sequenzo 0.1.31__cp310-cp310-macosx_10_9_x86_64.whl

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Files changed (299) hide show
  1. _sequenzo_fastcluster.cpython-310-darwin.so +0 -0
  2. sequenzo/__init__.py +349 -0
  3. sequenzo/big_data/__init__.py +12 -0
  4. sequenzo/big_data/clara/__init__.py +26 -0
  5. sequenzo/big_data/clara/clara.py +476 -0
  6. sequenzo/big_data/clara/utils/__init__.py +27 -0
  7. sequenzo/big_data/clara/utils/aggregatecases.py +92 -0
  8. sequenzo/big_data/clara/utils/davies_bouldin.py +91 -0
  9. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
  10. sequenzo/big_data/clara/utils/wfcmdd.py +205 -0
  11. sequenzo/big_data/clara/visualization.py +88 -0
  12. sequenzo/clustering/KMedoids.py +178 -0
  13. sequenzo/clustering/__init__.py +30 -0
  14. sequenzo/clustering/clustering_c_code.cpython-310-darwin.so +0 -0
  15. sequenzo/clustering/hierarchical_clustering.py +1256 -0
  16. sequenzo/clustering/sequenzo_fastcluster/fastcluster.py +495 -0
  17. sequenzo/clustering/sequenzo_fastcluster/src/fastcluster.cpp +1877 -0
  18. sequenzo/clustering/sequenzo_fastcluster/src/fastcluster_python.cpp +1264 -0
  19. sequenzo/clustering/src/KMedoid.cpp +263 -0
  20. sequenzo/clustering/src/PAM.cpp +237 -0
  21. sequenzo/clustering/src/PAMonce.cpp +265 -0
  22. sequenzo/clustering/src/cluster_quality.cpp +496 -0
  23. sequenzo/clustering/src/cluster_quality.h +128 -0
  24. sequenzo/clustering/src/cluster_quality_backup.cpp +570 -0
  25. sequenzo/clustering/src/module.cpp +228 -0
  26. sequenzo/clustering/src/weightedinertia.cpp +111 -0
  27. sequenzo/clustering/utils/__init__.py +27 -0
  28. sequenzo/clustering/utils/disscenter.py +122 -0
  29. sequenzo/data_preprocessing/__init__.py +22 -0
  30. sequenzo/data_preprocessing/helpers.py +303 -0
  31. sequenzo/datasets/__init__.py +41 -0
  32. sequenzo/datasets/biofam.csv +2001 -0
  33. sequenzo/datasets/biofam_child_domain.csv +2001 -0
  34. sequenzo/datasets/biofam_left_domain.csv +2001 -0
  35. sequenzo/datasets/biofam_married_domain.csv +2001 -0
  36. sequenzo/datasets/chinese_colonial_territories.csv +12 -0
  37. sequenzo/datasets/country_co2_emissions.csv +194 -0
  38. sequenzo/datasets/country_co2_emissions_global_deciles.csv +195 -0
  39. sequenzo/datasets/country_co2_emissions_global_quintiles.csv +195 -0
  40. sequenzo/datasets/country_co2_emissions_local_deciles.csv +195 -0
  41. sequenzo/datasets/country_co2_emissions_local_quintiles.csv +195 -0
  42. sequenzo/datasets/country_gdp_per_capita.csv +194 -0
  43. sequenzo/datasets/dyadic_children.csv +61 -0
  44. sequenzo/datasets/dyadic_parents.csv +61 -0
  45. sequenzo/datasets/mvad.csv +713 -0
  46. sequenzo/datasets/pairfam_activity_by_month.csv +1028 -0
  47. sequenzo/datasets/pairfam_activity_by_year.csv +1028 -0
  48. sequenzo/datasets/pairfam_family_by_month.csv +1028 -0
  49. sequenzo/datasets/pairfam_family_by_year.csv +1028 -0
  50. sequenzo/datasets/political_science_aid_shock.csv +166 -0
  51. sequenzo/datasets/political_science_donor_fragmentation.csv +157 -0
  52. sequenzo/define_sequence_data.py +1400 -0
  53. sequenzo/dissimilarity_measures/__init__.py +31 -0
  54. sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
  55. sequenzo/dissimilarity_measures/get_distance_matrix.py +762 -0
  56. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +246 -0
  57. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +148 -0
  58. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +114 -0
  59. sequenzo/dissimilarity_measures/src/LCPspellDistance.cpp +215 -0
  60. sequenzo/dissimilarity_measures/src/OMdistance.cpp +247 -0
  61. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +281 -0
  62. sequenzo/dissimilarity_measures/src/__init__.py +0 -0
  63. sequenzo/dissimilarity_measures/src/dist2matrix.cpp +63 -0
  64. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  65. sequenzo/dissimilarity_measures/src/module.cpp +40 -0
  66. sequenzo/dissimilarity_measures/src/setup.py +30 -0
  67. sequenzo/dissimilarity_measures/src/utils.h +25 -0
  68. sequenzo/dissimilarity_measures/src/xsimd/.github/cmake-test/main.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/benchmark/main.cpp +159 -0
  70. sequenzo/dissimilarity_measures/src/xsimd/benchmark/xsimd_benchmark.hpp +565 -0
  71. sequenzo/dissimilarity_measures/src/xsimd/docs/source/conf.py +37 -0
  72. sequenzo/dissimilarity_measures/src/xsimd/examples/mandelbrot.cpp +330 -0
  73. sequenzo/dissimilarity_measures/src/xsimd/examples/pico_bench.hpp +246 -0
  74. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +266 -0
  75. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +112 -0
  76. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +323 -0
  77. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +218 -0
  78. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +2583 -0
  79. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +880 -0
  80. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_rounding.hpp +72 -0
  81. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  82. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +978 -0
  83. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +1924 -0
  84. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +1144 -0
  85. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +656 -0
  86. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512cd.hpp +28 -0
  87. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +244 -0
  88. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512er.hpp +20 -0
  89. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +2650 -0
  90. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512ifma.hpp +20 -0
  91. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512pf.hpp +20 -0
  92. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +77 -0
  93. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +131 -0
  94. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512bw.hpp +20 -0
  95. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512vbmi2.hpp +20 -0
  96. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avxvnni.hpp +20 -0
  97. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +24 -0
  98. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +77 -0
  99. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +393 -0
  100. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +788 -0
  101. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +93 -0
  102. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx2.hpp +46 -0
  103. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +97 -0
  104. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +92 -0
