sequenzo 0.1.31__cp310-cp310-macosx_10_9_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- _sequenzo_fastcluster.cpython-310-darwin.so +0 -0
- sequenzo/__init__.py +349 -0
- sequenzo/big_data/__init__.py +12 -0
- sequenzo/big_data/clara/__init__.py +26 -0
- sequenzo/big_data/clara/clara.py +476 -0
- sequenzo/big_data/clara/utils/__init__.py +27 -0
- sequenzo/big_data/clara/utils/aggregatecases.py +92 -0
- sequenzo/big_data/clara/utils/davies_bouldin.py +91 -0
- sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
- sequenzo/big_data/clara/utils/wfcmdd.py +205 -0
- sequenzo/big_data/clara/visualization.py +88 -0
- sequenzo/clustering/KMedoids.py +178 -0
- sequenzo/clustering/__init__.py +30 -0
- sequenzo/clustering/clustering_c_code.cpython-310-darwin.so +0 -0
- sequenzo/clustering/hierarchical_clustering.py +1256 -0
- sequenzo/clustering/sequenzo_fastcluster/fastcluster.py +495 -0
- sequenzo/clustering/sequenzo_fastcluster/src/fastcluster.cpp +1877 -0
- sequenzo/clustering/sequenzo_fastcluster/src/fastcluster_python.cpp +1264 -0
- sequenzo/clustering/src/KMedoid.cpp +263 -0
- sequenzo/clustering/src/PAM.cpp +237 -0
- sequenzo/clustering/src/PAMonce.cpp +265 -0
- sequenzo/clustering/src/cluster_quality.cpp +496 -0
- sequenzo/clustering/src/cluster_quality.h +128 -0
- sequenzo/clustering/src/cluster_quality_backup.cpp +570 -0
- sequenzo/clustering/src/module.cpp +228 -0
- sequenzo/clustering/src/weightedinertia.cpp +111 -0
- sequenzo/clustering/utils/__init__.py +27 -0
- sequenzo/clustering/utils/disscenter.py +122 -0
- sequenzo/data_preprocessing/__init__.py +22 -0
- sequenzo/data_preprocessing/helpers.py +303 -0
- sequenzo/datasets/__init__.py +41 -0
- sequenzo/datasets/biofam.csv +2001 -0
- sequenzo/datasets/biofam_child_domain.csv +2001 -0
- sequenzo/datasets/biofam_left_domain.csv +2001 -0
- sequenzo/datasets/biofam_married_domain.csv +2001 -0
- sequenzo/datasets/chinese_colonial_territories.csv +12 -0
- sequenzo/datasets/country_co2_emissions.csv +194 -0
- sequenzo/datasets/country_co2_emissions_global_deciles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_global_quintiles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_local_deciles.csv +195 -0
- sequenzo/datasets/country_co2_emissions_local_quintiles.csv +195 -0
- sequenzo/datasets/country_gdp_per_capita.csv +194 -0
- sequenzo/datasets/dyadic_children.csv +61 -0
- sequenzo/datasets/dyadic_parents.csv +61 -0
- sequenzo/datasets/mvad.csv +713 -0
- sequenzo/datasets/pairfam_activity_by_month.csv +1028 -0
- sequenzo/datasets/pairfam_activity_by_year.csv +1028 -0
- sequenzo/datasets/pairfam_family_by_month.csv +1028 -0
- sequenzo/datasets/pairfam_family_by_year.csv +1028 -0
- sequenzo/datasets/political_science_aid_shock.csv +166 -0
- sequenzo/datasets/political_science_donor_fragmentation.csv +157 -0
- sequenzo/define_sequence_data.py +1400 -0
- sequenzo/dissimilarity_measures/__init__.py +31 -0
- sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +762 -0
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +246 -0
- sequenzo/dissimilarity_measures/src/DHDdistance.cpp +148 -0
- sequenzo/dissimilarity_measures/src/LCPdistance.cpp +114 -0
- sequenzo/dissimilarity_measures/src/LCPspellDistance.cpp +215 -0
- sequenzo/dissimilarity_measures/src/OMdistance.cpp +247 -0
- sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +281 -0
- sequenzo/dissimilarity_measures/src/__init__.py +0 -0
- sequenzo/dissimilarity_measures/src/dist2matrix.cpp +63 -0
- sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
- sequenzo/dissimilarity_measures/src/module.cpp +40 -0
- sequenzo/dissimilarity_measures/src/setup.py +30 -0
- sequenzo/dissimilarity_measures/src/utils.h +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/.github/cmake-test/main.cpp +6 -0
- sequenzo/dissimilarity_measures/src/xsimd/benchmark/main.cpp +159 -0
- sequenzo/dissimilarity_measures/src/xsimd/benchmark/xsimd_benchmark.hpp +565 -0
- sequenzo/dissimilarity_measures/src/xsimd/docs/source/conf.py +37 -0
- sequenzo/dissimilarity_measures/src/xsimd/examples/mandelbrot.cpp +330 -0
- sequenzo/dissimilarity_measures/src/xsimd/examples/pico_bench.hpp +246 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +266 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +112 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +323 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +218 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +2583 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +880 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_rounding.hpp +72 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +978 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +1924 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +1144 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +656 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512cd.hpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +244 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512er.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +2650 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512ifma.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512pf.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +131 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512bw.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512vbmi2.