sequenzo 0.1.31__cp310-cp310-macosx_10_9_x86_64.whl

sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp

@@ -0,0 +1,349 @@
+/***************************************************************************
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and         *
+ * Martin Renou                                                             *
+ * Copyright (c) QuantStack                                                 *
+ * Copyright (c) Serge Guelton                                              *
+ *                                                                          *
+ * Distributed under the terms of the BSD 3-Clause License.                 *
+ *                                                                          *
+ * The full license is in the file LICENSE, distributed with this software. *
+ ****************************************************************************/
+
+#ifndef XSIMD_ALIGNED_ALLOCATOR_HPP
+#define XSIMD_ALIGNED_ALLOCATOR_HPP
+
+#include <algorithm>
+#include <cstddef>
+#include <utility>
+#ifdef _WIN32
+#include <malloc.h>
+#else
+#include <cstdlib>
+#endif
+
+#include <cassert>
+#include <memory>
+
+#include "../config/xsimd_arch.hpp"
+
+namespace xsimd
+{
+
+    /**
+     * @class aligned_allocator
+     * @brief Allocator for aligned memory
+     *
+     * The aligned_allocator class template is an allocator that
+     * performs memory allocation aligned by the specified value.
+     *
+     * @tparam T type of objects to allocate.
+     * @tparam Align alignment in bytes.
+     */
+    template <class T, size_t Align = std::conditional<std::is_same<unsupported, default_arch>::value, common, default_arch>::type::alignment()>
+    class aligned_allocator
+    {
+    public:
+        using value_type = T;
+        using pointer = T*;
+        using const_pointer = const T*;
+        using reference = T&;
+        using const_reference = const T&;
+        using size_type = size_t;
+        using difference_type = ptrdiff_t;
+
+        static constexpr size_t alignment = Align;
+
+        template <class U>
+        struct rebind
+        {
+            using other = aligned_allocator<U, Align>;
+        };
+
+        XSIMD_INLINE aligned_allocator() noexcept;
+        XSIMD_INLINE aligned_allocator(const aligned_allocator& rhs) noexcept;
+
+        template <class U>
+        XSIMD_INLINE aligned_allocator(const aligned_allocator<U, Align>& rhs) noexcept;
+
+        XSIMD_INLINE ~aligned_allocator();
+
+        XSIMD_INLINE pointer address(reference) noexcept;
+        XSIMD_INLINE const_pointer address(const_reference) const noexcept;
+
+        XSIMD_INLINE pointer allocate(size_type n, const void* hint = 0);
+        XSIMD_INLINE void deallocate(pointer p, size_type n);
+
+        XSIMD_INLINE size_type max_size() const noexcept;
+        XSIMD_INLINE size_type size_max() const noexcept;
+
+        template <class U, class... Args>
+        XSIMD_INLINE void construct(U* p, Args&&... args);
+
+        template <class U>
+        XSIMD_INLINE void destroy(U* p);
+    };
+
+    template <class T1, size_t Align1, class T2, size_t Align2>
+    XSIMD_INLINE bool operator==(const aligned_allocator<T1, Align1>& lhs,
+                                 const aligned_allocator<T2, Align2>& rhs) noexcept;
+
+    template <class T1, size_t Align1, class T2, size_t Align2>
+    XSIMD_INLINE bool operator!=(const aligned_allocator<T1, Align1>& lhs,
+                                 const aligned_allocator<T2, Align2>& rhs) noexcept;
+
+    XSIMD_INLINE void* aligned_malloc(size_t size, size_t alignment);
+    XSIMD_INLINE void aligned_free(void* ptr);
+
+    template <class T>
+    XSIMD_INLINE size_t get_alignment_offset(const T* p, size_t size, size_t block_size);
+
+    /************************************
+     * aligned_allocator implementation *
+     ************************************/
+
+    /**
+     * Default constructor.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE aligned_allocator<T, A>::aligned_allocator() noexcept
+    {
+    }
+
+    /**
+     * Copy constructor.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE aligned_allocator<T, A>::aligned_allocator(const aligned_allocator&) noexcept
+    {
+    }
+
+    /**
+     * Extended copy constructor.
