sequenzo 0.1.31__cp310-cp310-macosx_10_9_x86_64.whl

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Files changed (299) hide show
  1. _sequenzo_fastcluster.cpython-310-darwin.so +0 -0
  2. sequenzo/__init__.py +349 -0
  3. sequenzo/big_data/__init__.py +12 -0
  4. sequenzo/big_data/clara/__init__.py +26 -0
  5. sequenzo/big_data/clara/clara.py +476 -0
  6. sequenzo/big_data/clara/utils/__init__.py +27 -0
  7. sequenzo/big_data/clara/utils/aggregatecases.py +92 -0
  8. sequenzo/big_data/clara/utils/davies_bouldin.py +91 -0
  9. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-310-darwin.so +0 -0
  10. sequenzo/big_data/clara/utils/wfcmdd.py +205 -0
  11. sequenzo/big_data/clara/visualization.py +88 -0
  12. sequenzo/clustering/KMedoids.py +178 -0
  13. sequenzo/clustering/__init__.py +30 -0
  14. sequenzo/clustering/clustering_c_code.cpython-310-darwin.so +0 -0
  15. sequenzo/clustering/hierarchical_clustering.py +1256 -0
  16. sequenzo/clustering/sequenzo_fastcluster/fastcluster.py +495 -0
  17. sequenzo/clustering/sequenzo_fastcluster/src/fastcluster.cpp +1877 -0
  18. sequenzo/clustering/sequenzo_fastcluster/src/fastcluster_python.cpp +1264 -0
  19. sequenzo/clustering/src/KMedoid.cpp +263 -0
  20. sequenzo/clustering/src/PAM.cpp +237 -0
  21. sequenzo/clustering/src/PAMonce.cpp +265 -0
  22. sequenzo/clustering/src/cluster_quality.cpp +496 -0
  23. sequenzo/clustering/src/cluster_quality.h +128 -0
  24. sequenzo/clustering/src/cluster_quality_backup.cpp +570 -0
  25. sequenzo/clustering/src/module.cpp +228 -0
  26. sequenzo/clustering/src/weightedinertia.cpp +111 -0
  27. sequenzo/clustering/utils/__init__.py +27 -0
  28. sequenzo/clustering/utils/disscenter.py +122 -0
  29. sequenzo/data_preprocessing/__init__.py +22 -0
  30. sequenzo/data_preprocessing/helpers.py +303 -0
  31. sequenzo/datasets/__init__.py +41 -0
  32. sequenzo/datasets/biofam.csv +2001 -0
  33. sequenzo/datasets/biofam_child_domain.csv +2001 -0
  34. sequenzo/datasets/biofam_left_domain.csv +2001 -0
  35. sequenzo/datasets/biofam_married_domain.csv +2001 -0
  36. sequenzo/datasets/chinese_colonial_territories.csv +12 -0
  37. sequenzo/datasets/country_co2_emissions.csv +194 -0
  38. sequenzo/datasets/country_co2_emissions_global_deciles.csv +195 -0
  39. sequenzo/datasets/country_co2_emissions_global_quintiles.csv +195 -0
  40. sequenzo/datasets/country_co2_emissions_local_deciles.csv +195 -0
  41. sequenzo/datasets/country_co2_emissions_local_quintiles.csv +195 -0
  42. sequenzo/datasets/country_gdp_per_capita.csv +194 -0
  43. sequenzo/datasets/dyadic_children.csv +61 -0
  44. sequenzo/datasets/dyadic_parents.csv +61 -0
  45. sequenzo/datasets/mvad.csv +713 -0
  46. sequenzo/datasets/pairfam_activity_by_month.csv +1028 -0
  47. sequenzo/datasets/pairfam_activity_by_year.csv +1028 -0
  48. sequenzo/datasets/pairfam_family_by_month.csv +1028 -0
  49. sequenzo/datasets/pairfam_family_by_year.csv +1028 -0
  50. sequenzo/datasets/political_science_aid_shock.csv +166 -0
  51. sequenzo/datasets/political_science_donor_fragmentation.csv +157 -0
  52. sequenzo/define_sequence_data.py +1400 -0
  53. sequenzo/dissimilarity_measures/__init__.py +31 -0
  54. sequenzo/dissimilarity_measures/c_code.cpython-310-darwin.so +0 -0
  55. sequenzo/dissimilarity_measures/get_distance_matrix.py +762 -0
  56. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +246 -0
  57. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +148 -0
  58. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +114 -0
  59. sequenzo/dissimilarity_measures/src/LCPspellDistance.cpp +215 -0
  60. sequenzo/dissimilarity_measures/src/OMdistance.cpp +247 -0
  61. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +281 -0
  62. sequenzo/dissimilarity_measures/src/__init__.py +0 -0
  63. sequenzo/dissimilarity_measures/src/dist2matrix.cpp +63 -0
  64. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  65. sequenzo/dissimilarity_measures/src/module.cpp +40 -0
  66. sequenzo/dissimilarity_measures/src/setup.py +30 -0
  67. sequenzo/dissimilarity_measures/src/utils.h +25 -0
  68. sequenzo/dissimilarity_measures/src/xsimd/.github/cmake-test/main.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/benchmark/main.cpp +159 -0
  70. sequenzo/dissimilarity_measures/src/xsimd/benchmark/xsimd_benchmark.hpp +565 -0
  71. sequenzo/dissimilarity_measures/src/xsimd/docs/source/conf.py +37 -0
  72. sequenzo/dissimilarity_measures/src/xsimd/examples/mandelbrot.cpp +330 -0
  73. sequenzo/dissimilarity_measures/src/xsimd/examples/pico_bench.hpp +246 -0
