sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,79 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_SPECIALFUNCTIONS_PACKETMATH_H
11
- #define EIGEN_SPECIALFUNCTIONS_PACKETMATH_H
12
-
13
- namespace Eigen {
14
-
15
- namespace internal {
16
-
17
- /** \internal \returns the ln(|gamma(\a a)|) (coeff-wise) */
18
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
19
- Packet plgamma(const Packet& a) { using numext::lgamma; return lgamma(a); }
20
-
21
- /** \internal \returns the derivative of lgamma, psi(\a a) (coeff-wise) */
22
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
23
- Packet pdigamma(const Packet& a) { using numext::digamma; return digamma(a); }
24
-
25
- /** \internal \returns the zeta function of two arguments (coeff-wise) */
26
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
27
- Packet pzeta(const Packet& x, const Packet& q) { using numext::zeta; return zeta(x, q); }
28
-
29
- /** \internal \returns the polygamma function (coeff-wise) */
30
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
31
- Packet ppolygamma(const Packet& n, const Packet& x) { using numext::polygamma; return polygamma(n, x); }
32
-
33
- /** \internal \returns the erf(\a a) (coeff-wise) */
34
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
35
- Packet perf(const Packet& a) { using numext::erf; return erf(a); }
36
-
37
- /** \internal \returns the erfc(\a a) (coeff-wise) */
38
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
39
- Packet perfc(const Packet& a) { using numext::erfc; return erfc(a); }
40
-
41
- /** \internal \returns the ndtri(\a a) (coeff-wise) */
42
- template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
43
- Packet pndtri(const Packet& a) {
44
- typedef typename unpacket_traits<Packet>::type ScalarType;
45
- using internal::generic_ndtri; return generic_ndtri<Packet, ScalarType>(a);
46
- }
47
-
48
- /** \internal \returns the incomplete gamma function igamma(\a a, \a x) */
49
- template<typename Packet> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
50
- Packet pigamma(const Packet& a, const Packet& x) { using numext::igamma; return igamma(a, x); }
51
-
52
- /** \internal \returns the derivative of the incomplete gamma function
53
- * igamma_der_a(\a a, \a x) */
54
- template <typename Packet>
55
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet pigamma_der_a(const Packet& a, const Packet& x) {
56
- using numext::igamma_der_a; return igamma_der_a(a, x);
57
- }
58
-
59
- /** \internal \returns compute the derivative of the sample
60
- * of Gamma(alpha, 1) random variable with respect to the parameter a
61
- * gamma_sample_der_alpha(\a alpha, \a sample) */
62
- template <typename Packet>
63
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet pgamma_sample_der_alpha(const Packet& alpha, const Packet& sample) {
64
- using numext::gamma_sample_der_alpha; return gamma_sample_der_alpha(alpha, sample);
65
- }
66
-
67
- /** \internal \returns the complementary incomplete gamma function igammac(\a a, \a x) */
68
- template<typename Packet> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
69
- Packet pigammac(const Packet& a, const Packet& x) { using numext::igammac; return igammac(a, x); }
70
-
71
- /** \internal \returns the complementary incomplete gamma function betainc(\a a, \a b, \a x) */
72
- template<typename Packet> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
73
- Packet pbetainc(const Packet& a, const Packet& b,const Packet& x) { using numext::betainc; return betainc(a, b, x); }
74
-
75
- } // end namespace internal
76
-
77
- } // end namespace Eigen
78
-
79
- #endif // EIGEN_SPECIALFUNCTIONS_PACKETMATH_H
@@ -1,46 +0,0 @@
1
- #ifndef EIGEN_AVX_BESSELFUNCTIONS_H
2
- #define EIGEN_AVX_BESSELFUNCTIONS_H
3
-
4
- namespace Eigen {
5
- namespace internal {
6
-
7
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_i0)
8
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_i0)
9
-
10
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_i0e)
11
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_i0e)
12
-
13
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_i1)
14
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_i1)
15
-
16
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_i1e)
17
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_i1e)
18
-
19