+     */
+    template <class T, size_t A>
+    template <class U>
+    XSIMD_INLINE aligned_allocator<T, A>::aligned_allocator(const aligned_allocator<U, A>&) noexcept
+    {
+    }
+
+    /**
+     * Destructor.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE aligned_allocator<T, A>::~aligned_allocator()
+    {
+    }
+
+    /**
+     * Returns the actual address of \c r even in presence of overloaded \c operator&.
+     * @param r the object to acquire address of.
+     * @return the actual address of \c r.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE auto
+    aligned_allocator<T, A>::address(reference r) noexcept -> pointer
+    {
+        return &r;
+    }
+
+    /**
+     * Returns the actual address of \c r even in presence of overloaded \c operator&.
+     * @param r the object to acquire address of.
+     * @return the actual address of \c r.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE auto
+    aligned_allocator<T, A>::address(const_reference r) const noexcept -> const_pointer
+    {
+        return &r;
+    }
+
+    /**
+     * Allocates <tt>n * sizeof(T)</tt> bytes of uninitialized memory, aligned by \c A.
+     * The alignment may require some extra memory allocation.
+     * @param n the number of objects to allocate storage for.
+     * @param hint unused parameter provided for standard compliance.
+     * @return a pointer to the first byte of a memory block suitably aligned and sufficient to
+     * hold an array of \c n objects of type \c T.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE auto
+    aligned_allocator<T, A>::allocate(size_type n, const void*) -> pointer
+    {
+        pointer res = reinterpret_cast<pointer>(aligned_malloc(sizeof(T) * n, A));
+#if defined(_CPPUNWIND) || defined(__cpp_exceptions)
+        if (res == nullptr)
+            throw std::bad_alloc();
+#endif
+        return res;
+    }
+
+    /**
+     * Deallocates the storage referenced by the pointer p, which must be a pointer obtained by
+     * an earlier call to allocate(). The argument \c n must be equal to the first argument of the call
+     * to allocate() that originally produced \c p; otherwise, the behavior is undefined.
+     * @param p pointer obtained from allocate().
+     * @param n number of objects earlier passed to allocate().
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE void aligned_allocator<T, A>::deallocate(pointer p, size_type)
+    {
+        aligned_free(p);
+    }
+
+    /**
+     * Returns the maximum theoretically possible value of \c n, for which the
+     * call allocate(n, 0) could succeed.
+     * @return the maximum supported allocated size.
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE auto
+    aligned_allocator<T, A>::max_size() const noexcept -> size_type
+    {
+        return size_type(-1) / sizeof(T);
+    }
+
+    /**
+     * This method is deprecated, use max_size() instead
+     */
+    template <class T, size_t A>
+    XSIMD_INLINE auto
+    aligned_allocator<T, A>::size_max() const noexcept -> size_type
+    {
+        return size_type(-1) / sizeof(T);
+    }
+
+    /**
+     * Constructs an object of type \c T in allocated uninitialized memory
+     * pointed to by \c p, using placement-new.
+     * @param p pointer to allocated uninitialized memory.
+     * @param args the constructor arguments to use.
+     */
+    template <class T, size_t A>
+    template <class U, class... Args>
+    XSIMD_INLINE void aligned_allocator<T, A>::construct(U* p, Args&&... args)
+    {
+        new ((void*)p) U(std::forward<Args>(args)...);
+    }
+
+    /**
+     * Calls the destructor of the object pointed to by \c p.
+     * @param p pointer to the object that is going to be destroyed.
+     */
+    template <class T, size_t A>
+    template <class U>
+    XSIMD_INLINE void aligned_allocator<T, A>::destroy(U* p)
+    {
+        p->~U();
+    }
+
+    /**
+     * @defgroup allocator_comparison Comparison operators
+     */
+
+    /**
+     * @ingroup allocator_comparison
+     * Compares two aligned memory allocator for equality. Since allocators
+     * are stateless, return \c true iff <tt>A1 == A2</tt>.
