sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,1048 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
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- // Mehdi Goli Codeplay Software Ltd.
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- // Ralph Potter Codeplay Software Ltd.
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- // Luke Iwanski Codeplay Software Ltd.
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- // Contact: <eigen@codeplay.com>
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- // Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
9
-
10
- //
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- // This Source Code Form is subject to the terms of the Mozilla
12
- // Public License v. 2.0. If a copy of the MPL was not distributed
13
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
14
-
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- #if defined(EIGEN_USE_SYCL) && !defined(EIGEN_CXX11_TENSOR_TENSOR_DEVICE_SYCL_H)
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- #define EIGEN_CXX11_TENSOR_TENSOR_DEVICE_SYCL_H
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- #include <unordered_set>
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-
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- namespace Eigen {
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-
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- namespace TensorSycl {
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- namespace internal {
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-
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- /// Cache all the device information needed
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- struct SyclDeviceInfo {
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- SyclDeviceInfo(cl::sycl::queue queue)
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- : local_mem_type(
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- queue.get_device()
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- .template get_info<cl::sycl::info::device::local_mem_type>()),
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- max_work_item_sizes(
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- queue.get_device()
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- .template get_info<
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- cl::sycl::info::device::max_work_item_sizes>()),
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- max_mem_alloc_size(
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- queue.get_device()
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- .template get_info<
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- cl::sycl::info::device::max_mem_alloc_size>()),
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- max_compute_units(queue.get_device()
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- .template get_info<
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- cl::sycl::info::device::max_compute_units>()),
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- max_work_group_size(
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- queue.get_device()
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- .template get_info<
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- cl::sycl::info::device::max_work_group_size>()),
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- local_mem_size(
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- queue.get_device()
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- .template get_info<cl::sycl::info::device::local_mem_size>()),
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- platform_name(queue.get_device()
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- .get_platform()
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- .template get_info<cl::sycl::info::platform::name>()),
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- device_name(queue.get_device()
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- .template get_info<cl::sycl::info::device::name>()),
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- device_vendor(
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- queue.get_device()
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- .template get_info<cl::sycl::info::device::vendor>()) {}
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-
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- cl::sycl::info::local_mem_type local_mem_type;
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- cl::sycl::id<3> max_work_item_sizes;
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- unsigned long max_mem_alloc_size;
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- unsigned long max_compute_units;
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- unsigned long max_work_group_size;
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- size_t local_mem_size;
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- std::string platform_name;
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- std::string device_name;
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- std::string device_vendor;
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- };
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-
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- } // end namespace internal
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- } // end namespace TensorSycl
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-
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- typedef TensorSycl::internal::buffer_data_type_t buffer_scalar_t;
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- // All devices (even AMD CPU with intel OpenCL runtime) that support OpenCL and
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- // can consume SPIR or SPIRV can use the Eigen SYCL backend and consequently
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- // TensorFlow via the Eigen SYCL Backend.
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- EIGEN_STRONG_INLINE auto get_sycl_supported_devices()
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- -> decltype(cl::sycl::device::get_devices()) {
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- #ifdef EIGEN_SYCL_USE_DEFAULT_SELECTOR
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- return {cl::sycl::device(cl::sycl::default_selector())};
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- #else
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- std::vector<cl::sycl::device> supported_devices;
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- auto platform_list = cl::sycl::platform::get_platforms();
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- for (const auto &platform : platform_list) {
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- auto device_list = platform.get_devices();
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- auto platform_name =
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- platform.template get_info<cl::sycl::info::platform::name>();
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- std::transform(platform_name.begin(), platform_name.end(),
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- platform_name.begin(), ::tolower);
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- for (const auto &device : device_list) {
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- auto vendor = device.template get_info<cl::sycl::info::device::vendor>();
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- std::transform(vendor.begin(), vendor.end(), vendor.begin(), ::tolower);
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- bool unsupported_condition =
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- (device.is_cpu() && platform_name.find("amd") != std::string::npos &&
93
- vendor.find("apu") == std::string::npos) ||
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- (platform_name.find("experimental") != std::string::npos) ||
95
- device.is_host();
96
- if (!unsupported_condition) {
97
- supported_devices.push_back(device);
98
- }
99
- }
100
- }
101
- return supported_devices;
102
- #endif
103
- }
104
-
105
- class QueueInterface {
106
- public:
107
- /// Creating device by using cl::sycl::selector or cl::sycl::device.
108
- template <typename DeviceOrSelector>
109
- explicit QueueInterface(
110
- const DeviceOrSelector &dev_or_sel, cl::sycl::async_handler handler,
111
- unsigned num_threads = std::thread::hardware_concurrency())
112
- : m_queue(dev_or_sel, handler),
113
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
114
- m_prog(m_queue.get_context(), get_sycl_supported_devices()),
115
- #endif
116
- m_thread_pool(num_threads),
117
- m_device_info(m_queue) {
118
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
119
- m_prog.build_with_kernel_type<DeviceOrSelector>();
120
- auto f = [&](cl::sycl::handler &cgh) {
121
- cgh.single_task<DeviceOrSelector>(m_prog.get_kernel<DeviceOrSelector>(),
122
- [=]() {})
123
- };
124
- EIGEN_SYCL_TRY_CATCH(m_queue.submit(f));
125
- #endif
126
- }
127
-
128
- template <typename DeviceOrSelector>
129
- explicit QueueInterface(
130
- const DeviceOrSelector &dev_or_sel,
131
- unsigned num_threads = std::thread::hardware_concurrency())
132
- : QueueInterface(dev_or_sel,
133
- [this](cl::sycl::exception_list l) {
134
- this->exception_caught_ = this->sycl_async_handler(l);
135
- },
136
- num_threads) {}
137
-
138
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
139
- EIGEN_STRONG_INLINE cl::sycl::program &program() const { return m_prog; }
140
- #endif
141
-
142
- /// Attach an existing buffer to the pointer map, Eigen will not reuse it
143
- EIGEN_STRONG_INLINE void *attach_buffer(
144
- cl::sycl::buffer<buffer_scalar_t, 1> &buf) const {
145
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
146
- return static_cast<void *>(pMapper.add_pointer(buf));
147
- }
148
-
149
- /// Detach previously attached buffer
150
- EIGEN_STRONG_INLINE void detach_buffer(void *p) const {
151
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
152
- TensorSycl::internal::SYCLfree<false>(p, pMapper);
153
- }
154
-
155
- /// Allocating device pointer. This pointer is actually an 8 bytes host
156
- /// pointer used as key to access the sycl device buffer. The reason is that
157
- /// we cannot use device buffer as a pointer as a m_data in Eigen leafNode
158
- /// expressions. So we create a key pointer to be used in Eigen expression
159
- /// construction. When we convert the Eigen construction into the sycl
160
- /// construction we use this pointer as a key in our buffer_map and we make
161
- /// sure that we dedicate only one buffer only for this pointer. The device
162
- /// pointer would be deleted by calling deallocate function.
