commonmeta-ruby 3.0.0

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Files changed (791) hide show
  1. checksums.yaml +7 -0
  2. data/.github/workflows/build.yml +38 -0
  3. data/.github/workflows/changelog.yml +36 -0
  4. data/.github/workflows/codeql-analysis.yml +72 -0
  5. data/.github/workflows/rubocop.yml +50 -0
  6. data/.gitignore +59 -0
  7. data/.rubocop.yml +182 -0
  8. data/.rubocop_todo.yml +76 -0
  9. data/.tool-versions +1 -0
  10. data/CHANGELOG.md +124 -0
  11. data/CITATION +16 -0
  12. data/CITATION.cff +20 -0
  13. data/Gemfile +5 -0
  14. data/Gemfile.lock +270 -0
  15. data/LICENSE.md +21 -0
  16. data/README.md +733 -0
  17. data/Rakefile +13 -0
  18. data/bin/commonmeta +9 -0
  19. data/commonmeta.gemspec +68 -0
  20. data/lib/commonmeta/array.rb +13 -0
  21. data/lib/commonmeta/author_utils.rb +172 -0
  22. data/lib/commonmeta/cli.rb +70 -0
  23. data/lib/commonmeta/crossref_utils.rb +343 -0
  24. data/lib/commonmeta/doi_utils.rb +81 -0
  25. data/lib/commonmeta/metadata.rb +269 -0
  26. data/lib/commonmeta/metadata_utils.rb +184 -0
  27. data/lib/commonmeta/pubmed.rb +36 -0
  28. data/lib/commonmeta/readers/bibtex_reader.rb +62 -0
  29. data/lib/commonmeta/readers/cff_reader.rb +146 -0
  30. data/lib/commonmeta/readers/codemeta_reader.rb +90 -0
  31. data/lib/commonmeta/readers/crossref_reader.rb +186 -0
  32. data/lib/commonmeta/readers/crossref_xml_reader.rb +379 -0
  33. data/lib/commonmeta/readers/csl_reader.rb +85 -0
  34. data/lib/commonmeta/readers/datacite_reader.rb +169 -0
  35. data/lib/commonmeta/readers/npm_reader.rb +94 -0
  36. data/lib/commonmeta/readers/ris_reader.rb +66 -0
  37. data/lib/commonmeta/readers/schema_org_reader.rb +300 -0
  38. data/lib/commonmeta/schema_utils.rb +19 -0
  39. data/lib/commonmeta/string.rb +7 -0
  40. data/lib/commonmeta/utils.rb +1351 -0
  41. data/lib/commonmeta/version.rb +5 -0
  42. data/lib/commonmeta/whitelist_scrubber.rb +54 -0
  43. data/lib/commonmeta/writers/bibtex_writer.rb +36 -0
  44. data/lib/commonmeta/writers/cff_writer.rb +63 -0
  45. data/lib/commonmeta/writers/citation_writer.rb +14 -0
  46. data/lib/commonmeta/writers/codemeta_writer.rb +33 -0
  47. data/lib/commonmeta/writers/crossref_xml_writer.rb +11 -0
  48. data/lib/commonmeta/writers/csl_writer.rb +11 -0
  49. data/lib/commonmeta/writers/csv_writer.rb +26 -0
  50. data/lib/commonmeta/writers/datacite_writer.rb +94 -0
  51. data/lib/commonmeta/writers/jats_writer.rb +138 -0
  52. data/lib/commonmeta/writers/rdf_xml_writer.rb +11 -0
  53. data/lib/commonmeta/writers/ris_writer.rb +41 -0
  54. data/lib/commonmeta/writers/schema_org_writer.rb +61 -0
  55. data/lib/commonmeta/writers/turtle_writer.rb +11 -0
  56. data/lib/commonmeta/xml_converter.rb +14 -0
  57. data/lib/commonmeta.rb +35 -0
  58. data/resources/2008/09/xsd.xsl +997 -0
  59. data/resources/cff.json +1827 -0
  60. data/resources/commonmeta_v0.9.json +393 -0
  61. data/resources/crossref/AccessIndicators.xsd +47 -0
  62. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
  63. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
  64. data/resources/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
  65. data/resources/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
  66. data/resources/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
  67. data/resources/crossref/JATS-journalpublishing1.xsd +6176 -0
  68. data/resources/crossref/clinicaltrials.xsd +61 -0
  69. data/resources/crossref/common5.3.1.xsd +1530 -0
  70. data/resources/crossref/crossref5.3.1.xsd +1949 -0
  71. data/resources/crossref/crossref_query_output3.0.xsd +1097 -0
  72. data/resources/crossref/fundref.xsd +49 -0
  73. data/resources/crossref/module-ali.xsd +39 -0
  74. data/resources/crossref/relations.xsd +444 -0
  75. data/resources/datacite-contributorType-v4.xsd +35 -0
  76. data/resources/datacite-dateType-v4.xsd +25 -0
  77. data/resources/datacite-descriptionType-v4.xsd +19 -0
  78. data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
  79. data/resources/datacite-nameType-v4.xsd +10 -0
  80. data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
  81. data/resources/datacite-relationType-v4.xsd +49 -0
  82. data/resources/datacite-resourceType-v4.xsd +28 -0
  83. data/resources/datacite-titleType-v4.xsd +14 -0
  84. data/resources/datacite-v3.json +508 -0
  85. data/resources/datacite-v4.json +512 -0
  86. data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
  87. data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
  88. data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
  89. data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
  90. data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
  91. data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
  92. data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
  93. data/resources/kernel-3.0/include/xml.xsd +286 -0
  94. data/resources/kernel-3.0/metadata.xsd +377 -0
  95. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +35 -0
  96. data/resources/kernel-4/include/datacite-dateType-v4.xsd +25 -0
  97. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
  98. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  99. data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
  100. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  101. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  102. data/resources/kernel-4/include/datacite-relationType-v4.xsd +51 -0
  103. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +43 -0
  104. data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
  105. data/resources/kernel-4/include/xml.xsd +286 -0
  106. data/resources/kernel-4/metadata.xsd +707 -0
  107. data/resources/oecd/dfg-mappings.json +1866 -0
  108. data/resources/oecd/for-mappings.json +1099 -0
  109. data/resources/oecd/fos-mappings.json +198 -0
  110. data/resources/schema_org/jsonldcontext.json +7477 -0
  111. data/resources/spdx/licenses.json +5297 -0
  112. data/resources/xml.xsd +286 -0
  113. data/rubocop.sarif +0 -0
  114. data/sonar-project.properties +11 -0
  115. data/spec/array_spec.rb +22 -0
  116. data/spec/author_utils_spec.rb +132 -0
  117. data/spec/cli_spec.rb +309 -0
  118. data/spec/doi_utils_spec.rb +318 -0
  119. data/spec/find_from_format_spec.rb +144 -0
  120. data/spec/fixtures/CITATION.cff +83 -0
  121. data/spec/fixtures/aida.json +82 -0
  122. data/spec/fixtures/cgimp_package.json +18 -0
  123. data/spec/fixtures/cit_package.json +19 -0
  124. data/spec/fixtures/citeproc-no-author.json +26 -0
  125. data/spec/fixtures/citeproc-no-categories.json +21 -0
  126. data/spec/fixtures/citeproc.json +30 -0
