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+        Medicine"],"published-print":{"date-parts":[[2012]]},"abstract":"<jats:p><jats:italic>Objective<\/jats:italic>.
+        To find a statistically significant separation point for the QuantiFERON Gold
+        In-Tube (QFT) interferon gamma release assay that could define an optimal
+        \u201cretesting zone\u201d for use in serially tested low-risk populations
+        who have test \u201creversions\u201d from initially positive to subsequently
+        negative results.<jats:italic>Method<\/jats:italic>. Using receiver operating
+        characteristic analysis (ROC) to analyze retrospective data collected from
+        3 major hospitals, we searched for predictors of reversion until statistically
+        significant separation points were revealed. A confirmatory regression analysis
+        was performed on an additional sample.<jats:italic>Results<\/jats:italic>.
+        In 575 initially positive US healthcare workers (HCWs), 300 (52.2%) had reversions,
+        while 275 (47.8%) had two sequential positive tests. The most statistically
+        significant (Kappa\u2009=\u20090.48, chi-square\u2009=\u2009131.0,<mml:math
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+        separation point identified by the ROC for predicting reversion was the tuberculosis
+        antigen minus-nil (TBag-nil) value at 1.11 International Units per milliliter
+        (IU\/mL). The second separation point was found at TBag-nil at 0.72\u2009IU\/mL
+        (Kappa\u2009=\u20090.16, chi-square\u2009=\u20098.2,<mml:math xmlns:mml=\"http:\/\/www.w3.org\/1998\/Math\/MathML\"
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+        The model was validated by the regression analysis of 287\u2009HCWs.<jats:italic>Conclusion<\/jats:italic>.
+        Reversion likelihood increases as the TBag-nil approaches the manufacturer''s
+        cut-point of 0.35\u2009IU\/mL. The most statistically significant separation
+        point between those who test repeatedly positive and those who revert is 1.11\u2009IU\/mL.
+        Clinicians should retest low-risk individuals with initial QFT results\u2009&lt;\u20091.11\u2009IU\/mL.<\/jats:p>","DOI":"10.1155\/2012\/291294","type":"journal-article","created":{"date-parts":[[2012,12,30]],"date-time":"2012-12-30T21:05:01Z","timestamp":1356901501000},"page":"1-7","source":"Crossref","is-referenced-by-count":30,"title":["Delineating
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+        [
+          {
+            "DOI": "10.1155",
+            "RA": "Crossref"
+          }
+        ]
+  recorded_at: Sun, 19 Mar 2023 17:36:12 GMT
+recorded_with: VCR 6.1.0

data/spec/fixtures/vivli.xml

@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+  xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
+  <identifier identifierType="DOI">10.5072/00013641</identifier>
+  <creators>
+    <creator>
+      <creatorName>Vivli</creatorName>
+    </creator>
+  </creators>
+  <titles>
+    <title>A Comparative Pilot Study of the Efficacy of Three Portable Oxygen Concentrators During a 6-Minute Walk Test in Patients With Chronic Lung Disease</title>
+  </titles>
+  <publisher>Vivli</publisher>
+  <publicationYear>2018</publicationYear>
+  <dates/>
+  <version/>
+</resource>

data/spec/metadata_spec.rb

@@ -0,0 +1,147 @@
+# frozen_string_literal: true
+
+require 'spec_helper'
+
+describe Commonmeta::Metadata, vcr: true do
+  let(:subject) do
+    described_class.new
+  end
+
+  context 'handle input' do
+    it 'unknown DOI prefix' do
+      input = 'http://doi.org/10.0137/14802'
+      subject = described_class.new(input: input)
+      expect(subject.errors).to eq(['root is missing required keys: id, type, url, creators, titles, publisher, date'])
+      expect(subject.valid?).to be false
+    end
+
+    it 'DOI RA not Crossref or DataCite' do
+      input = 'http://doi.org/10.3980/j.issn.2222-3959.2015.03.07'
+      subject = described_class.new(input: input)
+      expect(subject.errors).to eq(['root is missing required keys: id, type, url, creators, titles, publisher, date'])
+      expect(subject.valid?).to be false
+    end
+  end
+
+  context 'find from format by ID' do
