sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
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  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,1023 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_H
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-
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- namespace Eigen {
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-
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- /** \class TensorContraction
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- * \ingroup CXX11_Tensor_Module
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- *
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- * \brief Tensor contraction class.
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- *
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- *
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- */
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- namespace internal {
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-
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- template<typename Dimensions, typename LhsXprType, typename RhsXprType, typename OutputKernelType>
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- struct traits<TensorContractionOp<Dimensions, LhsXprType, RhsXprType, OutputKernelType> >
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- {
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- // Type promotion to handle the case where the types of the lhs and the rhs are different.
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- typedef typename gebp_traits<typename remove_const<typename LhsXprType::Scalar>::type,
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- typename remove_const<typename RhsXprType::Scalar>::type>::ResScalar Scalar;
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-
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- typedef typename promote_storage_type<typename traits<LhsXprType>::StorageKind,
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- typename traits<RhsXprType>::StorageKind>::ret StorageKind;
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- typedef typename promote_index_type<typename traits<LhsXprType>::Index,
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- typename traits<RhsXprType>::Index>::type Index;
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- typedef typename LhsXprType::Nested LhsNested;
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- typedef typename RhsXprType::Nested RhsNested;
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- typedef typename remove_reference<LhsNested>::type _LhsNested;
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- typedef typename remove_reference<RhsNested>::type _RhsNested;
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-
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- // From NumDims below.
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- static const int NumDimensions = traits<LhsXprType>::NumDimensions + traits<RhsXprType>::NumDimensions - 2 * array_size<Dimensions>::value;
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- static const int Layout = traits<LhsXprType>::Layout;
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- typedef typename conditional<Pointer_type_promotion<typename LhsXprType::Scalar, Scalar>::val,
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- typename traits<LhsXprType>::PointerType,
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- typename traits<RhsXprType>::PointerType>::type
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- PointerType;
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-
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- enum {
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- Flags = 0
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- };
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- };
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-
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- template<typename Dimensions, typename LhsXprType, typename RhsXprType, typename OutputKernelType>
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- struct eval<TensorContractionOp<Dimensions, LhsXprType, RhsXprType, OutputKernelType>, Eigen::Dense>
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- {
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- typedef const TensorContractionOp<Dimensions, LhsXprType, RhsXprType, OutputKernelType>& type;
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- };
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-
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- template<typename Dimensions, typename LhsXprType, typename RhsXprType, typename OutputKernelType>
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- struct nested<TensorContractionOp<Dimensions, LhsXprType, RhsXprType, OutputKernelType>, 1, typename eval<TensorContractionOp<Dimensions, LhsXprType, RhsXprType, OutputKernelType> >::type>
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- {
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- typedef TensorContractionOp<Dimensions, LhsXprType, RhsXprType, OutputKernelType> type;
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- };
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-
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- template<typename Indices_, typename LeftArgType_, typename RightArgType_, typename OutputKernelType_, typename Device_>
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- struct traits<TensorEvaluator<const TensorContractionOp<Indices_, LeftArgType_, RightArgType_, OutputKernelType_>, Device_> > {
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- typedef Indices_ Indices;
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- typedef LeftArgType_ LeftArgType;
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- typedef RightArgType_ RightArgType;
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- typedef OutputKernelType_ OutputKernelType;
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- typedef Device_ Device;
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-
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- // From NumDims below.
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- static const int NumDimensions = traits<LeftArgType_>::NumDimensions + traits<RightArgType_>::NumDimensions - 2 * array_size<Indices_>::value;
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- };
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-
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- // Helper class to allocate and deallocate temporary memory for packed buffers.
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- template <typename LhsScalar, typename RhsScalar>
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- struct TensorContractionBlockMemAllocator {
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- typedef void* BlockMemHandle;
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-
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- template <typename Device>
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- EIGEN_DEVICE_FUNC static BlockMemHandle allocate(Device& d, const Index bm,
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- const Index bk,
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- const Index bn,
86
- LhsScalar** lhs_block,
87
- RhsScalar** rhs_block) {
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- eigen_assert(lhs_block);
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- eigen_assert(rhs_block);
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- BlockSizes sz = ComputeLhsRhsBlockSizes(bm, bk, bn);
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- char* block_mem = static_cast<char*>(d.allocate(sz.lhs_size + sz.rhs_size));
92
- eigen_assert(block_mem);
93
- *lhs_block = reinterpret_cast<LhsScalar*>(block_mem);
94
- *rhs_block = reinterpret_cast<RhsScalar*>(block_mem + sz.lhs_size);
95
- return block_mem;
96
- }
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-
98
- template <typename Device>
99
- EIGEN_DEVICE_FUNC static BlockMemHandle allocateSlices(
100
- Device& d, const Index bm, const Index bk, const Index bn,
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- const Index num_lhs, const Index num_rhs, const Index num_slices,
102
- std::vector<LhsScalar*>* lhs_blocks,
103
- std::vector<RhsScalar*>* rhs_blocks) {
104
- eigen_assert(num_slices > 0);
105
- eigen_assert(num_lhs >= 0 && num_rhs >= 0);
106
- eigen_assert(num_lhs == 0 || lhs_blocks);
107
- eigen_assert(num_rhs == 0 || rhs_blocks);
108
- BlockSizes sz = ComputeLhsRhsBlockSizes(bm, bk, bn);
109
- void* block_mem = d.allocate(
110
- (num_lhs * sz.lhs_size + num_rhs * sz.rhs_size) * num_slices);
111
- eigen_assert(block_mem);
112
- char* mem = static_cast<char*>(block_mem);
113
-
114
- for (Index x = 0; x < num_slices; x++) {
115
- if (num_lhs > 0) lhs_blocks[x].resize(num_lhs);
116
- for (Index m = 0; m < num_lhs; m++) {
117
- lhs_blocks[x][m] = reinterpret_cast<LhsScalar*>(mem);
118
- mem += sz.lhs_size;
119
- }
120
- if (num_rhs > 0) rhs_blocks[x].resize(num_rhs);
121
- for (Index n = 0; n < num_rhs; n++) {
122
- rhs_blocks[x][n] = reinterpret_cast<RhsScalar*>(mem);
123
- mem += sz.rhs_size;
124
- }
125
- }
126
-
127
- return block_mem;
128
- }
129
-
130
- template <typename Device>
131
- EIGEN_DEVICE_FUNC static void deallocate(Device& d, BlockMemHandle handle) {
132
- d.deallocate(handle);
133
- }
134
-
135
- private:
136
- struct BlockSizes {
137
- Index lhs_size;
138
- Index rhs_size;
139
- };
140
- EIGEN_DEVICE_FUNC static BlockSizes ComputeLhsRhsBlockSizes(const Index bm,
141
- const Index bk,
142
- const Index bn) {
143
- Index align = numext::maxi(EIGEN_MAX_ALIGN_BYTES, 1);
144
- BlockSizes sz;
145
- sz.lhs_size = divup<Index>(bm * bk * sizeof(LhsScalar), align) * align;
146
- sz.rhs_size = divup<Index>(bn * bk * sizeof(RhsScalar), align) * align;
147
- return sz;
148
- }
149
- };
150
-
151
- // WARNING: In this code we assume that Lhs and Rhs tensor expressions are in
152
- // ColMajor storage order. This property is guaranteed by the
153
- // TensorContractionOp evaluator. TensorContractionKernel specifies how we pack
154
- // blocks of Lhs and Rhs tensor expressions, and how we invoke matrix
155
- // multiplication for these blocks. Default tensor contraction uses
156
- // gemm_pack_rhs, gemm_pack_lhs and gebp_kernel from Eigen Core (see
157
- // GeneralBlocPanelKernel.h for details).
