sigima 0.0.1.dev0__py3-none-any.whl → 1.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- sigima/__init__.py +142 -2
- sigima/client/__init__.py +105 -0
- sigima/client/base.py +780 -0
- sigima/client/remote.py +469 -0
- sigima/client/stub.py +814 -0
- sigima/client/utils.py +90 -0
- sigima/config.py +444 -0
- sigima/data/logo/Sigima.svg +135 -0
- sigima/data/tests/annotations.json +798 -0
- sigima/data/tests/curve_fitting/exponential_fit.txt +511 -0
- sigima/data/tests/curve_fitting/gaussian_fit.txt +100 -0
- sigima/data/tests/curve_fitting/piecewiseexponential_fit.txt +1022 -0
- sigima/data/tests/curve_fitting/polynomial_fit.txt +100 -0
- sigima/data/tests/curve_fitting/twohalfgaussian_fit.txt +1000 -0
- sigima/data/tests/curve_formats/bandwidth.txt +201 -0
- sigima/data/tests/curve_formats/boxcar.npy +0 -0
- sigima/data/tests/curve_formats/datetime.txt +1001 -0
- sigima/data/tests/curve_formats/dynamic_parameters.txt +4000 -0
- sigima/data/tests/curve_formats/fw1e2.txt +301 -0
- sigima/data/tests/curve_formats/fwhm.txt +319 -0
- sigima/data/tests/curve_formats/multiple_curves.csv +29 -0
- sigima/data/tests/curve_formats/noised_saw.mat +0 -0
- sigima/data/tests/curve_formats/oscilloscope.csv +111 -0
- sigima/data/tests/curve_formats/other/other2/recursive2.txt +5 -0
- sigima/data/tests/curve_formats/other/recursive1.txt +5 -0
- sigima/data/tests/curve_formats/paracetamol.npy +0 -0
- sigima/data/tests/curve_formats/paracetamol.txt +1010 -0
- sigima/data/tests/curve_formats/paracetamol_dx_dy.csv +1000 -0
- sigima/data/tests/curve_formats/paracetamol_dy.csv +1001 -0
- sigima/data/tests/curve_formats/pulse1.npy +0 -0
- sigima/data/tests/curve_formats/pulse2.npy +0 -0
- sigima/data/tests/curve_formats/simple.txt +5 -0
- sigima/data/tests/curve_formats/spectrum.mca +2139 -0
- sigima/data/tests/curve_formats/square2.npy +0 -0
- sigima/data/tests/curve_formats/step.npy +0 -0
- sigima/data/tests/fabry-perot1.jpg +0 -0
- sigima/data/tests/fabry-perot2.jpg +0 -0
- sigima/data/tests/flower.npy +0 -0
- sigima/data/tests/image_formats/NF 180338201.scor-data +11003 -0
- sigima/data/tests/image_formats/binary_image.npy +0 -0
- sigima/data/tests/image_formats/binary_image.png +0 -0
- sigima/data/tests/image_formats/centroid_test.npy +0 -0
- sigima/data/tests/image_formats/coordinated_text/complex_image.txt +10011 -0
- sigima/data/tests/image_formats/coordinated_text/complex_ref_image.txt +10010 -0
- sigima/data/tests/image_formats/coordinated_text/image.txt +15 -0
- sigima/data/tests/image_formats/coordinated_text/image2.txt +14 -0
- sigima/data/tests/image_formats/coordinated_text/image_no_unit_no_label.txt +14 -0
- sigima/data/tests/image_formats/coordinated_text/image_with_nan.txt +15 -0
- sigima/data/tests/image_formats/coordinated_text/image_with_unit.txt +14 -0
- sigima/data/tests/image_formats/fiber.csv +480 -0
- sigima/data/tests/image_formats/fiber.jpg +0 -0
- sigima/data/tests/image_formats/fiber.png +0 -0
- sigima/data/tests/image_formats/fiber.txt +480 -0
- sigima/data/tests/image_formats/gaussian_spot_with_noise.npy +0 -0
- sigima/data/tests/image_formats/mr-brain.dcm +0 -0
