sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h

@@ -1,688 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2009 Keir Mierle <mierle@gmail.com>
-// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
-// Copyright (C) 2011 Timothy E. Holy <tim.holy@gmail.com >
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_LDLT_H
-#define EIGEN_LDLT_H
-
-namespace Eigen {
-
-namespace internal {
-  template<typename _MatrixType, int _UpLo> struct traits<LDLT<_MatrixType, _UpLo> >
-   : traits<_MatrixType>
-  {
-    typedef MatrixXpr XprKind;
-    typedef SolverStorage StorageKind;
-    typedef int StorageIndex;
-    enum { Flags = 0 };
-  };
-
-  template<typename MatrixType, int UpLo> struct LDLT_Traits;
-
-  // PositiveSemiDef means positive semi-definite and non-zero; same for NegativeSemiDef
-  enum SignMatrix { PositiveSemiDef, NegativeSemiDef, ZeroSign, Indefinite };
-}
-
-/** \ingroup Cholesky_Module
-  *
-  * \class LDLT
-  *
-  * \brief Robust Cholesky decomposition of a matrix with pivoting
-  *
-  * \tparam _MatrixType the type of the matrix of which to compute the LDL^T Cholesky decomposition
-  * \tparam _UpLo the triangular part that will be used for the decompositon: Lower (default) or Upper.
-  *             The other triangular part won't be read.
-  *
-  * Perform a robust Cholesky decomposition of a positive semidefinite or negative semidefinite
-  * matrix \f$ A \f$ such that \f$ A =  P^TLDL^*P \f$, where P is a permutation matrix, L
-  * is lower triangular with a unit diagonal and D is a diagonal matrix.
-  *
-  * The decomposition uses pivoting to ensure stability, so that D will have
-  * zeros in the bottom right rank(A) - n submatrix. Avoiding the square root
-  * on D also stabilizes the computation.
-  *
-  * Remember that Cholesky decompositions are not rank-revealing. Also, do not use a Cholesky
-  * decomposition to determine whether a system of equations has a solution.
-  *
-  * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
-  *
-  * \sa MatrixBase::ldlt(), SelfAdjointView::ldlt(), class LLT
-  */
-template<typename _MatrixType, int _UpLo> class LDLT
-        : public SolverBase<LDLT<_MatrixType, _UpLo> >
-{
-  public:
-    typedef _MatrixType MatrixType;
-    typedef SolverBase<LDLT> Base;
-    friend class SolverBase<LDLT>;
-
-    EIGEN_GENERIC_PUBLIC_INTERFACE(LDLT)
-    enum {
-      MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
-      MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime,
-      UpLo = _UpLo
-    };
-    typedef Matrix<Scalar, RowsAtCompileTime, 1, 0, MaxRowsAtCompileTime, 1> TmpMatrixType;
-
-    typedef Transpositions<RowsAtCompileTime, MaxRowsAtCompileTime> TranspositionType;
-    typedef PermutationMatrix<RowsAtCompileTime, MaxRowsAtCompileTime> PermutationType;
-
-    typedef internal::LDLT_Traits<MatrixType,UpLo> Traits;
-
-    /** \brief Default Constructor.
-      *
-      * The default constructor is useful in cases in which the user intends to
-      * perform decompositions via LDLT::compute(const MatrixType&).
-      */
-    LDLT()
-      : m_matrix(),
-        m_transpositions(),
-        m_sign(internal::ZeroSign),
-        m_isInitialized(false)
-    {}
-
-    /** \brief Default Constructor with memory preallocation
-      *
-      * Like the default constructor but with preallocation of the internal data
-      * according to the specified problem \a size.
-      * \sa LDLT()
-      */
-    explicit LDLT(Index size)
-      : m_matrix(size, size),
-        m_transpositions(size),
-        m_temporary(size),
-        m_sign(internal::ZeroSign),
-        m_isInitialized(false)
-    {}
-
-    /** \brief Constructor with decomposition
-      *
-      * This calculates the decomposition for the input \a matrix.