158
- //
159
- // By specializing contraction kernels we can use other low level libraries to
160
- // perform matrix multiplication, and still rely on Eigen contraction evaluator.
161
- // This also includes full support in TensorContractionThreadPool, assuming that
162
- // underlying gemm do not use it's own threading.
163
- //
164
- // - ResScalar/LhsScalar/RhsScalar - scalar type for the result of
165
- // multiplication, lhs tensor and rhs tensor respectively.
166
- //
167
- // - StorageIndex - index type for the tensor expressions. In practice almost
168
- // always is Eigen::Index.
169
- //
170
- // - OutputMapper provides access to the memory of the output matrix. In
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- // practice it's always column major blas_data_mapper (it must be of ResScalar
172
- // type).
173
- //
174
- // - LhsMapper/RhsMapper similarly to blas_data_mapper provide a two dimensional
175
- // view into the Lhs/Rhs tensor expressions. In practice it's
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- // TensorContractionInputMapper, or some specialization of it based on the
177
- // type of tensor expression (e.g. TensorImagePatchOp has optimized input
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- // mapper).
179
- template <typename ResScalar, typename LhsScalar, typename RhsScalar,
180
- typename StorageIndex, typename OutputMapper, typename LhsMapper,
181
- typename RhsMapper>
182
- struct TensorContractionKernel {
183
- // True if `invoke()` supports `beta` in `C <- alpha * A * B + beta * C`
184
- // (otherwise beta should be always equal to 1).
185
- enum { HasBeta = false };
186
-
187
- EIGEN_DEVICE_FUNC
188
- TensorContractionKernel(StorageIndex m_, StorageIndex k_, StorageIndex n_,
189
- StorageIndex bm_, StorageIndex bk_, StorageIndex bn_)
190
- : m(m_), k(k_), n(n_), bm(bm_), bk(bk_), bn(bn_) {}
191
-
192
- // Pack blocks of Lhs and Rhs into contiguous blocks in memory.
193
- typedef LhsScalar* LhsBlock;
194
- typedef RhsScalar* RhsBlock;
195
-
196
- // Packed Lhs/Rhs block memory allocator.
197
- typedef TensorContractionBlockMemAllocator<LhsScalar, RhsScalar>
198
- BlockMemAllocator;
199
- typedef typename BlockMemAllocator::BlockMemHandle BlockMemHandle;
200
-
201
- typedef typename internal::gebp_traits<LhsScalar, RhsScalar> Traits;
202
-
203
- typedef internal::gemm_pack_lhs<
204
- LhsScalar, StorageIndex, typename LhsMapper::SubMapper, Traits::mr,
205
- Traits::LhsProgress, typename Traits::LhsPacket4Packing, ColMajor>
206
- LhsPacker;
207
-
208
- typedef internal::gemm_pack_rhs<RhsScalar, StorageIndex,
209
- typename RhsMapper::SubMapper, Traits::nr,
210
- ColMajor>
211
- RhsPacker;
212
-
213
- typedef internal::gebp_kernel<LhsScalar, RhsScalar, StorageIndex,
214
- OutputMapper, Traits::mr, Traits::nr,
215
- /*ConjugateLhs*/ false, /*ConjugateRhs*/ false>
216
- GebpKernel;
217
-
218
- template <typename Device>
219
- EIGEN_DEVICE_FUNC BlockMemHandle allocate(Device& d, LhsBlock* lhs_block,
220
- RhsBlock* rhs_block) {
221
- return BlockMemAllocator::allocate(d, bm, bk, bn, lhs_block, rhs_block);
222
- }
223
-
224
- template <typename Device>
225
- EIGEN_DEVICE_FUNC BlockMemHandle allocateSlices(
226
- Device& d, const StorageIndex num_lhs, const StorageIndex num_rhs,
227
- const StorageIndex num_slices, std::vector<LhsBlock>* lhs_blocks,
228
- std::vector<RhsBlock>* rhs_blocks) {
229
- return BlockMemAllocator::allocateSlices(
230
- d, bm, bk, bn, num_lhs, num_rhs, num_slices, lhs_blocks, rhs_blocks);
231
- }
232
-
233
- template <typename Device>
234
- EIGEN_DEVICE_FUNC static void deallocate(Device& d, BlockMemHandle handle) {
235
- BlockMemAllocator::deallocate(d, handle);
236
- }
237
-
238
- EIGEN_DEVICE_FUNC EIGEN_DONT_INLINE void packLhs(
239
- LhsBlock* lhsBlock, const typename LhsMapper::SubMapper& data_mapper,
240
- const StorageIndex depth, const StorageIndex rows) {
241
- LhsPacker()(*lhsBlock, data_mapper, depth, rows, /*stride*/ 0,
242
- /*offset*/ 0);
243
- }
244
-
245
- EIGEN_DEVICE_FUNC EIGEN_DONT_INLINE void packRhs(
246
- RhsBlock* rhsBlock, const typename RhsMapper::SubMapper& data_mapper,
247
- const StorageIndex depth, const StorageIndex cols) {
248
- RhsPacker()(*rhsBlock, data_mapper, depth, cols);
249
- }
250
-
251
- EIGEN_DEVICE_FUNC EIGEN_DONT_INLINE void invoke(
252
- const OutputMapper& output_mapper, const LhsBlock& lhsBlock,
253
- const RhsBlock& rhsBlock, const StorageIndex rows,
254
- const StorageIndex depth, const StorageIndex cols,
255
- const ResScalar alpha, const ResScalar beta) {
256
- // Default GEBP kernel does not support beta.