  74. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +266 -0
  75. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +112 -0
  76. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +323 -0
  77. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +218 -0
  78. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +2583 -0
  79. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +880 -0
  80. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_rounding.hpp +72 -0
  81. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  82. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +978 -0
  83. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +1924 -0
  84. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +1144 -0
  85. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +656 -0
  86. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512cd.hpp +28 -0
  87. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +244 -0
  88. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512er.hpp +20 -0
  89. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +2650 -0
  90. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512ifma.hpp +20 -0
  91. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512pf.hpp +20 -0
  92. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +77 -0
  93. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +131 -0
  94. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512bw.hpp +20 -0
  95. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vnni_avx512vbmi2.hpp +20 -0
  96. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avxvnni.hpp +20 -0
  97. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +24 -0
  98. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +77 -0
  99. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +393 -0
  100. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +788 -0
  101. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +93 -0
  102. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx2.hpp +46 -0
  103. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +97 -0
  104. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +92 -0
  105. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_i8mm_neon64.hpp +17 -0
  106. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +142 -0
  107. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +3142 -0
  108. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +1543 -0
  109. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +1513 -0
  110. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +1260 -0
  111. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +2024 -0
  112. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +67 -0
  113. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_1.hpp +339 -0
  114. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse4_2.hpp +44 -0
  115. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +186 -0
  116. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +1155 -0
  117. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  118. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +1780 -0
  119. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +240 -0
  120. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +484 -0
  121. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +269 -0
  122. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +27 -0
  123. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/math/xsimd_rem_pio2.hpp +719 -0
  124. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_aligned_allocator.hpp +349 -0
  125. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/memory/xsimd_alignment.hpp +91 -0
  126. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +55 -0
  127. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +2765 -0
  128. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx2_register.hpp +44 -0
  129. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512bw_register.hpp +51 -0
  130. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512cd_register.hpp +51 -0
  131. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512dq_register.hpp +51 -0
  132. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512er_register.hpp +51 -0
  133. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512f_register.hpp +77 -0
  134. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512ifma_register.hpp +51 -0
  135. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512pf_register.hpp +51 -0
  136. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi2_register.hpp +51 -0
