snappy 3.2__cp313-cp313-macosx_11_0_arm64.whl

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  1. snappy/CyOpenGL.cpython-313-darwin.so +0 -0
  2. snappy/SnapPy.cpython-313-darwin.so +0 -0
  3. snappy/SnapPy.ico +0 -0
  4. snappy/SnapPy.png +0 -0
  5. snappy/SnapPyHP.cpython-313-darwin.so +0 -0
  6. snappy/__init__.py +760 -0
  7. snappy/app.py +605 -0
  8. snappy/app_menus.py +372 -0
  9. snappy/browser.py +998 -0
  10. snappy/cache.py +25 -0
  11. snappy/canonical.py +249 -0
  12. snappy/cusps/__init__.py +38 -0
  13. snappy/cusps/cusp_area_matrix.py +101 -0
  14. snappy/cusps/cusp_areas_from_matrix.py +173 -0
  15. snappy/cusps/maximal_cusp_area_matrix.py +136 -0
  16. snappy/cusps/test.py +21 -0
  17. snappy/cusps/trig_cusp_area_matrix.py +63 -0
  18. snappy/database.py +454 -0
  19. snappy/db_utilities.py +79 -0
  20. snappy/decorated_isosig.py +710 -0
  21. snappy/dev/__init__.py +0 -0
  22. snappy/dev/extended_ptolemy/__init__.py +8 -0
  23. snappy/dev/extended_ptolemy/closed.py +106 -0
  24. snappy/dev/extended_ptolemy/complexVolumesClosed.py +149 -0
  25. snappy/dev/extended_ptolemy/direct.py +42 -0
  26. snappy/dev/extended_ptolemy/extended.py +406 -0
  27. snappy/dev/extended_ptolemy/giac_helper.py +43 -0
  28. snappy/dev/extended_ptolemy/giac_rur.py +129 -0
  29. snappy/dev/extended_ptolemy/gluing.py +46 -0
  30. snappy/dev/extended_ptolemy/phc_wrapper.py +220 -0
  31. snappy/dev/extended_ptolemy/printMatrices.py +70 -0
  32. snappy/dev/vericlosed/__init__.py +1 -0
  33. snappy/dev/vericlosed/computeApproxHyperbolicStructureNew.py +159 -0
  34. snappy/dev/vericlosed/computeApproxHyperbolicStructureOrb.py +90 -0
  35. snappy/dev/vericlosed/computeVerifiedHyperbolicStructure.py +111 -0
  36. snappy/dev/vericlosed/gimbalLoopFinder.py +130 -0
  37. snappy/dev/vericlosed/hyperbolicStructure.py +313 -0
  38. snappy/dev/vericlosed/krawczykCertifiedEdgeLengthsEngine.py +165 -0
  39. snappy/dev/vericlosed/oneVertexTruncatedComplex.py +122 -0
  40. snappy/dev/vericlosed/orb/__init__.py +1 -0
  41. snappy/dev/vericlosed/orb/orb_solution_for_snappea_finite_triangulation_mac +0 -0
  42. snappy/dev/vericlosed/parseVertexGramMatrixFile.py +47 -0
  43. snappy/dev/vericlosed/polishApproxHyperbolicStructure.py +61 -0
  44. snappy/dev/vericlosed/test.py +54 -0
  45. snappy/dev/vericlosed/truncatedComplex.py +176 -0
  46. snappy/dev/vericlosed/verificationError.py +58 -0
  47. snappy/dev/vericlosed/verifyHyperbolicStructureEngine.py +177 -0
  48. snappy/doc/_images/SnapPy-196.png +0 -0
  49. snappy/doc/_images/geodesics.jpg +0 -0
  50. snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
  51. snappy/doc/_images/m125_paper_plane.jpg +0 -0
  52. snappy/doc/_images/mac.png +0 -0
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  54. snappy/doc/_images/o9_00000_systole_paper_plane_closer.jpg +0 -0
  55. snappy/doc/_images/plink-action.png +0 -0
  56. snappy/doc/_images/ubuntu.png +0 -0
  57. snappy/doc/_images/win7.png +0 -0
  58. snappy/doc/_sources/additional_classes.rst.txt +40 -0
  59. snappy/doc/_sources/bugs.rst.txt +14 -0
  60. snappy/doc/_sources/censuses.rst.txt +51 -0
  61. snappy/doc/_sources/credits.rst.txt +75 -0
  62. snappy/doc/_sources/development.rst.txt +259 -0
  63. snappy/doc/_sources/index.rst.txt +182 -0
  64. snappy/doc/_sources/installing.rst.txt +247 -0
  65. snappy/doc/_sources/manifold.rst.txt +6 -0
  66. snappy/doc/_sources/manifoldhp.rst.txt +46 -0
  67. snappy/doc/_sources/news.rst.txt +355 -0
  68. snappy/doc/_sources/other.rst.txt +25 -0
  69. snappy/doc/_sources/platonic_census.rst.txt +20 -0
  70. snappy/doc/_sources/plink.rst.txt +102 -0
  71. snappy/doc/_sources/ptolemy.rst.txt +66 -0
  72. snappy/doc/_sources/ptolemy_classes.rst.txt +42 -0
  73. snappy/doc/_sources/ptolemy_examples1.rst.txt +298 -0
  74. snappy/doc/_sources/ptolemy_examples2.rst.txt +363 -0
  75. snappy/doc/_sources/ptolemy_examples3.rst.txt +301 -0
  76. snappy/doc/_sources/ptolemy_examples4.rst.txt +61 -0
  77. snappy/doc/_sources/ptolemy_prelim.rst.txt +105 -0
  78. snappy/doc/_sources/screenshots.rst.txt +21 -0
  79. snappy/doc/_sources/snap.rst.txt +87 -0
  80. snappy/doc/_sources/snappy.rst.txt +28 -0
  81. snappy/doc/_sources/spherogram.rst.txt +103 -0
  82. snappy/doc/_sources/todo.rst.txt +47 -0
  83. snappy/doc/_sources/triangulation.rst.txt +11 -0
  84. snappy/doc/_sources/tutorial.rst.txt +49 -0
  85. snappy/doc/_sources/verify.rst.txt +210 -0
  86. snappy/doc/_sources/verify_internals.rst.txt +79 -0
  87. snappy/doc/_static/SnapPy-horizontal-128.png +0 -0
  88. snappy/doc/_static/SnapPy.ico +0 -0
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  139. snappy/doc/_static/js/theme.js +1 -0
  140. snappy/doc/_static/js/versions.js +228 -0
  141. snappy/doc/_static/language_data.js +199 -0
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  146. snappy/doc/_static/snappy_furo.css +33 -0
  147. snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -0
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  149. snappy/doc/additional_classes.html +1500 -0
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  152. snappy/doc/credits.html +181 -0
  153. snappy/doc/development.html +384 -0
  154. snappy/doc/genindex.html +1331 -0
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  157. snappy/doc/manifold.html +3452 -0
  158. snappy/doc/manifoldhp.html +180 -0
  159. snappy/doc/news.html +388 -0
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  162. snappy/doc/platonic_census.html +375 -0