+    it 'crossref' do
+      id = 'https://doi.org/10.1371/journal.pone.0000030'
+      expect(subject.find_from_format(id: id)).to eq('crossref')
+    end
+
+    it 'crossref doi not url' do
+      id = '10.1371/journal.pone.0000030'
+      expect(subject.find_from_format(id: id)).to eq('crossref')
+    end
+
+    it 'datacite' do
+      id = 'https://doi.org/10.5438/4K3M-NYVG'
+      expect(subject.find_from_format(id: id)).to eq('datacite')
+    end
+
+    it 'datacite doi http' do
+      id = 'http://doi.org/10.5438/4K3M-NYVG'
+      expect(subject.find_from_format(id: id)).to eq('datacite')
+    end
+
+    it 'unknown DOI registration agency' do
+      id = 'http://doi.org/10.0137/14802'
+      expect(subject.find_from_format(id: id).nil?).to be(true)
+    end
+
+    it 'orcid' do
+      id = 'http://orcid.org/0000-0002-0159-2197'
+      expect(subject.find_from_format(id: id)).to eq('orcid')
+    end
+
+    it 'github' do
+      id = 'https://github.com/datacite/maremma/blob/master/codemeta.json'
+      expect(subject.find_from_format(id: id)).to eq('codemeta')
+    end
+
+    it 'schema_org' do
+      id = 'https://blog.datacite.org/eating-your-own-dog-food'
+      expect(subject.find_from_format(id: id)).to eq('schema_org')
+    end
+  end
+
+  context 'find from format from file' do
+    it 'bibtex' do
+      file = "#{fixture_path}crossref.bib"
+      string = File.read(file)
+      ext = File.extname(file)
+      expect(subject.find_from_format(string: string, ext: ext)).to eq('bibtex')
+    end
+
+    it 'ris' do
+      file = "#{fixture_path}crossref.ris"
+      string = File.read(file)
+      ext = File.extname(file)
+      expect(subject.find_from_format(string: string, ext: ext)).to eq('ris')
+    end
+  end
+
+  context 'find from format from string' do
+    it 'crossref_xml' do
+      file = "#{fixture_path}crossref.xml"
+      string = File.read(file)
+      expect(subject.find_from_format(string: string)).to eq('crossref_xml')
+    end
+
+    it 'crossref' do
+      file = "#{fixture_path}crossref.json"
+      string = File.read(file)
+      expect(subject.find_from_format(string: string)).to eq('crossref')
+    end
+
+    it 'datacite' do
+      file = "#{fixture_path}datacite.json"
+      string = File.read(file)
+      expect(subject.find_from_format(string: string)).to eq('datacite')
+    end
+
+    it 'schema_org' do
+      file = "#{fixture_path}schema_org.json"
+      string = File.read(file)
+      expect(subject.find_from_format(string: string)).to eq('schema_org')
+    end
+
+    it 'csl' do
+      file = "#{fixture_path}citeproc.json"
+      string = File.read(file)
+      expect(subject.find_from_format(string: string)).to eq('csl')
+    end
+
+    it 'codemeta' do
+      file = "#{fixture_path}codemeta.json"
+      string = File.read(file)
+      expect(subject.find_from_format(string: string)).to eq('codemeta')
+    end
+  end
+
+  context 'jsonlint' do
+    it 'valid' do
+      json = File.read("#{fixture_path}datacite_software.json")
+      response = subject.jsonlint(json)
+      expect(response.empty?).to be(true)
+    end
+
+    it 'nil' do
+      json = nil
+      response = subject.jsonlint(json)
+      expect(response).to eq(['No JSON provided'])
+    end
+
+    it 'missing_comma' do
+      json = File.read("#{fixture_path}datacite_software_missing_comma.json")
+      response = subject.jsonlint(json)
+      expect(response).to eq(['expected comma, not a string (after doi) at line 4, column 11 [parse.c:435]'])
+    end
+
+    it 'overlapping_keys' do
+      json = File.read("#{fixture_path}datacite_software_overlapping_keys.json")
+      response = subject.jsonlint(json)
+      expect(response).to eq(['The same key is defined more than once: id'])
+    end
+  end
+end

data/spec/readers/bibtex_reader_spec.rb

@@ -0,0 +1,58 @@
+# frozen_string_literal: true
+
+require 'spec_helper'
+
+describe Commonmeta::Metadata, vcr: true do
+  subject { described_class.new(input: input) }
+
+  let(:input) { "#{fixture_path}crossref.bib" }
+
+  context 'detect format' do
+    it 'extension' do
+      expect(subject.valid?).to be true
+    end
+
+    it 'string' do
+      described_class.new(input: File.read(input).strip)