  137. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vbmi_register.hpp +51 -0
  138. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512bw_register.hpp +54 -0
  139. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx512vnni_avx512vbmi2_register.hpp +53 -0
  140. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avx_register.hpp +64 -0
  141. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_avxvnni_register.hpp +44 -0
  142. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +1524 -0
  143. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch_constant.hpp +300 -0
  144. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_common_arch.hpp +47 -0
  145. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_emulated_register.hpp +80 -0
  146. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx2_register.hpp +50 -0
  147. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_avx_register.hpp +50 -0
  148. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma3_sse_register.hpp +50 -0
  149. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_fma4_register.hpp +50 -0
  150. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_i8mm_neon64_register.hpp +55 -0
  151. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon64_register.hpp +55 -0
  152. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_neon_register.hpp +154 -0
  153. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_register.hpp +94 -0
  154. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +506 -0
  155. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse2_register.hpp +59 -0
  156. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse3_register.hpp +49 -0
  157. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_1_register.hpp +48 -0
  158. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sse4_2_register.hpp +48 -0
  159. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_ssse3_register.hpp +48 -0
  160. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_sve_register.hpp +156 -0
  161. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +337 -0
  162. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_utils.hpp +536 -0
  163. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  164. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_wasm_register.hpp +59 -0
  165. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +75 -0
  166. sequenzo/dissimilarity_measures/src/xsimd/test/architectures/dummy.cpp +7 -0
  167. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set.cpp +13 -0
  168. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean.cpp +24 -0
  169. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_aligned.cpp +25 -0
  170. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_arch_independent.cpp +28 -0
  171. sequenzo/dissimilarity_measures/src/xsimd/test/doc/explicit_use_of_an_instruction_set_mean_tag_dispatch.cpp +25 -0
  172. sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_abstract_batches.cpp +7 -0
  173. sequenzo/dissimilarity_measures/src/xsimd/test/doc/manipulating_parametric_batches.cpp +8 -0
  174. sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum.hpp +31 -0
  175. sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_avx2.cpp +3 -0
  176. sequenzo/dissimilarity_measures/src/xsimd/test/doc/sum_sse2.cpp +3 -0
  177. sequenzo/dissimilarity_measures/src/xsimd/test/doc/writing_vectorized_code.cpp +11 -0
  178. sequenzo/dissimilarity_measures/src/xsimd/test/main.cpp +31 -0
  179. sequenzo/dissimilarity_measures/src/xsimd/test/test_api.cpp +230 -0
  180. sequenzo/dissimilarity_measures/src/xsimd/test/test_arch.cpp +217 -0
  181. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +183 -0
  182. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +1049 -0
  183. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +508 -0
  184. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +409 -0
  185. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +712 -0
  186. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_constant.cpp +286 -0
  187. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_float.cpp +141 -0
  188. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +365 -0
  189. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +308 -0
  190. sequenzo/dissimilarity_measures/src/xsimd/test/test_bitwise_cast.cpp +222 -0
  191. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_exponential.cpp +226 -0
  192. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_hyperbolic.cpp +183 -0
  193. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_power.cpp +265 -0