  127. data/spec/fixtures/codemeta.json +86 -0
  128. data/spec/fixtures/codemeta_v2.json +86 -0
  129. data/spec/fixtures/crosscite.json +63 -0
  130. data/spec/fixtures/crossref.bib +14 -0
  131. data/spec/fixtures/crossref.json +572 -0
  132. data/spec/fixtures/crossref.ris +15 -0
  133. data/spec/fixtures/crossref.xml +606 -0
  134. data/spec/fixtures/datacite.json +86 -0
  135. data/spec/fixtures/datacite_software.json +21 -0
  136. data/spec/fixtures/datacite_software_missing_comma.json +18 -0
  137. data/spec/fixtures/datacite_software_overlapping_keys.json +18 -0
  138. data/spec/fixtures/datacite_software_version.json +74 -0
  139. data/spec/fixtures/edam_package.json +12 -0
  140. data/spec/fixtures/maremma/codemeta.json +36 -0
  141. data/spec/fixtures/pure.bib +14 -0
  142. data/spec/fixtures/pure.ris +15 -0
  143. data/spec/fixtures/pure.xml +188 -0
  144. data/spec/fixtures/ris_bug.ris +9 -0
  145. data/spec/fixtures/schema_4.0.xml +140 -0
  146. data/spec/fixtures/schema_org.json +49 -0
  147. data/spec/fixtures/schema_org_front-matter.json +32 -0
  148. data/spec/fixtures/schema_org_geolocation.json +82 -0
  149. data/spec/fixtures/schema_org_geoshape.json +550 -0
  150. data/spec/fixtures/schema_org_gtex.json +75 -0
  151. data/spec/fixtures/schema_org_list.json +12623 -0
  152. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +25 -0
  153. data/spec/fixtures/schema_org_topmed.json +53 -0
  154. data/spec/fixtures/schema_org_type_as_array.json +41 -0
  155. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/default.yml +110 -0
  156. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_bibtex.yml +110 -0
  157. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_crossref_xml.yml +110 -0
  158. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_datacite.yml +110 -0
  159. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref/to_schema_org.yml +110 -0
  160. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/default.yml +55 -0
  161. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_bibtex.yml +55 -0
  162. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_crossref_xml.yml +55 -0
  163. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_datacite.yml +55 -0
  164. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_file/crossref_xml/to_schema_org.yml +55 -0
  165. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/default.yml +299 -0
  166. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_bibtex.yml +299 -0
  167. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_citation.yml +299 -0
  168. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_crossref_xml.yml +299 -0
  169. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_datacite.yml +299 -0
  170. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_jats.yml +299 -0
  171. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_schema_org.yml +299 -0
  172. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/default.yml +172 -0
  173. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_bibtex.yml +172 -0
  174. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_citation.yml +172 -0
  175. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite.yml +172 -0
  176. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_jats.yml +172 -0
  177. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_schema_org.yml +172 -0
  178. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/default.yml +1098 -0
  179. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_datacite.yml +1098 -0
  180. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_schema_org.yml +1100 -0
  181. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/crossref.yml +55 -0
  182. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/datacite.yml +55 -0
  183. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/jalc.yml +55 -0
  184. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/kisti.yml +55 -0
  185. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/medra.yml +55 -0
  186. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/op.yml +55 -0
  187. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/author.yml +164 -0
  188. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/no_author.yml +164 -0
  189. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/single_author.yml +164 -0
  190. data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/with_organization.yml +164 -0
  191. data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +247 -0
  192. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/crossref.yml +55 -0
  193. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/datacite.yml +55 -0
  194. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/jalc.yml +55 -0
  195. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/kisti.yml +55 -0
  196. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/medra.yml +55 -0
  197. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/not_found.yml +55 -0
  198. data/spec/fixtures/vcr_cassettes/Briard_Metadata/doi_registration_agency/op.yml +55 -0
  199. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/crossref.yml +55 -0
  200. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +55 -0
  201. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/datacite.yml +55 -0
  202. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/datacite_doi_http.yml +55 -0
  203. data/spec/fixtures/vcr_cassettes/Briard_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +55 -0
  204. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_for_match.yml +221 -0
  205. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +221 -0
  206. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_match.yml +221 -0
  207. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/hsh_to_fos_no_match.yml +221 -0
  208. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/name_to_fos_for_match.yml +221 -0
  209. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/name_to_fos_match.yml +221 -0
  210. data/spec/fixtures/vcr_cassettes/Briard_Metadata/fos/name_to_fos_no_match.yml +221 -0
  211. data/spec/fixtures/vcr_cassettes/Briard_Metadata/from_schema_org/with_id.yml +221 -0
  212. data/spec/fixtures/vcr_cassettes/Briard_Metadata/from_schema_org_creators/with_affiliation.yml +221 -0
  213. data/spec/fixtures/vcr_cassettes/Briard_Metadata/from_schema_org_creators/without_affiliation.yml +221 -0
  214. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/cff-converter-python.yml +200 -0
  215. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff.yml +154 -0
  216. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +154 -0