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  164. snappy/doc/ptolemy.html +254 -0
  165. snappy/doc/ptolemy_classes.html +1144 -0
  166. snappy/doc/ptolemy_examples1.html +409 -0
  167. snappy/doc/ptolemy_examples2.html +471 -0
  168. snappy/doc/ptolemy_examples3.html +414 -0
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  171. snappy/doc/py-modindex.html +165 -0
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  178. snappy/doc/todo.html +166 -0
  179. snappy/doc/triangulation.html +1584 -0
  180. snappy/doc/tutorial.html +159 -0
  181. snappy/doc/verify.html +330 -0
  182. snappy/doc/verify_internals.html +1235 -0
  183. snappy/drilling/__init__.py +456 -0
  184. snappy/drilling/barycentric.py +103 -0
  185. snappy/drilling/constants.py +5 -0
  186. snappy/drilling/crush.py +270 -0
  187. snappy/drilling/cusps.py +125 -0
  188. snappy/drilling/debug.py +242 -0
  189. snappy/drilling/epsilons.py +6 -0
  190. snappy/drilling/exceptions.py +55 -0
  191. snappy/drilling/moves.py +620 -0
  192. snappy/drilling/peripheral_curves.py +210 -0
  193. snappy/drilling/perturb.py +188 -0
  194. snappy/drilling/shorten.py +36 -0
  195. snappy/drilling/subdivide.py +274 -0
  196. snappy/drilling/test.py +23 -0
  197. snappy/drilling/test_cases.py +126 -0
  198. snappy/drilling/tracing.py +351 -0
  199. snappy/exceptions.py +26 -0
  200. snappy/export_stl.py +120 -0
  201. snappy/exterior_to_link/__init__.py +2 -0
  202. snappy/exterior_to_link/barycentric_geometry.py +463 -0
  203. snappy/exterior_to_link/exceptions.py +6 -0
  204. snappy/exterior_to_link/geodesic_map.json +14408 -0
  205. snappy/exterior_to_link/hyp_utils.py +112 -0
  206. snappy/exterior_to_link/link_projection.py +323 -0
  207. snappy/exterior_to_link/main.py +197 -0
  208. snappy/exterior_to_link/mcomplex_with_expansion.py +261 -0
  209. snappy/exterior_to_link/mcomplex_with_link.py +687 -0
  210. snappy/exterior_to_link/mcomplex_with_memory.py +162 -0
  211. snappy/exterior_to_link/pl_utils.py +491 -0
  212. snappy/exterior_to_link/put_in_S3.py +156 -0
  213. snappy/exterior_to_link/rational_linear_algebra.py +123 -0
  214. snappy/exterior_to_link/rational_linear_algebra_wrapped.py +135 -0
  215. snappy/exterior_to_link/simplify_to_base_tri.py +114 -0
  216. snappy/exterior_to_link/stored_moves.py +475 -0
  217. snappy/exterior_to_link/test.py +31 -0
  218. snappy/filedialog.py +28 -0
  219. snappy/geometric_structure/__init__.py +212 -0
  220. snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
  221. snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
  222. snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
  223. snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
  224. snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
  225. snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
  226. snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
  227. snappy/geometric_structure/geodesic/__init__.py +0 -0
  228. snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
  229. snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
  230. snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
  231. snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
  232. snappy/geometric_structure/geodesic/constants.py +6 -0
  233. snappy/geometric_structure/geodesic/exceptions.py +22 -0
  234. snappy/geometric_structure/geodesic/fixed_points.py +93 -0
  235. snappy/geometric_structure/geodesic/geodesic_start_point_info.py +435 -0
  236. snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
  237. snappy/geometric_structure/geodesic/line.py +30 -0
  238. snappy/geometric_structure/geodesic/multiplicity.py +127 -0
  239. snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
  240. snappy/geometric_structure/test.py +22 -0
  241. snappy/gui.py +121 -0
  242. snappy/horoviewer.py +443 -0
  243. snappy/hyperboloid/__init__.py +212 -0
  244. snappy/hyperboloid/distances.py +245 -0
  245. snappy/hyperboloid/horoball.py +19 -0
  246. snappy/hyperboloid/line.py +35 -0
  247. snappy/hyperboloid/point.py +9 -0
  248. snappy/hyperboloid/triangle.py +29 -0
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  250. snappy/infowindow.py +65 -0
  251. snappy/isometry_signature.py +382 -0
  252. snappy/len_spec/__init__.py +596 -0
  253. snappy/len_spec/geodesic_info.py +110 -0
  254. snappy/len_spec/geodesic_key_info_dict.py +117 -0
  255. snappy/len_spec/geodesic_piece.py +143 -0
  256. snappy/len_spec/geometric_structure.py +182 -0
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  258. snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
  259. snappy/len_spec/spine.py +206 -0
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  261. snappy/len_spec/test_cases.py +69 -0
  262. snappy/len_spec/tile.py +275 -0
  263. snappy/len_spec/word.py +86 -0
  264. snappy/manifolds/HTWKnots/alternating.gz +0 -0
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  271. snappy/pari.py +41 -0
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  277. snappy/ptolemy/fieldExtensions.py +153 -0
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  362. snappy/raytracing/additional_len_spec_choices.py +63 -0
  363. snappy/raytracing/cohomology_fractal.py +197 -0
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  367. snappy/raytracing/geodesic_tube_info.py +174 -0
  368. snappy/raytracing/geodesics.py +246 -0
  369. snappy/raytracing/geodesics_window.py +258 -0
  370. snappy/raytracing/gui_utilities.py +293 -0
