sequenzo 0.1.31__cp310-cp310-macosx_10_9_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- _sequenzo_fastcluster.cpython-310-darwin.so +0 -0
- sequenzo/__init__.py +349 -0
- sequenzo/big_data/__init__.py +12 -0
- sequenzo/big_data/clara/__init__.py +26 -0
- sequenzo/big_data/clara/clara.py +476 -0
- sequenzo/big_data/clara/utils/__init__.py +27 -0
- sequenzo/big_data/clara/utils/aggregatecases.py +92 -0
- sequenzo/big_data/clara/utils/davies_bouldin.py +91 -0
- sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
- sequenzo/big_data/clara/utils/wfcmdd.py +205 -0
- sequenzo/big_data/clara/visualization.py +88 -0
- sequenzo/clustering/KMedoids.py +178 -0
- sequenzo/clustering/__init__.py +30 -0
- sequenzo/clustering/clustering_c_code.cpython-310-darwin.so +0 -0
- sequenzo/clustering/hierarchical_clustering.py +1256 -0
- sequenzo/clustering/sequenzo_fastcluster/fastcluster.py +495 -0
- sequenzo/clustering/sequenzo_fastcluster/src/fastcluster.cpp +1877 -0
- sequenzo/clustering/sequenzo_fastcluster/src/fastcluster_python.cpp +1264 -0
- sequenzo/clustering/src/KMedoid.cpp +263 -0
- sequenzo/clustering/src/PAM.cpp +237 -0
- sequenzo/clustering/src/PAMonce.cpp +265 -0
- sequenzo/clustering/src/cluster_quality.cpp +496 -0
- sequenzo/clustering/src/cluster_quality.h +128 -0
- sequenzo/clustering/src/cluster_quality_backup.cpp +570 -0
- sequenzo/clustering/src/module.cpp +228 -0
- sequenzo/clustering/src/weightedinertia.cpp +111 -0
- sequenzo/clustering/utils/__init__.py +27 -0
- sequenzo/clustering/utils/disscenter.py +122 -0
- sequenzo/data_preprocessing/__init__.py +22 -0
- sequenzo/data_preprocessing/helpers.py +303 -0
- sequenzo/datasets/__init__.py +41 -0
- sequenzo/datasets/biofam.csv +2001 -0
- sequenzo/datasets/biofam_child_domain.csv +2001 -0
- sequenzo/datasets/biofam_left_domain.csv +2001 -0
- sequenzo/datasets/biofam_married_domain.csv +2001 -0
- sequenzo/datasets/chinese_colonial_territories.csv +12 -0
- sequenzo/datasets/country_co2_emissions.csv +194 -0
- sequenzo/datasets/country_co2_emissions_global_deciles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_global_quintiles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_local_deciles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_local_quintiles.csv +195 -0
- sequenzo/datasets/country_gdp_per_capita.csv +194 -0
- sequenzo/datasets/dyadic_children.csv +61 -0
- sequenzo/datasets/dyadic_parents.csv +61 -0
- sequenzo/datasets/mvad.csv +713 -0
- sequenzo/datasets/pairfam_activity_by_month.csv +1028 -0
- sequenzo/datasets/pairfam_activity_by_year.csv +1028 -0
- sequenzo/datasets/pairfam_family_by_month.csv +1028 -0
- sequenzo/datasets/pairfam_family_by_year.csv +1028 -0
- sequenzo/datasets/political_science_aid_shock.csv +166 -0
- sequenzo/datasets/political_science_donor_fragmentation.csv +157 -0
- sequenzo/define_sequence_data.py +1400 -0
- sequenzo/dissimilarity_measures/__init__.py +31 -0
- sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +762 -0
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +246 -0
- sequenzo/dissimilarity_measures/src/DHDdistance.cpp +148 -0
- sequenzo/dissimilarity_measures/src/LCPdistance.cpp +114 -0
- sequenzo/dissimilarity_measures/src/LCPspellDistance.cpp +215 -0
- sequenzo/dissimilarity_measures/src/OMdistance.cpp +247 -0
- sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +281 -0
- sequenzo/dissimilarity_measures/src/__init__.py +0 -0
- sequenzo/dissimilarity_measures/src/dist2matrix.cpp +63 -0
- sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
- sequenzo/dissimilarity_measures/src/module.cpp +40 -0
- sequenzo/dissimilarity_measures/src/setup.py +30 -0
- sequenzo/dissimilarity_measures/src/utils.h +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/.github/cmake-test/main.cpp +6 -0
- sequenzo/dissimilarity_measures/src/xsimd/benchmark/main.cpp +159 -0
- sequenzo/dissimilarity_measures/src/xsimd/benchmark/xsimd_benchmark.hpp +565 -0
- sequenzo/dissimilarity_measures/src/xsimd/docs/source/conf.py +37 -0
- sequenzo/dissimilarity_measures/src/xsimd/examples/mandelbrot.cpp +330 -0