  217. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_codemeta_metadata/maremma.yml +86 -0
  218. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_codemeta_metadata/metadata_reports.yml +93 -0
  219. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +337 -0
  220. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +347 -0
  221. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +359 -0
  222. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/JaLC.yml +384 -0
  223. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/KISTI.yml +330 -0
  224. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/OP.yml +969 -0
  225. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/affiliation_is_space.yml +358 -0
  226. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/another_book.yml +312 -0
  227. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/another_book_chapter.yml +465 -0
  228. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/article_id_as_page_number.yml +276 -0
  229. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/author_literal.yml +492 -0
  230. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book.yml +523 -0
  231. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book_chapter.yml +377 -0
  232. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +336 -0
  233. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/book_oup.yml +289 -0
  234. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/component.yml +289 -0
  235. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/dataset.yml +299 -0
  236. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/dataset_usda.yml +341 -0
  237. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/date_in_future.yml +570 -0
  238. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/dissertation.yml +301 -0
  239. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/empty_given_name.yml +303 -0
  240. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/invalid_date.yml +307 -0
  241. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article.yml +461 -0
  242. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +276 -0
  243. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_with.yml +470 -0
  244. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +519 -0
  245. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_article_with_funding.yml +456 -0
  246. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/journal_issue.yml +270 -0
  247. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/mEDRA.yml +310 -0
  248. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/markup.yml +329 -0
  249. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/missing_creator.yml +307 -0
  250. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/multiple_issn.yml +393 -0
  251. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/multiple_titles.yml +265 -0
  252. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +860 -0
  253. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/not_found_error.yml +209 -0
  254. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/peer_review.yml +287 -0
  255. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/posted_content.yml +326 -0
  256. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/posted_content_copernicus.yml +297 -0
  257. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/report_osti.yml +315 -0
  258. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/vor_with_url.yml +451 -0
  259. data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/yet_another_book.yml +816 -0
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  681. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +299 -0
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  763. data/spec/fixtures/vivli.xml +17 -0
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  765. data/spec/readers/bibtex_reader_spec.rb +58 -0
  766. data/spec/readers/cff_reader_spec.rb +148 -0
  767. data/spec/readers/codemeta_reader_spec.rb +116 -0
  768. data/spec/readers/crossref_reader_spec.rb +919 -0
  769. data/spec/readers/crossref_xml_reader_spec.rb +948 -0
  770. data/spec/readers/csl_reader_spec.rb +61 -0
  771. data/spec/readers/datacite_reader_spec.rb +156 -0
  772. data/spec/readers/npm_reader_spec.rb +69 -0
  773. data/spec/readers/ris_reader_spec.rb +70 -0
  774. data/spec/readers/schema_org_reader_spec.rb +416 -0
  775. data/spec/schema_utils_spec.rb +16 -0
  776. data/spec/spec_helper.rb +96 -0
  777. data/spec/utils_spec.rb +631 -0
  778. data/spec/writers/bibtex_writer_spec.rb +160 -0
  779. data/spec/writers/cff_writer_spec.rb +118 -0
  780. data/spec/writers/citation_writer_spec.rb +51 -0
  781. data/spec/writers/codemeta_writer_spec.rb +47 -0
  782. data/spec/writers/crossref_xml_writer_spec.rb +173 -0
  783. data/spec/writers/csl_writer_spec.rb +291 -0
  784. data/spec/writers/csv_writer_spec.rb +82 -0
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  786. data/spec/writers/jats_writer_spec.rb +210 -0
  787. data/spec/writers/rdf_xml_writer_spec.rb +91 -0
  788. data/spec/writers/ris_writer_spec.rb +206 -0
  789. data/spec/writers/schema_org_writer_spec.rb +301 -0
  790. data/spec/writers/turtle_writer_spec.rb +85 -0
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+ {
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+ "mappingListVersion": "1.0",
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+ "fosLabel": "Biological sciences"
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+ "fosId": "2.2",
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+ "fosLabel": "Electrical engineering, electronic engineering, information engineering"
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+ },
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+ {
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+ "forId": "091302",
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+ "forLabel": "Automation and Control Engineering",
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+ "fosId": "2.2",
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+ "fosLabel": "Electrical engineering, electronic engineering, information engineering"
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+ },
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+ "forId": "020304",
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+ "forLabel": "Thermodynamics and Statistical Physics",
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151
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152
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153
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154
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155