- sigima/data/tests/image_formats/noised_gaussian.mat +0 -0
- sigima/data/tests/image_formats/sif_reader/nd_lum_image_no_glue.sif +0 -0
- sigima/data/tests/image_formats/sif_reader/raman1.sif +0 -0
- sigima/data/tests/image_formats/tiling.txt +10 -0
- sigima/data/tests/image_formats/uint16.tiff +0 -0
- sigima/data/tests/image_formats/uint8.tiff +0 -0
- sigima/data/tests/laser_beam/TEM00_z_13.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_18.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_23.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_30.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_35.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_40.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_45.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_50.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_55.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_60.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_65.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_70.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_75.jpg +0 -0
- sigima/data/tests/laser_beam/TEM00_z_80.jpg +0 -0
- sigima/enums.py +195 -0
- sigima/io/__init__.py +123 -0
- sigima/io/base.py +311 -0
- sigima/io/common/__init__.py +5 -0
- sigima/io/common/basename.py +164 -0
- sigima/io/common/converters.py +189 -0
- sigima/io/common/objmeta.py +181 -0
- sigima/io/common/textreader.py +58 -0
- sigima/io/convenience.py +157 -0
- sigima/io/enums.py +17 -0
- sigima/io/ftlab.py +395 -0
- sigima/io/image/__init__.py +9 -0
- sigima/io/image/base.py +177 -0
- sigima/io/image/formats.py +1016 -0
- sigima/io/image/funcs.py +414 -0
- sigima/io/signal/__init__.py +9 -0
- sigima/io/signal/base.py +129 -0
- sigima/io/signal/formats.py +290 -0
- sigima/io/signal/funcs.py +723 -0
- sigima/objects/__init__.py +260 -0
- sigima/objects/base.py +937 -0
- sigima/objects/image/__init__.py +88 -0
- sigima/objects/image/creation.py +556 -0
- sigima/objects/image/object.py +524 -0
- sigima/objects/image/roi.py +904 -0
- sigima/objects/scalar/__init__.py +57 -0
- sigima/objects/scalar/common.py +215 -0
- sigima/objects/scalar/geometry.py +502 -0
- sigima/objects/scalar/table.py +784 -0
- sigima/objects/shape.py +290 -0
- sigima/objects/signal/__init__.py +133 -0
- sigima/objects/signal/constants.py +27 -0
- sigima/objects/signal/creation.py +1428 -0
- sigima/objects/signal/object.py +444 -0
- sigima/objects/signal/roi.py +274 -0
- sigima/params.py +405 -0
- sigima/proc/__init__.py +96 -0
- sigima/proc/base.py +381 -0
- sigima/proc/decorator.py +330 -0
- sigima/proc/image/__init__.py +513 -0
- sigima/proc/image/arithmetic.py +335 -0
- sigima/proc/image/base.py +260 -0
- sigima/proc/image/detection.py +519 -0
- sigima/proc/image/edges.py +329 -0
- sigima/proc/image/exposure.py +406 -0
- sigima/proc/image/extraction.py +458 -0
- sigima/proc/image/filtering.py +219 -0
- sigima/proc/image/fourier.py +147 -0
- sigima/proc/image/geometry.py +661 -0
- sigima/proc/image/mathops.py +340 -0
- sigima/proc/image/measurement.py +195 -0
- sigima/proc/image/morphology.py +155 -0
- sigima/proc/image/noise.py +107 -0