+     * @param lhs aligned_allocator to compare.
+     * @param rhs aligned_allocator to compare.
+     * @return true if the allocators have the same alignment.
+     */
+    template <class T1, size_t A1, class T2, size_t A2>
+    XSIMD_INLINE bool operator==(const aligned_allocator<T1, A1>& lhs,
+                                 const aligned_allocator<T2, A2>& rhs) noexcept
+    {
+        return lhs.alignment == rhs.alignment;
+    }
+
+    /**
+     * @ingroup allocator_comparison
+     * Compares two aligned memory allocator for inequality. Since allocators
+     * are stateless, return \c true iff <tt>A1 != A2</tt>.
+     * @param lhs aligned_allocator to compare.
+     * @param rhs aligned_allocator to compare.
+     * @return true if the allocators have different alignments.
+     */
+    template <class T1, size_t A1, class T2, size_t A2>
+    XSIMD_INLINE bool operator!=(const aligned_allocator<T1, A1>& lhs,
+                                 const aligned_allocator<T2, A2>& rhs) noexcept
+    {
+        return !(lhs == rhs);
+    }
+
+    /****************************************
+     * aligned malloc / free implementation *
+     ****************************************/
+
+    namespace detail
+    {
+        XSIMD_INLINE void* xaligned_malloc(size_t size, size_t alignment)
+        {
+            assert(((alignment & (alignment - 1)) == 0) && "alignment must be a power of two");
+            assert((alignment >= sizeof(void*)) && "alignment must be at least the size of a pointer");
+            void* res = nullptr;
+#ifdef _WIN32
+            res = _aligned_malloc(size, alignment);
+#else
+            if (posix_memalign(&res, alignment, size) != 0)
+            {
+                res = nullptr;
+            }
+#endif
+            return res;
+        }
+
+        XSIMD_INLINE void xaligned_free(void* ptr)
+        {
+#ifdef _WIN32
+            _aligned_free(ptr);
+#else
+            free(ptr);
+#endif
+        }
+    }
+
+    XSIMD_INLINE void* aligned_malloc(size_t size, size_t alignment)
+    {
+        return detail::xaligned_malloc(size, alignment);
+    }
+
+    XSIMD_INLINE void aligned_free(void* ptr)
+    {
+        detail::xaligned_free(ptr);
+    }
+
+    template <class T>
+    XSIMD_INLINE size_t get_alignment_offset(const T* p, size_t size, size_t block_size)
+    {
+        // size_t block_size = simd_traits<T>::size;
+        if (block_size == 1)
+        {
+            // The simd_block consists of exactly one scalar so that all
+            // elements of the array
+            // are "well" aligned.
+            return 0;
+        }
+        else if (size_t(p) & (sizeof(T) - 1))
+        {
+            // The array is not aligned to the size of a single element, so that
+            // no element
+            // of the array is well aligned
+            return size;
+        }
+        else
+        {
+            size_t block_mask = block_size - 1;
+            return std::min<size_t>(
+                (block_size - ((size_t(p) / sizeof(T)) & block_mask)) & block_mask,
+                size);
+        }
+    }
+
+    template <class T, class A = default_arch>
+    using default_allocator = typename std::conditional<A::requires_alignment(),
+                                                        aligned_allocator<T, A::alignment()>,
+                                                        std::allocator<T>>::type;
+}
+
+#endif

sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp

@@ -0,0 +1,91 @@
+/***************************************************************************
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and         *
+ * Martin Renou                                                             *
+ * Copyright (c) QuantStack                                                 *
+ * Copyright (c) Serge Guelton                                              *
+ *                                                                          *
+ * Distributed under the terms of the BSD 3-Clause License.                 *
+ *                                                                          *
+ * The full license is in the file LICENSE, distributed with this software. *
+ ****************************************************************************/
+
+#ifndef XSIMD_ALIGNMENT_HPP
+#define XSIMD_ALIGNMENT_HPP
+
+#include "../types/xsimd_utils.hpp"
+#include "xsimd_aligned_allocator.hpp"
+
+namespace xsimd
+{
+    /**
+     * @struct aligned_mode
+     * @brief tag for load and store of aligned memory.