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156
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157
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162
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168
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174
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180
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183
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186
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190
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192
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193
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194
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195
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196
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197
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198
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199
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201
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203
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204
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205
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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233
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234
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235
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236
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237
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238
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239
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240
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241
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242
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243
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244
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245
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246
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247
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248
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249
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250
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251
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252
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253
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254
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255
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256
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257
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258
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259
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260
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261
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262
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263
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264
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265
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266
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267
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268
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269
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270
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271
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272
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273
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274
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275
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276
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277
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278
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279
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280
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281
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282
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283
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284
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285
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286
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287
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288
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289
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290
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291
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292
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293
+ {
294
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295
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296
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297
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298
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299
+ {
300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
+ {
312
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313
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314
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315
+ "fosLabel": "Earth and related environmental sciences"
316
+ },
317
+ {
318
+ "forId": "0499",
319
+ "forLabel": "Other Earth Sciences",
320
+ "fosId": "1.5",
321
+ "fosLabel": "Earth and related environmental sciences"
322
+ },
323
+ {
324
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325
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326
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327
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328
+ },
329
+ {
330
+ "forId": "0502",
331
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332
+ "fosId": "1.5",
333
+ "fosLabel": "Earth and related environmental sciences"
334
+ },
335
+ {
336
+ "forId": "0503",
337
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338
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339
+ "fosLabel": "Agriculture, forestry and fisheries"
340
+ },
341
+ {
342
+ "forId": "0599",
343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
+ {
354
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355
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356
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357
+ "fosLabel": "Biological sciences"
358
+ },
359
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360
+ "forId": "0603",
361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
+ "fosLabel": "Biological sciences"
400