163
- EIGEN_STRONG_INLINE void *allocate(size_t num_bytes) const {
164
- #if EIGEN_MAX_ALIGN_BYTES > 0
165
- size_t align = num_bytes % EIGEN_MAX_ALIGN_BYTES;
166
- if (align > 0) {
167
- num_bytes += EIGEN_MAX_ALIGN_BYTES - align;
168
- }
169
- #endif
170
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
171
- return TensorSycl::internal::SYCLmalloc(num_bytes, pMapper);
172
- }
173
-
174
- EIGEN_STRONG_INLINE void *allocate_temp(size_t num_bytes) const {
175
- #if EIGEN_MAX_ALIGN_BYTES > 0
176
- size_t align = num_bytes % EIGEN_MAX_ALIGN_BYTES;
177
- if (align > 0) {
178
- num_bytes += EIGEN_MAX_ALIGN_BYTES - align;
179
- }
180
- #endif
181
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
182
- #ifndef EIGEN_SYCL_NO_REUSE_BUFFERS
183
- if (scratch_buffers.empty()) {
184
- return TensorSycl::internal::SYCLmalloc(num_bytes, pMapper);
185
- ;
186
- } else {
187
- for (auto it = scratch_buffers.begin(); it != scratch_buffers.end();) {
188
- auto buff = pMapper.get_buffer(*it);
189
- if (buff.get_size() >= num_bytes) {
190
- auto ptr = *it;
191
- scratch_buffers.erase(it);
192
- return ptr;
193
- } else {
194
- ++it;
195
- }
196
- }
197
- return TensorSycl::internal::SYCLmalloc(num_bytes, pMapper);
198
- }
199
- #else
200
- return TensorSycl::internal::SYCLmalloc(num_bytes, pMapper);
201
- #endif
202
- }
203
- template <typename data_t>
204
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorSycl::internal::RangeAccess<
205
- cl::sycl::access::mode::read_write, data_t>
206
- get(data_t *data) const {
207
- return get_range_accessor<cl::sycl::access::mode::read_write, data_t>(data);
208
- }
209
- template <typename data_t>
210
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE data_t *get(
211
- TensorSycl::internal::RangeAccess<cl::sycl::access::mode::read_write,
212
- data_t>
213
- data) const {
214
- return static_cast<data_t *>(data.get_virtual_pointer());
215
- }
216
-
217
- EIGEN_STRONG_INLINE void deallocate_temp(void *p) const {
218
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
219
- #ifndef EIGEN_SYCL_NO_REUSE_BUFFERS
220
- scratch_buffers.insert(p);
221
- #else
222
- TensorSycl::internal::SYCLfree(p, pMapper);
223
- #endif
224
- }
225
- template <cl::sycl::access::mode AcMd, typename T>
226
- EIGEN_STRONG_INLINE void deallocate_temp(
227
- const TensorSycl::internal::RangeAccess<AcMd, T> &p) const {
228
- deallocate_temp(p.get_virtual_pointer());
229
- }
230
-
231
- /// This is used to deallocate the device pointer. p is used as a key inside
232
- /// the map to find the device buffer and delete it.
233
- EIGEN_STRONG_INLINE void deallocate(void *p) const {
234
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
235
- TensorSycl::internal::SYCLfree(p, pMapper);
236
- }
237
-
238
- EIGEN_STRONG_INLINE void deallocate_all() const {
239
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
240
- TensorSycl::internal::SYCLfreeAll(pMapper);
241
- #ifndef EIGEN_SYCL_NO_REUSE_BUFFERS
242
- scratch_buffers.clear();
243
- #endif
244
- }
245
-
246
- /// The memcpyHostToDevice is used to copy the data from host to device
247
- /// The destination pointer could be deleted before the copy happend which is
248
- /// why a callback function is needed. By default if none is provided, the
249
- /// function is blocking.
250
- EIGEN_STRONG_INLINE void memcpyHostToDevice(
251
- void *dst, const void *src, size_t n,
252
- std::function<void()> callback) const {
253
- static const auto write_mode = cl::sycl::access::mode::discard_write;
254
- static const auto global_access = cl::sycl::access::target::global_buffer;
255
- typedef cl::sycl::accessor<buffer_scalar_t, 1, write_mode, global_access>
256
- write_accessor;
257
- if (n == 0) {
258
- if (callback) callback();
259
- return;
260
- }
261
- n /= sizeof(buffer_scalar_t);
262
- auto f = [&](cl::sycl::handler &cgh) {
263
- write_accessor dst_acc = get_range_accessor<write_mode>(cgh, dst, n);
264
- buffer_scalar_t const *ptr = static_cast<buffer_scalar_t const *>(src);
265
- auto non_deleter = [](buffer_scalar_t const *) {};
266
- std::shared_ptr<const buffer_scalar_t> s_ptr(ptr, non_deleter);
267
- cgh.copy(s_ptr, dst_acc);
268
- };
269
- cl::sycl::event e;
270
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(f));
271
- synchronize_and_callback(e, callback);
272
- }
273
-
274
- /// The memcpyDeviceToHost is used to copy the data from device to host.
275
- /// The source pointer could be deleted before the copy happend which is
276
- /// why a callback function is needed. By default if none is provided, the
277
- /// function is blocking.