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avxvnni.hpp +20 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +24 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +393 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +788 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +93 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx2.hpp +46 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +97 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +92 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_i8mm_neon64.hpp +17 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +142 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +3142 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +1543 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +1513 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +1260 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +2024 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +67 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_1.hpp +339 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_2.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +186 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +1155 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +1780 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +240 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +484 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +269 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +27 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/math/xsimd_rem_pio2.hpp +719 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp +349 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp +91 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +2765 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx2_register.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512bw_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512cd_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512dq_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512er_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512f_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512ifma_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512pf_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi2_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi_register.hpp +51 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp +54 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512vbmi2_register.hpp +53 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx_register.hpp +64 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avxvnni_register.hpp +44 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +1524 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch_constant.hpp +300 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_common_arch.hpp +47 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_emulated_register.hpp +80 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx2_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_sse_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma4_register.hpp +50 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_i8mm_neon64_register.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon64_register.hpp +55 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon_register.hpp +154 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_register.hpp +94 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +506 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse2_register.hpp +59 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse3_register.hpp +49 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_1_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_2_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_ssse3_register.hpp +48 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sve_register.hpp +156 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +337 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_utils.hpp +536 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_wasm_register.hpp +59 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +75 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/architectures/dummy.cpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set.cpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean.cpp +24 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_aligned.cpp +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_arch_independent.cpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_tag_dispatch.cpp +25 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_abstract_batches.cpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_parametric_batches.cpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum.hpp +31 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_avx2.cpp +3 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_sse2.cpp +3 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/doc/writing_vectorized_code.cpp +11 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/main.cpp +31 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_api.cpp +230 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_arch.cpp +217 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +183 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +1049 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +508 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +409 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +712 