+      expect(subject.valid?).to be true
+      expect(subject.id).to eq('https://doi.org/10.7554/elife.01567')
+    end
+  end
+
+  context 'get bibtex raw' do
+    it 'Crossref DOI' do
+      expect(subject.raw).to eq(File.read(input).strip)
+    end
+  end
+
+  context 'get bibtex metadata' do
+    it 'Crossref DOI' do
+      expect(subject.valid?).to be true
+      expect(subject.id).to eq('https://doi.org/10.7554/elife.01567')
+      expect(subject.type).to eq('JournalArticle')
+      expect(subject.url).to eq('http://elifesciences.org/lookup/doi/10.7554/eLife.01567')
+      expect(subject.creators.length).to eq(5)
+      expect(subject.creators.first).to eq('familyName' => 'Sankar', 'givenName' => 'Martial',
+                                           'type' => 'Person')
+      expect(subject.titles).to eq([{ 'title' => 'Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth' }])
+      expect(subject.descriptions.first['description']).to start_with('Among various advantages, their small size makes model organisms preferred subjects of investigation.')
+      expect(subject.license).to eq('id' => 'CC-BY-3.0', 'url' => 'https://creativecommons.org/licenses/by/3.0/legalcode')
+      expect(subject.date).to eq('published' => '2014')
+    end
+
+    it 'DOI does not exist' do
+      input = "#{fixture_path}pure.bib"
+      doi = '10.7554/elife.01567'
+      subject = described_class.new(input: input, doi: doi)
+      expect(subject.valid?).to be false
+      expect(subject.state).to eq('not_found')
+      expect(subject.id).to eq('https://doi.org/10.7554/elife.01567')
+      expect(subject.type).to eq('Dissertation')
+      expect(subject.creators).to eq([{ 'familyName' => 'Toparlar', 'givenName' => 'Y.',
+                                        'type' => 'Person' }])
+      expect(subject.titles).to eq([{ 'title' => 'A multiscale analysis of the urban heat island effect: from city averaged temperatures to the energy demand of individual buildings' }])
+      expect(subject.descriptions.first['description']).to start_with('Designing the climates of cities')
+      expect(subject.date).to eq('published' => '2018')
+    end
+  end
+end

data/spec/readers/cff_reader_spec.rb

@@ -0,0 +1,148 @@
+# frozen_string_literal: true
+
+require 'spec_helper'
+
+describe Commonmeta::Metadata, vcr: true do
+  subject { described_class.new(input: input) }
+
+  let(:input) { 'https://github.com/citation-file-format/ruby-cff/blob/main/CITATION.cff' }
+
+  context 'get cff metadata' do
+    it 'ruby-cff' do
+      # expect(subject.valid?).to be true
+      expect(subject.id).to eq('https://doi.org/10.5281/zenodo.1184077')
+      expect(subject.url).to eq('https://github.com/citation-file-format/ruby-cff')
+      expect(subject.type).to eq('Software')
+      expect(subject.creators).to eq([{ 'affiliation' => [{ 'name' => 'The University of Manchester, UK' }], 'familyName' => 'Haines', 'givenName' => 'Robert',
+                                        'id' => 'https://orcid.org/0000-0002-9538-7919',
+                                        'type' => 'Person' },
+                                      { 'name' => 'The Ruby Citation File Format Developers',
+                                        'type' => 'Organization' }])
+      expect(subject.titles).to eq([{ 'title' => 'Ruby CFF Library' }])
+      expect(subject.descriptions.first['description']).to start_with('This library provides a Ruby interface to manipulate Citation File Format files')
+      expect(subject.subjects).to eq([{ 'subject' => 'ruby' },
+                                      { 'subject' => 'credit' },
+                                      { 'subject' => 'software citation' },
+                                      { 'subject' => 'research software' },
+                                      { 'subject' => 'software sustainability' },
+                                      { 'subject' => 'metadata' },
+                                      { 'subject' => 'citation file format' },
+                                      { 'subject' => 'cff' }])
+      expect(subject.version).to eq('1.0.1')
+      expect(subject.date).to eq('published' => '2022-11-05')
+      expect(subject.publisher).to eq('name' => 'GitHub')