278
- EIGEN_STRONG_INLINE void memcpyDeviceToHost(
279
- void *dst, const void *src, size_t n,
280
- std::function<void()> callback) const {
281
- static const auto read_mode = cl::sycl::access::mode::read;
282
- static const auto global_access = cl::sycl::access::target::global_buffer;
283
- typedef cl::sycl::accessor<buffer_scalar_t, 1, read_mode, global_access>
284
- read_accessor;
285
- if (n == 0) {
286
- if (callback) callback();
287
- return;
288
- }
289
- n /= sizeof(buffer_scalar_t);
290
- auto f = [&](cl::sycl::handler &cgh) {
291
- read_accessor src_acc = get_range_accessor<read_mode>(cgh, src, n);
292
- buffer_scalar_t *ptr = static_cast<buffer_scalar_t *>(dst);
293
- auto non_deleter = [](buffer_scalar_t *) {};
294
- std::shared_ptr<buffer_scalar_t> s_ptr(ptr, non_deleter);
295
- cgh.copy(src_acc, s_ptr);
296
- };
297
- cl::sycl::event e;
298
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(f));
299
- synchronize_and_callback(e, callback);
300
- }
301
-
302
- /// The memcpy function.
303
- /// No callback is required here as both arguments are on the device
304
- /// and SYCL can handle the dependency.
305
- EIGEN_STRONG_INLINE void memcpy(void *dst, const void *src, size_t n) const {
306
- static const auto read_mode = cl::sycl::access::mode::read;
307
- static const auto write_mode = cl::sycl::access::mode::discard_write;
308
- if (n == 0) {
309
- return;
310
- }
311
- n /= sizeof(buffer_scalar_t);
312
- auto f = [&](cl::sycl::handler &cgh) {
313
- auto src_acc = get_range_accessor<read_mode>(cgh, src, n);
314
- auto dst_acc = get_range_accessor<write_mode>(cgh, dst, n);
315
- cgh.copy(src_acc, dst_acc);
316
- };
317
- cl::sycl::event e;
318
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(f));
319
- async_synchronize(e);
320
- }
321
-
322
- /// the memset function.
323
- /// No callback is required here as both arguments are on the device
324
- /// and SYCL can handle the dependency.
325
- EIGEN_STRONG_INLINE void memset(void *data, int c, size_t n) const {
326
- static const auto write_mode = cl::sycl::access::mode::discard_write;
327
- if (n == 0) {
328
- return;
329
- }
330
- n /= sizeof(buffer_scalar_t);
331
- auto f = [&](cl::sycl::handler &cgh) {
332
- auto dst_acc = get_range_accessor<write_mode>(cgh, data, n);
333
- // The cast to uint8_t is here to match the behaviour of the standard
334
- // memset. The cast to buffer_scalar_t is needed to match the type of the
335
- // accessor (in case buffer_scalar_t is not uint8_t)
336
- cgh.fill(dst_acc, static_cast<buffer_scalar_t>(static_cast<uint8_t>(c)));
337
- };
338
- cl::sycl::event e;
339
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(f));
340
- async_synchronize(e);
341
- }
342
-
343
- /// Get a range accessor to the virtual pointer's device memory. This range
344
- /// accessor will allow access to the memory from the pointer to the end of
345
- /// the buffer.
346
- ///
347
- /// NOTE: Inside a kernel the range accessor will always be indexed from the
348
- /// start of the buffer, so the offset in the accessor is only used by
349
- /// methods like handler::copy and will not be available inside a kernel.
350
- template <cl::sycl::access::mode AcMd, typename T>
351
- EIGEN_STRONG_INLINE TensorSycl::internal::RangeAccess<AcMd, T>
352
- get_range_accessor(const void *ptr) const {
353
- static const auto global_access = cl::sycl::access::target::global_buffer;
354
- static const auto is_place_holder = cl::sycl::access::placeholder::true_t;
355
- typedef TensorSycl::internal::RangeAccess<AcMd, T> ret_type;
356
- typedef const TensorSycl::internal::buffer_data_type_t *internal_ptr_t;
357
-
358
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
359
-
360
- auto original_buffer = pMapper.get_buffer(ptr);
361
- const ptrdiff_t offset = pMapper.get_offset(ptr);
362
- const ptrdiff_t typed_offset = offset / sizeof(T);
363
- eigen_assert(typed_offset >= 0);
364
- const auto typed_size = original_buffer.get_size() / sizeof(T);
365
- auto buffer = original_buffer.template reinterpret<
366
- typename Eigen::internal::remove_const<T>::type>(
367
- cl::sycl::range<1>(typed_size));
368
- const ptrdiff_t size = buffer.get_count() - typed_offset;
369
- eigen_assert(size >= 0);
370
- typedef cl::sycl::accessor<typename Eigen::internal::remove_const<T>::type,
371
- 1, AcMd, global_access, is_place_holder>
372
- placeholder_accessor_t;
373
- const auto start_ptr = static_cast<internal_ptr_t>(ptr) - offset;
374
- return ret_type(placeholder_accessor_t(buffer, cl::sycl::range<1>(size),
375
- cl::sycl::id<1>(typed_offset)),
376
- static_cast<size_t>(typed_offset),
377
- reinterpret_cast<std::intptr_t>(start_ptr));
378
- }
379
-
380
- /// Get a range accessor to the virtual pointer's device memory with a
381
- /// specified size.
382
- template <cl::sycl::access::mode AcMd, typename Index>
383
- EIGEN_STRONG_INLINE cl::sycl::accessor<
384
- buffer_scalar_t, 1, AcMd, cl::sycl::access::target::global_buffer>
385
- get_range_accessor(cl::sycl::handler &cgh, const void *ptr,
386
- const Index n_bytes) const {
387
- static const auto global_access = cl::sycl::access::target::global_buffer;
388
- eigen_assert(n_bytes >= 0);
389
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
390
- auto buffer = pMapper.get_buffer(ptr);
391
- const ptrdiff_t offset = pMapper.get_offset(ptr);
392
- eigen_assert(offset >= 0);
393
- eigen_assert(offset + n_bytes <= buffer.get_size());
394
- return buffer.template get_access<AcMd, global_access>(
395
- cgh, cl::sycl::range<1>(n_bytes), cl::sycl::id<1>(offset));
396
- }
397
-
398
- /// Creation of sycl accessor for a buffer. This function first tries to find
399
- /// the buffer in the buffer_map. If found it gets the accessor from it, if
400
- /// not, the function then adds an entry by creating a sycl buffer for that
401
- /// particular pointer.