- sigima/proc/image/preprocessing.py +182 -0
- sigima/proc/image/restoration.py +235 -0
- sigima/proc/image/threshold.py +217 -0
- sigima/proc/image/transformations.py +393 -0
- sigima/proc/signal/__init__.py +376 -0
- sigima/proc/signal/analysis.py +206 -0
- sigima/proc/signal/arithmetic.py +551 -0
- sigima/proc/signal/base.py +262 -0
- sigima/proc/signal/extraction.py +60 -0
- sigima/proc/signal/features.py +310 -0
- sigima/proc/signal/filtering.py +484 -0
- sigima/proc/signal/fitting.py +276 -0
- sigima/proc/signal/fourier.py +259 -0
- sigima/proc/signal/mathops.py +420 -0
- sigima/proc/signal/processing.py +580 -0
- sigima/proc/signal/stability.py +175 -0
- sigima/proc/title_formatting.py +227 -0
- sigima/proc/validation.py +272 -0
- sigima/tests/__init__.py +7 -0
- sigima/tests/common/__init__.py +0 -0
- sigima/tests/common/arithmeticparam_unit_test.py +26 -0
- sigima/tests/common/basename_unit_test.py +126 -0
- sigima/tests/common/client_unit_test.py +412 -0
- sigima/tests/common/converters_unit_test.py +77 -0
- sigima/tests/common/decorator_unit_test.py +176 -0
- sigima/tests/common/examples_unit_test.py +104 -0
- sigima/tests/common/kernel_normalization_unit_test.py +242 -0
- sigima/tests/common/roi_basic_unit_test.py +73 -0
- sigima/tests/common/roi_geometry_unit_test.py +171 -0
- sigima/tests/common/scalar_builder_unit_test.py +142 -0
- sigima/tests/common/scalar_unit_test.py +991 -0
- sigima/tests/common/shape_unit_test.py +183 -0
- sigima/tests/common/stat_unit_test.py +138 -0
- sigima/tests/common/title_formatting_unit_test.py +338 -0
- sigima/tests/common/tools_coordinates_unit_test.py +60 -0
- sigima/tests/common/transformations_unit_test.py +178 -0
- sigima/tests/common/validation_unit_test.py +205 -0
- sigima/tests/conftest.py +129 -0
- sigima/tests/data.py +998 -0
- sigima/tests/env.py +280 -0
- sigima/tests/guiutils.py +163 -0
- sigima/tests/helpers.py +532 -0
- sigima/tests/image/__init__.py +28 -0
- sigima/tests/image/binning_unit_test.py +128 -0
- sigima/tests/image/blob_detection_unit_test.py +312 -0
- sigima/tests/image/centroid_unit_test.py +170 -0
- sigima/tests/image/check_2d_array_unit_test.py +63 -0
- sigima/tests/image/contour_unit_test.py +172 -0
- sigima/tests/image/convolution_unit_test.py +178 -0
- sigima/tests/image/datatype_unit_test.py +67 -0
- sigima/tests/image/edges_unit_test.py +155 -0
- sigima/tests/image/enclosingcircle_unit_test.py +88 -0
- sigima/tests/image/exposure_unit_test.py +223 -0
- sigima/tests/image/fft2d_unit_test.py +189 -0
- sigima/tests/image/filtering_unit_test.py +166 -0
- sigima/tests/image/geometry_unit_test.py +654 -0
- sigima/tests/image/hough_circle_unit_test.py +147 -0
- sigima/tests/image/imageobj_unit_test.py +737 -0
- sigima/tests/image/morphology_unit_test.py +71 -0
- sigima/tests/image/noise_unit_test.py +57 -0
- sigima/tests/image/offset_correction_unit_test.py +72 -0
- sigima/tests/image/operation_unit_test.py +518 -0
- sigima/tests/image/peak2d_limits_unit_test.py +41 -0
- sigima/tests/image/peak2d_unit_test.py +133 -0
- sigima/tests/image/profile_unit_test.py +159 -0
- sigima/tests/image/projections_unit_test.py +121 -0
