sequenzo 0.1.31__cp310-cp310-macosx_10_9_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- _sequenzo_fastcluster.cpython-310-darwin.so +0 -0
- sequenzo/__init__.py +349 -0
- sequenzo/big_data/__init__.py +12 -0
- sequenzo/big_data/clara/__init__.py +26 -0
- sequenzo/big_data/clara/clara.py +476 -0
- sequenzo/big_data/clara/utils/__init__.py +27 -0
- sequenzo/big_data/clara/utils/aggregatecases.py +92 -0
- sequenzo/big_data/clara/utils/davies_bouldin.py +91 -0
- sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
- sequenzo/big_data/clara/utils/wfcmdd.py +205 -0
- sequenzo/big_data/clara/visualization.py +88 -0
- sequenzo/clustering/KMedoids.py +178 -0
- sequenzo/clustering/__init__.py +30 -0
- sequenzo/clustering/clustering_c_code.cpython-310-darwin.so +0 -0
- sequenzo/clustering/hierarchical_clustering.py +1256 -0
- sequenzo/clustering/sequenzo_fastcluster/fastcluster.py +495 -0
- sequenzo/clustering/sequenzo_fastcluster/src/fastcluster.cpp +1877 -0
- sequenzo/clustering/sequenzo_fastcluster/src/fastcluster_python.cpp +1264 -0
- sequenzo/clustering/src/KMedoid.cpp +263 -0
- sequenzo/clustering/src/PAM.cpp +237 -0
- sequenzo/clustering/src/PAMonce.cpp +265 -0
- sequenzo/clustering/src/cluster_quality.cpp +496 -0
- sequenzo/clustering/src/cluster_quality.h +128 -0
- sequenzo/clustering/src/cluster_quality_backup.cpp +570 -0
- sequenzo/clustering/src/module.cpp +228 -0
- sequenzo/clustering/src/weightedinertia.cpp +111 -0
- sequenzo/clustering/utils/__init__.py +27 -0
- sequenzo/clustering/utils/disscenter.py +122 -0
- sequenzo/data_preprocessing/__init__.py +22 -0
- sequenzo/data_preprocessing/helpers.py +303 -0
- sequenzo/datasets/__init__.py +41 -0
- sequenzo/datasets/biofam.csv +2001 -0
- sequenzo/datasets/biofam_child_domain.csv +2001 -0
- sequenzo/datasets/biofam_left_domain.csv +2001 -0
- sequenzo/datasets/biofam_married_domain.csv +2001 -0
- sequenzo/datasets/chinese_colonial_territories.csv +12 -0
- sequenzo/datasets/country_co2_emissions.csv +194 -0
- sequenzo/datasets/country_co2_emissions_global_deciles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_global_quintiles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_local_deciles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_local_quintiles.csv +195 -0
- sequenzo/datasets/country_gdp_per_capita.csv +194 -0
- sequenzo/datasets/dyadic_children.csv +61 -0
- sequenzo/datasets/dyadic_parents.csv +61 -0
- sequenzo/datasets/mvad.csv +713 -0
- sequenzo/datasets/pairfam_activity_by_month.csv +1028 -0
- sequenzo/datasets/pairfam_activity_by_year.csv +1028 -0
- sequenzo/datasets/pairfam_family_by_month.csv +1028 -0
- sequenzo/datasets/pairfam_family_by_year.csv +1028 -0
- sequenzo/datasets/political_science_aid_shock.csv +166 -0
- sequenzo/datasets/political_science_donor_fragmentation.csv +157 -0
- sequenzo/define_sequence_data.py +1400 -0
- sequenzo/dissimilarity_measures/__init__.py +31 -0
- sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +762 -0
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +246 -0
- sequenzo/dissimilarity_measures/src/DHDdistance.cpp +148 -0
- sequenzo/dissimilarity_measures/src/LCPdistance.cpp +114 -0
- sequenzo/dissimilarity_measures/src/LCPspellDistance.cpp +215 -0
- sequenzo/dissimilarity_measures/src/OMdistance.cpp +247 -0
- sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +281 -0
- sequenzo/dissimilarity_measures/src/__init__.py +0 -0
- sequenzo/dissimilarity_measures/src/dist2matrix.cpp +63 -0
- sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
- sequenzo/dissimilarity_measures/src/module.cpp +40 -0
- sequenzo/dissimilarity_measures/src/setup.py +30 -0
- sequenzo/dissimilarity_measures/src/utils.h +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/.github/cmake-test/main.cpp +6 -0
- sequenzo/dissimilarity_measures/src/xsimd/benchmark/main.cpp +159 -0
- sequenzo/dissimilarity_measures/src/xsimd/benchmark/xsimd_benchmark.hpp +565 -0
- sequenzo/dissimilarity_measures/src/xsimd/docs/source/conf.py +37 -0
- sequenzo/dissimilarity_measures/src/xsimd/examples/mandelbrot.cpp +330 -0
- sequenzo/dissimilarity_measures/src/xsimd/examples/pico_bench.hpp +246 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +266 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +112 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +323 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +218 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +2583 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +880 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_rounding.hpp +72 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +978 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +1924 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +1144 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +656 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512cd.hpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +244 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512er.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +2650 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512ifma.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512pf.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +131 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512bw.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512vbmi2.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avxvnni.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +24 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +393 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +788 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +93 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx2.hpp +46 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +97 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +92 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_i8mm_neon64.hpp +17 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +142 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +3142 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +1543 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +1513 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +1260 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +2024 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +67 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_1.hpp +339 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_2.