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_constant.cpp +286 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_float.cpp +141 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +365 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +308 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_bitwise_cast.cpp +222 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_exponential.cpp +226 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_hyperbolic.cpp +183 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_power.cpp +265 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_trigonometric.cpp +236 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_conversion.cpp +248 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_custom_default_arch.cpp +28 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_error_gamma.cpp +170 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_explicit_batch_instantiation.cpp +32 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_exponential.cpp +202 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_extract_pair.cpp +92 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_fp_manipulation.cpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_gnu_source.cpp +30 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_hyperbolic.cpp +167 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +304 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +61 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_poly_evaluation.cpp +64 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +184 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_rounding.cpp +199 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +101 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +760 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.cpp +4 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.hpp +34 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_traits.cpp +172 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_trigonometric.cpp +208 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +611 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_wasm/test_wasm_playwright.py +123 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +1460 -0
- sequenzo/dissimilarity_measures/utils/__init__.py +16 -0
- sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py +44 -0
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
- sequenzo/multidomain/__init__.py +23 -0
- sequenzo/multidomain/association_between_domains.py +311 -0
- sequenzo/multidomain/cat.py +597 -0
- sequenzo/multidomain/combt.py +519 -0
- sequenzo/multidomain/dat.py +81 -0
- sequenzo/multidomain/idcd.py +139 -0
- sequenzo/multidomain/linked_polyad.py +292 -0
- sequenzo/openmp_setup.py +233 -0
- sequenzo/prefix_tree/__init__.py +62 -0
- sequenzo/prefix_tree/hub.py +114 -0
- sequenzo/prefix_tree/individual_level_indicators.py +1321 -0
- sequenzo/prefix_tree/spell_individual_level_indicators.py +580 -0
- sequenzo/prefix_tree/spell_level_indicators.py +297 -0
- sequenzo/prefix_tree/system_level_indicators.py +544 -0
- sequenzo/prefix_tree/utils.py +54 -0
- sequenzo/seqhmm/__init__.py +95 -0
- sequenzo/seqhmm/advanced_optimization.py +305 -0
- sequenzo/seqhmm/bootstrap.py +411 -0
- sequenzo/seqhmm/build_hmm.py +142 -0
- sequenzo/seqhmm/build_mhmm.py +136 -0
- sequenzo/seqhmm/build_nhmm.py +121 -0
- sequenzo/seqhmm/fit_mhmm.py +62 -0
- sequenzo/seqhmm/fit_model.py +61 -0
- sequenzo/seqhmm/fit_nhmm.py +76 -0
- sequenzo/seqhmm/formulas.py +289 -0
- sequenzo/seqhmm/forward_backward_nhmm.py +276 -0
- sequenzo/seqhmm/gradients_nhmm.py +306 -0
- sequenzo/seqhmm/hmm.py +291 -0
- sequenzo/seqhmm/mhmm.py +314 -0
- sequenzo/seqhmm/model_comparison.py +238 -0
- sequenzo/seqhmm/multichannel_em.py +282 -0
- sequenzo/seqhmm/multichannel_utils.py +138 -0
- sequenzo/seqhmm/nhmm.py +270 -0
- sequenzo/seqhmm/nhmm_utils.py +191 -0
- sequenzo/seqhmm/predict.py +137 -0
- sequenzo/seqhmm/predict_mhmm.py +142 -0
- sequenzo/seqhmm/simulate.py +878 -0
- sequenzo/seqhmm/utils.py +218 -0
- sequenzo/seqhmm/visualization.py +910 -0
- sequenzo/sequence_characteristics/__init__.py +40 -0
- sequenzo/sequence_characteristics/complexity_index.py +49 -0
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +220 -0
- sequenzo/sequence_characteristics/plot_characteristics.py +593 -0
- sequenzo/sequence_characteristics/simple_characteristics.py +311 -0
- sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +39 -0
- sequenzo/sequence_characteristics/turbulence.py +155 -0
- sequenzo/sequence_characteristics/variance_of_spell_durations.py +86 -0
- sequenzo/sequence_characteristics/within_sequence_entropy.py +43 -0
- sequenzo/suffix_tree/__init__.py +66 -0
- sequenzo/suffix_tree/hub.py +114 -0
- sequenzo/suffix_tree/individual_level_indicators.py +1679 -0
- sequenzo/suffix_tree/spell_individual_level_indicators.py +493 -0
- sequenzo/suffix_tree/spell_level_indicators.py +248 -0
- sequenzo/suffix_tree/system_level_indicators.py +535 -0
- sequenzo/suffix_tree/utils.py +56 -0
- sequenzo/version_check.py +283 -0
- sequenzo/visualization/__init__.py +29 -0
- sequenzo/visualization/plot_mean_time.py +222 -0
- sequenzo/visualization/plot_modal_state.py +276 -0
- sequenzo/visualization/plot_most_frequent_sequences.py +147 -0
- sequenzo/visualization/plot_relative_frequency.py +405 -0
- sequenzo/visualization/plot_sequence_index.py +1175 -0