-      *
-      * \sa LDLT(Index size)
-      */
-    template<typename InputType>
-    explicit LDLT(const EigenBase<InputType>& matrix)
-      : m_matrix(matrix.rows(), matrix.cols()),
-        m_transpositions(matrix.rows()),
-        m_temporary(matrix.rows()),
-        m_sign(internal::ZeroSign),
-        m_isInitialized(false)
-    {
-      compute(matrix.derived());
-    }
-
-    /** \brief Constructs a LDLT factorization from a given matrix
-      *
-      * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
-      *
-      * \sa LDLT(const EigenBase&)
-      */
-    template<typename InputType>
-    explicit LDLT(EigenBase<InputType>& matrix)
-      : m_matrix(matrix.derived()),
-        m_transpositions(matrix.rows()),
-        m_temporary(matrix.rows()),
-        m_sign(internal::ZeroSign),
-        m_isInitialized(false)
-    {
-      compute(matrix.derived());
-    }
-
-    /** Clear any existing decomposition
-     * \sa rankUpdate(w,sigma)
-     */
-    void setZero()
-    {
-      m_isInitialized = false;
-    }
-
-    /** \returns a view of the upper triangular matrix U */
-    inline typename Traits::MatrixU matrixU() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return Traits::getU(m_matrix);
-    }
-
-    /** \returns a view of the lower triangular matrix L */
-    inline typename Traits::MatrixL matrixL() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return Traits::getL(m_matrix);
-    }
-
-    /** \returns the permutation matrix P as a transposition sequence.
-      */
-    inline const TranspositionType& transpositionsP() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return m_transpositions;
-    }
-
-    /** \returns the coefficients of the diagonal matrix D */
-    inline Diagonal<const MatrixType> vectorD() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return m_matrix.diagonal();
-    }
-
-    /** \returns true if the matrix is positive (semidefinite) */
-    inline bool isPositive() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return m_sign == internal::PositiveSemiDef || m_sign == internal::ZeroSign;
-    }
-
-    /** \returns true if the matrix is negative (semidefinite) */
-    inline bool isNegative(void) const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return m_sign == internal::NegativeSemiDef || m_sign == internal::ZeroSign;
-    }
-
-    #ifdef EIGEN_PARSED_BY_DOXYGEN
-    /** \returns a solution x of \f$ A x = b \f$ using the current decomposition of A.
-      *
-      * This function also supports in-place solves using the syntax <tt>x = decompositionObject.solve(x)</tt> .
-      *
-      * \note_about_checking_solutions
-      *
-      * More precisely, this method solves \f$ A x = b \f$ using the decomposition \f$ A = P^T L D L^* P \f$
-      * by solving the systems \f$ P^T y_1 = b \f$, \f$ L y_2 = y_1 \f$, \f$ D y_3 = y_2 \f$,
-      * \f$ L^* y_4 = y_3 \f$ and \f$ P x = y_4 \f$ in succession. If the matrix \f$ A \f$ is singular, then
-      * \f$ D \f$ will also be singular (all the other matrices are invertible). In that case, the
-      * least-square solution of \f$ D y_3 = y_2 \f$ is computed. This does not mean that this function
-      * computes the least-square solution of \f$ A x = b \f$ if \f$ A \f$ is singular.
-      *
-      * \sa MatrixBase::ldlt(), SelfAdjointView::ldlt()
-      */
-    template<typename Rhs>
-    inline const Solve<LDLT, Rhs>
-    solve(const MatrixBase<Rhs>& b) const;
-    #endif
-
-    template<typename Derived>
-    bool solveInPlace(MatrixBase<Derived> &bAndX) const;
-
-    template<typename InputType>
-    LDLT& compute(const EigenBase<InputType>& matrix);
-
-    /** \returns an estimate of the reciprocal condition number of the matrix of
-     *  which \c *this is the LDLT decomposition.