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401
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402
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403
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404
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405
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406
+ },
407
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408
+ "forId": "0702",
409
+ "forLabel": "Animal Production",
410
+ "fosId": "4.2",
411
+ "fosLabel": "Animal and dairy science"
412
+ },
413
+ {
414
+ "forId": "0703",
415
+ "forLabel": "Crop and Pasture Production",
416
+ "fosId": "4.1",
417
+ "fosLabel": "Agriculture, forestry and fisheries"
418
+ },
419
+ {
420
+ "forId": "0704",
421
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422
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423
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424
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425
+
426
+ {
427
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428
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429
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430
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431
+ },
432
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433
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434
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435
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436
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437
+ },
438
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439
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440
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441
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442
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443
+ },
444
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445
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446
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447
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448
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449
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450
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451
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452
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453
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454
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455
+ },
456
+ {
457
+ "forId": "0802",
458
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459
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460
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461
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462
+ {
463
+ "forId": "0803",
464
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465
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466
+ "fosLabel": "Computer and information sciences"
467
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468
+ {
469
+ "forId": "0804",
470
+ "forLabel": "Data Format",
471
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472
+ "fosLabel": "Computer and information sciences"
473
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474
+ {
475
+ "forId": "0805",
476
+ "forLabel": "Distributed Computing",
477
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478
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479
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480
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481
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482
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483
+ "fosId": "1.2",
484
+ "fosLabel": "Computer and information sciences"
485
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486
+ {
487
+ "forId": "0807",
488
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489
+ "fosId": "5.8",
490
+ "fosLabel": "Media and communications"
491
+ },
492
+ {
493
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494
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495
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496
+ "fosLabel": "Computer and information sciences"
497
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498
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499
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500
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501
+ "fosId": "2.3",
502
+ "fosLabel": "Mechanical engineering"
503
+ },
504
+ {
505
+ "forId": "0902",
506
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507
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508
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509
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510
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511
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512
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513
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514
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515
+ },
516
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517
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518
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519
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520
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521
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522
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523
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524
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525
+ "fosId": "2.1",
526
+ "fosLabel": "Civil engineering"
527
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528
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529
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530
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531
+ "fosId": "2.2",
532
+ "fosLabel": "Electrical engineering, electronic engineering, information engineering"
533
+ },
534
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535
+ "forId": "0907",
536
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537
+ "fosId": "2.7",
538
+ "fosLabel": "Environmental engineering"
539
+ },
540
+ {
541
+ "forId": "0908",
542
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543
+ "fosId": "2.11",
544
+ "fosLabel": "Other engineering and technologies"
545
+ },
546
+ {
547
+ "forId": "0909",
548
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549
+ "fosId": "2.7",
550
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551
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552
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553
+ "forId": "0910",
554
+ "forLabel": "Manufacturing Engineering",
555
+ "fosId": "2.2",