257
- eigen_assert(beta == ResScalar(1));
258
- static const int kComputeStrideFromBlockDimensions = -1;
259
- GebpKernel()(output_mapper, lhsBlock, rhsBlock, rows, depth, cols, alpha,
260
- /*strideA*/ kComputeStrideFromBlockDimensions,
261
- /*strideB*/ kComputeStrideFromBlockDimensions,
262
- /*offsetA*/ 0, /*offsetB*/ 0);
263
- }
264
-
265
- private:
266
- // These are dimensions of the original Tensors, and selected block sizes. The
267
- // actual block sizes passed to all function above might be smaller because of
268
- // the partial blocks at the end.
269
- const StorageIndex m;
270
- const StorageIndex k;
271
- const StorageIndex n;
272
- const StorageIndex bm;
273
- const StorageIndex bk;
274
- const StorageIndex bn;
275
- };
276
-
277
- } // end namespace internal
278
-
279
- // Tensor contraction params that should enable to get from output matrix
280
- // 2-dimensional coordinates to the output tensor dimensions.
281
- struct TensorContractionParams {
282
- // TensorContraction evaluator assumes that both tensors are in ColMajor
283
- // layout, if tensors are in RowMajor evaluator swap lhs with rhs.
284
- bool swapped_arguments;
285
- };
286
-
287
- // Output kernel allows to fuse operations into the tensor contraction.
288
- //
289
- // Examples:
290
- // 1. Elementwise Relu transformation following Conv2D.
291
- // 2. AddBias to the Conv2D output channels dimension.
292
- //
293
- // The NoOpOutputKernel implements an output kernel that does absolutely nothing.
294
- struct NoOpOutputKernel {
295
- /**
296
- * Tensor contraction evaluator calls this kernel after finishing each block
297
- * of output matrix. Output blocks belong to the 2-dimensional output tensor.
298
- *
299
- * TensorContractionParams contains contraction dimensions information
300
- * required to map output 2-d space into the expected output tensor space
301
- * (potentially higher dimensional).
302
- *
303
- * \param[in] output_mapper Access to output tensor memory
304
- * \param[in] params Tensor contraction parameters
305
- * \param[in] i Index of a first row available through output_mapper
306
- * \param[in] j Index of a first column available through output_mapper
307
- * \param[in] num_rows Number of available rows
308
- * \param[in] num_cols Number of available columns
309
- */
310
- template <typename Index, typename Scalar>
311
- EIGEN_ALWAYS_INLINE void operator()(
312
- const internal::blas_data_mapper<Scalar, Index, ColMajor>& output_mapper,
313
- const TensorContractionParams& params, Index i,
314
- Index j, Index num_rows, Index num_cols) const {
315
- EIGEN_UNUSED_VARIABLE(output_mapper);
316
- EIGEN_UNUSED_VARIABLE(params);
317
- EIGEN_UNUSED_VARIABLE(i);
318
- EIGEN_UNUSED_VARIABLE(j);
319
- EIGEN_UNUSED_VARIABLE(num_rows);
320
- EIGEN_UNUSED_VARIABLE(num_cols);
321
- }
322
- };
323
-
324
- template<typename Indices, typename LhsXprType, typename RhsXprType, typename OutputKernelType = const NoOpOutputKernel>
325
- class TensorContractionOp : public TensorBase<TensorContractionOp<Indices, LhsXprType, RhsXprType, OutputKernelType>, ReadOnlyAccessors>
326
- {
327
- public:
328
- typedef typename Eigen::internal::traits<TensorContractionOp>::Scalar Scalar;
329
- typedef typename internal::gebp_traits<typename LhsXprType::CoeffReturnType,
330
- typename RhsXprType::CoeffReturnType>::ResScalar CoeffReturnType;
331
- typedef typename Eigen::internal::nested<TensorContractionOp>::type Nested;
332
- typedef typename Eigen::internal::traits<TensorContractionOp>::StorageKind StorageKind;
333
- typedef typename Eigen::internal::traits<TensorContractionOp>::Index Index;
334
-
335
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorContractionOp(
336
- const LhsXprType& lhs, const RhsXprType& rhs, const Indices& dims,
337
- const OutputKernelType& output_kernel = OutputKernelType())
338
- : m_lhs_xpr(lhs), m_rhs_xpr(rhs), m_indices(dims),
339
- m_output_kernel(output_kernel) {}
340
-
341
- EIGEN_DEVICE_FUNC
342
- const Indices& indices() const { return m_indices; }
343
-
344
- /** \returns the nested expressions */
345
- EIGEN_DEVICE_FUNC
346
- const typename internal::remove_all<typename LhsXprType::Nested>::type&
347
- lhsExpression() const { return m_lhs_xpr; }
348
-
349
- EIGEN_DEVICE_FUNC
350
- const typename internal::remove_all<typename RhsXprType::Nested>::type&
351
- rhsExpression() const { return m_rhs_xpr; }
352
-
353
- EIGEN_DEVICE_FUNC
354
- const OutputKernelType& outputKernel() const { return m_output_kernel; }
355
-
356
- protected:
357
- typename LhsXprType::Nested m_lhs_xpr;
358
- typename RhsXprType::Nested m_rhs_xpr;
359
- const Indices m_indices;
360
- const OutputKernelType m_output_kernel;
361
- };
362
-
363