402
- template <cl::sycl::access::mode AcMd>
403
- EIGEN_STRONG_INLINE cl::sycl::accessor<
404
- buffer_scalar_t, 1, AcMd, cl::sycl::access::target::global_buffer>
405
- get_sycl_accessor(cl::sycl::handler &cgh, const void *ptr) const {
406
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
407
- return pMapper.get_buffer(ptr)
408
- .template get_access<AcMd, cl::sycl::access::target::global_buffer>(
409
- cgh);
410
- }
411
-
412
- EIGEN_STRONG_INLINE cl::sycl::buffer<buffer_scalar_t, 1> get_sycl_buffer(
413
- const void *ptr) const {
414
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
415
- return pMapper.get_buffer(ptr);
416
- }
417
-
418
- EIGEN_STRONG_INLINE ptrdiff_t get_offset(const void *ptr) const {
419
- std::lock_guard<std::mutex> lock(pmapper_mutex_);
420
- return pMapper.get_offset(ptr);
421
- }
422
-
423
- template <typename OutScalar, typename sycl_kernel, typename Lhs,
424
- typename Rhs, typename OutPtr, typename Range, typename Index,
425
- typename... T>
426
- EIGEN_ALWAYS_INLINE void binary_kernel_launcher(const Lhs &lhs,
427
- const Rhs &rhs, OutPtr outptr,
428
- Range thread_range,
429
- Index scratchSize,
430
- T... var) const {
431
- auto kernel_functor = [=](cl::sycl::handler &cgh) {
432
- // binding the placeholder accessors to a commandgroup handler
433
- lhs.bind(cgh);
434
- rhs.bind(cgh);
435
- outptr.bind(cgh);
436
- typedef cl::sycl::accessor<OutScalar, 1,
437
- cl::sycl::access::mode::read_write,
438
- cl::sycl::access::target::local>
439
- LocalAccessor;
440
-
441
- LocalAccessor scratch(cl::sycl::range<1>(scratchSize), cgh);
442
- cgh.parallel_for(
443
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
444
- program().template get_kernel<sycl_kernel>(),
445
- #endif
446
- thread_range, sycl_kernel(scratch, lhs, rhs, outptr, var...));
447
- };
448
- cl::sycl::event e;
449
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(kernel_functor));
450
- async_synchronize(e);
451
- }
452
-
453
- template <typename OutScalar, typename sycl_kernel, typename InPtr,
454
- typename OutPtr, typename Range, typename Index, typename... T>
455
- EIGEN_ALWAYS_INLINE void unary_kernel_launcher(const InPtr &inptr,
456
- OutPtr &outptr,
457
- Range thread_range,
458
- Index scratchSize,
459
- T... var) const {
460
- auto kernel_functor = [=](cl::sycl::handler &cgh) {
461
- // binding the placeholder accessors to a commandgroup handler
462
- inptr.bind(cgh);
463
- outptr.bind(cgh);
464
- typedef cl::sycl::accessor<OutScalar, 1,
465
- cl::sycl::access::mode::read_write,
466
- cl::sycl::access::target::local>
467
- LocalAccessor;
468
-
469
- LocalAccessor scratch(cl::sycl::range<1>(scratchSize), cgh);
470
- cgh.parallel_for(
471
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
472
- program().template get_kernel<sycl_kernel>(),
473
- #endif
474
- thread_range, sycl_kernel(scratch, inptr, outptr, var...));
475
- };
476
- cl::sycl::event e;
477
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(kernel_functor));
478
- async_synchronize(e);
479
- }
480
-
481
- template <typename OutScalar, typename sycl_kernel, typename InPtr,
482
- typename Range, typename Index, typename... T>
483
- EIGEN_ALWAYS_INLINE void nullary_kernel_launcher(const InPtr &inptr,
484
- Range thread_range,
485
- Index scratchSize,
486
- T... var) const {
487
- auto kernel_functor = [=](cl::sycl::handler &cgh) {
488
- // binding the placeholder accessors to a commandgroup handler
489
- inptr.bind(cgh);
490
- typedef cl::sycl::accessor<OutScalar, 1,
491
- cl::sycl::access::mode::read_write,
492
- cl::sycl::access::target::local>
493
- LocalAccessor;
494
-
495
- LocalAccessor scratch(cl::sycl::range<1>(scratchSize), cgh);
496
- cgh.parallel_for(
497
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
498
- program().template get_kernel<sycl_kernel>(),
499
- #endif
500
- thread_range, sycl_kernel(scratch, inptr, var...));
501
- };
502
- cl::sycl::event e;
503
- EIGEN_SYCL_TRY_CATCH(e = m_queue.submit(kernel_functor));
504
- async_synchronize(e);
505
- }
506
-
507
-
508
- EIGEN_STRONG_INLINE void synchronize() const {
509
- #ifdef EIGEN_EXCEPTIONS
510
- m_queue.wait_and_throw();
511
- #else
512
- m_queue.wait();
513
- #endif
514
- }
515
-
516
-
517
- EIGEN_STRONG_INLINE void async_synchronize(cl::sycl::event e) const {
518
- set_latest_event(e);
519
- #ifndef EIGEN_SYCL_ASYNC_EXECUTION
520
- synchronize();
521
- #endif
522
- }
523
-
524
- template <typename Index>
525
- EIGEN_STRONG_INLINE void parallel_for_setup(Index n, Index &tileSize,
526
- Index &rng, Index &GRange) const {
527
- tileSize = static_cast<Index>(getNearestPowerOfTwoWorkGroupSize());
528
- tileSize = std::min(static_cast<Index>(EIGEN_SYCL_LOCAL_THREAD_DIM0 *
529
- EIGEN_SYCL_LOCAL_THREAD_DIM1),
530
- static_cast<Index>(tileSize));
531
- rng = n;
532
- if (rng == 0) rng = static_cast<Index>(1);
533
- GRange = rng;
534
- if (tileSize > GRange)
535
- tileSize = GRange;
536
- else if (GRange > tileSize) {
537
- Index xMode = static_cast<Index>(GRange % tileSize);
538
- if (xMode != 0) GRange += static_cast<Index>(tileSize - xMode);
539
- }
540
- }
541
-
542
- /// This is used to prepare the number of threads and also the number of
543
- /// threads per block for sycl kernels
544
- template <typename Index>
545
- EIGEN_STRONG_INLINE void parallel_for_setup(
546
- const std::array<Index, 2> &input_dim, cl::sycl::range<2> &global_range,
547
- cl::sycl::range<2> &local_range) const {
548