  371. snappy/raytracing/hyperboloid_navigation.py +556 -0
  372. snappy/raytracing/hyperboloid_utilities.py +234 -0
  373. snappy/raytracing/ideal_raytracing_data.py +592 -0
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  379. snappy/raytracing/shaders/NonGeometric.png +0 -0
  380. snappy/raytracing/shaders/__init__.py +101 -0
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  383. snappy/raytracing/tooltip.py +146 -0
  384. snappy/raytracing/upper_halfspace_utilities.py +98 -0
  385. snappy/raytracing/view_scale_controller.py +98 -0
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  396. snappy/snap/character_varieties.py +375 -0
  397. snappy/snap/find_field.py +372 -0
  398. snappy/snap/fundamental_polyhedron.py +569 -0
  399. snappy/snap/generators.py +39 -0
  400. snappy/snap/interval_reps.py +81 -0
  401. snappy/snap/kernel_structures.py +128 -0
  402. snappy/snap/mcomplex_base.py +18 -0
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  407. snappy/snap/peripheral/peripheral.py +159 -0
  408. snappy/snap/peripheral/surface.py +522 -0
  409. snappy/snap/peripheral/test.py +35 -0
  410. snappy/snap/polished_reps.py +335 -0
  411. snappy/snap/shapes.py +152 -0
  412. snappy/snap/slice_obs_HKL.py +668 -0
  413. snappy/snap/t3mlite/__init__.py +2 -0
  414. snappy/snap/t3mlite/arrow.py +243 -0
  415. snappy/snap/t3mlite/corner.py +22 -0
  416. snappy/snap/t3mlite/edge.py +172 -0
  417. snappy/snap/t3mlite/face.py +37 -0
  418. snappy/snap/t3mlite/files.py +211 -0
  419. snappy/snap/t3mlite/homology.py +53 -0
  420. snappy/snap/t3mlite/linalg.py +419 -0
  421. snappy/snap/t3mlite/mcomplex.py +1499 -0
  422. snappy/snap/t3mlite/perm4.py +320 -0
  423. snappy/snap/t3mlite/setup.py +12 -0
  424. snappy/snap/t3mlite/simplex.py +199 -0
  425. snappy/snap/t3mlite/spun.py +297 -0
  426. snappy/snap/t3mlite/surface.py +519 -0
  427. snappy/snap/t3mlite/test.py +20 -0
  428. snappy/snap/t3mlite/test_vs_regina.py +86 -0
  429. snappy/snap/t3mlite/tetrahedron.py +109 -0
  430. snappy/snap/t3mlite/vertex.py +42 -0
  431. snappy/snap/test.py +134 -0
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  434. snappy/test_cases.py +263 -0
  435. snappy/testing.py +131 -0
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  439. snappy/tiling/floor.py +49 -0
  440. snappy/tiling/hyperboloid_dict.py +54 -0
  441. snappy/tiling/iter_utils.py +78 -0
  442. snappy/tiling/lifted_tetrahedron.py +22 -0
  443. snappy/tiling/lifted_tetrahedron_set.py +54 -0
  444. snappy/tiling/real_hash_dict.py +164 -0
  445. snappy/tiling/test.py +23 -0
  446. snappy/tiling/tile.py +215 -0
  447. snappy/tiling/triangle.py +33 -0
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  449. snappy/twister/__init__.py +20 -0
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  451. snappy/twister/surfaces/S_0_1 +3 -0
  452. snappy/twister/surfaces/S_0_2 +3 -0
  453. snappy/twister/surfaces/S_0_4 +7 -0
  454. snappy/twister/surfaces/S_0_4_Lantern +8 -0
  455. snappy/twister/surfaces/S_1 +3 -0
  456. snappy/twister/surfaces/S_1_1 +4 -0
  457. snappy/twister/surfaces/S_1_2 +5 -0
  458. snappy/twister/surfaces/S_1_2_5 +6 -0
  459. snappy/twister/surfaces/S_2 +6 -0
  460. snappy/twister/surfaces/S_2_1 +8 -0
  461. snappy/twister/surfaces/S_2_heeg +10 -0
  462. snappy/twister/surfaces/S_3 +8 -0
  463. snappy/twister/surfaces/S_3_1 +10 -0
  464. snappy/twister/surfaces/S_4_1 +12 -0
  465. snappy/twister/surfaces/S_5_1 +14 -0
  466. snappy/twister/surfaces/heeg_fig8 +9 -0
  467. snappy/twister/twister_core.cpython-313-darwin.so +0 -0
  468. snappy/upper_halfspace/__init__.py +146 -0
  469. snappy/upper_halfspace/ideal_point.py +26 -0
  470. snappy/verify/__init__.py +13 -0
  471. snappy/verify/canonical.py +542 -0
  472. snappy/verify/complex_volume/__init__.py +18 -0
  473. snappy/verify/complex_volume/adjust_torsion.py +86 -0
  474. snappy/verify/complex_volume/closed.py +168 -0
  475. snappy/verify/complex_volume/compute_ptolemys.py +90 -0
  476. snappy/verify/complex_volume/cusped.py +56 -0
  477. snappy/verify/complex_volume/extended_bloch.py +201 -0
  478. snappy/verify/cusp_translations.py +85 -0
  479. snappy/verify/edge_equations.py +80 -0
  480. snappy/verify/exceptions.py +254 -0
  481. snappy/verify/hyperbolicity.py +224 -0
  482. snappy/verify/interval_newton_shapes_engine.py +523 -0
  483. snappy/verify/interval_tree.py +400 -0
  484. snappy/verify/krawczyk_shapes_engine.py +518 -0
  485. snappy/verify/maximal_cusp_area_matrix/__init__.py +46 -0
  486. snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +419 -0
  487. snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +153 -0
  488. snappy/verify/real_algebra.py +286 -0
  489. snappy/verify/shapes.py +25 -0
  490. snappy/verify/short_slopes.py +200 -0
  491. snappy/verify/square_extensions.py +1005 -0
  492. snappy/verify/test.py +78 -0
  493. snappy/verify/upper_halfspace/__init__.py +9 -0
  494. snappy/verify/upper_halfspace/extended_matrix.py +100 -0
  495. snappy/verify/upper_halfspace/finite_point.py +283 -0
  496. snappy/verify/upper_halfspace/ideal_point.py +426 -0
  497. snappy/verify/volume.py +128 -0
  498. snappy/version.py +2 -0
  499. snappy-3.2.dist-info/METADATA +58 -0
  500. snappy-3.2.dist-info/RECORD +503 -0
  501. snappy-3.2.dist-info/WHEEL +5 -0
  502. snappy-3.2.dist-info/entry_points.txt +2 -0
  503. snappy-3.2.dist-info/top_level.txt +28 -0
@@ -0,0 +1,406 @@
1
+ """
2
+ Computing the extended Ptolemy variety of Goerner-Zickert for N = 2.