-
364
- template<typename Derived>
365
- struct TensorContractionEvaluatorBase : internal::no_assignment_operator
366
- {
367
- typedef typename internal::traits<Derived>::Indices Indices;
368
- typedef typename internal::traits<Derived>::LeftArgType LeftArgType;
369
- typedef typename internal::traits<Derived>::RightArgType RightArgType;
370
- typedef typename internal::traits<Derived>::OutputKernelType OutputKernelType;
371
- typedef typename internal::traits<Derived>::Device Device;
372
-
373
- typedef TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType> XprType;
374
- typedef typename internal::remove_const<typename XprType::Scalar>::type Scalar;
375
- typedef typename XprType::Index Index;
376
- typedef typename XprType::CoeffReturnType CoeffReturnType;
377
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
378
- typedef StorageMemory<Scalar, Device> Storage;
379
- typedef typename Storage::Type EvaluatorPointerType;
380
-
381
- enum {
382
- IsAligned = true,
383
- PacketAccess = (PacketType<CoeffReturnType, Device>::size > 1),
384
- BlockAccess = false,
385
- PreferBlockAccess = false,
386
- Layout = TensorEvaluator<LeftArgType, Device>::Layout,
387
- CoordAccess = false, // to be implemented
388
- RawAccess = true
389
- };
390
-
391
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
392
- typedef internal::TensorBlockNotImplemented TensorBlock;
393
- //===--------------------------------------------------------------------===//
394
-
395
- // Most of the code is assuming that both input tensors are ColMajor. If the
396
- // inputs are RowMajor, we will "cheat" by swapping the LHS and RHS:
397
- // If we want to compute A * B = C, where A is LHS and B is RHS, the code
398
- // will pretend B is LHS and A is RHS.
399
- typedef typename internal::conditional<
400
- static_cast<int>(Layout) == static_cast<int>(ColMajor), LeftArgType, RightArgType>::type EvalLeftArgType;
401
- typedef typename internal::conditional<
402
- static_cast<int>(Layout) == static_cast<int>(ColMajor), RightArgType, LeftArgType>::type EvalRightArgType;
403
-
404
- typedef TensorEvaluator<EvalLeftArgType, Device> LeftEvaluatorType;
405
- typedef TensorEvaluator<EvalRightArgType, Device> RightEvaluatorType;
406
-
407
- static const int LDims =
408
- internal::array_size<typename TensorEvaluator<EvalLeftArgType, Device>::Dimensions>::value;
409
- static const int RDims =
410
- internal::array_size<typename TensorEvaluator<EvalRightArgType, Device>::Dimensions>::value;
411
- static const int ContractDims = internal::array_size<Indices>::value;
412
- static const int NumDims = LDims + RDims - 2 * ContractDims;
413
-
414
- typedef array<Index, ContractDims> contract_t;
415
- typedef array<Index, LDims - ContractDims> left_nocontract_t;
416
- typedef array<Index, RDims - ContractDims> right_nocontract_t;
417
-
418
- typedef DSizes<Index, NumDims> Dimensions;
419
-
420
- EIGEN_STRONG_INLINE
421
- TensorContractionEvaluatorBase(const XprType& op, const Device& device)
422
- : m_leftImpl(choose(Cond<static_cast<int>(Layout) == static_cast<int>(ColMajor)>(),
423
- op.lhsExpression(), op.rhsExpression()), device),
424
- m_rightImpl(choose(Cond<static_cast<int>(Layout) == static_cast<int>(ColMajor)>(),
425
- op.rhsExpression(), op.lhsExpression()), device),
426
- m_device(device),
427
- m_output_kernel(op.outputKernel()),
428
- m_result(NULL) {
429
- EIGEN_STATIC_ASSERT((static_cast<int>(TensorEvaluator<LeftArgType, Device>::Layout) ==
430
- static_cast<int>(TensorEvaluator<RightArgType, Device>::Layout)),
431
- YOU_MADE_A_PROGRAMMING_MISTAKE);
432
-
433
-
434
- DSizes<Index, LDims> eval_left_dims;
435
- DSizes<Index, RDims> eval_right_dims;
436
- array<IndexPair<Index>, ContractDims> eval_op_indices;
437
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
438
- // For ColMajor, we keep using the existing dimensions
439
- for (int i = 0; i < LDims; i++) {
440
- eval_left_dims[i] = m_leftImpl.dimensions()[i];
441
- }
442
- for (int i = 0; i < RDims; i++) {
443
- eval_right_dims[i] = m_rightImpl.dimensions()[i];
444
- }
445
- // We keep the pairs of contracting indices.
446
- for (int i = 0; i < ContractDims; i++) {
447
- eval_op_indices[i].first = op.indices()[i].first;
448
- eval_op_indices[i].second = op.indices()[i].second;
449
- }
450
- } else {
451
- // For RowMajor, we need to reverse the existing dimensions
452
- for (int i = 0; i < LDims; i++) {
453
- eval_left_dims[i] = m_leftImpl.dimensions()[LDims - i - 1];
454
- }
455
- for (int i = 0; i < RDims; i++) {
456
- eval_right_dims[i] = m_rightImpl.dimensions()[RDims - i - 1];
457
- }
458
- // We need to flip all the pairs of contracting indices as well as
459
- // reversing the dimensions.