- sequenzo/dissimilarity_measures/src/xsimd/examples/pico_bench.hpp +246 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +266 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +112 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +323 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +218 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +2583 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +880 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_rounding.hpp +72 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +978 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +1924 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +1144 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +656 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512cd.hpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +244 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512er.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +2650 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512ifma.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512pf.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +131 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512bw.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512vbmi2.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avxvnni.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +24 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +393 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +788 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +93 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx2.hpp +46 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +97 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +92 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_i8mm_neon64.hpp +17 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +142 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +3142 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +1543 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +1513 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +1260 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +2024 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +67 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_1.hpp +339 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_2.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +186 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +1155 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +1780 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +240 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +484 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +269 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +27 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/math/xsimd_rem_pio2.hpp +719 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp +349 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp +91 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +2765 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx2_register.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512bw_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512cd_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512dq_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512er_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512f_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512ifma_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512pf_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi2_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp +54 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512vbmi2_register.hpp +53 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx_register.hpp +64 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avxvnni_register.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +1524 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch_constant.hpp +300 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_common_arch.hpp +47 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_emulated_register.hpp +80 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx2_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_sse_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma4_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_i8mm_neon64_register.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon64_register.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon_register.hpp +154 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_register.hpp +94 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +506 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse2_register.hpp +59 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse3_register.hpp +49 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_1_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_2_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_ssse3_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sve_register.hpp +156 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +337 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_utils.hpp +536 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_wasm_register.hpp +59 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +75 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/architectures/dummy.cpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set.cpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean.cpp +24 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_aligned.cpp +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_arch_independent.cpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_tag_dispatch.cpp +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_abstract_batches.cpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_parametric_batches.cpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum.hpp +31 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_avx2.cpp +3 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_sse2.cpp +3 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/writing_vectorized_code.cpp +11 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/main.cpp +31 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_api.cpp +230 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_arch.cpp +217 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +183 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +1049 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +508 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +409 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +712 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_constant.cpp +286 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_float.cpp +141 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +365 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +308 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_bitwise_cast.cpp +222 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_exponential.cpp +226 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_hyperbolic.cpp +183 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_power.cpp +265 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_trigonometric.cpp +236 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_conversion.cpp +248 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_custom_default_arch.cpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_error_gamma.cpp +170 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_explicit_batch_instantiation.cpp +32 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_exponential.cpp +202 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_extract_pair.cpp +92 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_fp_manipulation.cpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_gnu_source.cpp +30 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_hyperbolic.cpp +167 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +304 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +61 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_poly_evaluation.cpp +64 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +184 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_rounding.cpp +199 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +101 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +760 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.cpp +4 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.hpp +34 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_traits.cpp +172 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_trigonometric.cpp +208 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +611 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_wasm/test_wasm_playwright.py +123 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +1460 -0
- sequenzo/dissimilarity_measures/utils/__init__.py +16 -0
- sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py +44 -0
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
- sequenzo/multidomain/__init__.py +23 -0
- sequenzo/multidomain/association_between_domains.py +311 -0
- sequenzo/multidomain/cat.py +597 -0
- sequenzo/multidomain/combt.py +519 -0
- sequenzo/multidomain/dat.py +81 -0
- sequenzo/multidomain/idcd.py +139 -0
- sequenzo/multidomain/linked_polyad.py +292 -0
- sequenzo/openmp_setup.py +233 -0