3
+ """
4
+ import snappy
5
+ import snappy.snap.t3mlite as t3m
6
+ import snappy.snap.peripheral as peripheral
7
+ from sage.all import ZZ, QQ, GF, gcd, PolynomialRing, cyclotomic_polynomial
8
+
9
+ directed_edges = [(a, b) for a in range(4) for b in range(4) if a < b]
10
+
11
+ edge_to_var = {e:i for i, e in enumerate(directed_edges)}
12
+
13
+ t3m_edge_to_tuple = {t3m.E01:(0,1), t3m.E02:(0,2), t3m.E03:(0,3),
14
+ t3m.E12:(1,2), t3m.E13:(1,3), t3m.E23:(2,3)}
15
+
16
+ to_t3m_edge = {(0,1):t3m.E01, (0,2):t3m.E02, (0,3):t3m.E03,
17
+ (1,2):t3m.E12, (1,3):t3m.E13, (2,3):t3m.E23}
18
+
19
+
20
+ def arrow(mcomplex, tet, face, edge):
21
+ return t3m.Arrow(to_t3m_edge[edge], t3m.TwoSubsimplices[face],
22
+ mcomplex.Tetrahedra[tet])
23
+
24
+
25
+ def faces_around_edge(mcomplex, tet, edge):
26
+ face = min(set(range(4)) - set(edge))
27
+ ans = [(tet, face, edge)]
28
+ A0 = arrow(mcomplex, tet, face, edge)
29
+ A = A0.copy().next()
30
+ while A != A0:
31
+ tet = A.Tetrahedron.Index
32
+ face = t3m.FaceIndex[A.Face]
33
+ edge = t3m_edge_to_tuple[A.Edge]
34
+ ans.append((tet, face, edge))
35
+ A.next()
36
+ return ans
37
+
38
+ def lex_first_edge_starts(mcomplex):
39
+ """
40
+ Returns a list of containing tuples of the form (tet, face, edge),
41
+ one at each edge.
42
+ """
43
+ T = mcomplex
44
+ ans = []
45
+ for edge in T.Edges:
46
+ poss_starts = []
47
+ for C in edge.Corners:
48
+ t = C.Tetrahedron.Index
49
+ e = t3m_edge_to_tuple[C.Subsimplex]
50
+ poss_starts.append((t, e))
51
+ ans.append(min(poss_starts))
52
+ return sorted(ans)
53
+
54
+ def arrows_around_edges(manifold):
55
+ T = t3m.Mcomplex(manifold)
56
+ starts = lex_first_edge_starts(T)
57
+ ans = []
58
+ return [faces_around_edge(T, tet, edge) for tet, edge in starts]
59
+
60
+
61
+ def parse_ptolemy_edge(var):
62
+ c, index, tet = var.split('_')
63
+ tet = int(tet)
64
+ edge = tuple(i for i in range(4) if index[i] == '1')
65
+ return tet, edge
66
+
67
+
68
+ def parse_ptolemy_face(var):
69
+ s, index, tet = var.split('_')
70
+ return int(tet), int(index)
71
+
72
+
73
+ class EdgeGluings():
74
+ def __init__(self, gen_obs_class):
75
+ assert gen_obs_class._N == 2
76
+ M = gen_obs_class._manifold
77
+ n = M.num_tetrahedra()
78
+ gluings = t3m.files.read_SnapPea_file(data=M._to_string())
79
+ primary_faces = [parse_ptolemy_face(x[2]) for x in
80
+ M._ptolemy_equations_identified_face_classes()]
81
+ ptolemy_idents = M._ptolemy_equations_identified_coordinates(2, gen_obs_class.H2_class)
82
+ self.edge_gluings = edge_gluings = dict()
83
+
84
+ for i, (tet0, face0) in enumerate(primary_faces):
85
+ for j in range(3):
86
+ orient_sign, obs_contrib, edge_var_0, edge_var_1 = ptolemy_idents[3*i + j]
87
+ sign = orient_sign * (-1)**obs_contrib
88
+ tet0alt, edge0 = parse_ptolemy_edge(edge_var_0)
89
+ tet1, edge1 = parse_ptolemy_edge(edge_var_1)
90
+ perm = gluings[tet0][1][face0]
91
+ face1 = perm[face0]
92
+ edge_gluings[tet0, face0, edge0] = [(tet1, face1, edge1), sign]
93
+ edge_gluings[tet1, face1, edge1] = [(tet0, face0, edge0), sign]
94
+
95
+ # Sanity checks that our enumeration of the face
96
+ # idenifications and edges agrees with
97
+ # "ptolemy_coordinates.c".