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +186 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +1155 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +1780 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +240 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +484 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +269 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +27 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/math/xsimd_rem_pio2.hpp +719 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp +349 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp +91 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +2765 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx2_register.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512bw_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512cd_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512dq_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512er_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512f_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512ifma_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512pf_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi2_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp +54 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512vbmi2_register.hpp +53 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx_register.hpp +64 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avxvnni_register.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +1524 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch_constant.hpp +300 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_common_arch.hpp +47 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_emulated_register.hpp +80 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx2_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_sse_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma4_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_i8mm_neon64_register.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon64_register.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon_register.hpp +154 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_register.hpp +94 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +506 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse2_register.hpp +59 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse3_register.hpp +49 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_1_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_2_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_ssse3_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sve_register.hpp +156 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +337 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_utils.hpp +536 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_wasm_register.hpp +59 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +75 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/architectures/dummy.cpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set.cpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean.cpp +24 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_aligned.cpp +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_arch_independent.cpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_tag_dispatch.cpp +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_abstract_batches.cpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_parametric_batches.cpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum.hpp +31 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_avx2.cpp +3 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_sse2.cpp +3 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/writing_vectorized_code.cpp +11 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/main.cpp +31 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_api.cpp +230 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_arch.cpp +217 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +183 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +1049 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +508 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +409 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +712 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_constant.cpp +286 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_float.cpp +141 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +365 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +308 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_bitwise_cast.cpp +222 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_exponential.cpp +226 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_hyperbolic.cpp +183 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_power.cpp +265 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_trigonometric.cpp +236 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_conversion.cpp +248 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_custom_default_arch.cpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_error_gamma.cpp +170 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_explicit_batch_instantiation.cpp +32 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_exponential.cpp +202 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_extract_pair.cpp +92 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_fp_manipulation.cpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_gnu_source.cpp +30 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_hyperbolic.cpp +167 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +304 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +61 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_poly_evaluation.cpp +64 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +184 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_rounding.cpp +199 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +101 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +760 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.cpp +4 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.hpp +34 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_traits.cpp +172 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_trigonometric.cpp +208 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +611 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_wasm/test_wasm_playwright.py +123 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +1460 -0
- sequenzo/dissimilarity_measures/utils/__init__.py +16 -0
- sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py +44 -0
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