- std::array<Index, 2> input_range = input_dim;
549
- Index max_workgroup_Size =
550
- static_cast<Index>(getNearestPowerOfTwoWorkGroupSize());
551
- max_workgroup_Size =
552
- std::min(static_cast<Index>(EIGEN_SYCL_LOCAL_THREAD_DIM0 *
553
- EIGEN_SYCL_LOCAL_THREAD_DIM1),
554
- static_cast<Index>(max_workgroup_Size));
555
- Index pow_of_2 = static_cast<Index>(std::log2(max_workgroup_Size));
556
- local_range[1] =
557
- static_cast<Index>(std::pow(2, static_cast<Index>(pow_of_2 / 2)));
558
- input_range[1] = input_dim[1];
559
- if (input_range[1] == 0) input_range[1] = static_cast<Index>(1);
560
- global_range[1] = input_range[1];
561
- if (local_range[1] > global_range[1])
562
- local_range[1] = global_range[1];
563
- else if (global_range[1] > local_range[1]) {
564
- Index xMode = static_cast<Index>(global_range[1] % local_range[1]);
565
- if (xMode != 0)
566
- global_range[1] += static_cast<Index>(local_range[1] - xMode);
567
- }
568
- local_range[0] = static_cast<Index>(max_workgroup_Size / local_range[1]);
569
- input_range[0] = input_dim[0];
570
- if (input_range[0] == 0) input_range[0] = static_cast<Index>(1);
571
- global_range[0] = input_range[0];
572
- if (local_range[0] > global_range[0])
573
- local_range[0] = global_range[0];
574
- else if (global_range[0] > local_range[0]) {
575
- Index xMode = static_cast<Index>(global_range[0] % local_range[0]);
576
- if (xMode != 0)
577
- global_range[0] += static_cast<Index>(local_range[0] - xMode);
578
- }
579
- }
580
-
581
- /// This is used to prepare the number of threads and also the number of
582
- /// threads per block for sycl kernels
583
- template <typename Index>
584
- EIGEN_STRONG_INLINE void parallel_for_setup(
585
- const std::array<Index, 3> &input_dim, cl::sycl::range<3> &global_range,
586
- cl::sycl::range<3> &local_range) const {
587
- std::array<Index, 3> input_range = input_dim;
588
- Index max_workgroup_Size =
589
- static_cast<Index>(getNearestPowerOfTwoWorkGroupSize());
590
- max_workgroup_Size =
591
- std::min(static_cast<Index>(EIGEN_SYCL_LOCAL_THREAD_DIM0 *
592
- EIGEN_SYCL_LOCAL_THREAD_DIM1),
593
- static_cast<Index>(max_workgroup_Size));
594
- Index pow_of_2 = static_cast<Index>(std::log2(max_workgroup_Size));
595
- local_range[2] =
596
- static_cast<Index>(std::pow(2, static_cast<Index>(pow_of_2 / 3)));
597
- input_range[2] = input_dim[2];
598
- if (input_range[2] == 0) input_range[1] = static_cast<Index>(1);
599
- global_range[2] = input_range[2];
600
- if (local_range[2] > global_range[2])
601
- local_range[2] = global_range[2];
602
- else if (global_range[2] > local_range[2]) {
603
- Index xMode = static_cast<Index>(global_range[2] % local_range[2]);
604
- if (xMode != 0)
605
- global_range[2] += static_cast<Index>(local_range[2] - xMode);
606
- }
607
- pow_of_2 = static_cast<Index>(
608
- std::log2(static_cast<Index>(max_workgroup_Size / local_range[2])));
609
- local_range[1] =
610
- static_cast<Index>(std::pow(2, static_cast<Index>(pow_of_2 / 2)));
611
- input_range[1] = input_dim[1];
612
- if (input_range[1] == 0) input_range[1] = static_cast<Index>(1);
613
- global_range[1] = input_range[1];
614
- if (local_range[1] > global_range[1])
615
- local_range[1] = global_range[1];
616
- else if (global_range[1] > local_range[1]) {
617
- Index xMode = static_cast<Index>(global_range[1] % local_range[1]);
618
- if (xMode != 0)
619
- global_range[1] += static_cast<Index>(local_range[1] - xMode);
620
- }
621
- local_range[0] = static_cast<Index>(max_workgroup_Size /
622
- (local_range[1] * local_range[2]));
623
- input_range[0] = input_dim[0];
624
- if (input_range[0] == 0) input_range[0] = static_cast<Index>(1);
625
- global_range[0] = input_range[0];
626
- if (local_range[0] > global_range[0])
627
- local_range[0] = global_range[0];
628
- else if (global_range[0] > local_range[0]) {
629
- Index xMode = static_cast<Index>(global_range[0] % local_range[0]);
630
- if (xMode != 0)
631
- global_range[0] += static_cast<Index>(local_range[0] - xMode);
632
- }
633
- }
634
-
635
- EIGEN_STRONG_INLINE bool has_local_memory() const {
636
- #if !defined(EIGEN_SYCL_LOCAL_MEM) && defined(EIGEN_SYCL_NO_LOCAL_MEM)
637
- return false;
638
- #elif defined(EIGEN_SYCL_LOCAL_MEM) && !defined(EIGEN_SYCL_NO_LOCAL_MEM)
639
- return true;
640
- #else
641
- return m_device_info.local_mem_type ==
642
- cl::sycl::info::local_mem_type::local;
643
- #endif
644
- }
645
-
646
- EIGEN_STRONG_INLINE unsigned long max_buffer_size() const {
647
- return m_device_info.max_mem_alloc_size;
648
- }
649
-
650
- EIGEN_STRONG_INLINE unsigned long getNumSyclMultiProcessors() const {
651
- return m_device_info.max_compute_units;
652
- }
653
-
654
- EIGEN_STRONG_INLINE unsigned long maxSyclThreadsPerBlock() const {
655
- return m_device_info.max_work_group_size;
656
- }
657
-
658
- EIGEN_STRONG_INLINE cl::sycl::id<3> maxWorkItemSizes() const {
659
- return m_device_info.max_work_item_sizes;
660
- }
661
-
662
- /// No need for sycl it should act the same as CPU version
663
- EIGEN_STRONG_INLINE int majorDeviceVersion() const { return 1; }
664
-
665
- EIGEN_STRONG_INLINE unsigned long maxSyclThreadsPerMultiProcessor() const {
666
- // OpenCL doesnot have such concept
667
- return 2;
668
- }
669
-
670
- EIGEN_STRONG_INLINE size_t sharedMemPerBlock() const {
671
- return m_device_info.local_mem_size;
672
- }
673
-
674
- // This function returns the nearest power of 2 Work-group size which is <=
675
- // maximum device workgroup size.