460
- for (int i = 0; i < ContractDims; i++) {
461
- eval_op_indices[i].first = LDims - 1 - op.indices()[ContractDims - 1 - i].second;
462
- eval_op_indices[i].second = RDims - 1 - op.indices()[ContractDims - 1 - i].first;
463
- }
464
- }
465
-
466
- // Check for duplicate axes and make sure the first index in eval_op_indices
467
- // is increasing. Using O(n^2) sorting is OK since ContractDims is small
468
- for (int i = 0; i < ContractDims; i++) {
469
- for (int j = i + 1; j < ContractDims; j++) {
470
- eigen_assert(eval_op_indices[j].first != eval_op_indices[i].first &&
471
- eval_op_indices[j].second != eval_op_indices[i].second &&
472
- "contraction axes should be unique");
473
- if (eval_op_indices[j].first < eval_op_indices[i].first) {
474
- numext::swap(eval_op_indices[j], eval_op_indices[i]);
475
- }
476
- }
477
- }
478
-
479
- array<Index, LDims> lhs_strides;
480
- lhs_strides[0] = 1;
481
- for (int i = 0; i < LDims-1; ++i) {
482
- lhs_strides[i+1] = lhs_strides[i] * eval_left_dims[i];
483
- }
484
-
485
- array<Index, RDims> rhs_strides;
486
- rhs_strides[0] = 1;
487
- for (int i = 0; i < RDims-1; ++i) {
488
- rhs_strides[i+1] = rhs_strides[i] * eval_right_dims[i];
489
- }
490
-
491
- if (m_i_strides.size() > 0) m_i_strides[0] = 1;
492
- if (m_j_strides.size() > 0) m_j_strides[0] = 1;
493
- if (m_k_strides.size() > 0) m_k_strides[0] = 1;
494
-
495
- m_i_size = 1;
496
- m_j_size = 1;
497
- m_k_size = 1;
498
-
499
- // To compute the dimension, we simply concatenate the non-contracting
500
- // dimensions of the left and then the right tensor. Additionally, we also
501
- // compute the strides corresponding to the left non-contracting
502
- // dimensions and right non-contracting dimensions.
503
- m_lhs_inner_dim_contiguous = true;
504
- int dim_idx = 0;
505
- Index nocontract_idx = 0;
506
-
507
- for (int i = 0; i < LDims; i++) {
508
- // find if we are contracting on index i of left tensor
509
- bool contracting = false;
510
- for (int j = 0; j < ContractDims; j++) {
511
- if (eval_op_indices[j].first == i) {
512
- contracting = true;
513
- break;
514
- }
515
- }
516
- if (!contracting) {
517
- // add dimension size to output dimensions
518
- m_dimensions[dim_idx] = eval_left_dims[i];
519
- m_left_nocontract_strides[nocontract_idx] = lhs_strides[i];
520
- if (dim_idx != i) {
521
- m_lhs_inner_dim_contiguous = false;
522
- }
523
- if (nocontract_idx+1 < internal::array_size<left_nocontract_t>::value) {
524
- m_i_strides[nocontract_idx+1] =
525
- m_i_strides[nocontract_idx] * eval_left_dims[i];
526
- } else {
527
- m_i_size = m_i_strides[nocontract_idx] * eval_left_dims[i];
528
- }
529
- dim_idx++;
530
- nocontract_idx++;
531
- }
532
- }
533
-
534
- nocontract_idx = 0;
535
- for (int i = 0; i < RDims; i++) {
536
- bool contracting = false;
537
- // find if we are contracting on index i of right tensor
538
- for (int j = 0; j < ContractDims; j++) {
539
- if (eval_op_indices[j].second == i) {
540
- contracting = true;
541
- break;
542
- }
543
- }
544
- if (!contracting) {
545
- m_dimensions[dim_idx] = eval_right_dims[i];
546
- if (nocontract_idx+1 < internal::array_size<right_nocontract_t>::value) {
547
- m_j_strides[nocontract_idx+1] =
548
- m_j_strides[nocontract_idx] * eval_right_dims[i];
549
- } else {
550
- m_j_size = m_j_strides[nocontract_idx] * eval_right_dims[i];
551
- }
552
- m_right_nocontract_strides[nocontract_idx] = rhs_strides[i];
553
- dim_idx++;
554
- nocontract_idx++;
555
- }
556
- }
557
-
558
- // Now compute the strides corresponding to the contracting dimensions. We
559
- // assumed above that non-contracting axes are represented in the same order
560
- // in the matrix as they are in the tensor. This is not the case for
561
- // contracting axes. As the contracting axes must be of the same size in
562
- // each tensor, we'll only look at the first tensor here.
563
- m_rhs_inner_dim_contiguous = true;
564
- m_rhs_inner_dim_reordered = false;
565
- for (int i = 0; i < ContractDims; i++) {
566
- Index left = eval_op_indices[i].first;
567
- Index right = eval_op_indices[i].second;
568
-
569
- Index size = eval_left_dims[left];
570
- eigen_assert(size == eval_right_dims[right] &&
571
- "Contraction axes must be same size");
572
-
573
- if (i+1 < static_cast<int>(internal::array_size<contract_t>::value)) {
574
- m_k_strides[i+1] = m_k_strides[i] * size;
575
- } else {
576
- m_k_size = m_k_strides[i] * size;
577
- }
578
- m_left_contracting_strides[i] = lhs_strides[left];
579
- m_right_contracting_strides[i] = rhs_strides[right];
580
-
581
- if (i > 0 && right < eval_op_indices[i-1].second) {
582
- m_rhs_inner_dim_reordered = true;
583
- }
584
- if (right != i) {
585
- m_rhs_inner_dim_contiguous = false;
586
- }
587
- }
588
-
589
- // If the layout is RowMajor, we need to reverse the m_dimensions
590
- if (static_cast<int>(Layout) == static_cast<int>(RowMajor)) {
591
- for (int i = 0, j = NumDims - 1; i < j; i++, j--) {
592
- numext::swap(m_dimensions[i], m_dimensions[j]);
593
- }
594
- }
595
-
596
- // A set of parameters that will allow output kernel to get from output
597
- // tensor dimensions (i, j) into the original tensor dimensions.