- sequenzo/multidomain/__init__.py +23 -0
- sequenzo/multidomain/association_between_domains.py +311 -0
- sequenzo/multidomain/cat.py +597 -0
- sequenzo/multidomain/combt.py +519 -0
- sequenzo/multidomain/dat.py +81 -0
- sequenzo/multidomain/idcd.py +139 -0
- sequenzo/multidomain/linked_polyad.py +292 -0
- sequenzo/openmp_setup.py +233 -0
- sequenzo/prefix_tree/__init__.py +62 -0
- sequenzo/prefix_tree/hub.py +114 -0
- sequenzo/prefix_tree/individual_level_indicators.py +1321 -0
- sequenzo/prefix_tree/spell_individual_level_indicators.py +580 -0
- sequenzo/prefix_tree/spell_level_indicators.py +297 -0
- sequenzo/prefix_tree/system_level_indicators.py +544 -0
- sequenzo/prefix_tree/utils.py +54 -0
- sequenzo/seqhmm/__init__.py +95 -0
- sequenzo/seqhmm/advanced_optimization.py +305 -0
- sequenzo/seqhmm/bootstrap.py +411 -0
- sequenzo/seqhmm/build_hmm.py +142 -0
- sequenzo/seqhmm/build_mhmm.py +136 -0
- sequenzo/seqhmm/build_nhmm.py +121 -0
- sequenzo/seqhmm/fit_mhmm.py +62 -0
- sequenzo/seqhmm/fit_model.py +61 -0
- sequenzo/seqhmm/fit_nhmm.py +76 -0
- sequenzo/seqhmm/formulas.py +289 -0
- sequenzo/seqhmm/forward_backward_nhmm.py +276 -0
- sequenzo/seqhmm/gradients_nhmm.py +306 -0
- sequenzo/seqhmm/hmm.py +291 -0
- sequenzo/seqhmm/mhmm.py +314 -0
- sequenzo/seqhmm/model_comparison.py +238 -0
- sequenzo/seqhmm/multichannel_em.py +282 -0
- sequenzo/seqhmm/multichannel_utils.py +138 -0
- sequenzo/seqhmm/nhmm.py +270 -0
- sequenzo/seqhmm/nhmm_utils.py +191 -0
- sequenzo/seqhmm/predict.py +137 -0
- sequenzo/seqhmm/predict_mhmm.py +142 -0
- sequenzo/seqhmm/simulate.py +878 -0
- sequenzo/seqhmm/utils.py +218 -0
- sequenzo/seqhmm/visualization.py +910 -0
- sequenzo/sequence_characteristics/__init__.py +40 -0
- sequenzo/sequence_characteristics/complexity_index.py +49 -0
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +220 -0
- sequenzo/sequence_characteristics/plot_characteristics.py +593 -0
- sequenzo/sequence_characteristics/simple_characteristics.py +311 -0
- sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +39 -0
- sequenzo/sequence_characteristics/turbulence.py +155 -0
- sequenzo/sequence_characteristics/variance_of_spell_durations.py +86 -0
- sequenzo/sequence_characteristics/within_sequence_entropy.py +43 -0
- sequenzo/suffix_tree/__init__.py +66 -0
- sequenzo/suffix_tree/hub.py +114 -0
- sequenzo/suffix_tree/individual_level_indicators.py +1679 -0
- sequenzo/suffix_tree/spell_individual_level_indicators.py +493 -0
- sequenzo/suffix_tree/spell_level_indicators.py +248 -0
- sequenzo/suffix_tree/system_level_indicators.py +535 -0
- sequenzo/suffix_tree/utils.py +56 -0
- sequenzo/version_check.py +283 -0
- sequenzo/visualization/__init__.py +29 -0
- sequenzo/visualization/plot_mean_time.py +222 -0
- sequenzo/visualization/plot_modal_state.py +276 -0
- sequenzo/visualization/plot_most_frequent_sequences.py +147 -0
- sequenzo/visualization/plot_relative_frequency.py +405 -0
- sequenzo/visualization/plot_sequence_index.py +1175 -0
- sequenzo/visualization/plot_single_medoid.py +153 -0
- sequenzo/visualization/plot_state_distribution.py +651 -0
- sequenzo/visualization/plot_transition_matrix.py +190 -0
- sequenzo/visualization/utils/__init__.py +23 -0
- sequenzo/visualization/utils/utils.py +310 -0
- sequenzo/with_event_history_analysis/__init__.py +35 -0
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
- sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
- sequenzo-0.1.31.dist-info/METADATA +286 -0
- sequenzo-0.1.31.dist-info/RECORD +299 -0
- sequenzo-0.1.31.dist-info/WHEEL +5 -0
- sequenzo-0.1.31.dist-info/licenses/LICENSE +28 -0
- sequenzo-0.1.31.dist-info/top_level.txt +2 -0
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/***************************************************************************
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* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
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* Martin Renou *
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* Copyright (c) QuantStack *
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* Copyright (c) Serge Guelton *
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* *
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* Distributed under the terms of the BSD 3-Clause License. *
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* *
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* The full license is in the file LICENSE, distributed with this software. *
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****************************************************************************/
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#include "xsimd/xsimd.hpp"
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#ifndef XSIMD_NO_SUPPORTED_ARCHITECTURE
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#include <cmath>
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#include <functional>
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#include <numeric>
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#include "test_utils.hpp"
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using namespace std::placeholders;
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template <class B>
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struct batch_complex_test
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{
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using batch_type = xsimd::simd_type<typename B::value_type>;
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using arch_type = typename B::arch_type;
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using real_batch_type = typename B::real_batch;
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using value_type = typename B::value_type;
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using real_value_type = typename value_type::value_type;
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static constexpr size_t size = B::size;
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using array_type = std::array<value_type, size>;
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using bool_array_type = std::array<bool, size>;
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using real_array_type = std::array<real_value_type, size>;
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array_type lhs;
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array_type rhs;
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value_type scalar;