- sequenzo/visualization/plot_single_medoid.py +153 -0
- sequenzo/visualization/plot_state_distribution.py +651 -0
- sequenzo/visualization/plot_transition_matrix.py +190 -0
- sequenzo/visualization/utils/__init__.py +23 -0
- sequenzo/visualization/utils/utils.py +310 -0
- sequenzo/with_event_history_analysis/__init__.py +35 -0
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
- sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
- sequenzo-0.1.31.dist-info/METADATA +286 -0
- sequenzo-0.1.31.dist-info/RECORD +299 -0
- sequenzo-0.1.31.dist-info/WHEEL +5 -0
- sequenzo-0.1.31.dist-info/licenses/LICENSE +28 -0
- sequenzo-0.1.31.dist-info/top_level.txt +2 -0
|
@@ -0,0 +1,44 @@
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/***************************************************************************
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* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
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* Martin Renou *
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* Copyright (c) QuantStack *
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* Copyright (c) Serge Guelton *
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* *
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* Distributed under the terms of the BSD 3-Clause License. *
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* *
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* The full license is in the file LICENSE, distributed with this software. *
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****************************************************************************/
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#ifndef XSIMD_AVX2_REGISTER_HPP
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#define XSIMD_AVX2_REGISTER_HPP
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#include "./xsimd_avx_register.hpp"
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namespace xsimd
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{
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/**
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* @ingroup architectures
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*
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* AVX2 instructions
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*/
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struct avx2 : avx
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{
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static constexpr bool supported() noexcept { return XSIMD_WITH_AVX2; }
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static constexpr bool available() noexcept { return true; }
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static constexpr char const* name() noexcept { return "avx2"; }
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};
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#if XSIMD_WITH_AVX2
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#if !XSIMD_WITH_AVX
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#error "architecture inconsistency: avx2 requires avx"
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#endif
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namespace types
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{
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XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx2, avx);
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}
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#endif
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}
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#endif
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/***************************************************************************
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* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
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* Martin Renou *
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* Copyright (c) QuantStack *
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* Copyright (c) Serge Guelton *
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* *
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* Distributed under the terms of the BSD 3-Clause License. *
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* *
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* The full license is in the file LICENSE, distributed with this software. *
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****************************************************************************/
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#ifndef XSIMD_AVX512BW_REGISTER_HPP
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#define XSIMD_AVX512BW_REGISTER_HPP
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#include "./xsimd_avx512dq_register.hpp"
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namespace xsimd
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{
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/**
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* @ingroup architectures
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*
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* AVX512BW instructions
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*/