676
- EIGEN_STRONG_INLINE size_t getNearestPowerOfTwoWorkGroupSize() const {
677
- return getPowerOfTwo(m_device_info.max_work_group_size, false);
678
- }
679
-
680
- EIGEN_STRONG_INLINE std::string getPlatformName() const {
681
- return m_device_info.platform_name;
682
- }
683
-
684
- EIGEN_STRONG_INLINE std::string getDeviceName() const {
685
- return m_device_info.device_name;
686
- }
687
-
688
- EIGEN_STRONG_INLINE std::string getDeviceVendor() const {
689
- return m_device_info.device_vendor;
690
- }
691
-
692
- // This function returns the nearest power of 2
693
- // if roundup is true returns result>=wgsize
694
- // else it return result <= wgsize
695
- EIGEN_STRONG_INLINE size_t getPowerOfTwo(size_t wGSize, bool roundUp) const {
696
- if (roundUp) --wGSize;
697
- wGSize |= (wGSize >> 1);
698
- wGSize |= (wGSize >> 2);
699
- wGSize |= (wGSize >> 4);
700
- wGSize |= (wGSize >> 8);
701
- wGSize |= (wGSize >> 16);
702
- #if EIGEN_ARCH_x86_64 || EIGEN_ARCH_ARM64 || EIGEN_OS_WIN64
703
- wGSize |= (wGSize >> 32);
704
- #endif
705
- return ((!roundUp) ? (wGSize - (wGSize >> 1)) : ++wGSize);
706
- }
707
-
708
- EIGEN_STRONG_INLINE cl::sycl::queue &sycl_queue() const { return m_queue; }
709
-
710
- // This function checks if the runtime recorded an error for the
711
- // underlying stream device.
712
- EIGEN_STRONG_INLINE bool ok() const {
713
- if (!exception_caught_) {
714
- synchronize();
715
- }
716
- return !exception_caught_;
717
- }
718
-
719
- EIGEN_STRONG_INLINE cl::sycl::event get_latest_event() const {
720
- #ifdef EIGEN_SYCL_STORE_LATEST_EVENT
721
- std::lock_guard<std::mutex> lock(event_mutex_);
722
- return latest_events_[std::this_thread::get_id()];
723
- #else
724
- eigen_assert(false);
725
- return cl::sycl::event();
726
- #endif
727
- }
728
-
729
- // destructor
730
- ~QueueInterface() {
731
- pMapper.clear();
732
- #ifndef EIGEN_SYCL_NO_REUSE_BUFFERS
733
- scratch_buffers.clear();
734
- #endif
735
- }
736
-
737
- protected:
738
- EIGEN_STRONG_INLINE void set_latest_event(cl::sycl::event e) const {
739
- #ifdef EIGEN_SYCL_STORE_LATEST_EVENT
740
- std::lock_guard<std::mutex> lock(event_mutex_);
741
- latest_events_[std::this_thread::get_id()] = e;
742
- #else
743
- EIGEN_UNUSED_VARIABLE(e);
744
- #endif
745
- }
746
-
747
- void synchronize_and_callback(cl::sycl::event e,
748
- const std::function<void()> &callback) const {
749
- set_latest_event(e);
750
- if (callback) {
751
- auto callback_ = [=]() {
752
- #ifdef EIGEN_EXCEPTIONS
753
- cl::sycl::event(e).wait_and_throw();
754
- #else
755
- cl::sycl::event(e).wait();
756
- #endif
757
- callback();
758
- };
759
- m_thread_pool.Schedule(std::move(callback_));
760
- } else {
761
- #ifdef EIGEN_EXCEPTIONS
762
- m_queue.wait_and_throw();
763
- #else
764
- m_queue.wait();
765
- #endif
766
- }
767
- }
768
-
769
- bool sycl_async_handler(cl::sycl::exception_list exceptions) const {
770
- bool exception_caught = false;
771
- for (const auto &e : exceptions) {
772
- if (e) {
773
- exception_caught = true;
774
- EIGEN_THROW_X(e);
775
- }
776
- }
777
- return exception_caught;
778
- }
779
-
780
- /// class members:
781
- bool exception_caught_ = false;
782
-
783
- mutable std::mutex pmapper_mutex_;
784
-
785
- #ifdef EIGEN_SYCL_STORE_LATEST_EVENT
786
- mutable std::mutex event_mutex_;
787
- mutable std::unordered_map<std::thread::id, cl::sycl::event> latest_events_;
788
- #endif
789
-
790
- /// std::map is the container used to make sure that we create only one buffer
791
- /// per pointer. The lifespan of the buffer now depends on the lifespan of
792
- /// SyclDevice. If a non-read-only pointer is needed to be accessed on the
793
- /// host we should manually deallocate it.