- sigima/tests/image/restoration_unit_test.py +141 -0
- sigima/tests/image/roi2dparam_unit_test.py +53 -0
- sigima/tests/image/roi_advanced_unit_test.py +588 -0
- sigima/tests/image/roi_grid_unit_test.py +279 -0
- sigima/tests/image/spectrum2d_unit_test.py +40 -0
- sigima/tests/image/threshold_unit_test.py +91 -0
- sigima/tests/io/__init__.py +0 -0
- sigima/tests/io/addnewformat_unit_test.py +125 -0
- sigima/tests/io/convenience_funcs_unit_test.py +470 -0
- sigima/tests/io/coordinated_text_format_unit_test.py +495 -0
- sigima/tests/io/datetime_csv_unit_test.py +198 -0
- sigima/tests/io/imageio_formats_test.py +41 -0
- sigima/tests/io/ioregistry_unit_test.py +69 -0
- sigima/tests/io/objmeta_unit_test.py +87 -0
- sigima/tests/io/readobj_unit_test.py +130 -0
- sigima/tests/io/readwriteobj_unit_test.py +67 -0
- sigima/tests/signal/__init__.py +0 -0
- sigima/tests/signal/analysis_unit_test.py +135 -0
- sigima/tests/signal/check_1d_arrays_unit_test.py +169 -0
- sigima/tests/signal/convolution_unit_test.py +404 -0
- sigima/tests/signal/datetime_unit_test.py +176 -0
- sigima/tests/signal/fft1d_unit_test.py +303 -0
- sigima/tests/signal/filters_unit_test.py +403 -0
- sigima/tests/signal/fitting_unit_test.py +929 -0
- sigima/tests/signal/fwhm_unit_test.py +111 -0
- sigima/tests/signal/noise_unit_test.py +128 -0
- sigima/tests/signal/offset_correction_unit_test.py +34 -0
- sigima/tests/signal/operation_unit_test.py +489 -0
- sigima/tests/signal/peakdetection_unit_test.py +145 -0
- sigima/tests/signal/processing_unit_test.py +657 -0
- sigima/tests/signal/pulse/__init__.py +112 -0
- sigima/tests/signal/pulse/crossing_times_unit_test.py +123 -0
- sigima/tests/signal/pulse/plateau_detection_unit_test.py +102 -0
- sigima/tests/signal/pulse/pulse_unit_test.py +1824 -0
- sigima/tests/signal/roi_advanced_unit_test.py +392 -0
- sigima/tests/signal/signalobj_unit_test.py +603 -0
- sigima/tests/signal/stability_unit_test.py +431 -0
- sigima/tests/signal/uncertainty_unit_test.py +611 -0
- sigima/tests/vistools.py +1030 -0
- sigima/tools/__init__.py +59 -0
- sigima/tools/checks.py +290 -0
- sigima/tools/coordinates.py +308 -0
- sigima/tools/datatypes.py +26 -0
- sigima/tools/image/__init__.py +97 -0
- sigima/tools/image/detection.py +451 -0
- sigima/tools/image/exposure.py +77 -0
- sigima/tools/image/extraction.py +48 -0
- sigima/tools/image/fourier.py +260 -0
- sigima/tools/image/geometry.py +190 -0
- sigima/tools/image/preprocessing.py +165 -0
- sigima/tools/signal/__init__.py +86 -0
- sigima/tools/signal/dynamic.py +254 -0
- sigima/tools/signal/features.py +135 -0
- sigima/tools/signal/filtering.py +171 -0
- sigima/tools/signal/fitting.py +1171 -0
- sigima/tools/signal/fourier.py +466 -0
- sigima/tools/signal/interpolation.py +70 -0
- sigima/tools/signal/peakdetection.py +126 -0
- sigima/tools/signal/pulse.py +1626 -0
- sigima/tools/signal/scaling.py +50 -0
- sigima/tools/signal/stability.py +258 -0
- sigima/tools/signal/windowing.py +90 -0
- sigima/worker.py +79 -0
- sigima-1.0.0.dist-info/METADATA +233 -0
- sigima-1.0.0.dist-info/RECORD +262 -0
- {sigima-0.0.1.dev0.dist-info → sigima-1.0.0.dist-info}/licenses/LICENSE +29 -29