  194. sequenzo/dissimilarity_measures/src/xsimd/test/test_complex_trigonometric.cpp +236 -0
  195. sequenzo/dissimilarity_measures/src/xsimd/test/test_conversion.cpp +248 -0
  196. sequenzo/dissimilarity_measures/src/xsimd/test/test_custom_default_arch.cpp +28 -0
  197. sequenzo/dissimilarity_measures/src/xsimd/test/test_error_gamma.cpp +170 -0
  198. sequenzo/dissimilarity_measures/src/xsimd/test/test_explicit_batch_instantiation.cpp +32 -0
  199. sequenzo/dissimilarity_measures/src/xsimd/test/test_exponential.cpp +202 -0
  200. sequenzo/dissimilarity_measures/src/xsimd/test/test_extract_pair.cpp +92 -0
  201. sequenzo/dissimilarity_measures/src/xsimd/test/test_fp_manipulation.cpp +77 -0
  202. sequenzo/dissimilarity_measures/src/xsimd/test/test_gnu_source.cpp +30 -0
  203. sequenzo/dissimilarity_measures/src/xsimd/test/test_hyperbolic.cpp +167 -0
  204. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +304 -0
  205. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +61 -0
  206. sequenzo/dissimilarity_measures/src/xsimd/test/test_poly_evaluation.cpp +64 -0
  207. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +184 -0
  208. sequenzo/dissimilarity_measures/src/xsimd/test/test_rounding.cpp +199 -0
  209. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +101 -0
  210. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +760 -0
  211. sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.cpp +4 -0
  212. sequenzo/dissimilarity_measures/src/xsimd/test/test_sum.hpp +34 -0
  213. sequenzo/dissimilarity_measures/src/xsimd/test/test_traits.cpp +172 -0
  214. sequenzo/dissimilarity_measures/src/xsimd/test/test_trigonometric.cpp +208 -0
  215. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +611 -0
  216. sequenzo/dissimilarity_measures/src/xsimd/test/test_wasm/test_wasm_playwright.py +123 -0
  217. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +1460 -0
  218. sequenzo/dissimilarity_measures/utils/__init__.py +16 -0
  219. sequenzo/dissimilarity_measures/utils/get_LCP_length_for_2_seq.py +44 -0
  220. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-310-darwin.so +0 -0
  221. sequenzo/dissimilarity_measures/utils/seqconc.cpython-310-darwin.so +0 -0
  222. sequenzo/dissimilarity_measures/utils/seqdss.cpython-310-darwin.so +0 -0
  223. sequenzo/dissimilarity_measures/utils/seqdur.cpython-310-darwin.so +0 -0
  224. sequenzo/dissimilarity_measures/utils/seqlength.cpython-310-darwin.so +0 -0
  225. sequenzo/multidomain/__init__.py +23 -0
  226. sequenzo/multidomain/association_between_domains.py +311 -0
  227. sequenzo/multidomain/cat.py +597 -0
  228. sequenzo/multidomain/combt.py +519 -0
  229. sequenzo/multidomain/dat.py +81 -0
  230. sequenzo/multidomain/idcd.py +139 -0
  231. sequenzo/multidomain/linked_polyad.py +292 -0
  232. sequenzo/openmp_setup.py +233 -0
  233. sequenzo/prefix_tree/__init__.py +62 -0
  234. sequenzo/prefix_tree/hub.py +114 -0
  235. sequenzo/prefix_tree/individual_level_indicators.py +1321 -0
  236. sequenzo/prefix_tree/spell_individual_level_indicators.py +580 -0
  237. sequenzo/prefix_tree/spell_level_indicators.py +297 -0
  238. sequenzo/prefix_tree/system_level_indicators.py +544 -0
  239. sequenzo/prefix_tree/utils.py +54 -0
  240. sequenzo/seqhmm/__init__.py +95 -0
  241. sequenzo/seqhmm/advanced_optimization.py +305 -0
  242. sequenzo/seqhmm/bootstrap.py +411 -0
  243. sequenzo/seqhmm/build_hmm.py +142 -0
  244. sequenzo/seqhmm/build_mhmm.py +136 -0
  245. sequenzo/seqhmm/build_nhmm.py +121 -0
  246. sequenzo/seqhmm/fit_mhmm.py +62 -0
  247. sequenzo/seqhmm/fit_model.py +61 -0
  248. sequenzo/seqhmm/fit_nhmm.py +76 -0
  249. sequenzo/seqhmm/formulas.py +289 -0
  250. sequenzo/seqhmm/forward_backward_nhmm.py +276 -0
  251. sequenzo/seqhmm/gradients_nhmm.py +306 -0
  252. sequenzo/seqhmm/hmm.py +291 -0
  253. sequenzo/seqhmm/mhmm.py +314 -0
  254. sequenzo/seqhmm/model_comparison.py +238 -0
  255. sequenzo/seqhmm/multichannel_em.py +282 -0
  256. sequenzo/seqhmm/multichannel_utils.py +138 -0
  257. sequenzo/seqhmm/nhmm.py +270 -0
  258. sequenzo/seqhmm/nhmm_utils.py +191 -0
  259. sequenzo/seqhmm/predict.py +137 -0
  260. sequenzo/seqhmm/predict_mhmm.py +142 -0
  261. sequenzo/seqhmm/simulate.py +878 -0
  262. sequenzo/seqhmm/utils.py +218 -0
  263. sequenzo/seqhmm/visualization.py +910 -0
  264. sequenzo/sequence_characteristics/__init__.py +40 -0
  265. sequenzo/sequence_characteristics/complexity_index.py +49 -0
  266. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +220 -0