598
- // TODO(ezhulenev): Add parameters required to infer output tensor index for
599
- // more complex contractions than 2x2 on internal dimension.
600
- m_tensor_contraction_params.swapped_arguments = static_cast<int>(Layout) == RowMajor;
601
- }
602
-
603
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
604
-
605
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
606
- m_leftImpl.evalSubExprsIfNeeded(NULL);
607
- m_rightImpl.evalSubExprsIfNeeded(NULL);
608
- if (data) {
609
- evalTo(data);
610
- return false;
611
- } else {
612
- m_result = static_cast<EvaluatorPointerType>(m_device.allocate(dimensions().TotalSize() * sizeof(Scalar)));
613
- evalTo(m_result);
614
- return true;
615
- }
616
- }
617
-
618
- #ifdef EIGEN_USE_THREADS
619
- template <typename EvalSubExprsCallback>
620
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
621
- EvaluatorPointerType dest, EvalSubExprsCallback done) {
622
- m_leftImpl.evalSubExprsIfNeededAsync(nullptr, [this, done, dest](bool) {
623
- m_rightImpl.evalSubExprsIfNeededAsync(nullptr, [this, done, dest](bool) {
624
- if (dest) {
625
- evalToAsync(dest, [done]() { done(false); });
626
- } else {
627
- m_result = static_cast<EvaluatorPointerType>(
628
- m_device.allocate(dimensions().TotalSize() * sizeof(Scalar)));
629
- evalToAsync(m_result, [done]() { done(true); });
630
- }
631
- });
632
- });
633
- }
634
- #endif // EIGEN_USE_THREADS
635
-
636
- #ifndef TENSOR_CONTRACTION_DISPATCH
637
- #define TENSOR_CONTRACTION_DISPATCH(METHOD, ALIGNMENT, ARGS) \
638
- if (this->m_lhs_inner_dim_contiguous) { \
639
- if (this->m_rhs_inner_dim_contiguous) { \
640
- if (this->m_rhs_inner_dim_reordered) { \
641
- METHOD<true, true, true, ALIGNMENT> ARGS; \
642
- } else { \
643
- METHOD<true, true, false, ALIGNMENT> ARGS; \
644
- } \
645
- } else { \
646
- if (this->m_rhs_inner_dim_reordered) { \
647
- METHOD<true, false, true, ALIGNMENT> ARGS; \
648
- } else { \
649
- METHOD<true, false, false, ALIGNMENT> ARGS; \
650
- } \
651
- } \
652
- } else { \
653
- if (this->m_rhs_inner_dim_contiguous) { \
654
- if (this->m_rhs_inner_dim_reordered) { \
655
- METHOD<false, true, true, ALIGNMENT> ARGS; \
656
- } else { \
657
- METHOD<false, true, false, ALIGNMENT> ARGS; \
658
- } \
659
- } else { \
660
- if (this->m_rhs_inner_dim_reordered) { \
661
- METHOD<false, false, true, ALIGNMENT> ARGS; \
662
- } else { \
663
- METHOD<false, false, false, ALIGNMENT> ARGS; \
664
- } \
665
- } \
666
- }
667
- #endif
668
-
669
- #ifndef TENSOR_CONTRACTION_ASYNC_DISPATCH
670
- #define TENSOR_CONTRACTION_ASYNC_DISPATCH(METHOD, DONE, ALIGNMENT, ARGS, FN) \
671
- if (this->m_lhs_inner_dim_contiguous) { \
672
- if (this->m_rhs_inner_dim_contiguous) { \
673
- if (this->m_rhs_inner_dim_reordered) { \
674
- (new METHOD<DONE, true, true, true, ALIGNMENT> ARGS)->FN; \
675
- } else { \
676
- (new METHOD<DONE, true, true, false, ALIGNMENT> ARGS)->FN; \
677
- } \
678
- } else { \
679
- if (this->m_rhs_inner_dim_reordered) { \
680
- (new METHOD<DONE, true, false, true, ALIGNMENT> ARGS)->FN; \
681
- } else { \
682
- (new METHOD<DONE, true, false, false, ALIGNMENT> ARGS)->FN; \
683
- } \
684
- } \
685
- } else { \
686
- if (this->m_rhs_inner_dim_contiguous) { \
687
- if (this->m_rhs_inner_dim_reordered) { \
688
- (new METHOD<DONE, false, true, true, ALIGNMENT> ARGS)->FN; \
689
- } else { \
690
- (new METHOD<DONE, false, true, false, ALIGNMENT> ARGS)->FN; \
691
- } \
692
- } else { \
693
- if (this->m_rhs_inner_dim_reordered) { \
694
- (new METHOD<DONE, false, false, true, ALIGNMENT> ARGS)->FN; \
695
- } else { \
696
- (new METHOD<DONE, false, false, false, ALIGNMENT> ARGS)->FN; \
697
- } \
698
- } \
699
- }
700
- #endif
701
-
702
- EIGEN_DEVICE_FUNC void evalTo(Scalar* buffer) const {
703
- static_cast<const Derived*>(this)->template evalProduct<Unaligned>(buffer);
704
- }
705
-
706
- #ifdef EIGEN_USE_THREADS
707
- template <typename EvalToCallback>
708
- void evalToAsync(Scalar* buffer, EvalToCallback done) const {
709
- static_cast<const Derived*>(this)
710
- ->template evalProductAsync<EvalToCallback, Unaligned>(buffer,
711
- std::move(done));
712
- }
713
- #endif // EIGEN_USE_THREADS
714
-
715
- template <bool lhs_inner_dim_contiguous, bool rhs_inner_dim_contiguous,
716
- bool rhs_inner_dim_reordered, int Alignment>
717
- void evalProductSequential(Scalar* buffer) const {
718
- if (this->m_j_size == 1) {
719
- this->template evalGemv<lhs_inner_dim_contiguous,
720
- rhs_inner_dim_contiguous, rhs_inner_dim_reordered,
721
- Alignment>(buffer);
722
- } else {
723
- this->template evalGemm<lhs_inner_dim_contiguous, rhs_inner_dim_contiguous,
724
- rhs_inner_dim_reordered, Alignment>(buffer);
725
- }
726
- }
727
-
728
- template <bool lhs_inner_dim_contiguous, bool rhs_inner_dim_contiguous, bool rhs_inner_dim_reordered, int Alignment>
729
- #if !defined(EIGEN_HIPCC)
730
- EIGEN_DEVICE_FUNC
731
- #endif
732
- void evalGemv(Scalar* buffer) const {
733
- const Index rows = m_i_size;
734
- const Index cols = m_k_size;
735
-
736
- typedef typename internal::remove_const<typename EvalLeftArgType::Scalar>::type LhsScalar;
737
- typedef typename internal::remove_const<typename EvalRightArgType::Scalar>::type RhsScalar;
738
- typedef TensorEvaluator<EvalLeftArgType, Device> LeftEvaluator;
739