- sigima-0.0.1.dev0.dist-info/METADATA +0 -60
- sigima-0.0.1.dev0.dist-info/RECORD +0 -6
- {sigima-0.0.1.dev0.dist-info → sigima-1.0.0.dist-info}/WHEEL +0 -0
- {sigima-0.0.1.dev0.dist-info → sigima-1.0.0.dist-info}/top_level.txt +0 -0
sigima/proc/decorator.py
ADDED
|
@@ -0,0 +1,330 @@
|
|
|
1
|
+
# Copyright (c) DataLab Platform Developers, BSD 3-Clause license, see LICENSE file.
|
|
2
|
+
|
|
3
|
+
"""
|
|
4
|
+
.. Computation function decorator and utilities
|
|
5
|
+
(see parent package :mod:`sigima.computation`)
|
|
6
|
+
"""
|
|
7
|
+
|
|
8
|
+
from __future__ import annotations
|
|
9
|
+
|
|
10
|
+
import dataclasses
|
|
11
|
+
import functools
|
|
12
|
+
import importlib
|
|
13
|
+
import inspect
|
|
14
|
+
import os.path as osp
|
|
15
|
+
import pkgutil
|
|
16
|
+
import sys
|
|
17
|
+
import typing
|
|
18
|
+
from typing import Callable, Literal, TypeVar
|
|
19
|
+
|
|
20
|
+
import guidata.dataset as gds
|
|
21
|
+
import makefun
|
|
22
|
+
|
|
23
|
+
if sys.version_info >= (3, 10):
|
|
24
|
+
# Use ParamSpec from typing module in Python 3.10+
|
|
25
|
+
from typing import ParamSpec
|
|
26
|
+
else:
|
|
27
|
+
# Use ParamSpec from typing_extensions module in Python < 3.10
|
|
28
|
+
from typing_extensions import ParamSpec
|
|
29
|
+
|
|
30
|
+
# NOTE: Parameter classes should NOT be included in __all__ to avoid Sphinx
|
|
31
|
+
# cross-reference conflicts. All parameter classes are re-exported through
|
|
32
|
+
# sigima.params module which serves as the single source of truth for the
|
|
33
|
+
# public API. Only utility functions should be exported from this module.
|
|
34
|
+
__all__ = [
|
|
35
|
+
"computation_function",
|
|
36
|
+
"find_computation_functions",
|
|
37
|
+
"get_computation_metadata",
|
|
38
|
+
"is_computation_function",
|
|
39
|
+
]
|
|
40
|
+
|
|
41
|
+
# Marker attribute used by @computation_function and introspection
|
|
42
|
+
COMPUTATION_METADATA_ATTR = "__computation_function_metadata"
|
|
43
|
+
|
|
44
|
+
P = ParamSpec("P")
|
|
45
|
+
R = TypeVar("R")
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
@dataclasses.dataclass(frozen=True)
|
|
49
|
+
class ComputationMetadata:
|
|
50
|
+
"""Metadata for a computation function.
|
|
51
|
+
|
|
52
|
+
Attributes:
|
|
53
|
+
name: The name of the computation function.
|
|
54
|
+
description: A description or docstring for the computation function.
|
|
55
|
+
"""
|
|
56
|
+
|
|
57
|
+
name: str
|
|
58
|
+
description: str
|
|
59
|
+
|
|
60
|
+
|
|
61
|
+
def _make_computation_wrapper(
|
|
62
|
+
f: Callable,
|
|
63
|
+
ds_cls: type,
|
|
64
|
+
ds_param: inspect.Parameter,
|
|
65
|
+
params: list,
|
|
66
|
+
ds_items: list,
|
|
67
|
+
new_sig: inspect.Signature,
|
|
68
|
+
signature_info: str,
|
|
69
|
+
metadata: ComputationMetadata,
|
|
70
|
+
) -> Callable:
|
|
71
|
+
"""
|
|
72
|
+
Create a computation function wrapper supporting both DataSet and expanded-kwarg
|
|
73
|
+
signatures.
|
|
74
|
+
|
|
75
|
+
Args:
|
|
76
|
+
f: The original function.
|
|
77
|
+
ds_cls: The DataSet class type.
|
|
78
|
+
ds_param: The DataSet parameter in the signature.
|
|
79
|
+
params: The full function signature parameters.
|
|
80
|
+
ds_items: The DataSet's items (parameters).
|
|
81
|
+
new_sig: The explicit signature (with kwargs) to expose.
|
|
82
|
+
signature_info: The Sphinx docstring note to append.
|
|
83
|
+
metadata: ComputationMetadata to attach to the wrapper.
|
|
84
|
+
|
|
85
|
+
Returns:
|
|
86
|
+
The wrapped function.
|
|
87
|
+
"""
|
|
88
|
+
|
|
89
|
+
@makefun.with_signature(new_sig)
|
|
90
|
+
@functools.wraps(f)
|
|
91
|
+
def wrapper(*args, **kwargs):
|
|
92
|
+
"""
|
|
93
|
+
Dispatch function supporting both DataSet parameter and expanded keyword
|
|
94
|
+
arguments.
|
|
95
|
+
|
|
96
|
+
Behavior:
|
|
97
|
+
- If a DataSet object is provided, it is always used and keyword arguments
|
|
98
|
+
for DataSet items are ignored.
