cellular resolution atlas that reveals vascular morphodynamics during secondary growth, for example equidistant phloem pole formation.</jats:p>",
111
+ "DOI": "10.7554/elife.01567",
112
+ "type": "journal-article",
113
+ "created": {
114
+ "date-parts": [[2014, 2, 11]],
115
+ "date-time": "2014-02-11T16:29:04Z",
116
+ "timestamp": 1392136144000
117
+ },
118
+ "source": "Crossref",
119
+ "is-referenced-by-count": 26,
120
+ "title": [
121
+ "Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth"
122
+ ],
123
+ "prefix": "10.7554",
124
+ "volume": "3",
125
+ "author": [
126
+ {
127
+ "given": "Martial",
128
+ "family": "Sankar",
129
+ "sequence": "first",
130
+ "affiliation": [
131
+ {
132
+ "name": "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"
133
+ }
134
+ ]
135
+ },
136
+ {
137
+ "given": "Kaisa",
138
+ "family": "Nieminen",
139
+ "sequence": "additional",
140
+ "affiliation": [
141
+ {
142
+ "name": "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"
143
+ }
144
+ ]
145
+ },
146
+ {
147
+ "given": "Laura",
148
+ "family": "Ragni",
149
+ "sequence": "additional",
150
+ "affiliation": [
151
+ {
152
+ "name": "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"
153
+ }
154
+ ]
155
+ },
156
+ {
157
+ "given": "Ioannis",
158
+ "family": "Xenarios",
159
+ "sequence": "additional",
160
+ "affiliation": [
161
+ {
162
+ "name": "Vital-IT, Swiss Institute of Bioinformatics, Lausanne, Switzerland"
163
+ }
164
+ ]
165
+ },
166
+ {
167
+ "given": "Christian S",
168
+ "family": "Hardtke",
169
+ "sequence": "additional",
170
+ "affiliation": [
171
+ {
172
+ "name": "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"
173
+ }
174
+ ]
175
+ }
176
+ ],
177
+ "member": "4374",
178
+ "published-online": {
179
+ "date-parts": [[2014, 2, 11]]
180
+ },
181
+ "reference": [
182
+ {
183
+ "key": "bib1",
184
+ "doi-asserted-by": "publisher",
185
+ "first-page": "181",
186
+ "DOI": "10.1038/nature02100",
187
+ "article-title": "APL regulates vascular tissue identity in Arabidopsis",
188
+ "volume": "426",
189
+ "author": "Bonke",
190
+ "year": "2003",
191
+ "journal-title": "Nature"
192
+ },
193
+ {
194
+ "key": "bib2",
195
+ "doi-asserted-by": "publisher",
196
+ "first-page": "413",
197
+ "DOI": "10.1534/genetics.109.104976",
198
+ "article-title": "In the beginning was the worm",
199
+ "volume": "182",
200
+ "author": "Brenner",
201
+ "year": "2009",
202
+ "journal-title": "Genetics"
203
+ },
204
+ {
205
+ "key": "bib3",
206
+ "doi-asserted-by": "publisher",
207
+ "first-page": "594",
208
+ "DOI": "10.1034/j.1399-3054.2002.1140413.x",
209
+ "article-title": "Secondary xylem development in Arabidopsis: a model for wood formation",
210
+ "volume": "114",
211
+ "author": "Chaffey",
212
+ "year": "2002",
213
+ "journal-title": "Physiologia Plantarum"
214
+ },
215
+ {
216
+ "key": "bib4",
217
+ "doi-asserted-by": "publisher",
218
+ "first-page": "2119",
219
+ "DOI": "10.1162/089976601750399335",
220
+ "article-title": "Training nu-support vector classifiers: theory and algorithms",
221
+ "volume": "13",
222
+ "author": "Chang",
223
+ "year": "2001",
224
+ "journal-title": "Neural computation"
225
+ },
226
+ {
227
+ "key": "bib5",
228
+ "doi-asserted-by": "crossref",
229
+ "first-page": "273",
230
+ "DOI": "10.1007/BF00994018",
231
+ "article-title": "Support-vector Networks",
232
+ "volume": "20",
233
+ "author": "Cortes",
234
+ "year": "1995",
235
+ "journal-title": "Machine Learning"
236
+ },
237
+ {
238
+ "key": "bib6",
239
+ "doi-asserted-by": "crossref",
240
+ "first-page": "71",