98
+ assert tet0 == tet0alt
99
+ assert tet1 == gluings[tet0][0][face0]
100
+ a, b = edge0
101
+ c, d = edge1
102
+ if perm[a] == c and perm[b] == d:
103
+ assert orient_sign == 1
104
+ else:
105
+ assert perm[a] == d and perm[b] == c and orient_sign == -1
106
+
107
+ def __getitem__(self, index):
108
+ return self.edge_gluings[index]
109
+
110
+ def simplify_equation(poly):
111
+ """
112
+ Simplifies the given polynomial in three ways:
113
+
114
+ 1. Cancels any M*m and L*l pairs.
115
+
116
+ 2. Sets a0 = 1.
117
+
118
+ 3. Since all variables represent non-zero quantities, divides by
119
+ the gcd of the monomials terms.
120
+
121
+ sage: R = PolynomialRing(QQ, ['M', 'L', 'm', 'l', 'a0', 'x', 'y', 'z'])
122
+ sage: simplify_equation(R('5*M*m^2*L*l^3*x*y + 3*M*m*L*l + 11*M^10*m^3*L^5*l^2*z'))
123
+ 11*M^7*L^3*z + 5*m*l^2*x*y + 3
124
+ sage: simplify_equation(R('-a0*x + M^7*m^7*x + L^9*l^3*z + a0^2'))
125
+ L^6*z + 1
126
+ sage: simplify_equation(R('M^2*L*a0*x - M*L*y^2*x + M*z^2*x'))
127
+ -L*y^2 + M*L + z^2
128
+ """
129
+ R = poly.parent()
130
+ ans = R.zero()
131
+ try:
132
+ # Should we just permanently commit to c_1100_0
133
+ poly = poly.subs(a0=1)
134
+ except:
135
+ poly = poly.subs(c_1100_0=1)
136
+
137
+ for coeff, monomial in list(poly):
138
+ e = monomial.exponents()[0]
139
+ M_exp = e[0] - e[2]
140
+ L_exp = e[1] - e[3]
141
+ if M_exp >= 0:
142
+ M_p, M_n = M_exp, 0
143
+ else:
144
+ M_p, M_n = 0, -M_exp
145
+ if L_exp >= 0:
146
+ L_p, L_n = L_exp, 0
147
+ else:
148
+ L_p, L_n = 0, -L_exp
149
+ ans += coeff * R.monomial(M_p, L_p, M_n, L_n, *e[4:])
150
+ ans = ans // gcd([mono for coeff, mono in list(ans)])
151
+ return ans
152
+
153
+ def extended_ptolemy_equations(manifold, gen_obs_class=None,
154
+ nonzero_cond=True, return_full_var_dict = False,
155
+ notation = 'short'):
156
+ r"""
157
+ We assign ptolemy coordinates ['a', 'b', 'c', 'd', 'e', 'f'] to the
158
+ *directed* edges::
159
+
160
+ [(0, 1), (0, 2), (0, 3), (1, 2), (1, 3), (2, 3)]
161
+
162
+
163
+ where recall that the basic orientation convention of t3m and
164
+ SnapPy is that a positively oriented simplex is as below. ::
165
+
166
+ 1
167
+ /|\
168
+ d / | \ e
169
+ / | \
170
+ / | \
171
+ 2----|----3 with back edge from 2 to 3 labelled f.
172
+ \ | /
173
+ b \ |a / c
174
+ \ | /
175
+ \|/
176
+ 0
177
+
178
+ sage: M = Manifold('m016')
179
+ sage: I = extended_ptolemy_equations(M)
180
+ sage: I.dimension()
181
+ 1
182
+ """
183
+ if gen_obs_class is None:
184
+ gen_obs_class = manifold.ptolemy_generalized_obstruction_classes(2)[0]
185
+
186
+ m_star, l_star = peripheral.peripheral_cohomology_basis(manifold)
187
+
188
+ n = manifold.num_tetrahedra()
189
+
190
+ if notation == 'short':
191
+ var_names = ['a', 'b', 'c', 'd', 'e', 'f']
192
+ first_var_name = 'a0'
193
+ else:
194
+ var_names = ['c_1100_',
195
+ 'c_1010_',
196
+ 'c_1001_',
197
+ 'c_0110_',
198
+ 'c_0101_',
199
+ 'c_0011_']
200
+ first_var_name = 'c_1100_0'
201
+
202
+ tet_vars = [x + repr(d) for d in range(n) for x in var_names]
203
+
204
+ def var(tet, edge):
205
+ return tet_vars[6*tet + directed_edges.index(edge)]
206
+
207
+ all_arrows = arrows_around_edges(manifold)
208
+ independent_vars = [var(a[0][0], a[0][2]) for a in all_arrows]
209
+ assert first_var_name in independent_vars
210
+ if nonzero_cond:
211
+ nonzero_cond_vars = [v.swapcase() for v in independent_vars]
212
+ else:
213
+ nonzero_cond_vars = []
214
+ R = PolynomialRing(QQ, ['M', 'L', 'm', 'l'] + independent_vars + nonzero_cond_vars)
215
+ M, L, m, l= R('M'), R('L'), R('m'), R('l')
216
+
217
+ def var(tet, edge):
218
+ return tet_vars[6*tet + directed_edges.index(edge)]
219
+
220
+ in_terms_of_indep_vars = {v:R(v) for v in independent_vars}
221
+ in_terms_of_indep_vars['M'] = M
222
+ in_terms_of_indep_vars['L'] = L
223
+ edge_gluings = EdgeGluings(gen_obs_class)
224
+
225
+ in_terms_of_indep_vars_data = { v: (1, 0, 0, v) for v in independent_vars }
226
+
227
+ for around_one_edge in arrows_around_edges(manifold):
228
+ tet0, face0, edge0 = around_one_edge[0]
229
+ indep_var = R(var(tet0, edge0))
230
+ sign, m_e, l_e = 1, 0, 0
231
+ for tet1, face1, edge1 in around_one_edge[:-1]:
232
+ (tet2, face2, edge2), a_sign = edge_gluings[tet1, face1, edge1]
233
+ sign = a_sign * sign
234
+ m_e -= sum(m_star[tet1, t3m.TwoSubsimplices[face1], t3m.ZeroSubsimplices[v]] for v in edge1)
235
+ l_e -= sum(l_star[tet1, t3m.TwoSubsimplices[face1], t3m.ZeroSubsimplices[v]] for v in edge1)
236
+ mvar = M if m_e > 0 else m
237
+ lvar = L if l_e > 0 else l
238
+ dep_var = var(tet2, edge2)
239
+ in_terms_of_indep_vars_data[dep_var] = (sign, m_e, l_e, var(tet0, edge0))
240
+ in_terms_of_indep_vars[dep_var] = sign*(mvar**abs(m_e))*(lvar**abs(l_e))*indep_var
241
+
242
+ tet_vars = [in_terms_of_indep_vars[v] for v in tet_vars]
243
+ rels = [R(first_var_name) - 1, M*m - 1, L*l - 1]
244
+ for tet in range(n):
245
+ a, b, c, d, e, f = tet_vars[6*tet:6*(tet+1)]
246
+ rels.append(simplify_equation(c*d + a*f - b*e))
247
+
248
+ # These last equations ensure the ptolemy coordinates are nonzero.