|
|
99
|
+
- If no DataSet is provided, DataSet items are constructed from keyword
|
|
100
|
+
arguments.
|
|
101
|
+
|
|
102
|
+
Returns:
|
|
103
|
+
Result of the original computation function.
|
|
104
|
+
"""
|
|
105
|
+
ba = new_sig.bind(*args, **kwargs)
|
|
106
|
+
ba.apply_defaults()
|
|
107
|
+
ds_obj = ba.arguments.get(ds_param.name, None)
|
|
108
|
+
ds_item_names = set(item.get_name() for item in ds_items)
|
|
109
|
+
|
|
110
|
+
if isinstance(ds_obj, ds_cls):
|
|
111
|
+
# DataSet object provided: ignore any keyword arguments for its items
|
|
112
|
+
pass
|
|
113
|
+
else:
|
|
114
|
+
# DataSet instance not provided: build from keyword arguments
|
|
115
|
+
ds_kwargs = {
|
|
116
|
+
k: ba.arguments.pop(k)
|
|
117
|
+
for k in list(ba.arguments.keys())
|
|
118
|
+
if k in ds_item_names
|
|
119
|
+
}
|
|
120
|
+
ds_obj = ds_cls.create(**ds_kwargs)
|
|
121
|
+
|
|
122
|
+
# Build the final positional argument list for the original function
|
|
123
|
+
final_args = []
|
|
124
|
+
for p in params:
|
|
125
|
+
if p is ds_param:
|
|
126
|
+
final_args.append(ds_obj)
|
|
127
|
+
else:
|
|
128
|
+
final_args.append(ba.arguments.get(p.name, None))
|
|
129
|
+
return f(*final_args)
|
|
130
|
+
|
|
131
|
+
# Attach dynamic Sphinx docstring and signature
|
|
132
|
+
doc = f.__doc__ or ""
|
|
133
|
+
if not doc.endswith("\n"):
|
|
134
|
+
doc += "\n"
|
|
135
|
+
wrapper.__doc__ = doc + signature_info
|
|
136
|
+
wrapper.__signature__ = new_sig
|
|
137
|
+
setattr(wrapper, COMPUTATION_METADATA_ATTR, metadata)
|
|
138
|
+
return wrapper
|
|
139
|
+
|
|
140
|
+
|
|
141
|
+
def computation_function(
|
|
142
|
+
*,
|
|
143
|
+
name: typing.Optional[str] = None,
|
|
144
|
+
description: typing.Optional[str] = None,
|
|
145
|
+
) -> Callable[[Callable[P, R]], Callable[P, R]]:
|
|
146
|
+
"""
|
|
147
|
+
Decorator to mark a function as a Sigima computation function.
|
|
148
|
+
|
|
149
|
+
This decorator enables two calling conventions:
|
|
150
|
+
1. With a guidata DataSet object as a parameter (classic style).
|
|
151
|
+
2. With the DataSet items passed as individual keyword arguments (expanded style).
|
|
152
|
+
|
|
153
|
+
The decorator ensures:
|
|
154
|
+
- An explicit and informative function signature (including all DataSet items as
|
|
155
|
+
keyword arguments).
|
|
156
|
+
- A Sphinx-friendly docstring documenting both call styles.
|
|
157
|
+
- Pickle-compatibility (crucial for multiprocessing).
|
|
158
|
+
- Conflict detection if both DataSet instance and expanded keyword arguments are
|
|
159
|
+
used simultaneously.
|
|
160
|
+
|
|
161
|
+
Args:
|
|
162
|
+
name: Optional custom name for metadata.
|
|
163
|
+
description: Optional custom description or docstring.
|
|
164
|
+
|
|
165
|
+
Returns:
|
|
166
|
+
The decorated, enhanced computation function.