- typedef TensorEvaluator<EvalRightArgType, Device> RightEvaluator;
740
- const Index lhs_packet_size = internal::unpacket_traits<typename LeftEvaluator::PacketReturnType>::size;
741
- const Index rhs_packet_size = internal::unpacket_traits<typename RightEvaluator::PacketReturnType>::size;
742
- const int lhs_alignment = LeftEvaluator::IsAligned ? Aligned : Unaligned;
743
- const int rhs_alignment = RightEvaluator::IsAligned ? Aligned : Unaligned;
744
- typedef internal::TensorContractionInputMapper<LhsScalar, Index, internal::Lhs,
745
- LeftEvaluator, left_nocontract_t,
746
- contract_t, lhs_packet_size,
747
- lhs_inner_dim_contiguous,
748
- false, lhs_alignment> LhsMapper;
749
-
750
- typedef internal::TensorContractionInputMapper<RhsScalar, Index, internal::Rhs,
751
- RightEvaluator, right_nocontract_t,
752
- contract_t, rhs_packet_size,
753
- rhs_inner_dim_contiguous,
754
- rhs_inner_dim_reordered, rhs_alignment> RhsMapper;
755
-
756
- LhsMapper lhs(m_leftImpl, m_left_nocontract_strides, m_i_strides,
757
- m_left_contracting_strides, m_k_strides);
758
- RhsMapper rhs(m_rightImpl, m_right_nocontract_strides, m_j_strides,
759
- m_right_contracting_strides, m_k_strides);
760
-
761
- const Scalar alpha(1);
762
- const Index resIncr(1);
763
-
764
- // zero out the result buffer (which must be of size at least rows * sizeof(Scalar)
765
- m_device.memset(buffer, 0, rows * sizeof(Scalar));
766
-
767
- internal::general_matrix_vector_product<Index,LhsScalar,LhsMapper,ColMajor,false,RhsScalar,RhsMapper,false>::run(
768
- rows, cols, lhs, rhs,
769
- buffer, resIncr, alpha);
770
-
771
- typedef internal::blas_data_mapper<Scalar, Index, ColMajor> OutputMapper;
772
- m_output_kernel(OutputMapper(buffer, rows), m_tensor_contraction_params,
773
- static_cast<Index>(0), static_cast<Index>(0), rows,
774
- static_cast<Index>(1));
775
- }
776
-
777
- template <bool lhs_inner_dim_contiguous, bool rhs_inner_dim_contiguous, bool rhs_inner_dim_reordered, int Alignment>
778
- #if !defined(EIGEN_HIPCC)
779
- EIGEN_DEVICE_FUNC
780
- #endif
781
- void evalGemm(Scalar* buffer) const {
782
- // columns in left side, rows in right side
783
- const Index k = this->m_k_size;
784
- this->template evalGemmPartial<lhs_inner_dim_contiguous,
785
- rhs_inner_dim_contiguous,
786
- rhs_inner_dim_reordered,
787
- Alignment, true>(buffer, 0, k, 1);
788
- }
789
-
790
- template <bool lhs_inner_dim_contiguous, bool rhs_inner_dim_contiguous,
791
- bool rhs_inner_dim_reordered, int Alignment>
792
- EIGEN_DEVICE_FUNC void evalGemmPartialWithoutOutputKernel(
793
- Scalar* buffer, Index k_start, Index k_end, int num_threads) const {
794
- evalGemmPartial<lhs_inner_dim_contiguous, rhs_inner_dim_contiguous,
795
- rhs_inner_dim_reordered, Alignment,
796
- /*use_output_kernel*/ false>(buffer, k_start, k_end,
797
- num_threads);
798
- }
799
-
800
- template <bool lhs_inner_dim_contiguous, bool rhs_inner_dim_contiguous, bool rhs_inner_dim_reordered, int Alignment, bool use_output_kernel>
801
- EIGEN_DEVICE_FUNC void evalGemmPartial(Scalar* buffer, Index k_start, Index k_end, int num_threads) const {
802
- eigen_assert(k_end >= k_start && k_start >= 0 && k_end <= this->m_k_size);
803
- // columns in slice on left side, rows on right side
804
- const Index k_slice = k_end - k_start;
805
-
806
- // rows in left side
807
- const Index m = this->m_i_size;
808
-
809
- // columns in right side
810
- const Index n = this->m_j_size;
811
-
812
- // define data mappers for Lhs and Rhs
813
- typedef typename internal::remove_const<typename EvalLeftArgType::Scalar>::type LhsScalar;
814
- typedef typename internal::remove_const<typename EvalRightArgType::Scalar>::type RhsScalar;
815
-
816
- typedef TensorEvaluator<EvalLeftArgType, Device> LeftEvaluator;
817
- typedef TensorEvaluator<EvalRightArgType, Device> RightEvaluator;
818
-
819
- const Index lhs_packet_size = internal::unpacket_traits<typename LeftEvaluator::PacketReturnType>::size;
820
- const Index rhs_packet_size = internal::unpacket_traits<typename RightEvaluator::PacketReturnType>::size;
821
-
822
- typedef internal::TensorContractionInputMapper<LhsScalar, Index, internal::Lhs,
823
- LeftEvaluator, left_nocontract_t,
824
- contract_t, lhs_packet_size,
825
- lhs_inner_dim_contiguous,
826
- false, Unaligned> LhsMapper;
827
-
828
- typedef internal::TensorContractionInputMapper<RhsScalar, Index, internal::Rhs,
829
- RightEvaluator, right_nocontract_t,
830
- contract_t, rhs_packet_size,
831
- rhs_inner_dim_contiguous,
832
- rhs_inner_dim_reordered, Unaligned> RhsMapper;
833
-
834
- typedef internal::blas_data_mapper<Scalar, Index, ColMajor> OutputMapper;
835
-
836
- typedef internal::TensorContractionKernel<
837
- Scalar, LhsScalar, RhsScalar, Index, OutputMapper, LhsMapper, RhsMapper>
838
- TensorContractionKernel;
839
-
840
- // initialize data mappers
841
- LhsMapper lhs(this->m_leftImpl, this->m_left_nocontract_strides, this->m_i_strides,
842
- this->m_left_contracting_strides, this->m_k_strides);
843
-
844
- RhsMapper rhs(this->m_rightImpl, this->m_right_nocontract_strides, this->m_j_strides,
845
- this->m_right_contracting_strides, this->m_k_strides);
846
-
847
- OutputMapper output(buffer, m);
848
-
849
- // Sizes of the blocks to load in cache. See the Goto paper for details.