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real_value_type real_scalar;
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#ifdef XSIMD_ENABLE_XTL_COMPLEX
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using xtl_value_type = xtl::xcomplex<real_value_type, real_value_type, true>;
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using xtl_array_type = std::array<xtl_value_type, size>;
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#endif
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batch_complex_test()
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{
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scalar = value_type(real_value_type(1.4), real_value_type(2.3));
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real_scalar = scalar.real();
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for (size_t i = 0; i < size; ++i)
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{
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lhs[i] = value_type(real_value_type(i) / real_value_type(4) + real_value_type(1.2) * std::sqrt(real_value_type(i + 0.25)),
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real_value_type(i) / real_value_type(5));
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rhs[i] = value_type(real_value_type(10.2) / real_value_type(i + 2) + real_value_type(0.25), real_value_type(i) / real_value_type(3.2));
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}
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}
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void test_load_store() const
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{
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{
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array_type res;
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batch_type b = batch_type::load_unaligned(lhs.data());
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b.store_unaligned(res.data());
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CHECK_EQ(res, lhs);
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alignas(arch_type::alignment()) array_type arhs(this->rhs);
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alignas(arch_type::alignment()) array_type ares;
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b = batch_type::load_aligned(arhs.data());
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b.store_aligned(ares.data());
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CHECK_EQ(ares, rhs);
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}
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{
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real_array_type real, imag, res_real, res_imag;
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for (size_t i = 0; i < size; ++i)
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{
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real[i] = lhs[i].real();
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imag[i] = lhs[i].imag();
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}
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batch_type b = batch_type::load_unaligned(real.data(), imag.data());
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b.store_unaligned(res_real.data(), res_imag.data());
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CHECK_EQ(res_real, real);
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alignas(arch_type::alignment()) real_array_type areal, aimag, ares_real, ares_imag;
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for (size_t i = 0; i < size; ++i)
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{
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areal[i] = lhs[i].real();
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aimag[i] = lhs[i].imag();
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}
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b = batch_type::load_aligned(areal.data(), aimag.data());
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b.store_aligned(ares_real.data(), ares_imag.data());
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CHECK_EQ(ares_real, areal);
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}
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{
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real_array_type real, imag, res_real, res_imag;
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for (size_t i = 0; i < size; ++i)
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{
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real[i] = lhs[i].real();
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imag[i] = 0;
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}
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batch_type b = batch_type::load_unaligned(real.data());
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b.store_unaligned(res_real.data(), res_imag.data());
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CHECK_EQ(res_real, real);
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CHECK_EQ(res_imag, imag);
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alignas(arch_type::alignment()) real_array_type areal, aimag, ares_real, ares_imag;
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for (size_t i = 0; i < size; ++i)
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{
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areal[i] = lhs[i].real();
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aimag[i] = 0;
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}
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b = batch_type::load_aligned(areal.data());
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b.store_aligned(ares_real.data(), ares_imag.data());
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CHECK_EQ(ares_real, areal);
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CHECK_EQ(ares_imag, aimag);
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}
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}
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#ifdef XSIMD_ENABLE_XTL_COMPLEX
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void test_load_store_xtl() const
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{
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xtl_array_type tmp;
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std::fill(tmp.begin(), tmp.end(), xtl_value_type(2, 3));
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alignas(arch_type::alignment()) xtl_array_type aligned_tmp;