  105. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_i8mm_neon64.hpp +17 -0
  106. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +142 -0
  107. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +3142 -0
  108. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +1543 -0
  109. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +1513 -0
  110. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +1260 -0
  111. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +2024 -0
  112. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +67 -0
  113. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_1.hpp +339 -0
  114. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_2.hpp +44 -0
  115. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +186 -0
  116. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +1155 -0
  117. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  118. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +1780 -0
  119. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +240 -0
  120. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +484 -0
  121. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +269 -0
  122. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +27 -0
  123. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/math/xsimd_rem_pio2.hpp +719 -0
  124. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp +349 -0
  125. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp +91 -0
  126. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +55 -0
  127. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +2765 -0
  128. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx2_register.hpp +44 -0
  129. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512bw_register.hpp +51 -0
  130. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512cd_register.hpp +51 -0
  131. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512dq_register.hpp +51 -0
  132. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512er_register.hpp +51 -0
  133. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512f_register.hpp +77 -0
  134. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512ifma_register.hpp +51 -0
  135. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512pf_register.hpp +51 -0
  136. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi2_register.hpp +51 -0
  137. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi_register.hpp +51 -0
  138. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp +54 -0
  139. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512vbmi2_register.hpp +53 -0
  140. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx_register.hpp +64 -0
  141. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avxvnni_register.hpp +44 -0
  142. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +1524 -0
  143. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch_constant.hpp +300 -0
  144. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_common_arch.hpp +47 -0
  145. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_emulated_register.hpp +80 -0
  146. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx2_register.hpp +50 -0
  147. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx_register.hpp +50 -0
  148. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_sse_register.hpp +50 -0
  149. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma4_register.hpp +50 -0
  150. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_i8mm_neon64_register.hpp +55 -0
  151. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon64_register.hpp +55 -0
  152. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon_register.hpp +154 -0
  153. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_register.hpp +94 -0
  154. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +506 -0
  155. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse2_register.hpp +59 -0
  156. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse3_register.hpp +49 -0
  157. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_1_register.hpp +48 -0
  158. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_2_register.hpp +48 -0
  159. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_ssse3_register.hpp +48 -0
  160. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sve_register.hpp +156 -0
  161. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +337 -0
  162. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_utils.hpp +536 -0
  163. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  164. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_wasm_register.hpp +59 -0
  165. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +75 -0
  166. sequenzo/dissimilarity_measures/src/xsimd/test/architectures/dummy.cpp +7 -0
  167. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set.cpp +13 -0
  168. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean.cpp +24 -0
  169. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_aligned.cpp +25 -0
  170. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_arch_independent.cpp +28 -0
  171. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_tag_dispatch.cpp +25 -0
  172. sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_abstract_batches.cpp +7 -0
  173. sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_parametric_batches.cpp +8 -0
  174. sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum.hpp +31 -0
  175. sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_avx2.cpp +3 -0
  176. sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_sse2.cpp +3 -0
  177. sequenzo/dissimilarity_measures/src/xsimd/test/doc/writing_vectorized_code.cpp +11 -0
  178. sequenzo/dissimilarity_measures/src/xsimd/test/main.cpp +31 -0
  179. sequenzo/dissimilarity_measures/src/xsimd/test/test_api.cpp +230 -0
  180. sequenzo/dissimilarity_measures/src/xsimd/test/test_arch.cpp +217 -0
  181. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +183 -0
  182. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +1049 -0
  183. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +508 -0
  184. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +409 -0
  185. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +712 -0
  186. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_constant.cpp +286 -0
  187. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_float.cpp +141 -0
  188. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +365 -0
  189. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +308 -0
  190. sequenzo/dissimilarity_measures/src/xsimd/test/test_bitwise_cast.cpp +222 -0
  191. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_exponential.cpp +226 -0