556
+ "fosLabel": "Electrical engineering, electronic engineering, information engineering"
557
+ },
558
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559
+ "forId": "0911",
560
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561
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562
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563
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564
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565
+ "forId": "0912",
566
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567
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568
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569
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570
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571
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572
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573
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574
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575
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576
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577
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578
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579
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580
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581
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582
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583
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584
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585
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586
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587
+ },
588
+ {
589
+ "forId": "0999",
590
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591
+ "fosId": "2.11",
592
+ "fosLabel": "Other engineering and technologies"
593
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594
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595
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596
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597
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598
+ "fosLabel": "Agricultural biotechnology"
599
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600
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601
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602
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603
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604
+ "fosLabel": "Environmental biotechnology"
605
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606
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607
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608
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609
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610
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611
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612
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613
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614
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615
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616
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617
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618
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619
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620
+ "forLabel": "Communication Technologies",
621
+ "fosId": "2.2",
622
+ "fosLabel": "Electrical engineering, electronic engineering, information engineering"
623
+ },
624
+ {
625
+ "forId": "1006",
626
+ "forLabel": "Computer Hardware",
627
+ "fosId": "2.2",
628
+ "fosLabel": "Electrical engineering, electronic engineering, information engineering"
629
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630
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631
+ "forId": "1007",
632
+ "forLabel": "Nanotechnology",
633
+ "fosId": "2.10",
634
+ "fosLabel": "Nanotechnology"
635
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636
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637
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638
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639
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640
+ "fosLabel": "Other engineering and technologies"
641
+ },
642
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643
+ "forId": "1101",
644
+ "forLabel": "Medical Biochemistry and Metabolomics",
645
+ "fosId": "3.2",
646
+ "fosLabel": "Clinical medicine"
647
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648
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649
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650
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651
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652
+ "fosLabel": "Clinical medicine"
653
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654
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655
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656
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657
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658
+ "fosLabel": "Clinical medicine"
659
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660
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661
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662
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663
+ "fosId": "3.2",
664
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665
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666
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667
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668
+ "forLabel": "Dentistry",
669
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670
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671
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672
+ {
673
+ "forId": "1106",
674
+ "forLabel": "Human Movement and Sports Science",
675
+ "fosId": "3.3",
676
+ "fosLabel": "Health sciences"
677
+ },
678
+ {
679
+ "forId": "1107",
680
+ "forLabel": "Immunology",
681
+ "fosId": "3.2",
682
+ "fosLabel": "Clinical medicine"
683
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684
+ {
685
+ "forId": "1108",
686
+ "forLabel": "Medical Microbiology",
687
+ "fosId": "3.3",
688
+ "fosLabel": "Health sciences"
689
+ },
690
+ {
691
+ "forId": "1109",
692
+ "forLabel": "Neurosciences",
693
+ "fosId": "3.2",
694
+ "fosLabel": "Clinical medicine"
695
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696
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697
+ "forId": "1110",
698
+ "forLabel": "Nursing",
699
+ "fosId": "3.3",
700
+ "fosLabel": "Health sciences"