  267. sequenzo/sequence_characteristics/plot_characteristics.py +593 -0
  268. sequenzo/sequence_characteristics/simple_characteristics.py +311 -0
  269. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +39 -0
  270. sequenzo/sequence_characteristics/turbulence.py +155 -0
  271. sequenzo/sequence_characteristics/variance_of_spell_durations.py +86 -0
  272. sequenzo/sequence_characteristics/within_sequence_entropy.py +43 -0
  273. sequenzo/suffix_tree/__init__.py +66 -0
  274. sequenzo/suffix_tree/hub.py +114 -0
  275. sequenzo/suffix_tree/individual_level_indicators.py +1679 -0
  276. sequenzo/suffix_tree/spell_individual_level_indicators.py +493 -0
  277. sequenzo/suffix_tree/spell_level_indicators.py +248 -0
  278. sequenzo/suffix_tree/system_level_indicators.py +535 -0
  279. sequenzo/suffix_tree/utils.py +56 -0
  280. sequenzo/version_check.py +283 -0
  281. sequenzo/visualization/__init__.py +29 -0
  282. sequenzo/visualization/plot_mean_time.py +222 -0
  283. sequenzo/visualization/plot_modal_state.py +276 -0
  284. sequenzo/visualization/plot_most_frequent_sequences.py +147 -0
  285. sequenzo/visualization/plot_relative_frequency.py +405 -0
  286. sequenzo/visualization/plot_sequence_index.py +1175 -0
  287. sequenzo/visualization/plot_single_medoid.py +153 -0
  288. sequenzo/visualization/plot_state_distribution.py +651 -0
  289. sequenzo/visualization/plot_transition_matrix.py +190 -0
  290. sequenzo/visualization/utils/__init__.py +23 -0
  291. sequenzo/visualization/utils/utils.py +310 -0
  292. sequenzo/with_event_history_analysis/__init__.py +35 -0
  293. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  294. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  295. sequenzo-0.1.31.dist-info/METADATA +286 -0
  296. sequenzo-0.1.31.dist-info/RECORD +299 -0
  297. sequenzo-0.1.31.dist-info/WHEEL +5 -0
  298. sequenzo-0.1.31.dist-info/licenses/LICENSE +28 -0
  299. sequenzo-0.1.31.dist-info/top_level.txt +2 -0
@@ -0,0 +1,44 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX2_REGISTER_HPP
13
+ #define XSIMD_AVX2_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+ /**
20
+ * @ingroup architectures
21
+ *
22
+ * AVX2 instructions
23
+ */
24
+ struct avx2 : avx
25
+ {
26
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX2; }
27
+ static constexpr bool available() noexcept { return true; }
28
+ static constexpr char const* name() noexcept { return "avx2"; }
29
+ };
30
+
31
+ #if XSIMD_WITH_AVX2
32
+
33
+ #if !XSIMD_WITH_AVX
34
+ #error "architecture inconsistency: avx2 requires avx"
35
+ #endif
36
+
37
+ namespace types
38
+ {
39
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx2, avx);
40
+ }
41
+ #endif
42
+ }
43
+
44
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512BW_REGISTER_HPP
13
+ #define XSIMD_AVX512BW_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512dq_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512BW instructions
24
+ */
25
+ struct avx512bw : avx512dq
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512BW; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512bw"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512BW
33
+
34
+ #if !XSIMD_WITH_AVX512DQ
35
+ #error "architecture inconsistency: avx512bw requires avx512dq"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512bw>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512bw, avx512dq);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512CD_REGISTER_HPP
13
+ #define XSIMD_AVX512CD_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512f_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512CD instructions
24
+ */
25
+ struct avx512cd : avx512f
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512CD; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512cd"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512CD
33
+
34
+ #if !XSIMD_WITH_AVX512F
35
+ #error "architecture inconsistency: avx512bw requires avx512f"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512cd>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512cd, avx512f);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512DQ_REGISTER_HPP
13
+ #define XSIMD_AVX512DQ_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512cd_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512DQ instructions
24
+ */
25
+ struct avx512dq : avx512cd
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512DQ; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512dq"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512DQ
33
+
34
+ #if !XSIMD_WITH_AVX512CD
35