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_j0)
20
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_j0)
21
-
22
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_j1)
23
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_j1)
24
-
25
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_k0)
26
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_k0)
27
-
28
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_k0e)
29
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_k0e)
30
-
31
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_k1)
32
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_k1)
33
-
34
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_k1e)
35
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_k1e)
36
-
37
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_y0)
38
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_y0)
39
-
40
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pbessel_y1)
41
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pbessel_y1)
42
-
43
- } // namespace internal
44
- } // namespace Eigen
45
-
46
- #endif // EIGEN_AVX_BESSELFUNCTIONS_H
@@ -1,16 +0,0 @@
1
- #ifndef EIGEN_AVX_SPECIALFUNCTIONS_H
2
- #define EIGEN_AVX_SPECIALFUNCTIONS_H
3
-
4
- namespace Eigen {
5
- namespace internal {
6
-
7
- F16_PACKET_FUNCTION(Packet8f, Packet8h, perf)
8
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, perf)
9
-
10
- F16_PACKET_FUNCTION(Packet8f, Packet8h, pndtri)
11
- BF16_PACKET_FUNCTION(Packet8f, Packet8bf, pndtri)
12
-
13
- } // namespace internal
14
- } // namespace Eigen
15
-
16
- #endif // EIGEN_AVX_SPECIAL_FUNCTIONS_H
@@ -1,46 +0,0 @@
1
- #ifndef EIGEN_AVX512_BESSELFUNCTIONS_H
2
- #define EIGEN_AVX512_BESSELFUNCTIONS_H
3
-
4
- namespace Eigen {
5
- namespace internal {
6
-
7
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_i0)
8
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_i0)
9
-
10
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_i0e)
11
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_i0e)
12
-
13
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_i1)
14
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_i1)
15
-
16
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_i1e)
17
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_i1e)
18
-
19
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_j0)
20
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_j0)
21
-
22
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_j1)
23
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_j1)
24
-
25
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_k0)
26
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_k0)
27
-
28
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_k0e)
29
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_k0e)
30
-
31
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_k1)
32
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_k1)
33
-
34
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_k1e)
35
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_k1e)
36
-
37
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_y0)
38
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_y0)
39
-
40
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pbessel_y1)
41
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pbessel_y1)
42
-
43
- } // namespace internal
44
- } // namespace Eigen
45
-
46
- #endif // EIGEN_AVX512_BESSELFUNCTIONS_H
@@ -1,16 +0,0 @@
1
- #ifndef EIGEN_AVX512_SPECIALFUNCTIONS_H
2
- #define EIGEN_AVX512_SPECIALFUNCTIONS_H
3
-
4
- namespace Eigen {
5
- namespace internal {
6
-
7
- F16_PACKET_FUNCTION(Packet16f, Packet16h, perf)
8
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, perf)
9
-
10
- F16_PACKET_FUNCTION(Packet16f, Packet16h, pndtri)
11
- BF16_PACKET_FUNCTION(Packet16f, Packet16bf, pndtri)
12
-
13
- } // namespace internal
14
- } // namespace Eigen
15
-
16
- #endif // EIGEN_AVX512_SPECIAL_FUNCTIONS_H
@@ -1,369 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_GPU_SPECIALFUNCTIONS_H
11
- #define EIGEN_GPU_SPECIALFUNCTIONS_H
12
-
13
- namespace Eigen {
14
-
15
- namespace internal {
16
-
17
- // Make sure this is only available when targeting a GPU: we don't want to
18
- // introduce conflicts between these packet_traits definitions and the ones
19
- // we'll use on the host side (SSE, AVX, ...)