-     */
-    RealScalar rcond() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return internal::rcond_estimate_helper(m_l1_norm, *this);
-    }
-
-    template <typename Derived>
-    LDLT& rankUpdate(const MatrixBase<Derived>& w, const RealScalar& alpha=1);
-
-    /** \returns the internal LDLT decomposition matrix
-      *
-      * TODO: document the storage layout
-      */
-    inline const MatrixType& matrixLDLT() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return m_matrix;
-    }
-
-    MatrixType reconstructedMatrix() const;
-
-    /** \returns the adjoint of \c *this, that is, a const reference to the decomposition itself as the underlying matrix is self-adjoint.
-      *
-      * This method is provided for compatibility with other matrix decompositions, thus enabling generic code such as:
-      * \code x = decomposition.adjoint().solve(b) \endcode
-      */
-    const LDLT& adjoint() const { return *this; };
-
-    EIGEN_DEVICE_FUNC inline EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
-    EIGEN_DEVICE_FUNC inline EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
-
-    /** \brief Reports whether previous computation was successful.
-      *
-      * \returns \c Success if computation was successful,
-      *          \c NumericalIssue if the factorization failed because of a zero pivot.
-      */
-    ComputationInfo info() const
-    {
-      eigen_assert(m_isInitialized && "LDLT is not initialized.");
-      return m_info;
-    }
-
-    #ifndef EIGEN_PARSED_BY_DOXYGEN
-    template<typename RhsType, typename DstType>
-    void _solve_impl(const RhsType &rhs, DstType &dst) const;
-
-    template<bool Conjugate, typename RhsType, typename DstType>
-    void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
-    #endif
-
-  protected:
-
-    static void check_template_parameters()
-    {
-      EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
-    }
-
-    /** \internal
-      * Used to compute and store the Cholesky decomposition A = L D L^* = U^* D U.
-      * The strict upper part is used during the decomposition, the strict lower
-      * part correspond to the coefficients of L (its diagonal is equal to 1 and
-      * is not stored), and the diagonal entries correspond to D.
-      */
-    MatrixType m_matrix;
-    RealScalar m_l1_norm;
-    TranspositionType m_transpositions;
-    TmpMatrixType m_temporary;
-    internal::SignMatrix m_sign;
-    bool m_isInitialized;
-    ComputationInfo m_info;
-};
-
-namespace internal {
-
-template<int UpLo> struct ldlt_inplace;
-
-template<> struct ldlt_inplace<Lower>
-{
-  template<typename MatrixType, typename TranspositionType, typename Workspace>
-  static bool unblocked(MatrixType& mat, TranspositionType& transpositions, Workspace& temp, SignMatrix& sign)
-  {
-    using std::abs;
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-    typedef typename TranspositionType::StorageIndex IndexType;
-    eigen_assert(mat.rows()==mat.cols());
-    const Index size = mat.rows();
-    bool found_zero_pivot = false;
-    bool ret = true;
-
-    if (size <= 1)
-    {
-      transpositions.setIdentity();
-      if(size==0) sign = ZeroSign;
-      else if (numext::real(mat.coeff(0,0)) > static_cast<RealScalar>(0) ) sign = PositiveSemiDef;
-      else if (numext::real(mat.coeff(0,0)) < static_cast<RealScalar>(0)) sign = NegativeSemiDef;
-      else sign = ZeroSign;
-      return true;
-    }
-
-    for (Index k = 0; k < size; ++k)
-    {
-      // Find largest diagonal element
-      Index index_of_biggest_in_corner;
-      mat.diagonal().tail(size-k).cwiseAbs().maxCoeff(&index_of_biggest_in_corner);