- sequenzo/prefix_tree/__init__.py +62 -0
- sequenzo/prefix_tree/hub.py +114 -0
- sequenzo/prefix_tree/individual_level_indicators.py +1321 -0
- sequenzo/prefix_tree/spell_individual_level_indicators.py +580 -0
- sequenzo/prefix_tree/spell_level_indicators.py +297 -0
- sequenzo/prefix_tree/system_level_indicators.py +544 -0
- sequenzo/prefix_tree/utils.py +54 -0
- sequenzo/seqhmm/__init__.py +95 -0
- sequenzo/seqhmm/advanced_optimization.py +305 -0
- sequenzo/seqhmm/bootstrap.py +411 -0
- sequenzo/seqhmm/build_hmm.py +142 -0
- sequenzo/seqhmm/build_mhmm.py +136 -0
- sequenzo/seqhmm/build_nhmm.py +121 -0
- sequenzo/seqhmm/fit_mhmm.py +62 -0
- sequenzo/seqhmm/fit_model.py +61 -0
- sequenzo/seqhmm/fit_nhmm.py +76 -0
- sequenzo/seqhmm/formulas.py +289 -0
- sequenzo/seqhmm/forward_backward_nhmm.py +276 -0
- sequenzo/seqhmm/gradients_nhmm.py +306 -0
- sequenzo/seqhmm/hmm.py +291 -0
- sequenzo/seqhmm/mhmm.py +314 -0
- sequenzo/seqhmm/model_comparison.py +238 -0
- sequenzo/seqhmm/multichannel_em.py +282 -0
- sequenzo/seqhmm/multichannel_utils.py +138 -0
- sequenzo/seqhmm/nhmm.py +270 -0
- sequenzo/seqhmm/nhmm_utils.py +191 -0
- sequenzo/seqhmm/predict.py +137 -0
- sequenzo/seqhmm/predict_mhmm.py +142 -0
- sequenzo/seqhmm/simulate.py +878 -0
- sequenzo/seqhmm/utils.py +218 -0
- sequenzo/seqhmm/visualization.py +910 -0
- sequenzo/sequence_characteristics/__init__.py +40 -0
- sequenzo/sequence_characteristics/complexity_index.py +49 -0
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +220 -0
- sequenzo/sequence_characteristics/plot_characteristics.py +593 -0
- sequenzo/sequence_characteristics/simple_characteristics.py +311 -0
- sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +39 -0
- sequenzo/sequence_characteristics/turbulence.py +155 -0
- sequenzo/sequence_characteristics/variance_of_spell_durations.py +86 -0
- sequenzo/sequence_characteristics/within_sequence_entropy.py +43 -0
- sequenzo/suffix_tree/__init__.py +66 -0
- sequenzo/suffix_tree/hub.py +114 -0
- sequenzo/suffix_tree/individual_level_indicators.py +1679 -0
- sequenzo/suffix_tree/spell_individual_level_indicators.py +493 -0
- sequenzo/suffix_tree/spell_level_indicators.py +248 -0
- sequenzo/suffix_tree/system_level_indicators.py +535 -0
- sequenzo/suffix_tree/utils.py +56 -0
- sequenzo/version_check.py +283 -0
- sequenzo/visualization/__init__.py +29 -0
- sequenzo/visualization/plot_mean_time.py +222 -0
- sequenzo/visualization/plot_modal_state.py +276 -0
- sequenzo/visualization/plot_most_frequent_sequences.py +147 -0
- sequenzo/visualization/plot_relative_frequency.py +405 -0
- sequenzo/visualization/plot_sequence_index.py +1175 -0
- sequenzo/visualization/plot_single_medoid.py +153 -0
- sequenzo/visualization/plot_state_distribution.py +651 -0
- sequenzo/visualization/plot_transition_matrix.py +190 -0
- sequenzo/visualization/utils/__init__.py +23 -0
- sequenzo/visualization/utils/utils.py +310 -0
- sequenzo/with_event_history_analysis/__init__.py +35 -0
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
- sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
- sequenzo-0.1.31.dist-info/METADATA +286 -0
- sequenzo-0.1.31.dist-info/RECORD +299 -0
- sequenzo-0.1.31.dist-info/WHEEL +5 -0
- sequenzo-0.1.31.dist-info/licenses/LICENSE +28 -0
- sequenzo-0.1.31.dist-info/top_level.txt +2 -0
|
@@ -0,0 +1,409 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#include "xsimd/xsimd.hpp"
|
|
13
|
+
#ifndef XSIMD_NO_SUPPORTED_ARCHITECTURE
|
|
14
|
+
|
|
15
|
+
#include "test_utils.hpp"
|
|
16
|
+
|
|
17
|
+
#if !XSIMD_WITH_NEON || XSIMD_WITH_NEON64
|
|
18
|
+
namespace detail
|
|
19
|
+
{
|
|
20
|
+
template <class T_out, class T_in>
|
|
21
|
+
inline typename std::enable_if<std::is_unsigned<T_in>::value && std::is_integral<T_out>::value, bool>::type
|
|
22
|
+
is_convertible(T_in value)
|
|
23
|
+
{
|
|
24
|
+
return static_cast<uint64_t>(value) <= static_cast<uint64_t>(std::numeric_limits<T_out>::max());
|
|
25
|
+
}
|
|
26
|
+
|
|
27
|
+
template <class T_out, class T_in>
|
|
28
|
+
inline typename std::enable_if<std::is_integral<T_in>::value && std::is_signed<T_in>::value && std::is_integral<T_out>::value && std::is_signed<T_out>::value, bool>::type
|
|
29
|
+
is_convertible(T_in value)
|
|
30
|
+
{
|
|
31
|
+
int64_t signed_value = static_cast<int64_t>(value);
|
|
32
|
+
return signed_value < static_cast<int64_t>(std::numeric_limits<T_out>::max()) && signed_value >= static_cast<int64_t>(std::numeric_limits<T_out>::lowest());