20
- #if defined(EIGEN_GPUCC) && defined(EIGEN_USE_GPU)
21
-
22
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
23
- float4 plgamma<float4>(const float4& a)
24
- {
25
- return make_float4(lgammaf(a.x), lgammaf(a.y), lgammaf(a.z), lgammaf(a.w));
26
- }
27
-
28
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
29
- double2 plgamma<double2>(const double2& a)
30
- {
31
- using numext::lgamma;
32
- return make_double2(lgamma(a.x), lgamma(a.y));
33
- }
34
-
35
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
36
- float4 pdigamma<float4>(const float4& a)
37
- {
38
- using numext::digamma;
39
- return make_float4(digamma(a.x), digamma(a.y), digamma(a.z), digamma(a.w));
40
- }
41
-
42
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
43
- double2 pdigamma<double2>(const double2& a)
44
- {
45
- using numext::digamma;
46
- return make_double2(digamma(a.x), digamma(a.y));
47
- }
48
-
49
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
50
- float4 pzeta<float4>(const float4& x, const float4& q)
51
- {
52
- using numext::zeta;
53
- return make_float4(zeta(x.x, q.x), zeta(x.y, q.y), zeta(x.z, q.z), zeta(x.w, q.w));
54
- }
55
-
56
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
57
- double2 pzeta<double2>(const double2& x, const double2& q)
58
- {
59
- using numext::zeta;
60
- return make_double2(zeta(x.x, q.x), zeta(x.y, q.y));
61
- }
62
-
63
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
64
- float4 ppolygamma<float4>(const float4& n, const float4& x)
65
- {
66
- using numext::polygamma;
67
- return make_float4(polygamma(n.x, x.x), polygamma(n.y, x.y), polygamma(n.z, x.z), polygamma(n.w, x.w));
68
- }
69
-
70
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
71
- double2 ppolygamma<double2>(const double2& n, const double2& x)
72
- {
73
- using numext::polygamma;
74
- return make_double2(polygamma(n.x, x.x), polygamma(n.y, x.y));
75
- }
76
-
77
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
78
- float4 perf<float4>(const float4& a)
79
- {
80
- return make_float4(erff(a.x), erff(a.y), erff(a.z), erff(a.w));
81
- }
82
-
83
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
84
- double2 perf<double2>(const double2& a)
85
- {
86
- using numext::erf;
87
- return make_double2(erf(a.x), erf(a.y));
88
- }
89
-
90
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
91
- float4 perfc<float4>(const float4& a)
92
- {
93
- using numext::erfc;
94
- return make_float4(erfc(a.x), erfc(a.y), erfc(a.z), erfc(a.w));
95
- }
96
-
97
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
98
- double2 perfc<double2>(const double2& a)
99
- {
100
- using numext::erfc;
101
- return make_double2(erfc(a.x), erfc(a.y));
102
- }
103
-
104
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
105
- float4 pndtri<float4>(const float4& a)
106
- {
107
- using numext::ndtri;
108
- return make_float4(ndtri(a.x), ndtri(a.y), ndtri(a.z), ndtri(a.w));
109
- }
110
-
111
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
112
- double2 pndtri<double2>(const double2& a)
113
- {
114
- using numext::ndtri;
115
- return make_double2(ndtri(a.x), ndtri(a.y));
116
- }
117
-
118
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
119
- float4 pigamma<float4>(const float4& a, const float4& x)
120
- {
121
- using numext::igamma;
122
- return make_float4(
123
- igamma(a.x, x.x),
124
- igamma(a.y, x.y),
125
- igamma(a.z, x.z),
126
- igamma(a.w, x.w));
127
- }
128
-
129
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
130
- double2 pigamma<double2>(const double2& a, const double2& x)
131
- {
132
- using numext::igamma;
133
- return make_double2(igamma(a.x, x.x), igamma(a.y, x.y));
134
- }
135
-
136
- template <>
137
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pigamma_der_a<float4>(
138
- const float4& a, const float4& x) {
139
- using numext::igamma_der_a;
140
- return make_float4(igamma_der_a(a.x, x.x), igamma_der_a(a.y, x.y),
141