249
+ # For larger numbers of tetrahedra, this appears to make computing
250
+ # Groebner basis much faster even though there are extra variables
251
+ # compared the approach where one uses a single variable.
252
+
253
+ if nonzero_cond:
254
+ for v in independent_vars:
255
+ rels.append(R(v) * R(v.swapcase()) - 1)
256
+
257
+ if return_full_var_dict == 'data':
258
+ return R.ideal(rels), in_terms_of_indep_vars_data
259
+ if return_full_var_dict:
260
+ return R.ideal(rels), in_terms_of_indep_vars
261
+ else:
262
+ return R.ideal(rels)
263
+
264
+
265
+ def apoly(manifold, rational_coeff=False, method='sage'):
266
+ """
267
+ Computes the SL(2, C) version of the A-polynomial starting from
268
+ the extended Ptolemy variety.
269
+
270
+ By default, uses Sage (which is to say Singular) to eliminate
271
+ variables. Surprisingly, Macaulay2 is *much* slower.
272
+
273
+ sage: M = Manifold('m003')
274
+ sage: I = apoly(M)
275
+ sage: I.gens()
276
+ [M^4*L^2 + M^3*L^2 - M*L^4 - 2*M^2*L^2 - M^3 + M*L^2 + L^2]
277
+ """
278
+ I = extended_ptolemy_equations(manifold)
279
+ R = I.ring()
280
+ if rational_coeff is False:
281
+ F = GF(31991)
282
+ R = R.change_ring(F)
283
+ I = I.change_ring(R)
284
+ to_elim = [R(x) for x in R.variable_names() if x not in ['M', 'L']]
285
+ if method == 'sage':
286
+ return I.elimination_ideal(to_elim)
287
+ elif method == 'M2':
288
+ from sage.all import macaulay2
289
+ I_m2 = macaulay2(I)
290
+ return I_m2.eliminate('{' + repr(to_elim)[1:-1] + '}').to_sage()
291
+ else:
292
+ raise ValueError("method flag should be in ['sage', 'M2']")
293
+
294
+
295
+ def sample_apoly_points_via_giac_rur(manifold, n):
296
+ import giac_rur
297
+ I = extended_ptolemy_equations(manifold)
298
+ R = I.ring()
299
+ p = cyclotomic_polynomial(n, var=R('M'))
300
+ I = I + [p]
301
+ return giac_rur.rational_univariate_representation(I)
302
+
303
+ def ptolemy_ideal_for_filled(manifold, nonzero_cond=True, return_full_var_dict=False, notation = 'short'):
304
+ assert manifold.cusp_info('is_complete') == [False]
305
+ a, b = [int(x) for x in manifold.cusp_info(0)['filling']]
306
+ I, var_dict = extended_ptolemy_equations(
307
+ manifold, nonzero_cond=nonzero_cond,
308
+ return_full_var_dict = True if not return_full_var_dict else return_full_var_dict,
309
+ notation = notation)
310
+ R = I.ring()
311
+ if (a, b) == (1, 0):
312
+ new_gens = [p.subs(M=1, m=1) for p in I.gens()] + [R('M - 1'), R('m - 1')]
313
+ I = R.ideal([p for p in new_gens if p != 0])
314
+ else:
315
+ mvar = R('M') if a > 0 else R('m')
316
+ lvar = R('l') if b > 0 else R('L')
317
+ I = I + [mvar**abs(a) - lvar**abs(b)]
318
+ if return_full_var_dict:
319
+ return I, var_dict
320
+ else:
321
+ return I
322
+
323
+ def rur_for_dehn_filling(manifold):
324
+ import giac_rur
325
+ I = ptolemy_ideal_for_filled(manifold)
326
+ return giac_rur.rational_univariate_representation(I)
327
+
328
+ def test_as_cusped(manifold):
329
+ import giac_rur
330
+ for obs in manifold.ptolemy_generalized_obstruction_classes(2):
331
+ I = extended_ptolemy_equations(manifold, obs)
332
+ R = I.ring()
333
+ M, L = R('M'), R('L')
334
+ I = I + [M - 1, L - 1]
335
+ if I.dimension() == 0:
336
+ print(giac_rur.rational_univariate_representation(I))
337
+
338
+ def test_direct(manifold):
339
+ import giac_rur
340
+ for obs in manifold.ptolemy_generalized_obstruction_classes(2):
341
+ I = manifold.ptolemy_variety(2, obs).ideal_with_non_zero_condition
342
+ if I.dimension() == 0:
343
+ print(giac_rur.rational_univariate_representation(I))
344
+
345
+
346
+ def clean_complex(z, epsilon=1e-14):
347
+ r, i = abs(z.real), abs(z.imag)
348
+ if r < epsilon and i < epsilon:
349
+ return 0.0
350
+ elif r < epsilon:
351
+ ans = z.imag*1j
352
+ elif i < epsilon:
353
+ ans = z.real
354
+ else:
355
+ ans = z
356
+ assert abs(z - ans) < epsilon
357
+ return ans
358
+
359
+ def shapes_of_SL2C_reps_for_filled(manifold, phc_solver=None):
360
+ """
361
+ Use CyPHC to find the shapes corresponding to SL2C representations
362
+ of the given closed manifold, as well as those which are
363
+ boundary-parabolic with respect to the Dehn-filling description.