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
template <class T_out, class T_in>
|
|
36
|
+
inline typename std::enable_if<std::is_integral<T_in>::value && std::is_signed<T_in>::value && std::is_unsigned<T_out>::value, bool>::type
|
|
37
|
+
is_convertible(T_in value)
|
|
38
|
+
{
|
|
39
|
+
return value >= 0 && is_convertible<T_out>(static_cast<uint64_t>(value));
|
|
40
|
+
}
|
|
41
|
+
|
|
42
|
+
template <class T_out, class T_in>
|
|
43
|
+
inline typename std::enable_if<std::is_floating_point<T_in>::value && std::is_integral<T_out>::value, bool>::type
|
|
44
|
+
is_convertible(T_in value)
|
|
45
|
+
{
|
|
46
|
+
return value < static_cast<T_in>(std::numeric_limits<T_out>::max()) && value >= static_cast<T_in>(std::numeric_limits<T_out>::lowest());
|
|
47
|
+
}
|
|
48
|
+
|
|
49
|
+
template <class T_out, class T_in>
|
|
50
|
+
inline typename std::enable_if<std::is_floating_point<T_out>::value, bool>::type
|
|
51
|
+
is_convertible(T_in)
|
|
52
|
+
{
|
|
53
|
+
return true;
|
|
54
|
+
}
|
|
55
|
+
|
|
56
|
+
template <typename Arch, typename From, typename To>
|
|
57
|
+
using uses_fast_cast = std::is_same<xsimd::kernel::detail::conversion_type<Arch, From, To>,
|
|
58
|
+
xsimd::kernel::detail::with_fast_conversion>;
|
|
59
|
+
}
|
|
60
|
+
|
|
61
|
+
template <class CP>
|
|
62
|
+
struct batch_cast_test
|
|
63
|
+
{
|
|
64
|
+
static constexpr size_t N = CP::size;
|
|
65
|
+
static constexpr size_t A = CP::alignment;
|
|
66
|
+
|
|
67
|
+
using int8_batch = xsimd::batch<int8_t>;
|
|
68
|
+
using uint8_batch = xsimd::batch<uint8_t>;
|
|
69
|
+
using int16_batch = xsimd::batch<int16_t>;
|
|
70
|
+
using uint16_batch = xsimd::batch<uint16_t>;
|
|
71
|
+
using int32_batch = xsimd::batch<int32_t>;
|
|
72
|
+
using uint32_batch = xsimd::batch<uint32_t>;
|
|
73
|
+
using int64_batch = xsimd::batch<int64_t>;
|
|
74
|
+
using uint64_batch = xsimd::batch<uint64_t>;
|
|
75
|
+
using float_batch = xsimd::batch<float>;
|
|
76
|
+
using double_batch = xsimd::batch<double>;
|
|
77
|
+
|
|
78
|
+
std::vector<uint64_t> int_test_values;
|
|
79
|
+
std::vector<float> float_test_values;
|
|
80
|
+
std::vector<double> double_test_values;
|
|
81
|
+
|
|
82
|
+
batch_cast_test()
|
|
83
|
+
{
|
|
84
|
+
int_test_values = {
|
|
85
|
+
0,
|
|
86
|
+
0x01,
|
|
87
|
+
0x7f,
|
|
88
|
+
0x80,
|
|
89
|
+
0xff,
|
|
90
|
+
0x0100,
|
|
91
|
+
0x7fff,
|
|
92
|
+
0x8000,
|
|
93
|
+
0xffff,
|
|
94
|
+
0x00010000,
|
|
95
|
+
0x7fffffff,
|
|
96
|
+
0x80000000,
|
|
97
|
+
0xffffffff,
|
|
98
|
+
0x0000000100000000,
|
|
99
|
+
0x7fffffffffffffff,
|
|
100
|
+
0x8000000000000000,
|
|
101
|
+
0xffffffffffffffff
|
|
102
|
+
};
|
|
103
|
+
|
|
104
|
+
float_test_values = {
|
|
105
|
+
0.0f,
|
|
106
|
+
1.0f,
|
|
107
|
+
-1.0f,
|
|
108
|
+
127.0f,
|
|
109
|
+
128.0f,
|
|
110
|
+
-128.0f,
|
|
111
|
+
255.0f,
|
|
112
|
+
256.0f,
|
|
113
|
+
-256.0f,
|
|
114
|
+
32767.0f,
|
|
115
|
+
32768.0f,
|
|
116
|
+
-32768.0f,
|
|
117
|
+
65535.0f,
|
|
118
|
+
65536.0f,
|
|
119
|
+
-65536.0f,
|
|
120
|
+
2147483647.0f,
|
|
121
|
+
2147483648.0f,
|
|
122
|
+
-2147483648.0f,
|
|
123
|
+
4294967167.0f
|
|
124
|
+
};
|
|
125
|
+
|
|
126
|
+
double_test_values = {
|
|
127
|
+
0.0,
|
|
128
|
+
1.0,
|
|
129
|
+
-1.0,
|
|
130
|
+
127.0,
|
|
131
|
+
128.0,
|
|
132
|
+
-128.0,
|
|
133
|
+
255.0,
|
|
134
|
+
256.0,
|
|
135
|
+
-256.0,
|
|
136
|
+
32767.0,
|
|
137
|
+
32768.0,
|
|
138
|
+
-32768.0,
|
|
139
|
+
65535.0,
|
|
140
|
+
65536.0,
|
|
141
|
+
-65536.0,
|
|
142
|
+
2147483647.0,
|
|
143
|
+
2147483648.0,
|
|
144
|
+
-2147483648.0,
|
|
145
|
+
4294967295.0,
|
|
146
|
+
4294967296.0,
|
|
147
|
+
-4294967296.0,
|
|
148
|
+
9223372036854775807.0,
|
|
149
|
+
9223372036854775808.0,
|
|
150
|
+
-9223372036854775808.0,
|
|
151
|
+
18446744073709550591.0
|
|
152
|
+
};
|
|
153
|
+
}
|
|
154
|
+
|
|
155
|
+
void test_bool_cast() const
|
|
156
|
+
{
|
|
157
|
+
test_bool_cast_impl<float_batch, int32_batch>("batch bool cast float -> int32");
|
|
158
|
+
test_bool_cast_impl<float_batch, uint32_batch>("batch bool cast float -> uint32");
|
|
159
|
+
test_bool_cast_impl<int32_batch, float_batch>("batch bool cast int32 -> float");
|
|
160
|
+
test_bool_cast_impl<uint32_batch, float_batch>("batch bool cast uint32 -> float");
|
|
161
|
+
test_bool_cast_impl<float_batch, float_batch>("batch bool cast float -> float");
|
|
162
|
+
}
|
|
163
|
+
|
|
164
|
+
void test_cast() const
|
|
165
|
+
{
|
|
166
|
+
for (const auto& test_value : int_test_values)
|
|
167
|
+
{
|
|
168
|
+