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std::fill(aligned_tmp.begin(), aligned_tmp.end(), xtl_value_type(2, 3));
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batch_type b0(xtl_value_type(2, 3));
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CHECK_EQ(b0, tmp);
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batch_type b1 = xsimd::load_as<xtl_value_type>(aligned_tmp.data(), xsimd::aligned_mode());
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CHECK_EQ(b1, tmp);
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batch_type b2 = xsimd::load_as<xtl_value_type>(tmp.data(), xsimd::unaligned_mode());
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CHECK_EQ(b2, tmp);
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xsimd::store_as(aligned_tmp.data(), b1, xsimd::aligned_mode());
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CHECK_EQ(b1, aligned_tmp);
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xsimd::store_as(tmp.data(), b2, xsimd::unaligned_mode());
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CHECK_EQ(b2, tmp);
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}
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#endif
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void test_constructors() const
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{
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array_type tmp;
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std::fill(tmp.begin(), tmp.end(), value_type(2, 3));
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batch_type b0a(value_type(2, 3));
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CHECK_EQ(b0a, tmp);
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batch_type b0b = batch_type::broadcast(value_type(2, 3));
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CHECK_EQ(b0b, tmp);
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batch_type b0c = xsimd::broadcast(value_type(2, 3));
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CHECK_EQ(b0c, tmp);
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std::fill(tmp.begin(), tmp.end(), value_type(real_scalar));
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batch_type b1(real_scalar);
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CHECK_EQ(b1, tmp);
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real_array_type real, imag;
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for (size_t i = 0; i < size; ++i)
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{
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real[i] = lhs[i].real();
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imag[i] = lhs[i].imag();
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tmp[i] = value_type(real[i]);
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}
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}
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void test_access_operator() const
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{
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batch_type res = batch_lhs();
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for (size_t i = 0; i < size; ++i)
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{
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CHECK_EQ(res.get(i), lhs[i]);
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}
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}
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void test_first_element() const
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{
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batch_type res = batch_lhs();
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CHECK_EQ(res.first(), lhs[0]);
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}
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void test_arithmetic() const
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{
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// +batch
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{
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array_type expected = lhs;
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batch_type res = +batch_lhs();
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CHECK_BATCH_EQ(res, expected);
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}
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// -batch
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::negate<value_type>());
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batch_type res = -batch_lhs();
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CHECK_BATCH_EQ(res, expected);
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}
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// batch + batch
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::plus<value_type>());
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batch_type res = batch_lhs() + batch_rhs();
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CHECK_BATCH_EQ(res, expected);
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}
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// batch + scalar
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::plus<value_type>(), _1, scalar));
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batch_type lres = batch_lhs() + scalar;
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CHECK_BATCH_EQ(lres, expected);
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batch_type rres = scalar + batch_lhs();
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CHECK_BATCH_EQ(rres, expected);
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}
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// batch + real_batch
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
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[](const value_type& l, const value_type& r)
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{ return l + r.real(); });
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batch_type lres = batch_lhs() + batch_rhs().real();
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CHECK_BATCH_EQ(lres, expected);
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batch_type rres = batch_rhs().real() + batch_lhs();
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CHECK_BATCH_EQ(rres, expected);
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}
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// batch + real_scalar