- igamma_der_a(a.z, x.z), igamma_der_a(a.w, x.w));
142
- }
143
-
144
- template <>
145
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
146
- pigamma_der_a<double2>(const double2& a, const double2& x) {
147
- using numext::igamma_der_a;
148
- return make_double2(igamma_der_a(a.x, x.x), igamma_der_a(a.y, x.y));
149
- }
150
-
151
- template <>
152
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pgamma_sample_der_alpha<float4>(
153
- const float4& alpha, const float4& sample) {
154
- using numext::gamma_sample_der_alpha;
155
- return make_float4(
156
- gamma_sample_der_alpha(alpha.x, sample.x),
157
- gamma_sample_der_alpha(alpha.y, sample.y),
158
- gamma_sample_der_alpha(alpha.z, sample.z),
159
- gamma_sample_der_alpha(alpha.w, sample.w));
160
- }
161
-
162
- template <>
163
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
164
- pgamma_sample_der_alpha<double2>(const double2& alpha, const double2& sample) {
165
- using numext::gamma_sample_der_alpha;
166
- return make_double2(
167
- gamma_sample_der_alpha(alpha.x, sample.x),
168
- gamma_sample_der_alpha(alpha.y, sample.y));
169
- }
170
-
171
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
172
- float4 pigammac<float4>(const float4& a, const float4& x)
173
- {
174
- using numext::igammac;
175
- return make_float4(
176
- igammac(a.x, x.x),
177
- igammac(a.y, x.y),
178
- igammac(a.z, x.z),
179
- igammac(a.w, x.w));
180
- }
181
-
182
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
183
- double2 pigammac<double2>(const double2& a, const double2& x)
184
- {
185
- using numext::igammac;
186
- return make_double2(igammac(a.x, x.x), igammac(a.y, x.y));
187
- }
188
-
189
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
190
- float4 pbetainc<float4>(const float4& a, const float4& b, const float4& x)
191
- {
192
- using numext::betainc;
193
- return make_float4(
194
- betainc(a.x, b.x, x.x),
195
- betainc(a.y, b.y, x.y),
196
- betainc(a.z, b.z, x.z),
197
- betainc(a.w, b.w, x.w));
198
- }
199
-
200
- template<> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
201
- double2 pbetainc<double2>(const double2& a, const double2& b, const double2& x)
202
- {
203
- using numext::betainc;
204
- return make_double2(betainc(a.x, b.x, x.x), betainc(a.y, b.y, x.y));
205
- }
206
-
207
- template <>
208
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_i0e<float4>(const float4& x) {
209
- using numext::bessel_i0e;
210
- return make_float4(bessel_i0e(x.x), bessel_i0e(x.y), bessel_i0e(x.z), bessel_i0e(x.w));
211
- }
212
-
213
- template <>
214
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
215
- pbessel_i0e<double2>(const double2& x) {
216
- using numext::bessel_i0e;
217
- return make_double2(bessel_i0e(x.x), bessel_i0e(x.y));
218
- }
219
-
220
- template <>
221
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_i0<float4>(const float4& x) {
222
- using numext::bessel_i0;
223
- return make_float4(bessel_i0(x.x), bessel_i0(x.y), bessel_i0(x.z), bessel_i0(x.w));
224
- }
225
-
226
- template <>
227
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
228
- pbessel_i0<double2>(const double2& x) {
229
- using numext::bessel_i0;
230
- return make_double2(bessel_i0(x.x), bessel_i0(x.y));
231
- }
232
-
233
- template <>
234
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_i1e<float4>(const float4& x) {
235
- using numext::bessel_i1e;
236
- return make_float4(bessel_i1e(x.x), bessel_i1e(x.y), bessel_i1e(x.z), bessel_i1e(x.w));
237
- }
238
-
239
- template <>
240
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
241
- pbessel_i1e<double2>(const double2& x) {
242
- using numext::bessel_i1e;
243
- return make_double2(bessel_i1e(x.x), bessel_i1e(x.y));
244
- }
245
-
246
- template <>
247
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_i1<float4>(const float4& x) {
248
- using numext::bessel_i1;
249
- return make_float4(bessel_i1(x.x), bessel_i1(x.y), bessel_i1(x.z), bessel_i1(x.w));