701
+ },
702
+ {
703
+ "forId": "1111",
704
+ "forLabel": "Nutrition and Dietetics",
705
+ "fosId": "3.3",
706
+ "fosLabel": "Health sciences"
707
+ },
708
+ {
709
+ "forId": "1112",
710
+ "forLabel": "Oncology and Carcinogenesis",
711
+ "fosId": "3.2",
712
+ "fosLabel": "Clinical medicine"
713
+ },
714
+ {
715
+ "forId": "1113",
716
+ "forLabel": "Ophthalmology and Optometry",
717
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718
+ "fosLabel": "Clinical medicine"
719
+ },
720
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721
+ "forId": "1114",
722
+ "forLabel": "Paediatrics and Reproductive Medicine",
723
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724
+ "fosLabel": "Clinical medicine"
725
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726
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727
+ "forId": "1115",
728
+ "forLabel": "Pharmacology and Pharmaceutical Sciences",
729
+ "fosId": "3.2",
730
+ "fosLabel": "Clinical medicine"
731
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732
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733
+ "forId": "1116",
734
+ "forLabel": "Medical Physiology",
735
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736
+ "fosLabel": "Basic medicine"
737
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738
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739
+ "forId": "1117",
740
+ "forLabel": "Public Health and Health Services",
741
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742
+ "fosLabel": "Health sciences"
743
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744
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745
+ "forId": "1199",
746
+ "forLabel": "Other Medical and Health Sciences",
747
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748
+ "fosLabel": "Other medical sciences"
749
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750
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751
+ "forId": "1201",
752
+ "forLabel": "Architecture",
753
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754
+ "fosLabel": "Civil engineering"
755
+ },
756
+ {
757
+ "forId": "1202",
758
+ "forLabel": "Building",
759
+ "fosId": "2.1",
760
+ "fosLabel": "Civil engineering"
761
+ },
762
+ {
763
+ "forId": "1204",
764
+ "forLabel": "Engineering Design",
765
+ "fosId": "2.11",
766
+ "fosLabel": "Other engineering and technologies"
767
+ },
768
+ {
769
+ "forId": "1203",
770
+ "forLabel": "Design Practice and Management",
771
+ "fosId": "6.4",
772
+ "fosLabel": "Arts (arts, history of arts, performing arts, music)"
773
+ },
774
+ {
775
+ "forId": "1205",
776
+ "forLabel": "Urban and Regional Planning",
777
+ "fosId": "5.7",
778
+ "fosLabel": "Social and economic geography"
779
+ },
780
+ {
781
+ "forId": "1299",
782
+ "forLabel": "Other Built Environment and Design",
783
+ "fosId": "2.1",
784
+ "fosLabel": "Civil engineering"
785
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786
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787
+ "forId": "1301",
788
+ "forLabel": "Education Systems",
789
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790
+ "fosLabel": "Educational sciences"
791
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792
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793
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794
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795
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796
+ "fosLabel": "Educational sciences"
797
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798
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799
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800
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801
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802
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803
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804
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805
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806
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807
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808
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809
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810
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811
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812
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813
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814
+ "fosLabel": "Economics and business"
815
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816
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817
+ "forId": "1402",
818
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819
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820
+ "fosLabel": "Economics and business"
821
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822
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823
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824
+ "forLabel": "Econometrics",
825
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826
+ "fosLabel": "Economics and business"
827
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828
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829
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830
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831
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832
+ "fosLabel": "Economics and business"
833
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834
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835
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836
+ "forLabel": "Accounting, Auditing and Accountability",
837
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838
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839
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840
+ {
841
+ "forId": "1502",
842
+ "forLabel": "Banking, Finance and Investment",
843
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844
+ "fosLabel": "Economics and business"
845
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846
+ {
847
+ "forId": "1503",
848
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849
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850
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851
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852
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853
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854
+ "forLabel": "Commercial Services",
855
+ "fosId": "5.2",
856
+ "fosLabel": "Economics and business"
857
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858
+ {
859
+ "forId": "1505",
860