794
- mutable TensorSycl::internal::PointerMapper pMapper;
795
- #ifndef EIGEN_SYCL_NO_REUSE_BUFFERS
796
- mutable std::unordered_set<void *> scratch_buffers;
797
- #endif
798
- /// sycl queue
799
- mutable cl::sycl::queue m_queue;
800
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
801
- mutable cl::sycl::program m_prog;
802
- #endif
803
-
804
- /// The thread pool is used to wait on events and call callbacks
805
- /// asynchronously
806
- mutable Eigen::ThreadPool m_thread_pool;
807
-
808
- const TensorSycl::internal::SyclDeviceInfo m_device_info;
809
- };
810
-
811
- struct SyclDeviceBase {
812
- /// QueueInterface is not owned. it is the caller's responsibility to destroy
813
- /// it
814
- const QueueInterface *m_queue_stream;
815
- explicit SyclDeviceBase(const QueueInterface *queue_stream)
816
- : m_queue_stream(queue_stream) {}
817
- EIGEN_STRONG_INLINE const QueueInterface *queue_stream() const {
818
- return m_queue_stream;
819
- }
820
- };
821
-
822
- // Here is a sycl device struct which accept the sycl queue interface
823
- // as an input
824
- struct SyclDevice : public SyclDeviceBase {
825
- explicit SyclDevice(const QueueInterface *queue_stream)
826
- : SyclDeviceBase(queue_stream) {}
827
-
828
- // this is the accessor used to construct the evaluator
829
- template <cl::sycl::access::mode AcMd, typename T>
830
- EIGEN_STRONG_INLINE TensorSycl::internal::RangeAccess<AcMd, T>
831
- get_range_accessor(const void *ptr) const {
832
- return queue_stream()->template get_range_accessor<AcMd, T>(ptr);
833
- }
834
-
835
- // get sycl accessor
836
- template <cl::sycl::access::mode AcMd>
837
- EIGEN_STRONG_INLINE cl::sycl::accessor<
838
- buffer_scalar_t, 1, AcMd, cl::sycl::access::target::global_buffer>
839
- get_sycl_accessor(cl::sycl::handler &cgh, const void *ptr) const {
840
- return queue_stream()->template get_sycl_accessor<AcMd>(cgh, ptr);
841
- }
842
-
843
- /// Accessing the created sycl device buffer for the device pointer
844
- EIGEN_STRONG_INLINE cl::sycl::buffer<buffer_scalar_t, 1> get_sycl_buffer(
845
- const void *ptr) const {
846
- return queue_stream()->get_sycl_buffer(ptr);
847
- }
848
-
849
- /// This is used to prepare the number of threads and also the number of
850
- /// threads per block for sycl kernels
851
- template <typename Index>
852
- EIGEN_STRONG_INLINE void parallel_for_setup(Index n, Index &tileSize,
853
- Index &rng, Index &GRange) const {
854
- queue_stream()->parallel_for_setup(n, tileSize, rng, GRange);
855
- }
856
-
857
- /// This is used to prepare the number of threads and also the number of
858
- /// threads per block for sycl kernels
859
- template <typename Index>
860
- EIGEN_STRONG_INLINE void parallel_for_setup(
861
- const std::array<Index, 2> &input_dim, cl::sycl::range<2> &global_range,
862
- cl::sycl::range<2> &local_range) const {
863
- queue_stream()->parallel_for_setup(input_dim, global_range, local_range);
864
- }
865
-
866
- /// This is used to prepare the number of threads and also the number of
867
- /// threads per block for sycl kernels
868
- template <typename Index>
869
- EIGEN_STRONG_INLINE void parallel_for_setup(
870
- const std::array<Index, 3> &input_dim, cl::sycl::range<3> &global_range,
871
- cl::sycl::range<3> &local_range) const {
872
- queue_stream()->parallel_for_setup(input_dim, global_range, local_range);
873
- }
874
-
875
- /// allocate device memory
876
- EIGEN_STRONG_INLINE void *allocate(size_t num_bytes) const {
877
- return queue_stream()->allocate(num_bytes);
878
- }
879
-
880
- EIGEN_STRONG_INLINE void *allocate_temp(size_t num_bytes) const {
881
- return queue_stream()->allocate_temp(num_bytes);
882
- }
883
-
884
- /// deallocate device memory
885
- EIGEN_STRONG_INLINE void deallocate(void *p) const {
886
- queue_stream()->deallocate(p);
887
- }
888
-
889
- EIGEN_STRONG_INLINE void deallocate_temp(void *buffer) const {
890
- queue_stream()->deallocate_temp(buffer);
891
- }
892
- template <cl::sycl::access::mode AcMd, typename T>
893
- EIGEN_STRONG_INLINE void deallocate_temp(
894
- const TensorSycl::internal::RangeAccess<AcMd, T> &buffer) const {
895
- queue_stream()->deallocate_temp(buffer);
896
- }
897
- EIGEN_STRONG_INLINE void deallocate_all() const {
898
- queue_stream()->deallocate_all();
899
- }
900
-
901
- template <typename data_t>
902
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorSycl::internal::RangeAccess<
903
- cl::sycl::access::mode::read_write, data_t>
904
- get(data_t *data) const {
905
- return queue_stream()->get(data);
906
- }
907
- template <typename data_t>
908
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE data_t *get(
909
- TensorSycl::internal::RangeAccess<cl::sycl::access::mode::read_write,
910
- data_t>
911
- data) const {
912
- return queue_stream()->get(data);
913
- }
914
-
915
- /// attach existing buffer
916
- EIGEN_STRONG_INLINE void *attach_buffer(
917
- cl::sycl::buffer<buffer_scalar_t, 1> &buf) const {
918
- return queue_stream()->attach_buffer(buf);
919
- }
920
- /// detach buffer
921
- EIGEN_STRONG_INLINE void detach_buffer(void *p) const {
922
- queue_stream()->detach_buffer(p);