250
- }
251
-
252
- template <>
253
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
254
- pbessel_i1<double2>(const double2& x) {
255
- using numext::bessel_i1;
256
- return make_double2(bessel_i1(x.x), bessel_i1(x.y));
257
- }
258
-
259
- template <>
260
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_k0e<float4>(const float4& x) {
261
- using numext::bessel_k0e;
262
- return make_float4(bessel_k0e(x.x), bessel_k0e(x.y), bessel_k0e(x.z), bessel_k0e(x.w));
263
- }
264
-
265
- template <>
266
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
267
- pbessel_k0e<double2>(const double2& x) {
268
- using numext::bessel_k0e;
269
- return make_double2(bessel_k0e(x.x), bessel_k0e(x.y));
270
- }
271
-
272
- template <>
273
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_k0<float4>(const float4& x) {
274
- using numext::bessel_k0;
275
- return make_float4(bessel_k0(x.x), bessel_k0(x.y), bessel_k0(x.z), bessel_k0(x.w));
276
- }
277
-
278
- template <>
279
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
280
- pbessel_k0<double2>(const double2& x) {
281
- using numext::bessel_k0;
282
- return make_double2(bessel_k0(x.x), bessel_k0(x.y));
283
- }
284
-
285
- template <>
286
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_k1e<float4>(const float4& x) {
287
- using numext::bessel_k1e;
288
- return make_float4(bessel_k1e(x.x), bessel_k1e(x.y), bessel_k1e(x.z), bessel_k1e(x.w));
289
- }
290
-
291
- template <>
292
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
293
- pbessel_k1e<double2>(const double2& x) {
294
- using numext::bessel_k1e;
295
- return make_double2(bessel_k1e(x.x), bessel_k1e(x.y));
296
- }
297
-
298
- template <>
299
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_k1<float4>(const float4& x) {
300
- using numext::bessel_k1;
301
- return make_float4(bessel_k1(x.x), bessel_k1(x.y), bessel_k1(x.z), bessel_k1(x.w));
302
- }
303
-
304
- template <>
305
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
306
- pbessel_k1<double2>(const double2& x) {
307
- using numext::bessel_k1;
308
- return make_double2(bessel_k1(x.x), bessel_k1(x.y));
309
- }
310
-
311
- template <>
312
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_j0<float4>(const float4& x) {
313
- using numext::bessel_j0;
314
- return make_float4(bessel_j0(x.x), bessel_j0(x.y), bessel_j0(x.z), bessel_j0(x.w));
315
- }
316
-
317
- template <>
318
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
319
- pbessel_j0<double2>(const double2& x) {
320
- using numext::bessel_j0;
321
- return make_double2(bessel_j0(x.x), bessel_j0(x.y));
322
- }
323
-
324
- template <>
325
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_j1<float4>(const float4& x) {
326
- using numext::bessel_j1;
327
- return make_float4(bessel_j1(x.x), bessel_j1(x.y), bessel_j1(x.z), bessel_j1(x.w));
328
- }
329
-
330
- template <>
331
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
332
- pbessel_j1<double2>(const double2& x) {
333
- using numext::bessel_j1;
334
- return make_double2(bessel_j1(x.x), bessel_j1(x.y));
335
- }
336
-
337
- template <>
338
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_y0<float4>(const float4& x) {
339
- using numext::bessel_y0;
340
- return make_float4(bessel_y0(x.x), bessel_y0(x.y), bessel_y0(x.z), bessel_y0(x.w));
341
- }
342
-
343
- template <>
344
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
345
- pbessel_y0<double2>(const double2& x) {
346
- using numext::bessel_y0;
347
- return make_double2(bessel_y0(x.x), bessel_y0(x.y));
348
- }
349
-
350
- template <>
351
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE float4 pbessel_y1<float4>(const float4& x) {
352
- using numext::bessel_y1;
353
- return make_float4(bessel_y1(x.x), bessel_y1(x.y), bessel_y1(x.z), bessel_y1(x.w));
354
- }
355
-
356
- template <>
357
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE double2
358
- pbessel_y1<double2>(const double2& x) {