test_cast_impl<int8_batch, int8_batch>(test_value, "batch cast int8 -> int8");
|
|
169
|
+
test_cast_impl<int8_batch, uint8_batch>(test_value, "batch cast int8 -> uint8");
|
|
170
|
+
test_cast_impl<uint8_batch, int8_batch>(test_value, "batch cast uint8 -> int8");
|
|
171
|
+
test_cast_impl<uint8_batch, uint8_batch>(test_value, "batch cast uint8 -> uint8");
|
|
172
|
+
|
|
173
|
+
test_cast_impl<int16_batch, int16_batch>(test_value, "batch cast int16 -> int16");
|
|
174
|
+
test_cast_impl<int16_batch, uint16_batch>(test_value, "batch cast int16 -> uint16");
|
|
175
|
+
test_cast_impl<uint16_batch, int16_batch>(test_value, "batch cast uint16 -> int16");
|
|
176
|
+
test_cast_impl<uint16_batch, uint16_batch>(test_value, "batch cast uint16 -> uint16");
|
|
177
|
+
|
|
178
|
+
test_cast_impl<int32_batch, int32_batch>(test_value, "batch cast int32 -> int32");
|
|
179
|
+
test_cast_impl<int32_batch, uint32_batch>(test_value, "batch cast int32 -> uint32");
|
|
180
|
+
test_cast_impl<int32_batch, float_batch>(test_value, "batch cast int32 -> float");
|
|
181
|
+
test_cast_impl<uint32_batch, int32_batch>(test_value, "batch cast uint32 -> int32");
|
|
182
|
+
test_cast_impl<uint32_batch, uint32_batch>(test_value, "batch cast uint32 -> uint32");
|
|
183
|
+
test_cast_impl<uint32_batch, float_batch>(test_value, "batch cast uint32 -> float");
|
|
184
|
+
|
|
185
|
+
test_cast_impl<int64_batch, int64_batch>(test_value, "batch cast int64 -> int64");
|
|
186
|
+
test_cast_impl<int64_batch, uint64_batch>(test_value, "batch cast int64 -> uint64");
|
|
187
|
+
test_cast_impl<int64_batch, double_batch>(test_value, "batch cast int64 -> double");
|
|
188
|
+
test_cast_impl<uint64_batch, int64_batch>(test_value, "batch cast uint64 -> int64");
|
|
189
|
+
test_cast_impl<uint64_batch, uint64_batch>(test_value, "batch cast uint64 -> uint64");
|
|
190
|
+
test_cast_impl<uint64_batch, double_batch>(test_value, "batch cast uint64 -> double");
|
|
191
|
+
}
|
|
192
|
+
|
|
193
|
+
for (const auto& test_value : float_test_values)
|
|
194
|
+
{
|
|
195
|
+
test_cast_impl<float_batch, int32_batch>(test_value, "batch cast float -> int32");
|
|
196
|
+
test_cast_impl<float_batch, uint32_batch>(test_value, "batch cast float -> uint32");
|
|
197
|
+
test_cast_impl<float_batch, float_batch>(test_value, "batch cast float -> float");
|
|
198
|
+
}
|
|
199
|
+
|
|
200
|
+
for (const auto& test_value : double_test_values)
|
|
201
|
+
{
|
|
202
|
+
test_cast_impl<double_batch, int64_batch>(test_value, "batch cast double -> int64");
|
|
203
|
+
test_cast_impl<double_batch, uint64_batch>(test_value, "batch cast double -> uint64");
|
|
204
|
+
test_cast_impl<double_batch, double_batch>(test_value, "batch cast double -> double");
|
|
205
|
+
}
|
|
206
|
+
}
|
|
207
|
+
|
|
208
|
+
#if 0 && XSIMD_X86_INSTR_SET >= XSIMD_X86_AVX_VERSION
|
|
209
|
+
template <size_t Align = A>
|
|
210
|
+
typename std::enable_if<Align >= 32, void>::type test_cast_sizeshift1() const
|
|
211
|
+
{
|
|
212
|
+
for (const auto& test_value : int_test_values)
|
|
213
|
+
{
|
|
214
|
+
test_cast_impl<int8_batch, int16_batch>(test_value, "batch cast int8 -> int16");
|
|
215
|
+
test_cast_impl<int8_batch, uint16_batch>(test_value, "batch cast int8 -> uint16");
|
|
216
|
+
test_cast_impl<uint8_batch, int16_batch>(test_value, "batch cast uint8 -> int16");
|
|
217
|
+
test_cast_impl<uint8_batch, uint16_batch>(test_value, "batch cast uint8 -> uint16");
|
|
218
|
+
|
|
219
|
+
test_cast_impl<int16_batch, int8_batch>(test_value, "batch cast int16 -> int8");
|
|
220
|
+
test_cast_impl<int16_batch, uint8_batch>(test_value, "batch cast int16 -> uint8");
|
|
221
|
+
test_cast_impl<int16_batch, int32_batch>(test_value, "batch cast int16 -> int32");
|
|
222
|
+
test_cast_impl<int16_batch, uint32_batch>(test_value, "batch cast int16 -> uint32");
|
|
223
|
+
test_cast_impl<int16_batch, float_batch>(test_value, "batch cast int16 -> float");
|
|
224
|
+
test_cast_impl<uint16_batch, int8_batch>(test_value, "batch cast uint16 -> int8");
|
|
225
|
+
test_cast_impl<uint16_batch, uint8_batch>(test_value, "batch cast uint16 -> uint8");
|
|
226
|
+
test_cast_impl<uint16_batch, int32_batch>(test_value, "batch cast uint16 -> int32");
|
|
227
|
+
test_cast_impl<uint16_batch, uint32_batch>(test_value, "batch cast uint16 -> uint32");
|
|
228
|
+
test_cast_impl<uint16_batch, float_batch>(test_value, "batch cast uint16 -> float");
|
|
229
|
+
|
|
230
|
+
test_cast_impl<int32_batch, int16_batch>(test_value, "batch cast int32 -> int16");