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struct avx512bw : avx512dq
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{
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static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512BW; }
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static constexpr bool available() noexcept { return true; }
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static constexpr char const* name() noexcept { return "avx512bw"; }
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};
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#if XSIMD_WITH_AVX512BW
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#if !XSIMD_WITH_AVX512DQ
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#error "architecture inconsistency: avx512bw requires avx512dq"
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#endif
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namespace types
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{
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template <class T>
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struct get_bool_simd_register<T, avx512bw>
|
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{
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using type = simd_avx512_bool_register<T>;
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};
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XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512bw, avx512dq);
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}
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#endif
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}
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#endif
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@@ -0,0 +1,51 @@
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/***************************************************************************
|
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* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
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* Martin Renou *
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* Copyright (c) QuantStack *
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* Copyright (c) Serge Guelton *
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* *
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* Distributed under the terms of the BSD 3-Clause License. *
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* *
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* The full license is in the file LICENSE, distributed with this software. *
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****************************************************************************/
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#ifndef XSIMD_AVX512CD_REGISTER_HPP
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#define XSIMD_AVX512CD_REGISTER_HPP
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#include "./xsimd_avx512f_register.hpp"
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namespace xsimd
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{
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/**
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* @ingroup architectures
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*
|
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* AVX512CD instructions
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*/
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struct avx512cd : avx512f
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{
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static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512CD; }
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static constexpr bool available() noexcept { return true; }
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static constexpr char const* name() noexcept { return "avx512cd"; }
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};
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#if XSIMD_WITH_AVX512CD
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#if !XSIMD_WITH_AVX512F
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#error "architecture inconsistency: avx512bw requires avx512f"
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#endif
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|
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38
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namespace types
|
|
39
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{
|
|
40
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template <class T>
|
|
41
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struct get_bool_simd_register<T, avx512cd>
|
|
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{
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|
43
|
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using type = simd_avx512_bool_register<T>;
|
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44
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};
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|
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46
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XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512cd, avx512f);
|
|
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|
|
48