+     */
+    struct aligned_mode
+    {
+    };
+
+    /**
+     * @struct unaligned_mode
+     * @brief tag for load and store of unaligned memory.
+     */
+    struct unaligned_mode
+    {
+    };
+
+    /***********************
+     * Allocator alignment *
+     ***********************/
+
+    template <class A>
+    struct allocator_alignment
+    {
+        using type = unaligned_mode;
+    };
+
+    template <class T, size_t N>
+    struct allocator_alignment<aligned_allocator<T, N>>
+    {
+        using type = aligned_mode;
+    };
+
+    template <class A>
+    using allocator_alignment_t = typename allocator_alignment<A>::type;
+
+    /***********************
+     * container alignment *
+     ***********************/
+
+    template <class C, class = void>
+    struct container_alignment
+    {
+        using type = unaligned_mode;
+    };
+
+    template <class C>
+    struct container_alignment<C, detail::void_t<typename C::allocator_type>>
+    {
+        using type = allocator_alignment_t<typename C::allocator_type>;
+    };
+
+    template <class C>
+    using container_alignment_t = typename container_alignment<C>::type;
+
+    /*********************
+     * alignment checker *
+     *********************/
+
+    /**
+     * Checks whether pointer \c ptr is aligned according the alignment
+     * requirements of \c Arch.
+     * @return true if the alignment requirements are met
+     */
+    template <class Arch = default_arch>
+    XSIMD_INLINE bool is_aligned(void const* ptr)
+    {
+        return (reinterpret_cast<uintptr_t>(ptr) % static_cast<uintptr_t>(Arch::alignment())) == 0;
+    }
+
+}
+
+#endif

sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp

@@ -0,0 +1,55 @@
+/***************************************************************************
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and         *
+ * Martin Renou                                                             *
+ * Copyright (c) QuantStack                                                 *
+ * Copyright (c) Serge Guelton                                              *
+ *                                                                          *
+ * Distributed under the terms of the BSD 3-Clause License.                 *
+ *                                                                          *
+ * The full license is in the file LICENSE, distributed with this software. *
+ ****************************************************************************/
+
+#include "xsimd_fma3_sse_register.hpp"
+#include "xsimd_fma4_register.hpp"
+#include "xsimd_sse2_register.hpp"
+#include "xsimd_sse3_register.hpp"
+#include "xsimd_sse4_1_register.hpp"
+#include "xsimd_sse4_2_register.hpp"
+
+#include "xsimd_avx2_register.hpp"
+#include "xsimd_avx_register.hpp"
+#include "xsimd_avxvnni_register.hpp"
+#include "xsimd_fma3_avx2_register.hpp"
+#include "xsimd_fma3_avx_register.hpp"
+
+#include "xsimd_avx512vnni_avx512bw_register.hpp"
+#include "xsimd_avx512vnni_avx512vbmi2_register.hpp"
+
+#include "xsimd_avx512ifma_register.hpp"
+#include "xsimd_avx512vbmi2_register.hpp"
+#include "xsimd_avx512vbmi_register.hpp"
+
+#include "xsimd_avx512er_register.hpp"
+#include "xsimd_avx512pf_register.hpp"
+
+#include "xsimd_avx512bw_register.hpp"
+#include "xsimd_avx512cd_register.hpp"
+#include "xsimd_avx512dq_register.hpp"
+#include "xsimd_avx512f_register.hpp"
+
+#include "xsimd_i8mm_neon64_register.hpp"
+
+#include "xsimd_neon64_register.hpp"
+#include "xsimd_neon_register.hpp"
+
+#include "xsimd_sve_register.hpp"
+
+#include "xsimd_rvv_register.hpp"
+
+#include "xsimd_wasm_register.hpp"
+
+#include "xsimd_vsx_register.hpp"
+
+#if XSIMD_WITH_EMULATED
+#include "xsimd_emulated_register.hpp"
+#endif