241
+ "DOI": "10.1242/dev.119.1.71",
242
+ "article-title": "Cellular organisation of the Arabidopsis thaliana root",
243
+ "volume": "119",
244
+ "author": "Dolan",
245
+ "year": "1993",
246
+ "journal-title": "Development"
247
+ },
248
+ {
249
+ "key": "bib7",
250
+ "doi-asserted-by": "publisher",
251
+ "first-page": "1097",
252
+ "DOI": "10.1016/j.semcdb.2009.09.009",
253
+ "article-title": "Stem cell function during plant vascular development",
254
+ "volume": "20",
255
+ "author": "Elo",
256
+ "year": "2009",
257
+ "journal-title": "Seminars in Cell & Developmental Biology"
258
+ },
259
+ {
260
+ "key": "bib8",
261
+ "doi-asserted-by": "publisher",
262
+ "first-page": "2224",
263
+ "DOI": "10.1242/dev.091314",
264
+ "article-title": "WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation",
265
+ "volume": "140",
266
+ "author": "Etchells",
267
+ "year": "2013",
268
+ "journal-title": "Development"
269
+ },
270
+ {
271
+ "key": "bib9",
272
+ "doi-asserted-by": "publisher",
273
+ "first-page": "e1002997",
274
+ "DOI": "10.1371/journal.pgen.1002997",
275
+ "article-title": "Plant vascular cell division is maintained by an interaction between PXY and ethylene signalling",
276
+ "volume": "8",
277
+ "author": "Etchells",
278
+ "year": "2012",
279
+ "journal-title": "PLOS Genetics"
280
+ },
281
+ {
282
+ "key": "bib10",
283
+ "doi-asserted-by": "publisher",
284
+ "first-page": "370",
285
+ "DOI": "10.1038/msb.2010.25",
286
+ "article-title": "Clustering phenotype populations by genome-wide RNAi and multiparametric imaging",
287
+ "volume": "6",
288
+ "author": "Fuchs",
289
+ "year": "2010",
290
+ "journal-title": "Molecular Systems Biology"
291
+ },
292
+ {
293
+ "key": "bib11",
294
+ "doi-asserted-by": "publisher",
295
+ "first-page": "60",
296
+ "DOI": "10.1016/j.biosystems.2012.07.004",
297
+ "article-title": "BaSAR-A tool in R for frequency detection",
298
+ "volume": "110",
299
+ "author": "Granqvist",
300
+ "year": "2012",
301
+ "journal-title": "Bio Systems"
302
+ },
303
+ {
304
+ "key": "bib12",
305
+ "doi-asserted-by": "publisher",
306
+ "first-page": "55",
307
+ "DOI": "10.1016/j.pbi.2005.11.013",
308
+ "article-title": "Developmental mechanisms regulating secondary growth in woody plants",
309
+ "volume": "9",
310
+ "author": "Groover",
311
+ "year": "2006",
312
+ "journal-title": "Current Opinion in Plant Biology"
313
+ },
314
+ {
315
+ "key": "bib13",
316
+ "doi-asserted-by": "publisher",
317
+ "first-page": "2618",
318
+ "DOI": "10.1105/tpc.110.076083",
319
+ "article-title": "TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis",
320
+ "volume": "22",
321
+ "author": "Hirakawa",
322
+ "year": "2010",
323
+ "journal-title": "Plant Cell"
324
+ },
325
+ {
326
+ "key": "bib14",
327
+ "doi-asserted-by": "publisher",
328
+ "first-page": "15208",
329
+ "DOI": "10.1073/pnas.0808444105",
330
+ "article-title": "Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system",
331
+ "volume": "105",
332
+ "author": "Hirakawa",
333
+ "year": "2008",
334
+ "journal-title": "Proceedings of the National Academy of Sciences of the United States of America"
335
+ },
336
+ {
337
+ "key": "bib15",
338
+ "doi-asserted-by": "publisher",
339
+ "first-page": "263",
340
+ "DOI": "10.1016/0092-8674(89)90900-8",
341
+ "article-title": "Arabidopsis, a useful weed",
342
+ "volume": "56",
343
+ "author": "Meyerowitz",
344
+ "year": "1989",
345
+ "journal-title": "Cell"
346
+ },
347
+ {
348
+ "key": "bib16",
349
+ "doi-asserted-by": "publisher",
350
+ "first-page": "1482",