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}
|
|
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#endif
|
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}
|
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#endif
|
|
@@ -0,0 +1,51 @@
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/***************************************************************************
|
|
2
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* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
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3
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* Martin Renou *
|
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4
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* Copyright (c) QuantStack *
|
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5
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* Copyright (c) Serge Guelton *
|
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* *
|
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7
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* Distributed under the terms of the BSD 3-Clause License. *
|
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* *
|
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9
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* The full license is in the file LICENSE, distributed with this software. *
|
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****************************************************************************/
|
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#ifndef XSIMD_AVX512DQ_REGISTER_HPP
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#define XSIMD_AVX512DQ_REGISTER_HPP
|
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|
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#include "./xsimd_avx512cd_register.hpp"
|
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namespace xsimd
|
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{
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|
|
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/**
|
|
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* @ingroup architectures
|
|
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*
|
|
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* AVX512DQ instructions
|
|
24
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*/
|
|
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struct avx512dq : avx512cd
|
|
26
|
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{
|
|
27
|
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static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512DQ; }
|
|
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|
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static constexpr bool available() noexcept { return true; }
|
|
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static constexpr char const* name() noexcept { return "avx512dq"; }
|
|
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|
+
};
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|
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#if XSIMD_WITH_AVX512DQ
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|
|
34
|
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#if !XSIMD_WITH_AVX512CD
|
|
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|
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#error "architecture inconsistency: avx512dq requires avx512cd"
|
|
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|
+
#endif
|
|
37
|
+
|
|
38
|
+
namespace types
|
|
39
|
+
{
|
|
40
|
+
template <class T>
|
|
41
|
+
struct get_bool_simd_register<T, avx512dq>
|
|
42
|
+
{
|
|
43
|
+
using type = simd_avx512_bool_register<T>;
|
|
44
|
+
};
|
|
45
|
+
|
|
46
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512dq, avx512cd);
|
|
47
|
+
|
|
48
|
+
}
|
|
49
|
+
#endif
|
|
50
|
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}
|
|
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#endif
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512ER_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512ER_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512dq_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
|
|
20
|
+
/**
|
|
21
|
+
* @ingroup architectures
|
|
22
|
+
*
|
|
23
|
+
* AVX512ER instructions
|
|
24
|
+
*/
|
|
25
|
+
struct avx512er : avx512cd
|
|
26
|
+
{
|
|
27
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512ER; }
|
|
28
|
+
static constexpr bool available() noexcept { return true; }
|
|
29
|
+
static constexpr char const* name() noexcept { return "avx512er"; }
|
|
30
|
+
};
|
|
31
|
+
|
|
32
|
+
#if XSIMD_WITH_AVX512ER
|
|
33
|
+
|
|
34
|
+
#if !XSIMD_WITH_AVX512CD
|
|
35
|
+
#error "architecture inconsistency: avx512er requires avx512cd"
|
|
36
|
+
#endif
|
|
37
|
+
|
|
38
|
+
namespace types
|
|
39
|
+
{
|
|
40
|
+
template <class T>
|
|
41
|
+
struct get_bool_simd_register<T, avx512er>
|
|
42
|
+
{
|
|
43
|
+
using type = simd_avx512_bool_register<T>;
|
|
44
|
+
};
|
|
45
|
+
|
|
46
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512er, avx512cd);
|
|
47
|
+
|
|
48
|
+
}
|
|
49
|
+
#endif
|
|
50
|
+
}
|
|
51
|
+
#endif
|
|
@@ -0,0 +1,77 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512F_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512F_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_common_arch.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