923
- }
924
- EIGEN_STRONG_INLINE ptrdiff_t get_offset(const void *ptr) const {
925
- return queue_stream()->get_offset(ptr);
926
- }
927
-
928
- // some runtime conditions that can be applied here
929
- EIGEN_STRONG_INLINE bool isDeviceSuitable() const { return true; }
930
-
931
- /// memcpyHostToDevice
932
- template <typename Index>
933
- EIGEN_STRONG_INLINE void memcpyHostToDevice(
934
- Index *dst, const Index *src, size_t n,
935
- std::function<void()> callback = {}) const {
936
- queue_stream()->memcpyHostToDevice(dst, src, n, callback);
937
- }
938
- /// memcpyDeviceToHost
939
- template <typename Index>
940
- EIGEN_STRONG_INLINE void memcpyDeviceToHost(
941
- void *dst, const Index *src, size_t n,
942
- std::function<void()> callback = {}) const {
943
- queue_stream()->memcpyDeviceToHost(dst, src, n, callback);
944
- }
945
- /// the memcpy function
946
- template <typename Index>
947
- EIGEN_STRONG_INLINE void memcpy(void *dst, const Index *src, size_t n) const {
948
- queue_stream()->memcpy(dst, src, n);
949
- }
950
- /// the memset function
951
- EIGEN_STRONG_INLINE void memset(void *data, int c, size_t n) const {
952
- queue_stream()->memset(data, c, n);
953
- }
954
- /// returning the sycl queue
955
- EIGEN_STRONG_INLINE cl::sycl::queue &sycl_queue() const {
956
- return queue_stream()->sycl_queue();
957
- }
958
- #ifdef EIGEN_SYCL_USE_PROGRAM_CLASS
959
- EIGEN_STRONG_INLINE cl::sycl::program &program() const {
960
- return queue_stream()->program();
961
- }
962
- #endif
963
-
964
- EIGEN_STRONG_INLINE size_t firstLevelCacheSize() const { return 48 * 1024; }
965
-
966
- EIGEN_STRONG_INLINE size_t lastLevelCacheSize() const {
967
- // We won't try to take advantage of the l2 cache for the time being, and
968
- // there is no l3 cache on sycl devices.
969
- return firstLevelCacheSize();
970
- }
971
- EIGEN_STRONG_INLINE unsigned long getNumSyclMultiProcessors() const {
972
- return queue_stream()->getNumSyclMultiProcessors();
973
- }
974
- EIGEN_STRONG_INLINE unsigned long maxSyclThreadsPerBlock() const {
975
- return queue_stream()->maxSyclThreadsPerBlock();
976
- }
977
- EIGEN_STRONG_INLINE cl::sycl::id<3> maxWorkItemSizes() const {
978
- return queue_stream()->maxWorkItemSizes();
979
- }
980
- EIGEN_STRONG_INLINE unsigned long maxSyclThreadsPerMultiProcessor() const {
981
- // OpenCL doesnot have such concept
982
- return queue_stream()->maxSyclThreadsPerMultiProcessor();
983
- }
984
- EIGEN_STRONG_INLINE size_t sharedMemPerBlock() const {
985
- return queue_stream()->sharedMemPerBlock();
986
- }
987
- EIGEN_STRONG_INLINE size_t getNearestPowerOfTwoWorkGroupSize() const {
988
- return queue_stream()->getNearestPowerOfTwoWorkGroupSize();
989
- }
990
-
991
- EIGEN_STRONG_INLINE size_t getPowerOfTwo(size_t val, bool roundUp) const {
992
- return queue_stream()->getPowerOfTwo(val, roundUp);
993
- }
994
- /// No need for sycl it should act the same as CPU version
995
- EIGEN_STRONG_INLINE int majorDeviceVersion() const {
996
- return queue_stream()->majorDeviceVersion();
997
- }
998
-
999
- EIGEN_STRONG_INLINE void synchronize() const {
1000
- queue_stream()->synchronize();
1001
- }
1002
- EIGEN_STRONG_INLINE void async_synchronize(
1003
- cl::sycl::event e = cl::sycl::event()) const {
1004
- queue_stream()->async_synchronize(e);
1005
- }
1006
- EIGEN_STRONG_INLINE cl::sycl::event get_latest_event() const {
1007
- return queue_stream()->get_latest_event();
1008
- }
1009
-
1010
- // This function checks if the runtime recorded an error for the
1011
- // underlying stream device.
1012
- EIGEN_STRONG_INLINE bool ok() const { return queue_stream()->ok(); }
1013
-
1014
- EIGEN_STRONG_INLINE bool has_local_memory() const {
1015
- return queue_stream()->has_local_memory();
1016
- }
1017
- EIGEN_STRONG_INLINE long max_buffer_size() const {
1018
- return queue_stream()->max_buffer_size();
1019
- }
1020
- EIGEN_STRONG_INLINE std::string getPlatformName() const {
1021
- return queue_stream()->getPlatformName();
1022
- }
1023
- EIGEN_STRONG_INLINE std::string getDeviceName() const {
1024
- return queue_stream()->getDeviceName();
1025
- }
1026
- EIGEN_STRONG_INLINE std::string getDeviceVendor() const {
1027
- return queue_stream()->getDeviceVendor();
1028
- }
1029
- template <typename OutScalar, typename KernelType, typename... T>
1030
- EIGEN_ALWAYS_INLINE void binary_kernel_launcher(T... var) const {
1031
- queue_stream()->template binary_kernel_launcher<OutScalar, KernelType>(
1032
- var...);
1033
- }
1034
- template <typename OutScalar, typename KernelType, typename... T>
1035
- EIGEN_ALWAYS_INLINE void unary_kernel_launcher(T... var) const {
1036
- queue_stream()->template unary_kernel_launcher<OutScalar, KernelType>(
1037
- var...);
1038
- }
1039
-
1040
- template <typename OutScalar, typename KernelType, typename... T>
1041
- EIGEN_ALWAYS_INLINE void nullary_kernel_launcher(T... var) const {
1042
- queue_stream()->template nullary_kernel_launcher<OutScalar, KernelType>(
1043
- var...);
1044
- }
1045
- };
1046
- } // end namespace Eigen
1047
-
1048
- #endif // EIGEN_CXX11_TENSOR_TENSOR_DEVICE_SYCL_H