-      index_of_biggest_in_corner += k;
-
-      transpositions.coeffRef(k) = IndexType(index_of_biggest_in_corner);
-      if(k != index_of_biggest_in_corner)
-      {
-        // apply the transposition while taking care to consider only
-        // the lower triangular part
-        Index s = size-index_of_biggest_in_corner-1; // trailing size after the biggest element
-        mat.row(k).head(k).swap(mat.row(index_of_biggest_in_corner).head(k));
-        mat.col(k).tail(s).swap(mat.col(index_of_biggest_in_corner).tail(s));
-        std::swap(mat.coeffRef(k,k),mat.coeffRef(index_of_biggest_in_corner,index_of_biggest_in_corner));
-        for(Index i=k+1;i<index_of_biggest_in_corner;++i)
-        {
-          Scalar tmp = mat.coeffRef(i,k);
-          mat.coeffRef(i,k) = numext::conj(mat.coeffRef(index_of_biggest_in_corner,i));
-          mat.coeffRef(index_of_biggest_in_corner,i) = numext::conj(tmp);
-        }
-        if(NumTraits<Scalar>::IsComplex)
-          mat.coeffRef(index_of_biggest_in_corner,k) = numext::conj(mat.coeff(index_of_biggest_in_corner,k));
-      }
-
-      // partition the matrix:
-      //       A00 |  -  |  -
-      // lu  = A10 | A11 |  -
-      //       A20 | A21 | A22
-      Index rs = size - k - 1;
-      Block<MatrixType,Dynamic,1> A21(mat,k+1,k,rs,1);
-      Block<MatrixType,1,Dynamic> A10(mat,k,0,1,k);
-      Block<MatrixType,Dynamic,Dynamic> A20(mat,k+1,0,rs,k);
-
-      if(k>0)
-      {
-        temp.head(k) = mat.diagonal().real().head(k).asDiagonal() * A10.adjoint();
-        mat.coeffRef(k,k) -= (A10 * temp.head(k)).value();
-        if(rs>0)
-          A21.noalias() -= A20 * temp.head(k);
-      }
-
-      // In some previous versions of Eigen (e.g., 3.2.1), the scaling was omitted if the pivot
-      // was smaller than the cutoff value. However, since LDLT is not rank-revealing
-      // we should only make sure that we do not introduce INF or NaN values.
-      // Remark that LAPACK also uses 0 as the cutoff value.
-      RealScalar realAkk = numext::real(mat.coeffRef(k,k));
-      bool pivot_is_valid = (abs(realAkk) > RealScalar(0));
-
-      if(k==0 && !pivot_is_valid)
-      {
-        // The entire diagonal is zero, there is nothing more to do
-        // except filling the transpositions, and checking whether the matrix is zero.
-        sign = ZeroSign;
-        for(Index j = 0; j<size; ++j)
-        {
-          transpositions.coeffRef(j) = IndexType(j);
-          ret = ret && (mat.col(j).tail(size-j-1).array()==Scalar(0)).all();
-        }
-        return ret;
-      }
-
-      if((rs>0) && pivot_is_valid)
-        A21 /= realAkk;
-      else if(rs>0)
-        ret = ret && (A21.array()==Scalar(0)).all();
-
-      if(found_zero_pivot && pivot_is_valid) ret = false; // factorization failed
-      else if(!pivot_is_valid) found_zero_pivot = true;
-
-      if (sign == PositiveSemiDef) {
-        if (realAkk < static_cast<RealScalar>(0)) sign = Indefinite;
-      } else if (sign == NegativeSemiDef) {
-        if (realAkk > static_cast<RealScalar>(0)) sign = Indefinite;
-      } else if (sign == ZeroSign) {
-        if (realAkk > static_cast<RealScalar>(0)) sign = PositiveSemiDef;
-        else if (realAkk < static_cast<RealScalar>(0)) sign = NegativeSemiDef;
-      }
-    }
-
-    return ret;
-  }
-
-  // Reference for the algorithm: Davis and Hager, "Multiple Rank
-  // Modifications of a Sparse Cholesky Factorization" (Algorithm 1)
-  // Trivial rearrangements of their computations (Timothy E. Holy)
-  // allow their algorithm to work for rank-1 updates even if the
-  // original matrix is not of full rank.