|
|
231
|
+
test_cast_impl<int32_batch, uint16_batch>(test_value, "batch cast int32 -> uint16");
|
|
232
|
+
test_cast_impl<int32_batch, int64_batch>(test_value, "batch cast int32 -> int64");
|
|
233
|
+
test_cast_impl<int32_batch, uint64_batch>(test_value, "batch cast int32 -> uint64");
|
|
234
|
+
test_cast_impl<int32_batch, double_batch>(test_value, "batch cast int32 -> double");
|
|
235
|
+
test_cast_impl<uint32_batch, int16_batch>(test_value, "batch cast uint32 -> int16");
|
|
236
|
+
test_cast_impl<uint32_batch, uint16_batch>(test_value, "batch cast uint32 -> uint16");
|
|
237
|
+
test_cast_impl<uint32_batch, int64_batch>(test_value, "batch cast uint32 -> int64");
|
|
238
|
+
test_cast_impl<uint32_batch, uint64_batch>(test_value, "batch cast uint32 -> uint64");
|
|
239
|
+
test_cast_impl<uint32_batch, double_batch>(test_value, "batch cast uint32 -> double");
|
|
240
|
+
|
|
241
|
+
test_cast_impl<int64_batch, int32_batch>(test_value, "batch cast int64 -> int32");
|
|
242
|
+
test_cast_impl<int64_batch, uint32_batch>(test_value, "batch cast int64 -> uint32");
|
|
243
|
+
test_cast_impl<int64_batch, float_batch>(test_value, "batch cast int64 -> float");
|
|
244
|
+
test_cast_impl<uint64_batch, int32_batch>(test_value, "batch cast uint64 -> int32");
|
|
245
|
+
test_cast_impl<uint64_batch, uint32_batch>(test_value, "batch cast uint64 -> uint32");
|
|
246
|
+
test_cast_impl<uint64_batch, float_batch>(test_value, "batch cast uint64 -> float");
|
|
247
|
+
}
|
|
248
|
+
|
|
249
|
+
for (const auto& test_value : float_test_values)
|
|
250
|
+
{
|
|
251
|
+
test_cast_impl<float_batch, int16_batch>(test_value, "batch cast float -> int16");
|
|
252
|
+
test_cast_impl<float_batch, uint16_batch>(test_value, "batch cast float -> uint16");
|
|
253
|
+
test_cast_impl<float_batch, int64_batch>(test_value, "batch cast float -> int64");
|
|
254
|
+
test_cast_impl<float_batch, uint64_batch>(test_value, "batch cast float -> uint64");
|
|
255
|
+
test_cast_impl<float_batch, double_batch>(test_value, "batch cast float -> double");
|
|
256
|
+
}
|
|
257
|
+
|
|
258
|
+
for (const auto& test_value : double_test_values)
|
|
259
|
+
{
|
|
260
|
+
test_cast_impl<double_batch, int32_batch>(test_value, "batch cast double -> int32");
|
|
261
|
+
test_cast_impl<double_batch, uint32_batch>(test_value, "batch cast double -> uint32");
|
|
262
|
+
test_cast_impl<double_batch, float_batch>(test_value, "batch cast double -> float");
|
|
263
|
+
}
|
|
264
|
+
}
|
|
265
|
+
|
|
266
|
+
template <size_t Align = A>
|
|
267
|
+
typename std::enable_if<Align < 32, void>::type test_cast_sizeshift1() const
|
|
268
|
+
{
|
|
269
|
+
}
|
|
270
|
+
#endif
|
|
271
|
+
|
|
272
|
+
#if 0 && XSIMD_X86_INSTR_SET >= XSIMD_X86_AVX512_VERSION
|
|
273
|
+
template <size_t Align = A>
|
|
274
|
+
typename std::enable_if<Align >= 64, void>::type test_cast_sizeshift2() const
|
|
275
|
+
{
|
|
276
|
+
for (const auto& test_value : int_test_values)
|
|
277
|
+
{
|
|
278
|
+
test_cast_impl<int8_batch, int32_batch>(test_value, "batch cast int8 -> int32");
|
|
279
|
+
test_cast_impl<int8_batch, uint32_batch>(test_value, "batch cast int8 -> uint32");
|
|
280
|
+
test_cast_impl<int8_batch, float_batch>(test_value, "batch cast int8 -> float");
|
|
281
|
+
test_cast_impl<uint8_batch, int32_batch>(test_value, "batch cast uint8 -> int32");
|
|
282
|
+
test_cast_impl<uint8_batch, uint32_batch>(test_value, "batch cast uint8 -> uint32");
|
|
283
|
+
test_cast_impl<uint8_batch, float_batch>(test_value, "batch cast uint8 -> float");
|
|
284
|
+
|
|
285
|
+
test_cast_impl<int16_batch, int64_batch>(test_value, "batch cast int16 -> int64");
|
|
286
|
+
test_cast_impl<int16_batch, uint64_batch>(test_value, "batch cast int16 -> uint64");
|
|
287
|
+
test_cast_impl<int16_batch, double_batch>(test_value, "batch cast int16 -> double");
|
|
288
|
+
test_cast_impl<uint16_batch, int64_batch>(test_value, "batch cast uint16 -> int64");
|
|
289
|
+
test_cast_impl<uint16_batch, uint64_batch>(test_value, "batch cast uint16 -> uint64");
|
|
290
|
+
test_cast_impl<uint16_batch, double_batch>(test_value, "batch cast uint16 -> double");
|
|
291
|
+
|
|
292
|
+
test_cast_impl<int32_batch, int8_batch>(test_value, "batch cast int32 -> int8");
|
|
293
|
+
test_cast_impl<int32_batch, uint8_batch>(test_value, "batch cast int32 -> uint8");
|
|
294
|
+
test_cast_impl<uint32_batch, int8_batch>(test_value, "batch cast uint32 -> int8");
|
|
295
|
+
test_cast_impl<uint32_batch, uint8_batch>(test_value, "batch cast uint32 -> uint8");