364
+
365
+ sage: M = Manifold('m006(-5, 1)')
366
+ sage: shape_sets = shapes_of_SL2C_reps_for_filled(M)
367
+ sage: len(shape_sets)
368
+ 24
369
+ sage: max(shapes['err'] for shapes in shape_sets) < 1e-13
370
+ True
371
+ """
372
+ if phc_solver is None:
373
+ import phc_wrapper
374
+ phc_solver = phc_wrapper.phc_direct
375
+ n = manifold.num_tetrahedra()
376
+ I, var_dict = ptolemy_ideal_for_filled(manifold,
377
+ nonzero_cond=False, return_full_var_dict=True)
378
+ sols = phc_solver(I)
379
+ vars = I.ring().gens()
380
+ ans = []
381
+ for sol in sols:
382
+ indep_values = {v:sol[repr(v)] for v in vars}
383
+ sol_dict = {v:poly.subs(indep_values) for v, poly in var_dict.items()}
384
+ shape_dict = {'M':sol_dict['M'], 'L':sol_dict['L']}
385
+ for i in range(n):
386
+ i = repr(i)
387
+ top = sol_dict['b' + i]*sol_dict['e' + i]
388
+ bottom = sol_dict['c' + i]*sol_dict['d' + i]
389
+ shape_dict['z' + i] = clean_complex(top/bottom)
390
+
391
+ for attr in ['err', 'rco', 'res', 'mult']:
392
+ shape_dict[attr] = sol[attr]
393
+ ans.append(shape_dict)
394
+ return ans
395
+
396
+
397
+ def doctest_globals():
398
+ import snappy
399
+ return {'Manifold': snappy.Manifold}
400
+
401
+
402
+ if __name__ == '__main__':
403
+ from snappy.sage_helper import doctest_modules
404
+ import sys
405
+ current_module = sys.modules[__name__]
406
+ doctest_modules([current_module], extraglobs=doctest_globals())
@@ -0,0 +1,43 @@
1
+ """
2
+
3
+ Giac [1] is included in Sage 6.8 (July 2015) and newer with Sage
4
+ providing a pexpect interpreter interface. Additionally, there is a
5
+ Cython-based wrapper for Giac [2] with a Sage-specific incarnation [3]
6
+ which is installable as an optional Sage spkg::
7
+
8
+ sage -i giacpy_sage
9
+
10
+ This module is to make it easy to access a version of Giac from within
11
+ Sage, preferring the Cython-based wrapper if available.
12
+
13
+ [1] https://www-fourier.ujf-grenoble.fr/~parisse/giac.html
14
+ [2] https://pypi.org/project/giacpy
15
+ [3] https://gitlab.math.univ-paris-diderot.fr/han/giacpy-sage
16
+
17
+ """
18
+
19
+ from snappy.sage_helper import _within_sage
20
+
21
+ giac = None
22
+ have_giac = False
23
+ have_giacpy = False
24
+
25
+ if _within_sage:
26
+ try:
27
+ from giacpy_sage import libgiac as giac
28
+ have_giac = have_giacpy = True
29
+ except ImportError:
30
+ # Older versions of giacpy_sage were called giacpy
31
+ try:
32
+ from giacpy import libgiac as giac
33
+ have_giac = have_giacpy = True
34
+ except ImportError:
35
+ try:
36
+ # Fallback to pexpect interface.
37
+ from sage.all import giac
38
+ have_giac = True
39
+ have_giacpy = False
40
+ except ImportError as e:
41
+ raise ImportError(e.args[0] +
42
+ 'Probably your version of SageMath is too old '
43
+ 'to ship with Giac.')
@@ -0,0 +1,129 @@
1
+ """
2
+ Sage convenience wrapper for Giac's rational univariate representation
3
+ functionality.
4
+ """
5
+
6
+ from sage.all import QQ, PolynomialRing, NumberField
7
+ from .giac_helper import giac
8
+
9
+ # The main function of this file is:
10
+
11
+ def rational_univariate_representation(ideal):
12
+ """
13
+ Suppose an ideal I in QQ[x_1,...,x_n] is 0 dimensional, and we
14
+ want to describe all the points of the finite set V(I) in CC^n. A
15
+ rational univariate representation (RUR) of V(I), is a collection
16
+ of univariate polynomials h, g_0, g_1, ... , g_n in QQ[t] where
17
+ deg(h) = #V(I) and deg(g_i) < deg(h) such that the points of V(I)
18
+ correspond precisely to
19
+
20
+ (g_1(z)/g_0(z), (g_2(z)/g_0(z), ... (g_n(z)/g_0(z))
21
+
22
+ where z in CC is a root of h.
23
+
24
+ In this variant, we factor h into irreducibles return each part of
25
+ the RUR individually.