|
|
167
|
+
"""
|
|
168
|
+
|
|
169
|
+
def decorator(f: Callable[P, R]) -> Callable[P, R]:
|
|
170
|
+
# Gather signature and typing information
|
|
171
|
+
sig = inspect.signature(f)
|
|
172
|
+
params = list(sig.parameters.values())
|
|
173
|
+
try:
|
|
174
|
+
type_hints = typing.get_type_hints(f)
|
|
175
|
+
except Exception: # pylint: disable=broad-except
|
|
176
|
+
type_hints = {}
|
|
177
|
+
|
|
178
|
+
# Find DataSet parameter if any
|
|
179
|
+
ds_param = None
|
|
180
|
+
ds_cls = None
|
|
181
|
+
for p in params:
|
|
182
|
+
annot = type_hints.get(p.name, p.annotation)
|
|
183
|
+
if (
|
|
184
|
+
annot is not inspect.Signature.empty
|
|
185
|
+
and isinstance(annot, type)
|
|
186
|
+
and issubclass(annot, gds.DataSet)
|
|
187
|
+
and annot.__name__ not in ("SignalObj", "ImageObj")
|
|
188
|
+
):
|
|
189
|
+
ds_param = p
|
|
190
|
+
ds_cls = annot
|
|
191
|
+
break
|
|
192
|
+
|
|
193
|
+
# If a DataSet param is present, expand signature and docstring
|
|
194
|
+
if ds_cls is not None:
|
|
195
|
+
# Build signature exposing all DataSet items as keyword-only parameters
|
|
196
|
+
ds_items: list[gds.DataItem] = ds_cls._items # pylint: disable=W0212
|
|
197
|
+
item_names = [item.get_name() for item in ds_items]
|
|
198
|
+
items = []
|
|
199
|
+
for item in ds_items:
|
|
200
|
+
if item.get_name() not in [p.name for p in params]:
|
|
201
|
+
# Support ChoiceItem as Literal if available
|
|
202
|
+
if hasattr(gds, "ChoiceItem") and isinstance(item, gds.ChoiceItem):
|
|
203
|
+
choice_data = item.get_prop("data", "choices")
|
|
204
|
+
choices = [v[0] for v in choice_data]
|
|
205
|
+
item_type = Literal[tuple(choices)]
|
|
206
|
+
else:
|
|
207
|
+
item_type = item.type
|
|
208
|
+
items.append(
|
|
209
|
+
inspect.Parameter(
|
|
210
|
+
item.get_name(),
|
|
211
|
+
inspect.Parameter.KEYWORD_ONLY,
|
|
212
|
+
annotation=item_type,
|
|
213
|
+
default=item.get_default(),
|
|
214
|
+
)
|
|
215
|
+
)
|
|
216
|
+
# DataSet parameter remains positional-or-keyword, but optional
|
|
217
|
+
# (default=None)
|
|
218
|
+
base_params = []
|
|
219
|
+
for p in params:
|
|
220
|
+
if p is ds_param:
|
|
221
|
+
base_params.append(
|
|
222
|
+
inspect.Parameter(
|
|
223
|
+
p.name,
|
|
224
|
+
inspect.Parameter.POSITIONAL_OR_KEYWORD,
|
|
225
|
+
annotation=p.annotation,
|
|
226
|
+
default=None,
|
|
227
|
+
)
|
|
228
|
+
)
|
|
229
|
+
else:
|
|
230
|
+
base_params.append(p)
|
|
231
|
+
new_params = base_params + items
|
|
232
|
+
new_sig = sig.replace(parameters=new_params)
|
|
233
|
+
param_class_name = ds_cls.__name__
|
|
234
|
+
kwarg_example = ", ".join(f"{name}=..." for name in item_names)
|
|
235
|
+
# Sphinx-style docstring describing both call conventions
|
|
236
|
+
signature_info = (
|
|
237
|
+
f".. note::\n\n"
|
|
238
|
+
f" This computation function can be called in two ways:\n\n"
|
|
239
|
+
f" 1. With a parameter ``{param_class_name}`` object:\n\n"
|
|
240
|
+
f" .. code-block:: python\n\n"
|
|
241
|
+
f" param = {param_class_name}.create({kwarg_example})\n"
|
|
242
|
+
f" func(obj, param)\n\n"
|
|
243
|
+
f" 2. Or, with keyword arguments directly:\n\n"
|
|
244
|
+
f" .. code-block:: python\n\n"
|
|
245
|
+
f" func(obj, {kwarg_example})\n\n"
|
|
246
|
+
f" Both styles are fully supported and equivalent.\n\n"
|
|
247
|
+
)
|
|
248
|
+
metadata = ComputationMetadata(
|
|
249
|
+
name=name or f.__name__,
|
|
250
|
+
description=description or f.__doc__,
|
|
251
|
+
)
|
|
252
|
+
return _make_computation_wrapper(
|
|
253
|
+
f, ds_cls, ds_param, params, ds_items, new_sig, signature_info, metadata
|
|
254
|
+
)
|
|
255
|
+
|
|
256
|
+
# No DataSet parameter: simple passthrough
|
|
257
|
+
@functools.wraps(f)
|
|
258
|
+
def wrapper(*args, **kwargs):
|
|
259
|
+
return f(*args, **kwargs)
|
|
260
|
+
|
|
261
|
+
metadata = ComputationMetadata(
|
|
262
|
+
name=name or f.__name__,
|
|
263
|
+
description=description or f.__doc__,
|
|
264
|
+
)
|
|
265
|
+
setattr(wrapper, COMPUTATION_METADATA_ATTR, metadata)
|
|
266
|
+
return wrapper
|
|
267
|
+
|
|
268
|
+
return decorator
|
|
269
|
+
|
|
270
|
+
|
|
271
|
+
def is_computation_function(function: Callable) -> bool:
|
|
272
|
+
"""Check if a function is a Sigima computation function.