  192. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_hyperbolic.cpp +183 -0
  193. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_power.cpp +265 -0
  194. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_trigonometric.cpp +236 -0
  195. sequenzo/dissimilarity_measures/src/xsimd/test/test_conversion.cpp +248 -0
  196. sequenzo/dissimilarity_measures/src/xsimd/test/test_custom_default_arch.cpp +28 -0
  197. sequenzo/dissimilarity_measures/src/xsimd/test/test_error_gamma.cpp +170 -0
  198. sequenzo/dissimilarity_measures/src/xsimd/test/test_explicit_batch_instantiation.cpp +32 -0
  199. sequenzo/dissimilarity_measures/src/xsimd/test/test_exponential.cpp +202 -0
  200. sequenzo/dissimilarity_measures/src/xsimd/test/test_extract_pair.cpp +92 -0
  201. sequenzo/dissimilarity_measures/src/xsimd/test/test_fp_manipulation.cpp +77 -0
  202. sequenzo/dissimilarity_measures/src/xsimd/test/test_gnu_source.cpp +30 -0
  203. sequenzo/dissimilarity_measures/src/xsimd/test/test_hyperbolic.cpp +167 -0
  204. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +304 -0
  205. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +61 -0
  206. sequenzo/dissimilarity_measures/src/xsimd/test/test_poly_evaluation.cpp +64 -0
  207. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +184 -0
  208. sequenzo/dissimilarity_measures/src/xsimd/test/test_rounding.cpp +199 -0
  209. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +101 -0
  210. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +760 -0
  211. sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.cpp +4 -0
  212. sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.hpp +34 -0
  213. sequenzo/dissimilarity_measures/src/xsimd/test/test_traits.cpp +172 -0
  214. sequenzo/dissimilarity_measures/src/xsimd/test/test_trigonometric.cpp +208 -0
  215. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +611 -0
  216. sequenzo/dissimilarity_measures/src/xsimd/test/test_wasm/test_wasm_playwright.py +123 -0
  217. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +1460 -0
  218. sequenzo/dissimilarity_measures/utils/__init__.py +16 -0
  219. sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py +44 -0
  220. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
  221. sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
  222. sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
  223. sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
  224. sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
  225. sequenzo/multidomain/__init__.py +23 -0
  226. sequenzo/multidomain/association_between_domains.py +311 -0
  227. sequenzo/multidomain/cat.py +597 -0
  228. sequenzo/multidomain/combt.py +519 -0
  229. sequenzo/multidomain/dat.py +81 -0
  230. sequenzo/multidomain/idcd.py +139 -0
  231. sequenzo/multidomain/linked_polyad.py +292 -0
  232. sequenzo/openmp_setup.py +233 -0
  233. sequenzo/prefix_tree/__init__.py +62 -0
  234. sequenzo/prefix_tree/hub.py +114 -0
  235. sequenzo/prefix_tree/individual_level_indicators.py +1321 -0
  236. sequenzo/prefix_tree/spell_individual_level_indicators.py +580 -0
  237. sequenzo/prefix_tree/spell_level_indicators.py +297 -0
  238. sequenzo/prefix_tree/system_level_indicators.py +544 -0
  239. sequenzo/prefix_tree/utils.py +54 -0
  240. sequenzo/seqhmm/__init__.py +95 -0
  241. sequenzo/seqhmm/advanced_optimization.py +305 -0
  242. sequenzo/seqhmm/bootstrap.py +411 -0
  243. sequenzo/seqhmm/build_hmm.py +142 -0
  244. sequenzo/seqhmm/build_mhmm.py +136 -0
  245. sequenzo/seqhmm/build_nhmm.py +121 -0
  246. sequenzo/seqhmm/fit_mhmm.py +62 -0
  247. sequenzo/seqhmm/fit_model.py +61 -0
  248. sequenzo/seqhmm/fit_nhmm.py +76 -0
  249. sequenzo/seqhmm/formulas.py +289 -0
  250. sequenzo/seqhmm/forward_backward_nhmm.py +276 -0
  251. sequenzo/seqhmm/gradients_nhmm.py +306 -0
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  253. sequenzo/seqhmm/mhmm.py +314 -0
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  255. sequenzo/seqhmm/multichannel_em.py +282 -0
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  257. sequenzo/seqhmm/nhmm.py +270 -0
  258. sequenzo/seqhmm/nhmm_utils.py +191 -0
  259. sequenzo/seqhmm/predict.py +137 -0
  260. sequenzo/seqhmm/predict_mhmm.py +142 -0
  261. sequenzo/seqhmm/simulate.py +878 -0
  262. sequenzo/seqhmm/utils.py +218 -0
  263. sequenzo/seqhmm/visualization.py +910 -0
  264. sequenzo/sequence_characteristics/__init__.py +40 -0
  265. sequenzo/sequence_characteristics/complexity_index.py +49 -0
  266. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +220 -0
  267. sequenzo/sequence_characteristics/plot_characteristics.py +593 -0
  268. sequenzo/sequence_characteristics/simple_characteristics.py +311 -0
  269. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +39 -0
  270. sequenzo/sequence_characteristics/turbulence.py +155 -0
  271. sequenzo/sequence_characteristics/variance_of_spell_durations.py +86 -0
  272. sequenzo/sequence_characteristics/within_sequence_entropy.py +43 -0
  273. sequenzo/suffix_tree/__init__.py +66 -0
  274. sequenzo/suffix_tree/hub.py +114 -0
  275. sequenzo/suffix_tree/individual_level_indicators.py +1679 -0
  276. sequenzo/suffix_tree/spell_individual_level_indicators.py +493 -0
  277. sequenzo/suffix_tree/spell_level_indicators.py +248 -0
  278. sequenzo/suffix_tree/system_level_indicators.py +535 -0
  279. sequenzo/suffix_tree/utils.py +56 -0
  280. sequenzo/version_check.py +283 -0
  281. sequenzo/visualization/__init__.py +29 -0
  282. sequenzo/visualization/plot_mean_time.py +222 -0
  283. sequenzo/visualization/plot_modal_state.py +276 -0
  284. sequenzo/visualization/plot_most_frequent_sequences.py +147 -0
  285. sequenzo/visualization/plot_relative_frequency.py +405 -0
  286. sequenzo/visualization/plot_sequence_index.py +1175 -0
  287. sequenzo/visualization/plot_single_medoid.py +153 -0
  288. sequenzo/visualization/plot_state_distribution.py +651 -0
  289. sequenzo/visualization/plot_transition_matrix.py +190 -0
  290. sequenzo/visualization/utils/__init__.py +23 -0
  291. sequenzo/visualization/utils/utils.py +310 -0
  292. sequenzo/with_event_history_analysis/__init__.py +35 -0
  293. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  294. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  295. sequenzo-0.1.31.dist-info/METADATA +286 -0
  296. sequenzo-0.1.31.dist-info/RECORD +299 -0
  297. sequenzo-0.1.31.dist-info/WHEEL +5 -0
  298. sequenzo-0.1.31.dist-info/licenses/LICENSE +28 -0
  299. sequenzo-0.1.31.dist-info/top_level.txt +2 -0
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410
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414