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::plus<value_type>(), _1, real_scalar));
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batch_type lres = batch_lhs() + real_scalar;
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CHECK_BATCH_EQ(lres, expected);
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batch_type rres = real_scalar + batch_lhs();
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CHECK_BATCH_EQ(rres, expected);
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}
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// batch - batch
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::minus<value_type>());
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batch_type res = batch_lhs() - batch_rhs();
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CHECK_BATCH_EQ(res, expected);
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}
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// batch - scalar
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::minus<value_type>(), _1, scalar));
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batch_type lres = batch_lhs() - scalar;
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CHECK_BATCH_EQ(lres, expected);
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std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::minus<value_type>(), scalar, _1));
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batch_type rres = scalar - batch_lhs();
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CHECK_BATCH_EQ(rres, expected);
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}
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// batch - real_batch
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{
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array_type expected;
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std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
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[](const value_type& l, const value_type& r)
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{ return l - r.real(); });
|
|
260
|
+
batch_type lres = batch_lhs() - batch_rhs().real();
|
|
261
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
262
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
263
|
+
[](const value_type& l, const value_type& r)
|
|
264
|
+
{ return r.real() - l; });
|
|
265
|
+
batch_type rres = batch_rhs().real() - batch_lhs();
|
|
266
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
267
|
+
}
|
|
268
|
+
// batch - real_scalar
|
|
269
|
+
{
|
|
270
|
+
array_type expected;
|
|
271
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::minus<value_type>(), _1, real_scalar));
|
|
272
|
+
batch_type lres = batch_lhs() - real_scalar;
|
|
273
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
274
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::minus<value_type>(), real_scalar, _1));
|
|
275
|
+
batch_type rres = real_scalar - batch_lhs();
|
|
276
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
277
|
+
}
|
|
278
|
+
// batch * batch
|
|
279
|
+
{
|
|
280
|
+
array_type expected;
|
|
281
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::multiplies<value_type>());
|
|
282
|
+
batch_type res = batch_lhs() * batch_rhs();
|
|
283
|
+
CHECK_BATCH_EQ(res, expected);
|
|
284
|
+
}
|
|
285
|
+
// batch * scalar
|
|
286
|
+
{
|
|
287
|
+
array_type expected;
|
|
288
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::multiplies<value_type>(), _1, scalar));
|
|
289
|
+
batch_type lres = batch_lhs() * scalar;
|
|
290
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
291
|
+
batch_type rres = scalar * batch_lhs();
|
|
292
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
293
|
+
}
|
|
294
|
+
// batch * real_batch
|
|
295
|
+
{
|
|
296
|
+
array_type expected;
|
|
297
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
298
|
+
[](const value_type& l, const value_type& r)
|
|
299
|
+
{ return l * r.real(); });
|
|
300
|
+
batch_type lres = batch_lhs() * batch_rhs().real();
|
|
301
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
302
|
+
batch_type rres = batch_rhs().real() * batch_lhs();
|
|
303
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
304
|
+
}
|
|
305
|
+
// batch * real_scalar
|
|
306
|
+
{
|
|
307
|
+
array_type expected;
|
|
308
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::multiplies<value_type>(), _1, real_scalar));
|
|
309
|
+
batch_type lres = batch_lhs() * real_scalar;
|
|
310
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
311
|
+
batch_type rres = real_scalar * batch_lhs();
|
|
312
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
313
|
+
}
|
|
314
|
+
// batch / batch
|
|
315
|
+
{
|
|
316
|
+
array_type expected;
|
|
317
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::divides<value_type>());
|
|
318
|
+
batch_type res = batch_lhs() / batch_rhs();
|
|
319
|
+
CHECK_BATCH_EQ(res, expected);
|
|
320
|
+
}
|
|
321
|
+
// batch / scalar
|
|
322
|
+
{
|
|
323
|
+
array_type expected;
|
|
324
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::divides<value_type>(), _1, scalar));
|
|
325
|
+
batch_type lres = batch_lhs() / scalar;
|
|
326
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
327
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::divides<value_type>(), scalar, _1));
|
|
328
|
+
batch_type rres = scalar / batch_lhs();
|
|
329
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
330
|
+
}
|
|
331
|
+
// batch / real_batch
|
|
332
|
+
{
|
|
333
|
+
array_type expected;
|
|
334
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
335
|
+
[](const value_type& l, const value_type& r)
|
|
336
|
+
{ return l / r.real(); });
|
|
337
|
+
batch_type lres = batch_lhs() / batch_rhs().real();
|
|
338
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
339
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
340
|
+
[](const value_type& l, const value_type& r)
|
|
341
|
+
{ return r.real() / l; });
|
|
342
|
+
batch_type rres = batch_rhs().real() / batch_lhs();
|
|
343
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
344
|
+
}
|
|
345
|
+
// batch - real_scalar
|
|
346
|
+
{
|
|
347
|
+
array_type expected;
|
|
348
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::divides<value_type>(), _1, real_scalar));
|
|
349
|
+
batch_type lres = batch_lhs() / real_scalar;
|
|
350
|
+
CHECK_BATCH_EQ(lres, expected);
|
|
351
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::divides<value_type>(), real_scalar, _1));
|
|
352
|
+
batch_type rres = real_scalar / batch_lhs();