+      expect(subject.license).to eq('id' => 'Apache-2.0',
+                                    'url' => 'http://www.apache.org/licenses/LICENSE-2.0')
+      expect(subject.references).to eq([{ 'doi' => 'https://doi.org/10.5281/zenodo.1003149',
+                                          'key' => 'https://doi.org/10.5281/zenodo.1003149',
+                                          'publicationYear' => '2021' }])
+    end
+
+    it 'cff-converter-python' do
+      input = 'https://github.com/citation-file-format/cff-converter-python/blob/main/CITATION.cff'
+      subject = described_class.new(input: input)
+      expect(subject.id).to eq('https://doi.org/10.5281/zenodo.1162057')
+      expect(subject.url).to eq('https://github.com/citation-file-format/cff-converter-python')
+      expect(subject.type).to eq('Software')
+      expect(subject.creators).to eq([{ 'affiliation' => [{ 'name' => 'Netherlands eScience Center' }],
+                                        'familyName' => 'Spaaks',
+                                        'givenName' => 'Jurriaan H.',
+                                        'id' => 'https://orcid.org/0000-0002-7064-4069',
+                                        'type' => 'Person' },
+                                      { 'affiliation' => [{ 'name' => 'Netherlands eScience Center' }],
+                                        'familyName' => 'Klaver',
+                                        'givenName' => 'Tom',
+                                        'type' => 'Person' },
+                                      { 'affiliation' => [{ 'name' => 'Netherlands eScience Center' }],
+                                        'familyName' => 'Verhoeven',
+                                        'id' => 'https://orcid.org/0000-0002-5821-2060',
+                                        'givenName' => 'Stefan',
+                                        'type' => 'Person' },
+                                      { 'affiliation' => [{ 'name' => 'Humboldt-Universität zu Berlin' }],
+                                        'familyName' => 'Druskat',
+                                        'givenName' => 'Stephan',
+                                        'id' => 'https://orcid.org/0000-0003-4925-7248',
+                                        'type' => 'Person' },
+                                      { 'affiliation' => [{ 'name' => 'University of Oslo' }],
+                                        'familyName' => 'Leoncio',
+                                        'givenName' => 'Waldir',
+                                        'type' => 'Person' }])
+      expect(subject.titles).to eq([{ 'title' => 'cffconvert' }])
+      expect(subject.descriptions.first['description']).to start_with('Command line program to validate and convert CITATION.cff files')
+      expect(subject.subjects).to eq([{ 'subject' => 'bibliography' },
+                                      { 'subject' => 'bibtex' },
+                                      { 'subject' => 'cff' },
+                                      { 'subject' => 'citation' },
+                                      { 'subject' => 'citation.cff' },
+                                      { 'subject' => 'codemeta' },
+                                      { 'subject' => 'endnote' },
+                                      { 'subject' => 'ris' },
+                                      { 'subject' => 'citation file format' }])
+      expect(subject.version).to eq('2.0.0')
+      expect(subject.date).to eq('published' => '2021-09-22')
+      expect(subject.publisher).to eq('name' => 'GitHub')
+      expect(subject.license).to eq('id' => 'Apache-2.0', 'url' => 'http://www.apache.org/licenses/LICENSE-2.0')
+      expect(subject.references).to eq([{ 'doi' => 'https://doi.org/10.5281/zenodo.1310751',
+                                          'key' => 'https://doi.org/10.5281/zenodo.1310751',
+                                          'publicationYear' => '2018' },
+                                        { 'key' => 'https://blog.apastyle.org/apastyle/2015/01/how-to-cite-software-in-apa-style.html',
+                                          'url' => 'https://blog.apastyle.org/apastyle/2015/01/how-to-cite-software-in-apa-style.html' }])