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417
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420
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421
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422
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428
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429
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436
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439
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441
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456
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518
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519
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520
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521
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522
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523
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524
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525
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526
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527
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528
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529
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530
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531
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532
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533
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534
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535
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536
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537
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538
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539
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540
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541
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542
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543
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544
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545
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546
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547
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548
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549
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550
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551
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552
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553
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554
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555
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556
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557
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558
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559
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560
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561
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562
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563
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564
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565
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566
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567
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568
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569
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570
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571
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572
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573
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574
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575
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576
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577
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578
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579
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580
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581
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582
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583
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584
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585
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586
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587
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588
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589
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590
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591
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592
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593
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594
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595
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596
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597
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598
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599
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600
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601
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602
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603
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605
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606
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607
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608
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610
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611
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612
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613
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614
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615
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616
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617
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618
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619
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620
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621
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622
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623
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624
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625
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626
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627
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628
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629
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630
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631
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632
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633
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634
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635
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636
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637
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638
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639
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640
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641
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642
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643
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644
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645
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646
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647
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648
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649
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650
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651
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652
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653
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654
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655
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656
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657
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658
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659
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660
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661
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662
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663
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664
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665
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666
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667
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668
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669
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670
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671
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672
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673
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674
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675
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677
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678
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679
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680
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681
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682
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683
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684
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685
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686
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687
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688
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689
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690
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691
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692
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693
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694
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695
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696
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697
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698
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699
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702
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704
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705
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706
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707
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708
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709
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710
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711
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712
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713
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714
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715
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716
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717
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718
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719
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720
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721
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722
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723
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724
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725
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726
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727
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728
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729
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730
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731
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732
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733
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734
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735
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736
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737
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738
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739
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740
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741
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742
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743
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744
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745
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746
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747