|
|
353
|
+
CHECK_BATCH_EQ(rres, expected);
|
|
354
|
+
}
|
|
355
|
+
}
|
|
356
|
+
|
|
357
|
+
void test_computed_assignment() const
|
|
358
|
+
{
|
|
359
|
+
|
|
360
|
+
// batch += batch
|
|
361
|
+
{
|
|
362
|
+
array_type expected;
|
|
363
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::plus<value_type>());
|
|
364
|
+
batch_type res = batch_lhs();
|
|
365
|
+
res += batch_rhs();
|
|
366
|
+
CHECK_BATCH_EQ(res, expected);
|
|
367
|
+
}
|
|
368
|
+
// batch += scalar
|
|
369
|
+
{
|
|
370
|
+
array_type expected;
|
|
371
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::plus<value_type>(), _1, scalar));
|
|
372
|
+
batch_type res = batch_lhs();
|
|
373
|
+
res += scalar;
|
|
374
|
+
CHECK_BATCH_EQ(res, expected);
|
|
375
|
+
}
|
|
376
|
+
// batch += real_batch
|
|
377
|
+
{
|
|
378
|
+
array_type expected;
|
|
379
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
380
|
+
[](const value_type& l, const value_type& r)
|
|
381
|
+
{ return l + r.real(); });
|
|
382
|
+
batch_type res = batch_lhs();
|
|
383
|
+
res += batch_rhs().real();
|
|
384
|
+
CHECK_BATCH_EQ(res, expected);
|
|
385
|
+
}
|
|
386
|
+
// batch += real_scalar
|
|
387
|
+
{
|
|
388
|
+
array_type expected;
|
|
389
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::plus<value_type>(), _1, real_scalar));
|
|
390
|
+
batch_type res = batch_lhs();
|
|
391
|
+
res += real_scalar;
|
|
392
|
+
CHECK_BATCH_EQ(res, expected);
|
|
393
|
+
}
|
|
394
|
+
// batch -= batch
|
|
395
|
+
{
|
|
396
|
+
array_type expected;
|
|
397
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::minus<value_type>());
|
|
398
|
+
batch_type res = batch_lhs();
|
|
399
|
+
res -= batch_rhs();
|
|
400
|
+
CHECK_BATCH_EQ(res, expected);
|
|
401
|
+
}
|
|
402
|
+
// batch -= scalar
|
|
403
|
+
{
|
|
404
|
+
array_type expected;
|
|
405
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::minus<value_type>(), _1, scalar));
|
|
406
|
+
batch_type res = batch_lhs();
|
|
407
|
+
res -= scalar;
|
|
408
|
+
CHECK_BATCH_EQ(res, expected);
|
|
409
|
+
}
|
|
410
|
+
// batch -= real_batch
|
|
411
|
+
{
|
|
412
|
+
array_type expected;
|
|
413
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
414
|
+
[](const value_type& l, const value_type& r)
|
|
415
|
+
{ return l - r.real(); });
|
|
416
|
+
batch_type res = batch_lhs();
|
|
417
|
+
res -= batch_rhs().real();
|
|
418
|
+
CHECK_BATCH_EQ(res, expected);
|
|
419
|
+
}
|
|
420
|
+
// batch -= real_scalar
|
|
421
|
+
{
|
|
422
|
+
array_type expected;
|
|
423
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::minus<value_type>(), _1, real_scalar));
|
|
424
|
+
batch_type res = batch_lhs();
|
|
425
|
+
res -= real_scalar;
|
|
426
|
+
CHECK_BATCH_EQ(res, expected);
|
|
427
|
+
}
|
|
428
|
+
// batch *= batch
|
|
429
|
+
{
|
|
430
|
+
array_type expected;
|
|
431
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::multiplies<value_type>());
|
|
432
|
+
batch_type res = batch_lhs();
|
|
433
|
+
res *= batch_rhs();
|
|
434
|
+
CHECK_BATCH_EQ(res, expected);
|
|
435
|
+
}
|
|
436
|
+
// batch *= scalar
|
|
437
|
+
{
|
|
438
|
+
array_type expected;
|
|
439
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::multiplies<value_type>(), _1, scalar));
|
|
440
|
+
batch_type res = batch_lhs();
|
|
441
|
+
res *= scalar;
|
|
442
|
+
CHECK_BATCH_EQ(res, expected);
|
|
443
|
+
}
|
|
444
|
+
// batch *= real_batch
|
|
445
|
+
{
|
|
446
|
+
array_type expected;
|
|
447
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
448
|
+
[](const value_type& l, const value_type& r)
|
|
449
|
+
{ return l * r.real(); });
|
|
450
|
+
batch_type res = batch_lhs();
|
|
451
|
+
res *= batch_rhs().real();
|
|
452
|
+
CHECK_BATCH_EQ(res, expected);
|
|
453
|
+
}
|
|
454
|
+
// batch *= real_scalar
|
|
455
|
+
{
|
|
456
|
+
array_type expected;
|
|
457
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::multiplies<value_type>(), _1, real_scalar));
|
|
458
|
+
batch_type res = batch_lhs();
|
|
459
|
+
res *= real_scalar;
|
|
460
|
+
CHECK_BATCH_EQ(res, expected);
|
|
461
|
+
}
|
|
462
|
+
// batch /= batch
|
|
463
|
+
{
|
|
464
|
+
array_type expected;
|
|
465
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(), std::divides<value_type>());
|
|
466
|
+
batch_type res = batch_lhs();
|
|
467
|
+
res /= batch_rhs();
|
|
468
|
+
CHECK_BATCH_EQ(res, expected);
|
|
469
|
+
}
|
|
470
|
+
// batch /= scalar
|
|
471
|
+
{
|
|
472
|
+
array_type expected;
|
|
473
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::divides<value_type>(), _1, scalar));
|
|
474
|
+
batch_type res = batch_lhs();
|
|
475
|
+
res /= scalar;
|
|
476
|
+
CHECK_BATCH_EQ(res, expected);
|
|
477
|
+
}
|
|
478
|
+
// batch /= real_batch
|
|
479
|
+
{
|
|
480
|
+
array_type expected;
|
|
481
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.cbegin(), expected.begin(),
|
|
482
|
+
[](const value_type& l, const value_type& r)
|
|
483
|
+
{ return l / r.real(); });
|
|
484
|
+
batch_type res = batch_lhs();
|
|
485
|
+
res /= batch_rhs().real();
|
|
486
|
+
CHECK_BATCH_EQ(res, expected);
|
|
487
|
+
}
|
|
488
|
+
// batch /= real_scalar
|
|
489
|
+
{
|
|
490
|
+
array_type expected;
|
|
491
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(), std::bind(std::divides<value_type>(), _1, real_scalar));
|
|
492
|
+
batch_type res = batch_lhs();
|
|
493
|
+
res /= real_scalar;
|
|
494
|
+
CHECK_BATCH_EQ(res, expected);
|
|
495
|
+
}
|
|
496
|
+
}
|
|
497
|
+
|
|
498
|
+
void test_conj_norm_proj() const
|
|
499
|
+
{
|
|
500
|
+
// conj
|
|
501
|
+
{
|
|
502
|
+
array_type expected;
|
|
503
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
504
|
+
[](const value_type& v)
|
|
505
|
+
{ using std::conj; return conj(v); });
|
|
506
|
+
batch_type res = conj(batch_lhs());
|
|
507
|
+
CHECK_BATCH_EQ(res, expected);
|
|
508
|
+
}
|
|
509
|
+
// norm
|
|
510
|
+
{
|
|
511
|
+
real_array_type expected;
|
|
512
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
513
|
+
[](const value_type& v)
|
|
514
|
+
{ using std::norm; return norm(v); });
|
|
515
|
+
real_batch_type res = norm(batch_lhs());
|
|
516
|
+
CHECK_BATCH_EQ(res, expected);
|
|
517
|
+
}
|
|
518
|
+
// proj
|
|
519
|
+
{
|
|
520
|
+
array_type expected;
|
|
521
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
522
|
+
[](const value_type& v)
|
|
523
|
+
{ using std::proj; return proj(v); });
|
|
524
|
+
batch_type res = proj(batch_lhs());
|
|
525
|
+
CHECK_BATCH_EQ(res, expected);
|
|
526
|
+
}
|
|
527
|
+
}
|
|
528
|
+
|
|
529
|
+
void test_conj_norm_proj_real() const
|
|
530
|
+
{
|
|
531
|
+