-  // Here only rank-1 updates are implemented, to reduce the
-  // requirement for intermediate storage and improve accuracy
-  template<typename MatrixType, typename WDerived>
-  static bool updateInPlace(MatrixType& mat, MatrixBase<WDerived>& w, const typename MatrixType::RealScalar& sigma=1)
-  {
-    using numext::isfinite;
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename MatrixType::RealScalar RealScalar;
-
-    const Index size = mat.rows();
-    eigen_assert(mat.cols() == size && w.size()==size);
-
-    RealScalar alpha = 1;
-
-    // Apply the update
-    for (Index j = 0; j < size; j++)
-    {
-      // Check for termination due to an original decomposition of low-rank
-      if (!(isfinite)(alpha))
-        break;
-
-      // Update the diagonal terms
-      RealScalar dj = numext::real(mat.coeff(j,j));
-      Scalar wj = w.coeff(j);
-      RealScalar swj2 = sigma*numext::abs2(wj);
-      RealScalar gamma = dj*alpha + swj2;
-
-      mat.coeffRef(j,j) += swj2/alpha;
-      alpha += swj2/dj;
-
-
-      // Update the terms of L
-      Index rs = size-j-1;
-      w.tail(rs) -= wj * mat.col(j).tail(rs);
-      if(gamma != 0)
-        mat.col(j).tail(rs) += (sigma*numext::conj(wj)/gamma)*w.tail(rs);
-    }
-    return true;
-  }
-
-  template<typename MatrixType, typename TranspositionType, typename Workspace, typename WType>
-  static bool update(MatrixType& mat, const TranspositionType& transpositions, Workspace& tmp, const WType& w, const typename MatrixType::RealScalar& sigma=1)
-  {
-    // Apply the permutation to the input w
-    tmp = transpositions * w;
-
-    return ldlt_inplace<Lower>::updateInPlace(mat,tmp,sigma);
-  }
-};
-
-template<> struct ldlt_inplace<Upper>
-{
-  template<typename MatrixType, typename TranspositionType, typename Workspace>
-  static EIGEN_STRONG_INLINE bool unblocked(MatrixType& mat, TranspositionType& transpositions, Workspace& temp, SignMatrix& sign)
-  {
-    Transpose<MatrixType> matt(mat);
-    return ldlt_inplace<Lower>::unblocked(matt, transpositions, temp, sign);
-  }
-
-  template<typename MatrixType, typename TranspositionType, typename Workspace, typename WType>
-  static EIGEN_STRONG_INLINE bool update(MatrixType& mat, TranspositionType& transpositions, Workspace& tmp, WType& w, const typename MatrixType::RealScalar& sigma=1)
-  {
-    Transpose<MatrixType> matt(mat);
-    return ldlt_inplace<Lower>::update(matt, transpositions, tmp, w.conjugate(), sigma);
-  }
-};
-
-template<typename MatrixType> struct LDLT_Traits<MatrixType,Lower>
-{
-  typedef const TriangularView<const MatrixType, UnitLower> MatrixL;
-  typedef const TriangularView<const typename MatrixType::AdjointReturnType, UnitUpper> MatrixU;
-  static inline MatrixL getL(const MatrixType& m) { return MatrixL(m); }
-  static inline MatrixU getU(const MatrixType& m) { return MatrixU(m.adjoint()); }
-};
-
-template<typename MatrixType> struct LDLT_Traits<MatrixType,Upper>
-{
-  typedef const TriangularView<const typename MatrixType::AdjointReturnType, UnitLower> MatrixL;
-  typedef const TriangularView<const MatrixType, UnitUpper> MatrixU;
-  static inline MatrixL getL(const MatrixType& m) { return MatrixL(m.adjoint()); }
-  static inline MatrixU getU(const MatrixType& m) { return MatrixU(m); }
-};
-
-} // end namespace internal
-
-/** Compute / recompute the LDLT decomposition A = L D L^* = U^* D U of \a matrix
-  */
-template<typename MatrixType, int _UpLo>
-template<typename InputType>
-LDLT<MatrixType,_UpLo>& LDLT<MatrixType,_UpLo>::compute(const EigenBase<InputType>& a)
-{
-  check_template_parameters();
-
-  eigen_assert(a.rows()==a.cols());
-  const Index size = a.rows();
-
-  m_matrix = a.derived();
-
-  // Compute matrix L1 norm = max abs column sum.