359
- using numext::bessel_y1;
360
- return make_double2(bessel_y1(x.x), bessel_y1(x.y));
361
- }
362
-
363
- #endif
364
-
365
- } // end namespace internal
366
-
367
- } // end namespace Eigen
368
-
369
- #endif // EIGEN_GPU_SPECIALFUNCTIONS_H
@@ -1,54 +0,0 @@
1
- #ifndef EIGEN_NEON_BESSELFUNCTIONS_H
2
- #define EIGEN_NEON_BESSELFUNCTIONS_H
3
-
4
- namespace Eigen {
5
- namespace internal {
6
-
7
- #if EIGEN_HAS_ARM64_FP16_VECTOR_ARITHMETIC
8
-
9
- #define NEON_HALF_TO_FLOAT_FUNCTIONS(METHOD) \
10
- template <> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
11
- Packet8hf METHOD<Packet8hf>(const Packet8hf& x) { \
12
- const Packet4f lo = METHOD<Packet4f>(vcvt_f32_f16(vget_low_f16(x))); \
13
- const Packet4f hi = METHOD<Packet4f>(vcvt_f32_f16(vget_high_f16(x))); \
14
- return vcombine_f16(vcvt_f16_f32(lo), vcvt_f16_f32(hi)); \
15
- } \
16
- \
17
- template <> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
18
- Packet4hf METHOD<Packet4hf>(const Packet4hf& x) { \
19
- return vcvt_f16_f32(METHOD<Packet4f>(vcvt_f32_f16(x))); \
20
- }
21
-
22
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_i0)
23
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_i0e)
24
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_i1)
25
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_i1e)
26
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_j0)
27
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_j1)
28
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_k0)
29
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_k0e)
30
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_k1)
31
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_k1e)
32
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_y0)
33
- NEON_HALF_TO_FLOAT_FUNCTIONS(pbessel_y1)
34
-
35
- #undef NEON_HALF_TO_FLOAT_FUNCTIONS
36
- #endif
37
-
38
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_i0)
39
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_i0e)
40
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_i1)
41
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_i1e)
42
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_j0)
43
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_j1)
44
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_k0)
45
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_k0e)
46
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_k1)
47
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_k1e)
48
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_y0)
49
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pbessel_y1)
50
-
51
- } // namespace internal
52
- } // namespace Eigen
53
-
54
- #endif // EIGEN_NEON_BESSELFUNCTIONS_H
@@ -1,34 +0,0 @@
1
- #ifndef EIGEN_NEON_SPECIALFUNCTIONS_H
2
- #define EIGEN_NEON_SPECIALFUNCTIONS_H
3
-
4
- namespace Eigen {
5
- namespace internal {
6
-
7
- #if EIGEN_HAS_ARM64_FP16_VECTOR_ARITHMETIC
8
-
9
- #define NEON_HALF_TO_FLOAT_FUNCTIONS(METHOD) \
10
- template <> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
11
- Packet8hf METHOD<Packet8hf>(const Packet8hf& x) { \
12
- const Packet4f lo = METHOD<Packet4f>(vcvt_f32_f16(vget_low_f16(x))); \
13
- const Packet4f hi = METHOD<Packet4f>(vcvt_f32_f16(vget_high_f16(x))); \
14
- return vcombine_f16(vcvt_f16_f32(lo), vcvt_f16_f32(hi)); \
15
- } \
16
- \
17
- template <> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
18
- Packet4hf METHOD<Packet4hf>(const Packet4hf& x) { \
19
- return vcvt_f16_f32(METHOD<Packet4f>(vcvt_f32_f16(x))); \
20
- }
21
-
22
- NEON_HALF_TO_FLOAT_FUNCTIONS(perf)
23
- NEON_HALF_TO_FLOAT_FUNCTIONS(pndtri)
24
-
25
- #undef NEON_HALF_TO_FLOAT_FUNCTIONS
26
- #endif
27
-
28
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, perf)
29
- BF16_PACKET_FUNCTION(Packet4f, Packet4bf, pndtri)
30
-
31
- } // namespace internal
32
- } // namespace Eigen
33
-
34
- #endif // EIGEN_NEON_SPECIALFUNCTIONS_H