// conj real batch
|
|
532
|
+
{
|
|
533
|
+
array_type expected;
|
|
534
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
535
|
+
[](const value_type& v)
|
|
536
|
+
{ return std::conj(std::real(v)); });
|
|
537
|
+
batch_type res = conj(real(batch_lhs()));
|
|
538
|
+
CHECK_BATCH_EQ(res, expected);
|
|
539
|
+
}
|
|
540
|
+
// norm real batch
|
|
541
|
+
{
|
|
542
|
+
real_array_type expected;
|
|
543
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
544
|
+
[](const value_type& v)
|
|
545
|
+
{ return std::norm(std::real(v)); });
|
|
546
|
+
real_batch_type res = norm(real(batch_lhs()));
|
|
547
|
+
CHECK_BATCH_EQ(res, expected);
|
|
548
|
+
}
|
|
549
|
+
// proj real batch
|
|
550
|
+
{
|
|
551
|
+
array_type expected;
|
|
552
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
553
|
+
[](const value_type& v)
|
|
554
|
+
{ return std::proj(std::real(v)); });
|
|
555
|
+
batch_type res = proj(real(batch_lhs()));
|
|
556
|
+
CHECK_BATCH_EQ(res, expected);
|
|
557
|
+
}
|
|
558
|
+
}
|
|
559
|
+
|
|
560
|
+
void test_polar() const
|
|
561
|
+
{
|
|
562
|
+
// polar w/ magnitude/phase
|
|
563
|
+
{
|
|
564
|
+
array_type expected;
|
|
565
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.begin(), expected.begin(),
|
|
566
|
+
[](const value_type& v_lhs, const value_type& v_rhs)
|
|
567
|
+
{ return std::polar(std::real(v_lhs), std::real(v_rhs)); });
|
|
568
|
+
batch_type res = polar(real(batch_lhs()), real(batch_rhs()));
|
|
569
|
+
CHECK_BATCH_EQ(res, expected);
|
|
570
|
+
}
|
|
571
|
+
}
|
|
572
|
+
|
|
573
|
+
void test_horizontal_operations() const
|
|
574
|
+
{
|
|
575
|
+
// reduce_add
|
|
576
|
+
{
|
|
577
|
+
value_type expected = std::accumulate(lhs.cbegin(), lhs.cend(), value_type(0));
|
|
578
|
+
value_type res = reduce_add(batch_lhs());
|
|
579
|
+
CHECK_SCALAR_EQ(res, expected);
|
|
580
|
+
}
|
|
581
|
+
// reduce_mul
|
|
582
|
+
{
|
|
583
|
+
value_type expected = std::accumulate(lhs.cbegin(), lhs.cend(), value_type(1), std::multiplies<value_type>());
|
|
584
|
+
value_type res = reduce_mul(batch_lhs());
|
|
585
|
+
CHECK_SCALAR_EQ(res, expected);
|
|
586
|
+
}
|
|
587
|
+
}
|
|
588
|
+
|
|
589
|
+
void test_fused_operations() const
|
|
590
|
+
{
|
|
591
|
+
// fma
|
|
592
|
+
{
|
|
593
|
+
array_type expected;
|
|
594
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.begin(), expected.begin(),
|
|
595
|
+
[](const value_type& l, const value_type& r)
|
|
596
|
+
{ return l * r + r; });
|
|
597
|
+
batch_type res = xsimd::fma(batch_lhs(), batch_rhs(), batch_rhs());
|
|
598
|
+
CHECK_BATCH_EQ(res, expected);
|
|
599
|
+
}
|
|
600
|
+
// fms
|
|
601
|
+
{
|
|
602
|
+
array_type expected;
|
|
603
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.begin(), expected.begin(),
|
|
604
|
+
[](const value_type& l, const value_type& r)
|
|
605
|
+
{ return l * r - r; });
|
|
606
|
+
batch_type res = fms(batch_lhs(), batch_rhs(), batch_rhs());
|
|
607
|
+
CHECK_BATCH_EQ(res, expected);
|
|
608
|
+
}
|
|
609
|
+
|
|
610
|
+
// fnma
|
|
611
|
+
{
|
|
612
|
+
array_type expected;
|
|
613
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.begin(), expected.begin(),
|
|
614
|
+
[](const value_type& l, const value_type& r)
|
|
615
|
+
{ return -l * r + r; });
|
|
616
|
+
batch_type res = fnma(batch_lhs(), batch_rhs(), batch_rhs());
|
|
617
|
+
CHECK_BATCH_EQ(res, expected);
|
|
618
|
+
}
|
|
619
|
+
// fnms
|
|
620
|
+
{
|
|
621
|
+
array_type expected;
|
|
622
|
+
std::transform(lhs.cbegin(), lhs.cend(), rhs.begin(), expected.begin(),
|
|
623
|
+
[](const value_type& l, const value_type& r)
|
|
624
|
+
{ return -l * r - r; });
|
|
625
|
+
batch_type res = fnms(batch_lhs(), batch_rhs(), batch_rhs());
|
|
626
|
+
CHECK_BATCH_EQ(res, expected);
|
|
627
|
+
}
|
|
628
|
+
}
|
|
629
|
+
|
|
630
|
+
void test_boolean_conversion() const
|
|
631
|
+
{
|
|
632
|
+
// !batch
|
|
633
|
+
{
|
|
634
|
+
array_type expected;
|
|
635
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
636
|
+
[](const value_type& l)
|
|
637
|
+
{ return l == value_type(0); });
|
|
638
|
+
batch_type res = (batch_type)!batch_lhs();
|
|
639
|
+
CHECK_BATCH_EQ(res, expected);
|
|
640
|
+
}
|
|
641
|
+
}
|
|
642
|
+
|
|
643
|
+
#ifndef __FAST_MATH__
|
|
644
|
+
void test_isnan() const
|
|
645
|
+
{
|
|
646
|
+
{
|
|
647
|
+
bool_array_type expected;
|
|
648
|
+
std::transform(lhs.cbegin(), lhs.cend(), expected.begin(),
|
|
649
|
+
[](const value_type& l)
|
|
650
|
+
{ return std::isnan(l.real()) || std::isnan(l.imag()); });
|
|
651
|
+
typename batch_type::batch_bool_type res = isnan(batch_lhs());
|
|
652
|
+
CHECK_BATCH_EQ(res, expected);
|
|
653
|
+
}
|
|
654
|
+
}
|
|
655
|
+
#endif
|
|
656
|
+
|
|
657
|
+
private:
|
|
658
|
+
batch_type batch_lhs() const
|
|
659
|
+
{
|
|
660
|
+
batch_type res = batch_type::load_unaligned(lhs.data());
|
|
661
|
+
return res;
|
|
662
|
+
}
|
|
663
|
+
|
|
664
|
+
batch_type batch_rhs() const
|
|
665
|
+
{
|
|
666
|
+
batch_type res = batch_type::load_unaligned(rhs.data());
|
|
667
|
+
return res;
|
|
668
|
+
}
|
|
669
|
+
};
|
|
670
|
+
|
|
671
|
+
TEST_CASE_TEMPLATE("[xsimd complex batches]", B, BATCH_COMPLEX_TYPES)
|
|
672
|
+
{
|
|
673
|
+
batch_complex_test<B> Test;
|
|
674
|
+
SUBCASE("load_store") { Test.test_load_store(); }
|
|
675
|
+
|
|
676
|
+
#ifdef XSIMD_ENABLE_XTL_COMPLEX
|
|
677
|
+
SUBCASE("load_store_xtl")
|
|
678
|
+
{
|
|
679
|
+
Test.test_load_store_xtl();
|
|
680
|
+
}
|
|
681
|
+
#endif
|
|
682
|
+
|
|
683
|
+
SUBCASE("constructors")
|
|
684
|
+
{
|
|
685
|
+
Test.test_constructors();
|
|
686
|
+
}
|
|
687
|
+
|
|
688
|
+
SUBCASE("access_operator") { Test.test_access_operator(); }
|
|
689
|
+
|
|
690
|
+
SUBCASE("first element") { Test.test_first_element(); }
|
|
691
|
+
|
|
692
|
+
SUBCASE("arithmetic") { Test.test_arithmetic(); }
|
|
693
|
+
|
|
694
|
+
SUBCASE("computed_assignment") { Test.test_computed_assignment(); }
|
|
695
|
+
|
|
696
|
+
SUBCASE("conj_norm_proj") { Test.test_conj_norm_proj(); }
|
|
697
|
+
|
|
698
|
+
SUBCASE("conj_norm_proj_real") { Test.test_conj_norm_proj_real(); }
|
|
699
|
+
|
|
700
|
+
SUBCASE("polar") { Test.test_polar(); }
|
|
701
|
+
|
|
702
|
+
SUBCASE("horizontal_operations") { Test.test_horizontal_operations(); }
|
|
703
|
+
|
|
704
|
+
SUBCASE("fused_operations") { Test.test_fused_operations(); }
|
|
705
|
+
|
|
706
|
+
SUBCASE("boolean_conversion") { Test.test_boolean_conversion(); }
|
|
707
|
+
|
|
708
|
+
#ifndef __FAST_MATH__
|
|
709
|
+
SUBCASE("isnan") { Test.test_isnan(); }
|
|
710
|
+
#endif
|
|
711
|
+
}
|
|
712
|
+
#endif
|