-  m_l1_norm = RealScalar(0);
-  // TODO move this code to SelfAdjointView
-  for (Index col = 0; col < size; ++col) {
-    RealScalar abs_col_sum;
-    if (_UpLo == Lower)
-      abs_col_sum = m_matrix.col(col).tail(size - col).template lpNorm<1>() + m_matrix.row(col).head(col).template lpNorm<1>();
-    else
-      abs_col_sum = m_matrix.col(col).head(col).template lpNorm<1>() + m_matrix.row(col).tail(size - col).template lpNorm<1>();
-    if (abs_col_sum > m_l1_norm)
-      m_l1_norm = abs_col_sum;
-  }
-
-  m_transpositions.resize(size);
-  m_isInitialized = false;
-  m_temporary.resize(size);
-  m_sign = internal::ZeroSign;
-
-  m_info = internal::ldlt_inplace<UpLo>::unblocked(m_matrix, m_transpositions, m_temporary, m_sign) ? Success : NumericalIssue;
-
-  m_isInitialized = true;
-  return *this;
-}
-
-/** Update the LDLT decomposition:  given A = L D L^T, efficiently compute the decomposition of A + sigma w w^T.
- * \param w a vector to be incorporated into the decomposition.
- * \param sigma a scalar, +1 for updates and -1 for "downdates," which correspond to removing previously-added column vectors. Optional; default value is +1.
- * \sa setZero()
-  */
-template<typename MatrixType, int _UpLo>
-template<typename Derived>
-LDLT<MatrixType,_UpLo>& LDLT<MatrixType,_UpLo>::rankUpdate(const MatrixBase<Derived>& w, const typename LDLT<MatrixType,_UpLo>::RealScalar& sigma)
-{
-  typedef typename TranspositionType::StorageIndex IndexType;
-  const Index size = w.rows();
-  if (m_isInitialized)
-  {
-    eigen_assert(m_matrix.rows()==size);
-  }
-  else
-  {
-    m_matrix.resize(size,size);
-    m_matrix.setZero();
-    m_transpositions.resize(size);
-    for (Index i = 0; i < size; i++)
-      m_transpositions.coeffRef(i) = IndexType(i);
-    m_temporary.resize(size);
-    m_sign = sigma>=0 ? internal::PositiveSemiDef : internal::NegativeSemiDef;
-    m_isInitialized = true;
-  }
-
-  internal::ldlt_inplace<UpLo>::update(m_matrix, m_transpositions, m_temporary, w, sigma);
-
-  return *this;
-}
-
-#ifndef EIGEN_PARSED_BY_DOXYGEN
-template<typename _MatrixType, int _UpLo>
-template<typename RhsType, typename DstType>
-void LDLT<_MatrixType,_UpLo>::_solve_impl(const RhsType &rhs, DstType &dst) const
-{
-  _solve_impl_transposed<true>(rhs, dst);
-}
-
-template<typename _MatrixType,int _UpLo>
-template<bool Conjugate, typename RhsType, typename DstType>
-void LDLT<_MatrixType,_UpLo>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
-{
-  // dst = P b
-  dst = m_transpositions * rhs;
-
-  // dst = L^-1 (P b)
-  // dst = L^-*T (P b)
-  matrixL().template conjugateIf<!Conjugate>().solveInPlace(dst);
-
-  // dst = D^-* (L^-1 P b)
-  // dst = D^-1 (L^-*T P b)
-  // more precisely, use pseudo-inverse of D (see bug 241)
-  using std::abs;
-  const typename Diagonal<const MatrixType>::RealReturnType vecD(vectorD());
-  // In some previous versions, tolerance was set to the max of 1/highest (or rather numeric_limits::min())
-  // and the maximal diagonal entry * epsilon as motivated by LAPACK's xGELSS:
-  // RealScalar tolerance = numext::maxi(vecD.array().abs().maxCoeff() * NumTraits<RealScalar>::epsilon(),RealScalar(1) / NumTraits<RealScalar>::highest());
-  // However, LDLT is not rank revealing, and so adjusting the tolerance wrt to the highest
-  // diagonal element is not well justified and leads to numerical issues in some cases.