|
|
20
|
+
/**
|
|
21
|
+
* @ingroup architectures
|
|
22
|
+
*
|
|
23
|
+
* AVX512F instructions
|
|
24
|
+
*/
|
|
25
|
+
struct avx512f : common
|
|
26
|
+
{
|
|
27
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512F; }
|
|
28
|
+
static constexpr bool available() noexcept { return true; }
|
|
29
|
+
static constexpr std::size_t alignment() noexcept { return 64; }
|
|
30
|
+
static constexpr bool requires_alignment() noexcept { return true; }
|
|
31
|
+
static constexpr char const* name() noexcept { return "avx512f"; }
|
|
32
|
+
};
|
|
33
|
+
|
|
34
|
+
#if XSIMD_WITH_AVX512F
|
|
35
|
+
|
|
36
|
+
#if !XSIMD_WITH_AVX2
|
|
37
|
+
#error "architecture inconsistency: avx512f requires avx2"
|
|
38
|
+
#endif
|
|
39
|
+
|
|
40
|
+
namespace types
|
|
41
|
+
{
|
|
42
|
+
template <class T>
|
|
43
|
+
struct simd_avx512_bool_register
|
|
44
|
+
{
|
|
45
|
+
using register_type = typename std::conditional<
|
|
46
|
+
(sizeof(T) < 4), std::conditional<(sizeof(T) == 1), __mmask64, __mmask32>,
|
|
47
|
+
std::conditional<(sizeof(T) == 4), __mmask16, __mmask8>>::type::type;
|
|
48
|
+
register_type data;
|
|
49
|
+
simd_avx512_bool_register() = default;
|
|
50
|
+
simd_avx512_bool_register(register_type r) { data = r; }
|
|
51
|
+
operator register_type() const noexcept { return data; }
|
|
52
|
+
};
|
|
53
|
+
template <class T>
|
|
54
|
+
struct get_bool_simd_register<T, avx512f>
|
|
55
|
+
{
|
|
56
|
+
using type = simd_avx512_bool_register<T>;
|
|
57
|
+
};
|
|
58
|
+
|
|
59
|
+
XSIMD_DECLARE_SIMD_REGISTER(signed char, avx512f, __m512i);
|
|
60
|
+
XSIMD_DECLARE_SIMD_REGISTER(unsigned char, avx512f, __m512i);
|
|
61
|
+
XSIMD_DECLARE_SIMD_REGISTER(char, avx512f, __m512i);
|
|
62
|
+
XSIMD_DECLARE_SIMD_REGISTER(unsigned short, avx512f, __m512i);
|
|
63
|
+
XSIMD_DECLARE_SIMD_REGISTER(short, avx512f, __m512i);
|
|
64
|
+
XSIMD_DECLARE_SIMD_REGISTER(unsigned int, avx512f, __m512i);
|
|
65
|
+
XSIMD_DECLARE_SIMD_REGISTER(int, avx512f, __m512i);
|
|
66
|
+
XSIMD_DECLARE_SIMD_REGISTER(unsigned long int, avx512f, __m512i);
|
|
67
|
+
XSIMD_DECLARE_SIMD_REGISTER(long int, avx512f, __m512i);
|
|
68
|
+
XSIMD_DECLARE_SIMD_REGISTER(unsigned long long int, avx512f, __m512i);
|
|
69
|
+
XSIMD_DECLARE_SIMD_REGISTER(long long int, avx512f, __m512i);
|
|
70
|
+
XSIMD_DECLARE_SIMD_REGISTER(float, avx512f, __m512);
|
|
71
|
+
XSIMD_DECLARE_SIMD_REGISTER(double, avx512f, __m512d);
|
|
72
|
+
|
|
73
|
+
}
|
|
74
|
+
#endif
|
|
75
|
+
}
|
|
76
|
+
|
|
77
|
+
#endif
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512IFMA_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512IFMA_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512bw_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
|
|
20
|
+
/**
|
|
21
|
+
* @ingroup architectures
|
|
22
|
+
*
|
|
23
|
+
* AVX512IFMA instructions
|
|
24
|
+
*/
|
|
25
|
+
struct avx512ifma : avx512bw
|
|
26
|
+
{
|
|
27
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512IFMA; }
|
|
28
|
+
static constexpr bool available() noexcept { return true; }
|
|
29
|
+
static constexpr char const* name() noexcept { return "avx512ifma"; }
|
|
30
|
+
};
|
|
31
|
+
|
|
32
|
+
#if XSIMD_WITH_AVX512IFMA
|
|
33
|
+
|
|
34
|
+
#if !XSIMD_WITH_AVX512BW
|
|
35
|
+
#error "architecture inconsistency: avx512ifma requires avx512bw"
|
|
36
|
+
#endif
|
|
37
|
+
|
|
38
|
+
namespace types
|
|
39
|
+
{
|
|
40
|
+
template <class T>
|
|
41
|
+
struct get_bool_simd_register<T, avx512ifma>
|
|
42
|
+
{
|
|
43
|
+
using type = simd_avx512_bool_register<T>;
|
|
44
|
+
};
|
|
45
|
+
|
|
46
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512ifma, avx512bw);
|
|
47
|
+
|
|
48
|
+
}
|
|
49
|
+
#endif
|
|
50
|
+
}
|
|
51
|
+
#endif
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512PF_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512PF_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512er_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
|
|
20
|
+
/**
|
|
21
|
+
* @ingroup architectures
|
|
22
|
+
*
|
|
23
|
+
* AVX512BW instructions
|
|
24
|
+
*/
|
|
25
|
+
struct avx512pf : avx512er
|
|
26
|
+
{
|
|
27
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512PF; }
|
|
28
|
+
static constexpr bool available() noexcept { return true; }
|
|
29
|
+
static constexpr char const* name() noexcept { return "avx512pf"; }
|
|
30
|
+
};
|
|
31
|
+
|
|
32
|
+
#if XSIMD_WITH_AVX512PF
|
|
33
|
+
|
|
34
|
+
#if !XSIMD_WITH_AVX512ER
|
|
35
|
+
#error "architecture inconsistency: avx512pf requires avx512er"
|
|
36
|
+
#endif
|
|
37
|
+
|
|
38
|
+
namespace types
|
|
39
|
+
{
|
|
40
|
+
template <class T>
|
|
41
|
+
struct get_bool_simd_register<T, avx512pf>
|
|
42
|
+
{
|
|
43
|
+
using type = simd_avx512_bool_register<T>;
|
|
44
|
+
};
|
|
45
|
+
|
|
46
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512pf, avx512er);
|
|
47
|
+
|
|
48
|
+
}
|
|
49
|
+
#endif
|
|
50
|
+
}
|
|
51
|
+
#endif
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512VBMI2_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512VBMI2_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512vbmi_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
|
|
20
|
+
/**
|
|
21
|
+
* @ingroup architectures
|
|
22
|
+
*
|
|
23
|
+
* AVX512VBMI instructions
|
|
24
|
+
*/
|
|
25
|
+
struct avx512vbmi2 : avx512vbmi
|
|
26
|
+
{
|
|
27
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VBMI2; }
|
|
28