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748
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749
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750
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751
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752
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753
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754
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755
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756
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757
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758
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759
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760
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761
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762
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763
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764
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765
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766
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767
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768
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769
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770
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771
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772
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773
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774
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775
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776
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777
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778
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779
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780
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781
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782
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783
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784
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785
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786
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787
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788
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789
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790
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791
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792
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793
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794
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795
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796
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797
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798
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799
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800
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801
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802
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803
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804
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805
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806
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807
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808
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809
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810
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811
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812
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813
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814
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815
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816
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817
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818
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819
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820
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821
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822
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823
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824
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825
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826
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827
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828
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829
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830
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831
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832
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833
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834
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835
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836
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837
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838
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839
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840
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841
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842
+ 641,S,S,S,S,S,S,S,S,S,S,S,LAT,LAT,COH,COH,COH,COH,COH,COH,COH,MAR,MAR
843
+ 499,LAT,LAT,LAT,S,S,S,COH,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
844
+ 591,S,S,S,S,S,LAT,LAT,COH,COHc,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
845
+ 612,LAT,LAT,LAT,S,S,S,LAT,LAT,LAT,COH,COH,LAT,LAT,S,S,S,S,LAT,LAT,COHc,COHc,COHc
846
+ 492,S,LAT,S,LAT,COH,COH,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
847
+ 319,LAT,LAT,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR
848
+ 529,S,S,LAT,COH,COHc,COHc,COHc,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
849
+ 449,COH,COH,COH,COH,COH,COH,COH,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
850
+ 276,S,LAT,S,S,S,LAT,COH,COH,COH,COHc,COHc,COHc,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
851
+ 8,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR
852
+ 383,MAR,MAR,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S
853
+ 684,LAT,COH,COH,COH,COH,COH,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
854
+ 117,S,LAT,LAT,LAT,LAT,LAT,S,S,LAT,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
855
+ 504,S,S,S,S,S,S,S,S,S,S,S,S,LAT,COHc,COHc,COHc,COHc,COHc,Sc,Sc,Sc,Sc
856
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857
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858