-  // Moreover, Lapack's xSYTRS routines use 0 for the tolerance.
-  // Using numeric_limits::min() gives us more robustness to denormals.
-  RealScalar tolerance = (std::numeric_limits<RealScalar>::min)();
-  for (Index i = 0; i < vecD.size(); ++i)
-  {
-    if(abs(vecD(i)) > tolerance)
-      dst.row(i) /= vecD(i);
-    else
-      dst.row(i).setZero();
-  }
-
-  // dst = L^-* (D^-* L^-1 P b)
-  // dst = L^-T (D^-1 L^-*T P b)
-  matrixL().transpose().template conjugateIf<Conjugate>().solveInPlace(dst);
-
-  // dst = P^T (L^-* D^-* L^-1 P b) = A^-1 b
-  // dst = P^-T (L^-T D^-1 L^-*T P b) = A^-1 b
-  dst = m_transpositions.transpose() * dst;
-}
-#endif
-
-/** \internal use x = ldlt_object.solve(x);
-  *
-  * This is the \em in-place version of solve().
-  *
-  * \param bAndX represents both the right-hand side matrix b and result x.
-  *
-  * \returns true always! If you need to check for existence of solutions, use another decomposition like LU, QR, or SVD.
-  *
-  * This version avoids a copy when the right hand side matrix b is not
-  * needed anymore.
-  *
-  * \sa LDLT::solve(), MatrixBase::ldlt()
-  */
-template<typename MatrixType,int _UpLo>
-template<typename Derived>
-bool LDLT<MatrixType,_UpLo>::solveInPlace(MatrixBase<Derived> &bAndX) const
-{
-  eigen_assert(m_isInitialized && "LDLT is not initialized.");
-  eigen_assert(m_matrix.rows() == bAndX.rows());
-
-  bAndX = this->solve(bAndX);
-
-  return true;
-}
-
-/** \returns the matrix represented by the decomposition,
- * i.e., it returns the product: P^T L D L^* P.
- * This function is provided for debug purpose. */
-template<typename MatrixType, int _UpLo>
-MatrixType LDLT<MatrixType,_UpLo>::reconstructedMatrix() const
-{
-  eigen_assert(m_isInitialized && "LDLT is not initialized.");
-  const Index size = m_matrix.rows();
-  MatrixType res(size,size);
-
-  // P
-  res.setIdentity();
-  res = transpositionsP() * res;
-  // L^* P
-  res = matrixU() * res;
-  // D(L^*P)
-  res = vectorD().real().asDiagonal() * res;
-  // L(DL^*P)
-  res = matrixL() * res;
-  // P^T (LDL^*P)
-  res = transpositionsP().transpose() * res;
-
-  return res;
-}
-
-/** \cholesky_module
-  * \returns the Cholesky decomposition with full pivoting without square root of \c *this
-  * \sa MatrixBase::ldlt()
-  */
-template<typename MatrixType, unsigned int UpLo>
-inline const LDLT<typename SelfAdjointView<MatrixType, UpLo>::PlainObject, UpLo>
-SelfAdjointView<MatrixType, UpLo>::ldlt() const
-{
-  return LDLT<PlainObject,UpLo>(m_matrix);
-}
-
-/** \cholesky_module
-  * \returns the Cholesky decomposition with full pivoting without square root of \c *this
-  * \sa SelfAdjointView::ldlt()
-  */
-template<typename Derived>
-inline const LDLT<typename MatrixBase<Derived>::PlainObject>
-MatrixBase<Derived>::ldlt() const
-{
-  return LDLT<PlainObject>(derived());
-}
-
-} // end namespace Eigen
-
-#endif // EIGEN_LDLT_H