+ "forLabel": "Marketing",
861
+ "fosId": "5.2",
862
+ "fosLabel": "Economics and business"
863
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864
+ {
865
+ "forId": "1506",
866
+ "forLabel": "Tourism",
867
+ "fosId": "5.2",
868
+ "fosLabel": "Economics and business"
869
+ },
870
+ {
871
+ "forId": "1507",
872
+ "forLabel": "Transportation and Freight Services",
873
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874
+ "fosLabel": "Economics and business"
875
+ },
876
+ {
877
+ "forId": "1599",
878
+ "forLabel": "Other Commerce, Management, Tourism and Services",
879
+ "fosId": "5.2",
880
+ "fosLabel": "Economics and business"
881
+ },
882
+ {
883
+ "forId": "1601",
884
+ "forLabel": "Anthropology",
885
+ "fosId": "5.4",
886
+ "fosLabel": "Sociology"
887
+ },
888
+ {
889
+ "forId": "1602",
890
+ "forLabel": "Criminology",
891
+ "fosId": "5.5",
892
+ "fosLabel": "Law"
893
+ },
894
+ {
895
+ "forId": "1603",
896
+ "forLabel": "Demography",
897
+ "fosId": "5.4",
898
+ "fosLabel": "Sociology"
899
+ },
900
+ {
901
+ "forId": "1604",
902
+ "forLabel": "Human Geography",
903
+ "fosId": "5.7",
904
+ "fosLabel": "Social and economic geography"
905
+ },
906
+ {
907
+ "forId": "1605",
908
+ "forLabel": "Policy and Administration",
909
+ "fosId": "5.6",
910
+ "fosLabel": "Political science"
911
+ },
912
+ {
913
+ "forId": "1606",
914
+ "forLabel": "Political Science",
915
+ "fosId": "5.6",
916
+ "fosLabel": "Political science"
917
+ },
918
+ {
919
+ "forId": "1607",
920
+ "forLabel": "Social Work",
921
+ "fosId": "5.4",
922
+ "fosLabel": "Sociology"
923
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924
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925
+ "forId": "1608",
926
+ "forLabel": "Sociology",
927
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928
+ "fosLabel": "Sociology"
929
+ },
930
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931
+ "forId": "1699",
932
+ "forLabel": "Other Studies in Human Society",
933
+ "fosId": "5.4",
934
+ "fosLabel": "Sociology"
935
+ },
936
+ {
937
+ "forId": "1701",
938
+ "forLabel": "Psychology",
939
+ "fosId": "5.1",
940
+ "fosLabel": "Psychology"
941
+ },
942
+ {
943
+ "forId": "1702",
944
+ "forLabel": "Cognitive Sciences",
945
+ "fosId": "5.1",
946
+ "fosLabel": "Psychology"
947
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948
+ {
949
+ "forId": "1799",
950
+ "forLabel": "Other Psychology and Cognitive Sciences",
951
+ "fosId": "5.1",
952
+ "fosLabel": "Psychology"
953
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954
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955
+ "forId": "1801",
956
+ "forLabel": "Law",
957
+ "fosId": "5.5",
958
+ "fosLabel": "Law"
959
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960
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961
+ "forId": "1802",
962
+ "forLabel": "Maori Law",
963
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964
+ "fosLabel": "Law"
965
+ },
966
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967
+ "forId": "1899",
968
+ "forLabel": "Other Law and Legal Studies",
969
+ "fosId": "5.5",
970
+ "fosLabel": "Law"
971
+ },
972
+ {
973
+ "forId": "1901",
974
+ "forLabel": "Art Theory and Criticism",
975
+ "fosId": "6.4",
976
+ "fosLabel": "Arts (arts, history of arts, performing arts, music)"
977
+ },
978
+ {
979
+ "forId": "1902",
980
+ "forLabel": "Film, Television and Digital Media",
981
+ "fosId": "6.4",
982
+ "fosLabel": "Arts (arts, history of arts, performing arts, music)"
983
+ },
984
+ {
985
+ "forId": "1903",
986
+ "forLabel": "Journalism and Professional Writing",
987
+ "fosId": "5.8",
988
+ "fosLabel": "Media and communications"
989
+ },
990
+ {
991
+ "forId": "1904",
992
+ "forLabel": "Performing Arts and Creative Writing",
993
+ "fosId": "6.4",
994
+ "fosLabel": "Arts (arts, history of arts, performing arts, music)"
995
+ },
996
+ {
997
+ "forId": "1905",
998
+ "forLabel": "Visual Arts and Crafts",
999
+ "fosId": "6.4",
1000
+ "fosLabel": "Arts (arts, history of arts, performing arts, music)"
1001
+ },
1002
+ {
1003
+ "forId": "1999",
1004
+ "forLabel": "Other Studies in Creative Arts and Writing",
1005
+ "fosId": "6.4",
1006
+ "fosLabel": "Arts (arts, history of arts, performing arts, music)"
1007
+ },
1008
+ {
1009
+ "forId": "2001",
1010
+ "forLabel": "Communication and Media Studies",
1011
+ "fosId": "5.8",
1012
+ "fosLabel": "Media and communications"
1013
+ },
1014
+ {
1015
+ "forId": "2002",
1016
+ "forLabel": "Cultural Studies",
1017
+ "fosId": "6.5",
1018
+ "fosLabel": "Other humanities"
1019
+ },
1020
+ {
1021
+ "forId": "2003",
1022
+ "forLabel": "Language Studies",
1023
+ "fosId": "6.2",
1024
+ "fosLabel": "Languages and literature"
1025
+ },
1026
+ {
1027
+ "forId": "2004",
1028
+ "forLabel": "Linguistics",
1029
+ "fosId": "6.2",
1030
+ "fosLabel": "Languages and literature"
1031
+ },
1032
+ {
1033
+ "forId": "2005",
1034
+ "forLabel": "Literary Studies",
1035
+ "fosId": "6.2",
1036
+ "fosLabel": "Languages and literature"
1037
+ },
1038
+ {
1039
+ "forId": "2099",
1040
+ "forLabel": "Other Language, Communication and Culture",
1041
+ "fosId": "6.2",
1042
+ "fosLabel": "Languages and literature"
1043
+ },
1044
+ {
1045
+ "forId": "2101",
1046
+ "forLabel": "Archaelogy",
1047
+ "fosId": "6.1",
1048
+ "fosLabel": "History and archaeology"
1049
+ },
1050
+ {
1051
+ "forId": "2102",
1052
+ "forLabel": "Curatorial and Related Studies",
1053
+ "fosId": "5.8",
1054
+ "fosLabel": "Media and communications"
1055
+ },
1056
+ {
1057
+ "forId": "2103",
1058
+ "forLabel": "Historical Studies",
1059
+ "fosId": "6.1",
1060
+ "fosLabel": "History and archaeology"
1061
+ },
1062
+ {
1063
+ "forId": "2199",
1064
+ "forLabel": "Other History and Archaelogy",
1065
+ "fosId": "6.1",
1066
+ "fosLabel": "History and archaeology"
1067
+ },
1068
+ {
1069
+ "forId": "2201",
1070
+ "forLabel": "Applied Ethics",
1071
+ "fosId": "6.3",
1072
+ "fosLabel": "Philosophy, ethics and religion"
1073
+ },
1074
+ {
1075
+ "forId": "2202",
1076
+ "forLabel": "History and Philosophy of Specific Fields",
1077
+ "fosId": "6.3",
1078
+ "fosLabel": "Philosophy, ethics and religion"
1079
+ },
1080
+ {
1081
+ "forId": "2203",
1082
+ "forLabel": "Philosophy",
1083
+ "fosId": "6.3",
1084
+ "fosLabel": "Philosophy, ethics and religion"
1085
+ },
1086
+ {
1087
+ "forId": "2204",
1088
+ "forLabel": "Religion and Religious Studies",
1089
+ "fosId": "6.3",
1090
+ "fosLabel": "Philosophy, ethics and religion"
1091
+ },
1092
+ {
1093
+ "forId": "2299",
1094
+ "forLabel": "Other Philosophy and Religious Studies",
1095
+ "fosId": "6.3",
1096
+ "fosLabel": "Philosophy, ethics and religion"
1097
+ }
1098
+ ]
1099
+ }