|
|
273
|
+
|
|
274
|
+
Args:
|
|
275
|
+
function: The function to check.
|
|
276
|
+
|
|
277
|
+
Returns:
|
|
278
|
+
True if the function is a Sigima computation function, False otherwise.
|
|
279
|
+
"""
|
|
280
|
+
return getattr(function, COMPUTATION_METADATA_ATTR, None) is not None
|
|
281
|
+
|
|
282
|
+
|
|
283
|
+
def get_computation_metadata(function: Callable) -> ComputationMetadata:
|
|
284
|
+
"""Get the metadata of a Sigima computation function.
|
|
285
|
+
|
|
286
|
+
Args:
|
|
287
|
+
function: The function to get metadata from.
|
|
288
|
+
|
|
289
|
+
Returns:
|
|
290
|
+
Computation function metadata.
|
|
291
|
+
|
|
292
|
+
Raises:
|
|
293
|
+
ValueError: If the function is not a Sigima computation function.
|
|
294
|
+
"""
|
|
295
|
+
metadata = getattr(function, COMPUTATION_METADATA_ATTR, None)
|
|
296
|
+
if not isinstance(metadata, ComputationMetadata):
|
|
297
|
+
raise ValueError(
|
|
298
|
+
f"The function {function.__name__} is not a Sigima computation function."
|
|
299
|
+
)
|
|
300
|
+
return metadata
|
|
301
|
+
|
|
302
|
+
|
|
303
|
+
def find_computation_functions() -> list[tuple[str, Callable]]:
|
|
304
|
+
"""Find all computation functions in the `sigima.proc` package.
|
|
305
|
+
|
|
306
|
+
This function uses introspection to locate all functions decorated with
|
|
307
|
+
`@computation_function` in the `sigima.proc` package and its subpackages.
|
|
308
|
+
|
|
309
|
+
Args:
|
|
310
|
+
module: Optional module to search in. If None, the current module is used.
|
|
311
|
+
|
|
312
|
+
Returns:
|
|
313
|
+
A list of tuples, each containing the function name and the function object.
|
|
314
|
+
"""
|
|
315
|
+
functions = []
|
|
316
|
+
objs = []
|
|
317
|
+
for _, modname, _ in pkgutil.walk_packages(
|
|
318
|
+
path=[osp.dirname(__file__)], prefix=".".join(__name__.split(".")[:-1]) + "."
|
|
319
|
+
):
|
|
320
|
+
try:
|
|
321
|
+
module = importlib.import_module(modname)
|
|
322
|
+
except Exception: # pylint: disable=broad-except
|
|
323
|
+
continue
|
|
324
|
+
for name, obj in inspect.getmembers(module, inspect.isfunction):
|
|
325
|
+
if is_computation_function(obj):
|
|
326
|
+
if obj in objs: # Avoid double entries for the same function
|
|
327
|
+
continue
|
|
328
|
+
objs.append(obj)
|
|
329
|
+
functions.append((modname, name, obj.__doc__))
|
|
330
|
+
return functions
|