+ #error "architecture inconsistency: avx512dq requires avx512cd"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512dq>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512dq, avx512cd);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512ER_REGISTER_HPP
13
+ #define XSIMD_AVX512ER_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512dq_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512ER instructions
24
+ */
25
+ struct avx512er : avx512cd
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512ER; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512er"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512ER
33
+
34
+ #if !XSIMD_WITH_AVX512CD
35
+ #error "architecture inconsistency: avx512er requires avx512cd"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512er>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512er, avx512cd);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,77 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512F_REGISTER_HPP
13
+ #define XSIMD_AVX512F_REGISTER_HPP
14
+
15
+ #include "./xsimd_common_arch.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512F instructions
24
+ */
25
+ struct avx512f : common
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512F; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr std::size_t alignment() noexcept { return 64; }
30
+ static constexpr bool requires_alignment() noexcept { return true; }
31
+ static constexpr char const* name() noexcept { return "avx512f"; }
32
+ };
33
+
34
+ #if XSIMD_WITH_AVX512F
35
+
36
+ #if !XSIMD_WITH_AVX2
37
+ #error "architecture inconsistency: avx512f requires avx2"
38
+ #endif
39
+
40
+ namespace types
41
+ {
42
+ template <class T>
43
+ struct simd_avx512_bool_register
44
+ {
45
+ using register_type = typename std::conditional<
46
+ (sizeof(T) < 4), std::conditional<(sizeof(T) == 1), __mmask64, __mmask32>,
47
+ std::conditional<(sizeof(T) == 4), __mmask16, __mmask8>>::type::type;
48
+ register_type data;
49
+ simd_avx512_bool_register() = default;
50
+ simd_avx512_bool_register(register_type r) { data = r; }
51
+ operator register_type() const noexcept { return data; }
52
+ };
53
+ template <class T>
54
+ struct get_bool_simd_register<T, avx512f>
55
+ {
56
+ using type = simd_avx512_bool_register<T>;
57
+ };
58
+
59
+ XSIMD_DECLARE_SIMD_REGISTER(signed char, avx512f, __m512i);
60
+ XSIMD_DECLARE_SIMD_REGISTER(unsigned char, avx512f, __m512i);
61
+ XSIMD_DECLARE_SIMD_REGISTER(char, avx512f, __m512i);
62
+ XSIMD_DECLARE_SIMD_REGISTER(unsigned short, avx512f, __m512i);
63
+ XSIMD_DECLARE_SIMD_REGISTER(short, avx512f, __m512i);
64
+ XSIMD_DECLARE_SIMD_REGISTER(unsigned int, avx512f, __m512i);
65
+ XSIMD_DECLARE_SIMD_REGISTER(int, avx512f, __m512i);
66
+ XSIMD_DECLARE_SIMD_REGISTER(unsigned long int, avx512f, __m512i);
67
+ XSIMD_DECLARE_SIMD_REGISTER(long int, avx512f, __m512i);
68
+ XSIMD_DECLARE_SIMD_REGISTER(unsigned long long int, avx512f, __m512i);
69
+ XSIMD_DECLARE_SIMD_REGISTER(long long int, avx512f, __m512i);
70
+ XSIMD_DECLARE_SIMD_REGISTER(float, avx512f, __m512);
71
+ XSIMD_DECLARE_SIMD_REGISTER(double, avx512f, __m512d);
72
+
73
+ }
74
+ #endif
75
+ }
76
+
77
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512IFMA_REGISTER_HPP
13
+ #define XSIMD_AVX512IFMA_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512bw_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512IFMA instructions
24
+ */
25
+ struct avx512ifma : avx512bw
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512IFMA; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512ifma"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512IFMA
33
+
34
+ #if !XSIMD_WITH_AVX512BW
35
+ #error "architecture inconsistency: avx512ifma requires avx512bw"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512ifma>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512ifma, avx512bw);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512PF_REGISTER_HPP
13
+ #define XSIMD_AVX512PF_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512er_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512BW instructions
24
+ */
25
+ struct avx512pf : avx512er
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512PF; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512pf"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512PF
33
+
34
+ #if !XSIMD_WITH_AVX512ER
35
+ #error "architecture inconsistency: avx512pf requires avx512er"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512pf>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512pf, avx512er);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512VBMI2_REGISTER_HPP