351
+ "DOI": "10.1126/science.1066609",
352
+ "article-title": "Plants compared to animals: the broadest comparative study of development",
353
+ "volume": "295",
354
+ "author": "Meyerowitz",
355
+ "year": "2002",
356
+ "journal-title": "Science"
357
+ },
358
+ {
359
+ "key": "bib17",
360
+ "doi-asserted-by": "publisher",
361
+ "first-page": "653",
362
+ "DOI": "10.1104/pp.104.040212",
363
+ "article-title": "A weed for wood? Arabidopsis as a genetic model for xylem development",
364
+ "volume": "135",
365
+ "author": "Nieminen",
366
+ "year": "2004",
367
+ "journal-title": "Plant Physiol"
368
+ },
369
+ {
370
+ "key": "bib18",
371
+ "doi-asserted-by": "publisher",
372
+ "first-page": "1565",
373
+ "DOI": "10.1038/nbt1206-1565",
374
+ "article-title": "What is a support vector machine?",
375
+ "volume": "24",
376
+ "author": "Noble",
377
+ "year": "2006",
378
+ "journal-title": "Nature Biotechnology"
379
+ },
380
+ {
381
+ "key": "bib19",
382
+ "doi-asserted-by": "publisher",
383
+ "first-page": "1516",
384
+ "DOI": "10.1073/pnas.77.3.1516",
385
+ "article-title": "Classification of cultured mammalian cells by shape analysis and pattern recognition",
386
+ "volume": "77",
387
+ "author": "Olson",
388
+ "year": "1980",
389
+ "journal-title": "Proceedings of the National Academy of Sciences of the United States of America"
390
+ },
391
+ {
392
+ "key": "bib20",
393
+ "doi-asserted-by": "publisher",
394
+ "first-page": "979",
395
+ "DOI": "10.1093/bioinformatics/btq046",
396
+ "article-title": "EBImage–an R package for image processing with applications to cellular phenotypes",
397
+ "volume": "26",
398
+ "author": "Pau",
399
+ "year": "2010",
400
+ "journal-title": "Bioinformatics"
401
+ },
402
+ {
403
+ "key": "bib21",
404
+ "doi-asserted-by": "publisher",
405
+ "first-page": "1322",
406
+ "DOI": "10.1105/tpc.111.084020",
407
+ "article-title": "Mobile gibberellin directly stimulates Arabidopsis hypocotyl xylem expansion",
408
+ "volume": "23",
409
+ "author": "Ragni",
410
+ "year": "2011",
411
+ "journal-title": "Plant Cell"
412
+ },
413
+ {
414
+ "key": "bib22",
415
+ "doi-asserted-by": "publisher",
416
+ "article-title": "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth",
417
+ "author": "Sankar",
418
+ "year": "2014",
419
+ "journal-title": "Dryad Digital Repository",
420
+ "DOI": "10.5061/dryad.b835k"
421
+ },
422
+ {
423
+ "key": "bib23",
424
+ "doi-asserted-by": "publisher",
425
+ "first-page": "458",
426
+ "DOI": "10.1016/j.cub.2008.02.070",
427
+ "article-title": "Flowering as a condition for xylem expansion in Arabidopsis hypocotyl and root",
428
+ "volume": "18",
429
+ "author": "Sibout",
430
+ "year": "2008",
431
+ "journal-title": "Current Biology"
432
+ },
433
+ {
434
+ "key": "bib24",
435
+ "doi-asserted-by": "publisher",
436
+ "first-page": "577",
437
+ "DOI": "10.1111/j.1469-8137.2010.03236.x",
438
+ "article-title": "Evolution of development of vascular cambia and secondary growth",
439
+ "volume": "186",
440
+ "author": "Spicer",
441
+ "year": "2010",
442
+ "journal-title": "The New Phytologist"
443
+ },
444
+ {
445
+ "key": "bib25",
446
+ "doi-asserted-by": "publisher",
447
+ "first-page": "659",
448
+ "DOI": "10.1007/s00138-011-0345-9",
449
+ "article-title": "Cell morphology classification and clutter mitigation in phase-contrast microscopy images using machine learning",
450
+ "volume": "23",
451
+ "author": "Theriault",
452
+ "year": "2012",
453
+ "journal-title": "Machine Vision and Applications"
454
+ },
455
+ {
456
+ "key": "bib26",
457