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859
+ 997,S,S,S,S,S,S,LAT,COH,COH,COH,S,S,S,S,LAT,LAT,COHc,COHc,COHc,COHc,COHc,COHc
860
+ 919,LAT,LAT,LAT,LAT,LAT,COH,COH,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
861
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862
+ 295,LAT,S,COH,COH,COH,COH,COH,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,COHc,COHc,COHc,COHc,COHc,COHc,COHc
863
+ 459,S,S,LAT,LAT,LAT,LAT,COH,COH,COH,COH,COH,COH,COH,COHc,COHc,COHc,COHc,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
864
+ 507,S,S,S,S,S,S,S,S,S,S,S,S,S,LAT,LAT,LAT,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
865
+ 390,LAT,LAT,COH,COH,LAT,LAT,S,LAT,LAT,LAT,COH,COH,COH,COH,LAT,COHc,COHc,COHc,MARc2+,MARc2+,MARc2+,MARc2+
866
+ 155,LAT,LAT,COH,COHc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
867
+ 445,S,S,S,S,S,S,S,S,S,S,COH,COH,COH,COHc,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
868
+ 440,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR
869
+ 729,S,S,S,S,S,S,S,S,S,S,S,S,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
870
+ 885,S,S,S,S,S,S,LAT,LAT,LAT,S,S,COH,LAT,LAT,LAT,LAT,COHc,COHc,COHc,COHc,MARc2+,MARc2+
871
+ 674,LAT,S,S,S,S,S,S,S,LAT,LAT,LAT,COH,COH,COH,COH,LAT,COH,COH,COH,MAR,MAR,MAR
872
+ 752,S,S,S,S,S,S,S,COH,COH,COH,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
873
+ 371,LAT,LAT,LAT,LAT,COH,COH,COH,COH,COH,COH,COHc,COHc,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
874
+ 512,S,S,S,S,S,S,COH,LAT,S,LAT,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH
875
+ 609,LAT,LAT,LAT,LAT,LAT,LAT,LATc,COHc,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
876
+ 526,LAT,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
877
+ 233,S,S,S,S,S,S,LAT,S,S,S,S,S,S,S,S,LAT,LAT,LAT,LAT,LAT,COH,COH
878
+ 59,S,S,S,S,S,LAT,LAT,LAT,S,S,S,S,S,S,COH,COH,COH,COH,COH,LAT,LAT,S
879
+ 436,S,S,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,LATc
880
+ 101,S,S,LAT,LAT,S,S,S,LAT,COH,COH,COH,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
881
+ 784,COH,COH,COH,COH,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
882
+ 493,LAT,S,S,S,S,COH,COH,COH,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+
883
+ 977,S,S,S,S,S,S,LAT,LAT,LAT,COH,COHc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+
884
+ 216,LAT,LAT,LAT,S,S,S,S,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,MARc2+,MARc2+,MARc2+,MARc2+
885
+ 467,LAT,LAT,LAT,LAT,LAT,LAT,MARc1,MARc1,MARc2+,MARc2+,MARc2+,LATc,LATc,LATc,LATc,LATc,LATc,LATc,LATc,LATc,LATc,LATc
886
+ 116,S,S,LAT,S,S,S,S,LAT,LAT,S,LAT,LAT,LAT,S,S,S,S,S,S,S,S,S
887
+ 984,LAT,COH,COH,COH,COH,COH,MAR,MARc1,MARc1,MARc1,MARc1,LATc,LATc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
888
+ 343,S,S,S,S,S,S,COH,COHc,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
889
+ 329,COH,COH,COH,MAR,MAR,MAR,MAR,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH
890
+ 160,S,LAT,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
891
+ 692,S,S,S,LAT,S,S,LAT,LAT,LAT,LAT,LAT,S,COH,COH,COH,COH,COH,MAR,MAR,MAR,MAR,S
892
+ 960,S,S,LAT,LAT,LAT,S,S,LAT,COH,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
893
+ 791,S,S,LAT,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc
894
+ 598,LAT,COH,COH,COH,COH,COH,COH,S,COH,LAT,LAT,LAT,LAT,LATc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
895
+ 854,LAT,LAT,S,S,S,LAT,LAT,LAT,COH,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
896
+ 753,S,LAT,LAT,COH,MARc1,MARc1,MARc1,MARc1,MARc1,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc
897
+ 457,S,S,S,S,S,S,S,LAT,LAT,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
898
+ 300,LAT,LAT,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
899
+ 815,S,S,S,LAT,LAT,COH,COH,COH,COH,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
900
+ 192,LAT,LAT,LAT,S,LAT,COH,COH,COH,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
901
+ 454,LAT,LAT,COH,COH,COH,COH,COH,COH,COH,S,S,S,LAT,COH,COH,MAR,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+
902
+ 358,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,LAT,LAT,MAR,MAR,MARc1,MARc1,MARc1
903
+ 637,COH,COH,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc
904
+ 735,S,S,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,COHc,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
905
+ 134,S,LAT,S,COH,COHc,COHc,COHc,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
906
+ 636,S,S,S,LAT,LAT,LAT,LAT,LAT,LAT,LAT,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
907
+ 129,LAT,S,LAT,LAT,LAT,COH,COH,COH,COH,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
908
+ 539,S,S,S,LAT,LAT,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
909
+ 270,LAT,LAT,LAT,LAT,COH,COH,COHc,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
910
+ 197,S,S,S,S,S,COH,COH,COH,COH,LAT,S,S,S,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
911
+ 718,S,S,S,S,LAT,S,S,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,MAR,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+
912
+ 1012,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
913
+ 157,LAT,LAT,COH,COH,COH,S,S,LAT,Sc,Sc,Sc,Sc,Sc,LATc,LATc,LATc,LATc,LATc,LATc,LATc,MARc1,MARc1
914
+ 247,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,LAT,COHc,COHc,COHc,MARc1
915
+ 76,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S
916
+ 858,S,LAT,LAT,LAT,LAT,LAT,LAT,S,S,COH,COHc,COHc,COHc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
917
+ 832,LAT,LAT,LAT,LAT,COH,COH,COH,COH,COH,COH,LAT,LAT,COH,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1
918
+ 873,S,LAT,LAT,LAT,LAT,LAT,LAT,LAT,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
919
+ 495,S,LAT,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,S,S,S,S,S,S,S,S
920
+ 523,S,S,S,COH,COH,COH,COH,COHc,COHc,COHc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
921
+ 828,S,S,S,S,COH,MAR,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+
922
+ 193,S,S,LAT,LAT,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,Sc,Sc,LATc,LATc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
923
+ 610,S,S,S,S,COH,COH,COH,S,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,MARc2+,MARc2+
924
+ 524,S,S,LAT,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
925
+ 497,LAT,COH,COH,COH,COH,COH,MAR,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
926
+ 879,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,LAT,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc
927
+ 283,LAT,LAT,LAT,S,LAT,LAT,LAT,LAT,S,S,S,LAT,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,S
928
+ 657,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
929