13
+ #define XSIMD_AVX512VBMI2_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512vbmi_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512VBMI instructions
24
+ */
25
+ struct avx512vbmi2 : avx512vbmi
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VBMI2; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512vbmi2"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512VBMI2
33
+
34
+ #if !XSIMD_WITH_AVX512VBMI
35
+ #error "architecture inconsistency: avx512vbmi2 requires avx512vbmi"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512vbmi2>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vbmi2, avx512vbmi);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,51 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512VBMI_REGISTER_HPP
13
+ #define XSIMD_AVX512VBMI_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512ifma_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+
20
+ /**
21
+ * @ingroup architectures
22
+ *
23
+ * AVX512VBMI instructions
24
+ */
25
+ struct avx512vbmi : avx512ifma
26
+ {
27
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VBMI; }
28
+ static constexpr bool available() noexcept { return true; }
29
+ static constexpr char const* name() noexcept { return "avx512vbmi"; }
30
+ };
31
+
32
+ #if XSIMD_WITH_AVX512VBMI
33
+
34
+ #if !XSIMD_WITH_AVX512IFMA
35
+ #error "architecture inconsistency: avx512vbmi requires avx512ifma"
36
+ #endif
37
+
38
+ namespace types
39
+ {
40
+ template <class T>
41
+ struct get_bool_simd_register<T, avx512vbmi>
42
+ {
43
+ using type = simd_avx512_bool_register<T>;
44
+ };
45
+
46
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vbmi, avx512ifma);
47
+
48
+ }
49
+ #endif
50
+ }
51
+ #endif
@@ -0,0 +1,54 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512VNNI_AVX512BW_REGISTER_HPP
13
+ #define XSIMD_AVX512VNNI_AVX512BW_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512bw_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+ template <typename arch>
20
+ struct avx512vnni;
21
+
22
+ /**
23
+ * @ingroup architectures
24
+ *
25
+ * AVX512VNNI instructions
26
+ */
27
+ template <>
28
+ struct avx512vnni<avx512bw> : avx512bw
29
+ {
30
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VNNI_AVX512BW; }
31
+ static constexpr bool available() noexcept { return true; }
32
+ static constexpr char const* name() noexcept { return "avx512vnni+avx512bw"; }
33
+ };
34
+
35
+ #if XSIMD_WITH_AVX512VNNI_AVX512BW
36
+
37
+ #if !XSIMD_WITH_AVX512BW
38
+ #error "architecture inconsistency: avx512vnni+avx512bw requires avx512bw"
39
+ #endif
40
+
41
+ namespace types
42
+ {
43
+ template <class T>
44
+ struct get_bool_simd_register<T, avx512vnni<avx512bw>>
45
+ {
46
+ using type = simd_avx512_bool_register<T>;
47
+ };
48
+
49
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vnni<avx512bw>, avx512bw);
50
+
51
+ }
52
+ #endif
53
+ }
54
+ #endif
@@ -0,0 +1,53 @@
1
+ /***************************************************************************
2
+ * Copyright (c) Johan Mabille, Sylvain Corlay, Wolf Vollprecht and *
3
+ * Martin Renou *
4
+ * Copyright (c) QuantStack *
5
+ * Copyright (c) Serge Guelton *
6
+ * *
7
+ * Distributed under the terms of the BSD 3-Clause License. *
8
+ * *
9
+ * The full license is in the file LICENSE, distributed with this software. *
10
+ ****************************************************************************/
11
+
12
+ #ifndef XSIMD_AVX512VNNI_AVX512VBMI2_REGISTER_HPP
13
+ #define XSIMD_AVX512VNNI_AVX512VBMI2_REGISTER_HPP
14
+
15
+ #include "./xsimd_avx512vbmi2_register.hpp"
16
+
17
+ namespace xsimd
18
+ {
19
+ template <typename arch>
20
+ struct avx512vnni;
21
+
22
+ /**
23
+ * @ingroup architectures
24
+ *
25
+ * AVX512VNNI instructions
26
+ */
27
+ template <>
28
+ struct avx512vnni<avx512vbmi2> : avx512vbmi2
29
+ {
30
+ static constexpr bool supported() noexcept { return XSIMD_WITH_AVX512VNNI_AVX512VBMI2; }
31
+ static constexpr bool available() noexcept { return true; }
32
+ static constexpr char const* name() noexcept { return "avx512vnni+avx512vbmi2"; }
33
+ };
34
+
35
+ #if XSIMD_WITH_AVX512VNNI_AVX512VBMI2
36
+
37
+ #if !XSIMD_WITH_AVX512VBMI2
38
+ #error "architecture inconsistency: avx512vnni+avx512vbmi2 requires avx512vbmi2"
39
+ #endif
40
+
41
+ namespace types
42
+ {
43
+ template <class T>
44
+ struct get_bool_simd_register<T, avx512vnni<avx512vbmi2>>
45
+ {
46
+ using type = simd_avx512_bool_register<T>;
47
+ };
48
+
49
+ XSIMD_DECLARE_SIMD_REGISTER_ALIAS(avx512vnni<avx512vbmi2>, avx512vbmi2);
50
+ }
51
+ #endif
52
+ }
53
+ #endif