26
+
27
+ Example:
28
+
29
+ sage: R = PolynomialRing(QQ, ['x', 'y', 'z'])
30
+ sage: x, y, z = R.gens()
31
+ sage: I = R.ideal([x + y + z*z, x*y*z - 3, x*x + y*y + z*z - 2])
32
+ sage: ans = rational_univariate_representation(I)
33
+ sage: len(ans)
34
+ 1
35
+ sage: K, rep, mult = ans[0]
36
+ sage: mult
37
+ 1
38
+ sage: h = K.polynomial(); h
39
+ x^10 - 2*x^9 - 4*x^8 + 6*x^7 + 7*x^6 - 13*x^5 - 17/2*x^4 + 36*x^3 + 63/2*x^2 + 81/2
40
+ sage: rep[y]
41
+ a
42
+ sage: 1215 * rep[x] # Here g0 = 1215
43
+ 8*a^9 + 8*a^8 - 8*a^7 - 246*a^6 + 128*a^5 + 550*a^4 - 308*a^3 - 636*a^2 + 639*a + 1917
44
+ sage: I.subs(rep).is_zero()
45
+ True
46
+
47
+ Here is an example using a Ptolemy variety:
48
+
49
+ sage: M = Manifold('t00000')
50
+ sage: obs = M.ptolemy_generalized_obstruction_classes(2)[1]
51
+ sage: V = M.ptolemy_variety(2, obs)
52
+ sage: I = V.ideal_with_non_zero_condition
53
+ sage: ans = rational_univariate_representation(I)
54
+ sage: ans[0][0].polynomial()
55
+ x^8 - 4*x^7 - 2*x^6 + 14*x^5 + 14*x^4 - 7*x^3 - 13*x^2 - x + 5
56
+
57
+ For more, see:
58
+
59
+ https://en.wikipedia.org/wiki/System_of_polynomial_equations#Rational_univariate_representation
60
+
61
+ """
62
+ R = ideal.ring()
63
+
64
+ # A "feature" introduced in Sage-9.4 is that
65
+ # ideal.gens() vs R.gens()
66
+ # returns
67
+ # a <class 'sage.rings.polynomial.multi_polynomial_sequence.PolynomialSequence_generic’>
68
+ # vs a
69
+ # <class 'sage.rings.polynomial.multi_polynomial_libsingular.MPolynomial_libsingular’>
70
+ # so that giac(_) turns the variable x into x vs sageVARx.
71
+ #
72
+ # And giving "gbasis([x],[sageVARx],rur)" instead of "gbasis([x],[x],rur)" doesn't
73
+ # produce the desired result...
74
+ #
75
+ # Thus, we have the following work-around:
76
+ good_vars = R.ideal(R.gens()).gens()
77
+ J = giac(ideal.gens())
78
+ rur = J.gbasis(good_vars, 'rur')
79
+ # Yikes: giacpy_sage vs the giac interface give different types.
80
+ # So using repr.
81
+ if repr(rur[0]) != 'rur':
82
+ raise ValueError(('Could not find RUR, got %r instead. '
83
+ 'Is the variety 0-dimensional?') % rur[0])
84
+
85
+ # [x.sage() for rur[4:]] doesn't work with the giac interface (it tries
86
+ # to convert the slicing to a giac expression that giac does not understand)
87
+ #
88
+ # However, rur.sage()[0] gave some trouble, too.
89
+ #
90
+ # So we convert with .sage() after having checked we have rur, but before
91
+ # we inspect the other items.
92
+ rur = rur.sage()
93
+
94
+ # Defining polynomial of number field, as a symbolic expression.
95
+ p = rur[2]
96
+ assert len(p.variables()) == 1
97
+ v = p.variables()[0]
98
+
99
+ S = PolynomialRing(QQ, repr(v))
100
+ T = PolynomialRing(QQ, 'x')
101
+ p = T(S(p))
102
+ p = p/p.leading_coefficient()
103
+
104
+ ans = []
105
+ for q, e in p.factor():
106
+ K = NumberField(q, 'a')
107
+
108
+ def toK(f):
109
+ return K(T(S(f)))
110
+
111
+ denom = toK(rur[3])
112
+ rep = [toK(f)/denom for f in rur[4:]]
113
+ sub_dict = dict(zip(R.gens(), rep))
114
+ assert all(g.subs(sub_dict) == 0 for g in ideal.gens())
115
+ ans.append((K, sub_dict, e))
116
+
117
+ return ans
118
+
119
+
120
+ def doctest_globals():
121
+ import snappy
122
+ return {'Manifold': snappy.Manifold}
123
+
124
+
125
+ if __name__ == '__main__':
126
+ from snappy.sage_helper import doctest_modules
127
+ import sys
128
+ current_module = sys.modules[__name__]
129
+ doctest_modules([current_module], extraglobs=doctest_globals())
@@ -0,0 +1,46 @@
1
+ import snappy
2
+ from sage.all import ZZ, PolynomialRing
3
+
4
+ def make_rect_eqn(R, A, B, c, vars_per_tet=1):
5
+ n = len(A)
6
+ R_vars = R.gens()
7
+ if vars_per_tet == 2:
8
+ Z, W = R_vars[:n], R_vars[n:]
9
+ else:
10
+ Z = R_vars
11
+ left, right = R(1), R(1)
12
+ for i, a in enumerate(A):
13
+ term = Z[i]**abs(a)
14
+ if a > 0:
15
+ left *= term
16
+ elif a < 0:
17
+ right *= term
18
+ for i, b in enumerate(B):
19
+ if vars_per_tet==1:
20
+ term = (1 - Z[i])**abs(b)
21
+ else:
22
+ term = W[i]**abs(b)
23
+ if b > 0:
24
+ left *= term
25
+ elif b < 0:
26
+ right *= term
27
+ return left - c*right
28
+
29
+ def gluing_variety_ideal(manifold, vars_per_tet=1):
30
+ manifold = manifold.copy()
31
+ n = manifold.num_tetrahedra()
32
+ var_names = ['z%d' % i for i in range(n)]
33
+ ideal_gens = []
34
+ if vars_per_tet!=1:
35
+ assert vars_per_tet==2
36
+ var_names += ['w%d' % i for i in range(n)]
37
+ R = PolynomialRing(ZZ, var_names)
38
+ if vars_per_tet==2:
39
+ ideal_gens += [R('z%d + w%d - 1' % (i, i)) for i in range(n)]
40
+ eqn_data = snappy.snap.shapes.enough_gluing_equations(manifold)
41
+ ideal_gens += [make_rect_eqn(R, A, B, c, vars_per_tet) for A, B, c in eqn_data]
42
+ return R.ideal(ideal_gens)
43
+
44
+
45
+
46
+