+ "doi-asserted-by": "publisher",
458
+ "first-page": "439",
459
+ "DOI": "10.1016/j.cell.2012.02.048",
460
+ "article-title": "Mechanical stress acts via katanin to amplify differences in growth rate between adjacent cells in Arabidopsis",
461
+ "volume": "149",
462
+ "author": "Uyttewaal",
463
+ "year": "2012",
464
+ "journal-title": "Cell"
465
+ },
466
+ {
467
+ "key": "bib27",
468
+ "doi-asserted-by": "publisher",
469
+ "first-page": "860",
470
+ "DOI": "10.1038/ncb2764",
471
+ "article-title": "A screen for morphological complexity identifies regulators of switch-like transitions between discrete cell shapes",
472
+ "volume": "15",
473
+ "author": "Yin",
474
+ "year": "2013",
475
+ "journal-title": "Nature Cell Biology"
476
+ }
477
+ ],
478
+ "container-title": ["eLife"],
479
+ "original-title": [],
480
+ "language": "en",
481
+ "link": [
482
+ {
483
+ "URL": "https://cdn.elifesciences.org/articles/01567/elife-01567-v1.pdf",
484
+ "content-type": "application/pdf",
485
+ "content-version": "vor",
486
+ "intended-application": "text-mining"
487
+ },
488
+ {
489
+ "URL": "https://cdn.elifesciences.org/articles/01567/elife-01567-v1.xml",
490
+ "content-type": "application/xml",
491
+ "content-version": "vor",
492
+ "intended-application": "text-mining"
493
+ }
494
+ ],
495
+ "deposited": {
496
+ "date-parts": [[2022, 3, 26]],
497
+ "date-time": "2022-03-26T09:21:50Z",
498
+ "timestamp": 1648286510000
499
+ },
500
+ "score": 1,
501
+ "resource": {
502
+ "primary": {
503
+ "URL": "https://elifesciences.org/articles/01567"
504
+ }
505
+ },
506
+ "subtitle": [],
507
+ "short-title": [],
508
+ "issued": {
509
+ "date-parts": [[2014, 2, 11]]
510
+ },
511
+ "references-count": 27,
512
+ "alternative-id": ["10.7554/eLife.01567"],
513
+ "URL": "http://dx.doi.org/10.7554/elife.01567",
514
+ "archive": ["CLOCKSS"],
515
+ "relation": {
516
+ "is-supplemented-by": [
517
+ {
518
+ "id-type": "doi",
519
+ "id": "10.5061/dryad.b835k",
520
+ "asserted-by": "subject"
521
+ }
522
+ ]
523
+ },
524
+ "ISSN": ["2050-084X"],
525
+ "issn-type": [
526
+ {
527
+ "value": "2050-084X",
528
+ "type": "electronic"
529
+ }
530
+ ],
531
+ "subject": [
532
+ "General Immunology and Microbiology",
533
+ "General Biochemistry, Genetics and Molecular Biology",
534
+ "General Medicine",
535
+ "General Neuroscience"
536
+ ],
537
+ "published": {
538
+ "date-parts": [[2014, 2, 11]]
539
+ },
540
+ "assertion": [
541
+ {
542
+ "value": "2013-09-20",
543
+ "order": 0,
544
+ "name": "received",
545
+ "label": "Received",
546
+ "group": {
547
+ "name": "publication_history",
548
+ "label": "Publication History"
549
+ }
550
+ },
551
+ {
552
+ "value": "2013-12-24",
553
+ "order": 1,
554
+ "name": "accepted",
555
+ "label": "Accepted",
556
+ "group": {
557
+ "name": "publication_history",
558
+ "label": "Publication History"
559
+ }
560
+ },
561
+ {
562
+ "value": "2014-02-11",
563
+ "order": 2,
564
+ "name": "published",
565
+ "label": "Published",
566
+ "group": {
567
+ "name": "publication_history",
568
+ "label": "Publication History"
569
+ }
570
+ }
571
+ ]
572
+ }
@@ -0,0 +1,15 @@
1
+ TY - JOUR
2
+ T1 - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth
3
+ T2 - eLife
4
+ SN - 2050084X
5
+ AU - Sankar, Martial
6
+ AU - Nieminen, Kaisa
7
+ AU - Ragni, Laura
8
+ AU - Xenarios, Ioannis
9
+ AU - Hardtke, Christian S
10
+ DO - 10.7554/eLife.01567
11
+ UR - http://elifesciences.org/lookup/doi/10.7554/eLife.01567
12
+ AB - Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.
13
+ PY - 2014
14
+ VL - 3
15
+ ER -