|
+
static constexpr bool available() noexcept { return true; }
|
|
29
|
+
static constexpr char const* name() noexcept { return "avx512vbmi2"; }
|
|
30
|
+
};
|
|
31
|
+
|
|
32
|
+
#if XSIMD_WITH_AVX512VBMI2
|
|
33
|
+
|
|
34
|
+
#if !XSIMD_WITH_AVX512VBMI
|
|
35
|
+
#error "architecture inconsistency: avx512vbmi2 requires avx512vbmi"
|
|
36
|
+
#endif
|
|
37
|
+
|
|
38
|
+
namespace types
|
|
39
|
+
{
|
|
40
|
+
template <class T>
|
|
41
|
+
struct get_bool_simd_register<T, avx512vbmi2>
|
|
42
|
+
{
|
|
43
|
+
using type = simd_avx512_bool_register<T>;
|
|
44
|
+
};
|
|
45
|
+
|
|
46
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vbmi2, avx512vbmi);
|
|
47
|
+
|
|
48
|
+
}
|
|
49
|
+
#endif
|
|
50
|
+
}
|
|
51
|
+
#endif
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512VBMI_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512VBMI_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512ifma_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
|
|
20
|
+
/**
|
|
21
|
+
* @ingroup architectures
|
|
22
|
+
*
|
|
23
|
+
* AVX512VBMI instructions
|
|
24
|
+
*/
|
|
25
|
+
struct avx512vbmi : avx512ifma
|
|
26
|
+
{
|
|
27
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VBMI; }
|
|
28
|
+
static constexpr bool available() noexcept { return true; }
|
|
29
|
+
static constexpr char const* name() noexcept { return "avx512vbmi"; }
|
|
30
|
+
};
|
|
31
|
+
|
|
32
|
+
#if XSIMD_WITH_AVX512VBMI
|
|
33
|
+
|
|
34
|
+
#if !XSIMD_WITH_AVX512IFMA
|
|
35
|
+
#error "architecture inconsistency: avx512vbmi requires avx512ifma"
|
|
36
|
+
#endif
|
|
37
|
+
|
|
38
|
+
namespace types
|
|
39
|
+
{
|
|
40
|
+
template <class T>
|
|
41
|
+
struct get_bool_simd_register<T, avx512vbmi>
|
|
42
|
+
{
|
|
43
|
+
using type = simd_avx512_bool_register<T>;
|
|
44
|
+
};
|
|
45
|
+
|
|
46
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vbmi, avx512ifma);
|
|
47
|
+
|
|
48
|
+
}
|
|
49
|
+
#endif
|
|
50
|
+
}
|
|
51
|
+
#endif
|
sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp
ADDED
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512VNNI_AVX512BW_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512VNNI_AVX512BW_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512bw_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
template <typename arch>
|
|
20
|
+
struct avx512vnni;
|
|
21
|
+
|
|
22
|
+
/**
|
|
23
|
+
* @ingroup architectures
|
|
24
|
+
*
|
|
25
|
+
* AVX512VNNI instructions
|
|
26
|
+
*/
|
|
27
|
+
template <>
|
|
28
|
+
struct avx512vnni<avx512bw> : avx512bw
|
|
29
|
+
{
|
|
30
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VNNI_AVX512BW; }
|
|
31
|
+
static constexpr bool available() noexcept { return true; }
|
|
32
|
+
static constexpr char const* name() noexcept { return "avx512vnni+avx512bw"; }
|
|
33
|
+
};
|
|
34
|
+
|
|
35
|
+
#if XSIMD_WITH_AVX512VNNI_AVX512BW
|
|
36
|
+
|
|
37
|
+
#if !XSIMD_WITH_AVX512BW
|
|
38
|
+
#error "architecture inconsistency: avx512vnni+avx512bw requires avx512bw"
|
|
39
|
+
#endif
|
|
40
|
+
|
|
41
|
+
namespace types
|
|
42
|
+
{
|
|
43
|
+
template <class T>
|
|
44
|
+
struct get_bool_simd_register<T, avx512vnni<avx512bw>>
|
|
45
|
+
{
|
|
46
|
+
using type = simd_avx512_bool_register<T>;
|
|
47
|
+
};
|
|
48
|
+
|
|
49
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vnni<avx512bw>, avx512bw);
|
|
50
|
+
|
|
51
|
+
}
|
|
52
|
+
#endif
|
|
53
|
+
}
|
|
54
|
+
#endif
|
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
/***************************************************************************
|
|
2
|
+
* Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
|
|
3
|
+
* Martin Renou *
|
|
4
|
+
* Copyright (c) QuantStack *
|
|
5
|
+
* Copyright (c) Serge Guelton *
|
|
6
|
+
* *
|
|
7
|
+
* Distributed under the terms of the BSD 3-Clause License. *
|
|
8
|
+
* *
|
|
9
|
+
* The full license is in the file LICENSE, distributed with this software. *
|
|
10
|
+
****************************************************************************/
|
|
11
|
+
|
|
12
|
+
#ifndef XSIMD_AVX512VNNI_AVX512VBMI2_REGISTER_HPP
|
|
13
|
+
#define XSIMD_AVX512VNNI_AVX512VBMI2_REGISTER_HPP
|
|
14
|
+
|
|
15
|
+
#include "./xsimd_avx512vbmi2_register.hpp"
|
|
16
|
+
|
|
17
|
+
namespace xsimd
|
|
18
|
+
{
|
|
19
|
+
template <typename arch>
|
|
20
|
+
struct avx512vnni;
|
|
21
|
+
|
|
22
|
+
/**
|
|
23
|
+
* @ingroup architectures
|
|
24
|
+
*
|
|
25
|
+
* AVX512VNNI instructions
|
|
26
|
+
*/
|
|
27
|
+
template <>
|
|
28
|
+
struct avx512vnni<avx512vbmi2> : avx512vbmi2
|
|
29
|
+
{
|
|
30
|
+
static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VNNI_AVX512VBMI2; }
|
|
31
|
+
static constexpr bool available() noexcept { return true; }
|
|
32
|
+
static constexpr char const* name() noexcept { return "avx512vnni+avx512vbmi2"; }
|
|
33
|
+
};
|
|
34
|
+
|
|
35
|
+
#if XSIMD_WITH_AVX512VNNI_AVX512VBMI2
|
|
36
|
+
|
|
37
|
+
#if !XSIMD_WITH_AVX512VBMI2
|
|
38
|
+
#error "architecture inconsistency: avx512vnni+avx512vbmi2 requires avx512vbmi2"
|
|
39
|
+
#endif
|
|
40
|
+
|
|
41
|
+
namespace types
|
|
42
|
+
{
|
|
43
|
+
template <class T>
|
|
44
|
+
struct get_bool_simd_register<T, avx512vnni<avx512vbmi2>>
|
|
45
|
+
{
|
|
46
|
+
using type = simd_avx512_bool_register<T>;
|
|
47
|
+
};
|
|
48
|
+
|
|
49
|
+
XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vnni<avx512vbmi2>, avx512vbmi2);
|
|
50
|
+
}
|
|
51
|
+
#endif
|
|
52
|
+
}
|
|
53
|
+
#endif
|