+ 293,S,S,S,S,S,S,S,S,S,COH,COH,COH,COH,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1
930
+ 218,S,LAT,LAT,LAT,LAT,COH,MAR,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,LATc,COHc,COHc,COHc,Sc,Sc
931
+ 46,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COH,COHc,COHc,COHc,COHc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
932
+ 58,S,S,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,Sc,Sc,Sc,Sc,LATc,COHc,COHc
933
+ 222,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S
934
+ 332,S,S,S,S,LAT,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
935
+ 572,S,S,S,S,S,S,LAT,LAT,LAT,COH,COH,COH,COHc,COHc,COHc,COHc,Sc,Sc,Sc,Sc,LATc,LATc
936
+ 863,LAT,LAT,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
937
+ 99,S,S,S,LAT,LAT,LAT,LAT,LAT,LAT,LAT,S,S,LAT,LAT,COH,COH,COH,COHc,COHc,MARc1,MARc1,MARc2+
938
+ 500,LAT,COH,COH,COH,COH,COH,COH,COH,COH,COHc,MARc1,MARc1,LATc,LATc,Sc,Sc,Sc,LATc,LATc,COHc,COHc,COHc
939
+ 628,S,S,S,S,S,S,LAT,LAT,LAT,COH,COH,COH,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
940
+ 32,S,S,S,S,S,S,S,S,LAT,COH,COH,COH,COH,COH,MAR,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+
941
+ 173,LAT,S,S,LAT,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc
942
+ 424,S,S,S,S,S,S,S,S,S,LAT,COH,COH,COH,COH,COH,MAR,MAR,MAR,MAR,MAR,MARc1,MARc1
943
+ 97,S,LAT,LAT,COHc,COHc,COHc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
944
+ 823,LAT,LAT,LATc,COHc,COHc,COHc,MARc1,MARc1,MARc2+,MARc2+,MARc2+,LATc,COHc,COHc,COHc,COHc,COHc,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
945
+ 6,S,S,LAT,COH,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc
946
+ 190,S,S,LAT,S,S,S,S,LAT,S,S,S,S,S,S,LAT,COH,COH,COH,COH,COH,COHc,COHc
947
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948
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949
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950
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951
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952
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953
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954
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955
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956
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957
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958
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959
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960
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961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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972
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973
+ 139,LAT,LAT,S,LAT,COHc,COHc,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,Sc,Sc,Sc,Sc,Sc,Sc,Sc
974
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975
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976
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977
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978
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979
+ 622,S,LAT,COH,COH,COH,COH,COH,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,LATc,LATc,LATc,Sc
980
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981
+ 868,S,S,LAT,LAT,S,S,S,S,Sc,Sc,Sc,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+
982
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983
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984
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985
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986
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987
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988
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989
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990
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991
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992
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993
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994
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995
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996
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997
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998
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999
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1000
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1001
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1002
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1003
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1004
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1005
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1006
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1007
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1008
+ 55,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COHc,COHc,MARc1,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
1009
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1010
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1011
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1012
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1013
+ 54,S,S,S,S,S,S,LAT,S,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,Sc
1014
+ 176,S,S,LAT,LAT,LAT,LAT,COH,COH,COH,S,COH,COH,COH,COH,MAR,MARc1,MARc1,MARc1,MARc2+,MARc2+,MARc2+,MARc2+
1015
+ 901,S,S,S,S,COH,COH,COH,COHc,COHc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,Sc,LATc,Sc,Sc
1016
+ 1015,LAT,COH,COH,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
1017
+ 908,S,S,LAT,LAT,LAT,LAT,LAT,COH,MAR,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1
1018
+ 962,S,LAT,LAT,LAT,COH,COH,COH,COH,COH,COH,MAR,MAR,COH,COH,COH,COHc,COHc,COHc,COHc,MARc1,MARc1,MARc1
1019
+ 793,S,S,S,COH,COH,COH,COH,COH,S,S,LAT,LAT,LAT,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR
1020
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1021
+ 680,LAT,LAT,LAT,LAT,COH,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,COHc,MARc2+,MARc2+,MARc2+,MARc2+,MARc2+
1022
+ 208,S,S,S,S,LAT,LAT,LAT,LAT,LAT,COH,COH,COH,COH,S,S,Sc,COHc,COHc,COHc,COHc,COHc,COHc
1023
+ 350,S,S,S,S,S,LAT,LAT,LAT,COH,COH,COH,COH,MAR,MAR,MARc1,MARc1,MARc1,MARc1,MARc1,MARc1,MARc2+,MARc2+
1024
+ 883,S,COH,COH,MAR,MAR,MAR,MAR,MAR,MAR,MAR,MAR,LAT,LAT,LAT,LAT,LAT,LAT,LAT,LAT,S,S,S
1025
+ 892,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,S,LAT,LAT,LAT,LAT,LAT
1026
+ 345,S,S,S,LAT,COH,S,S,S,Sc,COHc,COHc,COHc,COHc,COHc,COHc,Sc,LATc,COHc,COHc,COHc,COHc,COHc
1027
+ 281,S,S,LAT,COH,COH,COH,COH,COH,LAT,COH,S,S,LAT,LAT,COH,COH,LAT,LAT,COH,COH,COH,MAR
1028
+ 79,S,S,S,S,S,S,S,S,S,S,S,LAT,LAT,COH,COH,COH,COH,COH,COH,COHc,COHc,COHc