|
|
296
|
+
|
|
297
|
+
test_cast_impl<int64_batch, int16_batch>(test_value, "batch cast int64 -> int16");
|
|
298
|
+
test_cast_impl<int64_batch, uint16_batch>(test_value, "batch cast int64 -> uint16");
|
|
299
|
+
test_cast_impl<uint64_batch, int16_batch>(test_value, "batch cast uint64 -> int16");
|
|
300
|
+
test_cast_impl<uint64_batch, uint16_batch>(test_value, "batch cast uint64 -> uint16");
|
|
301
|
+
}
|
|
302
|
+
|
|
303
|
+
for (const auto& test_value : float_test_values)
|
|
304
|
+
{
|
|
305
|
+
test_cast_impl<float_batch, int8_batch>(test_value, "batch cast float -> int8");
|
|
306
|
+
test_cast_impl<float_batch, uint8_batch>(test_value, "batch cast float -> uint8");
|
|
307
|
+
}
|
|
308
|
+
|
|
309
|
+
for (const auto& test_value : double_test_values)
|
|
310
|
+
{
|
|
311
|
+
test_cast_impl<double_batch, int16_batch>(test_value, "batch cast double -> int16");
|
|
312
|
+
test_cast_impl<double_batch, uint16_batch>(test_value, "batch cast double -> uint16");
|
|
313
|
+
}
|
|
314
|
+
}
|
|
315
|
+
|
|
316
|
+
template <size_t Align = A>
|
|
317
|
+
typename std::enable_if<Align < 64, void>::type test_cast_sizeshift2() const
|
|
318
|
+
{
|
|
319
|
+
}
|
|
320
|
+
#endif
|
|
321
|
+
|
|
322
|
+
private:
|
|
323
|
+
template <class B_in, class B_out, class T>
|
|
324
|
+
void test_cast_impl(T test_value, const std::string& name) const
|
|
325
|
+
{
|
|
326
|
+
using T_in = typename B_in::value_type;
|
|
327
|
+
using T_out = typename B_out::value_type;
|
|
328
|
+
using B_common_in = xsimd::batch<T_in>;
|
|
329
|
+
using B_common_out = xsimd::batch<T_out>;
|
|
330
|
+
|
|
331
|
+
auto clamp = [](T v)
|
|
332
|
+
{
|
|
333
|
+
return static_cast<T_in>(xsimd::min(v, static_cast<T>(std::numeric_limits<T_in>::max() - 1)));
|
|
334
|
+
};
|
|
335
|
+
|
|
336
|
+
T_in in_test_value = clamp(test_value);
|
|
337
|
+
if (detail::is_convertible<T_out>(in_test_value))
|
|
338
|
+
{
|
|
339
|
+
B_common_out res = xsimd::batch_cast<T_out>(B_common_in(in_test_value));
|
|
340
|
+
INFO(name);
|
|
341
|
+
T_out scalar_ref = static_cast<T_out>(in_test_value);
|
|
342
|
+
T_out scalar_res = res.get(0);
|
|
343
|
+
CHECK_SCALAR_EQ(scalar_ref, scalar_res);
|
|
344
|
+
}
|
|
345
|
+
}
|
|
346
|
+
|
|
347
|
+
template <class B_in, class B_out>
|
|
348
|
+
void test_bool_cast_impl(const std::string& name) const
|
|
349
|
+
{
|
|
350
|
+
using T_in = typename B_in::value_type;
|
|
351
|
+
using T_out = typename B_out::value_type;
|
|
352
|
+
using B_common_in = xsimd::batch_bool<T_in>;
|
|
353
|
+
using B_common_out = xsimd::batch_bool<T_out>;
|
|
354
|
+
|
|
355
|
+
B_common_in all_true_in(true);
|
|
356
|
+
B_common_out all_true_res = xsimd::batch_bool_cast<T_out>(all_true_in);
|
|
357
|
+
INFO(name);
|
|
358
|
+
CHECK_SCALAR_EQ(all_true_res.get(0), true);
|
|
359
|
+
|
|
360
|
+
B_common_in all_false_in(false);
|
|
361
|
+
B_common_out all_false_res = xsimd::batch_bool_cast<T_out>(all_false_in);
|
|
362
|
+
INFO(name);
|
|
363
|
+
CHECK_SCALAR_EQ(all_false_res.get(0), false);
|
|
364
|
+
}
|
|
365
|
+
};
|
|
366
|
+
|
|
367
|
+
TEST_CASE_TEMPLATE("[xsimd cast tests]", B, CONVERSION_TYPES)
|
|
368
|
+
{
|
|
369
|
+
batch_cast_test<B> Test;
|
|
370
|
+
|
|
371
|
+
SUBCASE("bool cast")
|
|
372
|
+
{
|
|
373
|
+
Test.test_bool_cast();
|
|
374
|
+
}
|
|
375
|
+
|
|
376
|
+
SUBCASE("cast")
|
|
377
|
+
{
|
|
378
|
+
Test.test_cast();
|
|
379
|
+
}
|
|
380
|
+
}
|
|
381
|
+
#endif
|
|
382
|
+
#if 0 && XSIMD_X86_INSTR_SET >= XSIMD_X86_AVX_VERSION
|
|
383
|
+
TYPED_TEST(batch_cast_test, cast_sizeshift1)
|
|
384
|
+
{
|
|
385
|
+
this->test_cast_sizeshift1();
|
|
386
|
+
}
|
|
387
|
+
#endif
|
|
388
|
+
|
|
389
|
+
#if 0 && XSIMD_X86_INSTR_SET >= XSIMD_X86_AVX512_VERSION
|
|
390
|
+
TYPED_TEST(batch_cast_test, cast_sizeshift2)
|
|
391
|
+
{
|
|
392
|
+
this->test_cast_sizeshift2();
|
|
393
|
+
}
|
|
394
|
+
#endif
|
|
395
|
+
|
|
396
|
+
#if XSIMD_WITH_SSE2
|
|
397
|
+
TEST_CASE_TEMPLATE("[xsimd cast tests]", B, CONVERSION_TYPES)
|
|
398
|
+
{
|
|
399
|
+
SUBCASE("use fastcast")
|
|
400
|
+
{
|
|
401
|
+
using A = xsimd::default_arch;
|
|
402
|
+
static_assert(detail::uses_fast_cast<A, int32_t, float>::value,
|
|
403
|
+
"expected int32 to float conversion to use fast_cast");
|
|
404
|
+
static_assert(detail::uses_fast_cast<A, float, int32_t>::value,
|
|
405
|
+
"expected float to int32 conversion to use fast_cast");
|
|
406
|
+
}
|
|
407
|
+
}
|
|
408
|
+
#endif
|
|
409
|
+
#endif
|