+    end
+
+    it 'ruby-cff' do
+      # expect(subject.valid?).to be true
+      expect(subject.id).to eq('https://doi.org/10.5281/zenodo.1184077')
+      expect(subject.url).to eq('https://github.com/citation-file-format/ruby-cff')
+      expect(subject.type).to eq('Software')
+      expect(subject.creators).to eq([{ 'affiliation' => [{ 'name' => 'The University of Manchester, UK' }], 'familyName' => 'Haines', 'givenName' => 'Robert',
+                                        'id' => 'https://orcid.org/0000-0002-9538-7919', 'type' => 'Person' }, { 'name' => 'The Ruby Citation File Format Developers', 'type' => 'Organization' }])
+      expect(subject.titles).to eq([{ 'title' => 'Ruby CFF Library' }])
+      expect(subject.descriptions.first['description']).to start_with('This library provides a Ruby interface to manipulate Citation File Format files')
+      expect(subject.subjects).to eq([{ 'subject' => 'ruby' },
+                                      { 'subject' => 'credit' },
+                                      { 'subject' => 'software citation' },
+                                      { 'subject' => 'research software' },
+                                      { 'subject' => 'software sustainability' },
+                                      { 'subject' => 'metadata' },
+                                      { 'subject' => 'citation file format' },
+                                      { 'subject' => 'cff' }])
+      expect(subject.version).to eq('1.0.1')
+      expect(subject.date).to eq('published' => '2022-11-05')
+      expect(subject.publisher).to eq('name' => 'GitHub')
+      expect(subject.license).to eq('id' => 'Apache-2.0',
+                                    'url' => 'http://www.apache.org/licenses/LICENSE-2.0')
+      expect(subject.references).to eq([{ 'doi' => 'https://doi.org/10.5281/zenodo.1003149',
+                                          'key' => 'https://doi.org/10.5281/zenodo.1003149',
+                                          'publicationYear' => '2021' }])
+    end
+
+    it 'ruby-cff repository url' do
+      input = 'https://github.com/citation-file-format/ruby-cff'
+      subject = described_class.new(input: input)
+      # expect(subject.valid?).to be true
+      expect(subject.id).to eq('https://doi.org/10.5281/zenodo.1184077')
+      expect(subject.url).to eq('https://github.com/citation-file-format/ruby-cff')
+      expect(subject.type).to eq('Software')
+      expect(subject.creators).to eq([{ 'affiliation' => [{ 'name' => 'The University of Manchester, UK' }], 'familyName' => 'Haines', 'givenName' => 'Robert',
+                                        'id' => 'https://orcid.org/0000-0002-9538-7919', 'type' => 'Person' }, { 'name' => 'The Ruby Citation File Format Developers', 'type' => 'Organization' }])
+      expect(subject.titles).to eq([{ 'title' => 'Ruby CFF Library' }])
+      expect(subject.descriptions.first['description']).to start_with('This library provides a Ruby interface to manipulate Citation File Format files')
+      expect(subject.subjects).to eq([{ 'subject' => 'ruby' },
+                                      { 'subject' => 'credit' },
+                                      { 'subject' => 'software citation' },
+                                      { 'subject' => 'research software' },
+                                      { 'subject' => 'software sustainability' },
+                                      { 'subject' => 'metadata' },
+                                      { 'subject' => 'citation file format' },
+                                      { 'subject' => 'cff' }])
+      expect(subject.version).to eq('1.0.1')
+      expect(subject.date).to eq('published' => '2022-11-05')
+      expect(subject.publisher).to eq('name' => 'GitHub')
+      expect(subject.license).to eq('id' => 'Apache-2.0',
+                                    'url' => 'http://www.apache.org/licenses/LICENSE-2.0')
+      expect(subject.references).to eq([{ 'doi' => 'https://doi.org/10.5281/zenodo.1003149',
+                                          'key' => 'https://doi.org/10.5281/zenodo.1003149',
+                                          'publicationYear' => '2021' }])
+    end
+  end
+end