850
- internal::TensorContractionBlocking<Scalar, LhsScalar, RhsScalar,
851
- Index, internal::ShardByCol>
852
- blocking(k_slice, m, n, num_threads);
853
- const Index kc = blocking.kc();
854
- const Index mc = numext::mini(m, blocking.mc());
855
- const Index nc = numext::mini(n, blocking.nc());
856
-
857
- typedef typename TensorContractionKernel::LhsBlock LhsBlock;
858
- typedef typename TensorContractionKernel::RhsBlock RhsBlock;
859
-
860
- LhsBlock blockA;
861
- RhsBlock blockB;
862
-
863
- TensorContractionKernel kernel(m, k_slice, n, mc, kc, nc);
864
-
865
- typedef typename TensorContractionKernel::BlockMemHandle BlockMemHandle;
866
- const BlockMemHandle packed_mem =
867
- kernel.allocate(this->m_device, &blockA, &blockB);
868
-
869
- // If a contraction kernel does not support beta, explicitly initialize
870
- // output buffer with zeroes.
871
- if (!TensorContractionKernel::HasBeta) {
872
- this->m_device.memset(buffer, 0, m * n * sizeof(Scalar));
873
- }
874
-
875
- for(Index i2=0; i2<m; i2+=mc)
876
- {
877
- const Index actual_mc = numext::mini(i2+mc,m)-i2;
878
- for (Index k2 = k_start; k2 < k_end; k2 += kc) {
879
- // make sure we don't overshoot right edge of left matrix, then pack vertical panel
880
- const Index actual_kc = numext::mini(k2 + kc, k_end) - k2;
881
- kernel.packLhs(&blockA, lhs.getSubMapper(i2, k2), actual_kc, actual_mc);
882
-
883
- // If kernel supports beta, there is no need to initialize output
884
- // buffer with zeroes.
885
- const Scalar alpha = Scalar(1);
886
- const Scalar beta = (TensorContractionKernel::HasBeta && k2 == k_start)
887
- ? Scalar(0)
888
- : Scalar(1);
889
-
890
- // series of horizontal blocks
891
- for (Index j2 = 0; j2 < n; j2 += nc) {
892
- // make sure we don't overshoot right edge of right matrix, then pack block
893
- const Index actual_nc = numext::mini(j2 + nc, n) - j2;
894
- kernel.packRhs(&blockB, rhs.getSubMapper(k2, j2), actual_kc,
895
- actual_nc);
896
-
897
- // call gebp (matrix kernel)
898
- // The parameters here are copied from Eigen's GEMM implementation
899
- const OutputMapper output_mapper = output.getSubMapper(i2, j2);
900
- kernel.invoke(output_mapper, blockA, blockB, actual_mc, actual_kc,
901
- actual_nc, alpha, beta);
902
-
903
- // We are done with this [i2, j2] output block.
904
- if (use_output_kernel && k2 + kc >= k_end) {
905
- m_output_kernel(output_mapper, m_tensor_contraction_params, i2, j2,
906
- actual_mc, actual_nc);
907
- }
908
- }
909
- }
910
- }
911
-
912
- kernel.deallocate(this->m_device, packed_mem);
913
- }
914
-
915
- EIGEN_STRONG_INLINE void cleanup() {
916
- m_leftImpl.cleanup();
917
- m_rightImpl.cleanup();
918
-
919
- if (m_result != NULL) {
920
- m_device.deallocate(m_result);
921
- m_result = NULL;
922
- }
923
- }
924
-
925
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const {
926
- return m_result[index];
927
- }
928
-
929
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool) const {
930
- return TensorOpCost(sizeof(CoeffReturnType), 0, 0);
931
- }
932
-
933
- template<int LoadMode>
934
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const {
935
- return internal::ploadt<PacketReturnType, LoadMode>(m_result + index);
936
- }
937
-
938
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE EvaluatorPointerType data() const { return m_result; }
939
-
940
- protected:
941
- Dimensions m_dimensions;
942
-
943
- contract_t m_k_strides;
944
- contract_t m_left_contracting_strides;
945
- contract_t m_right_contracting_strides;
946
-
947
- bool m_lhs_inner_dim_contiguous;
948
- bool m_rhs_inner_dim_contiguous;
949
- bool m_rhs_inner_dim_reordered;
950
-
951
- left_nocontract_t m_i_strides;
952
- right_nocontract_t m_j_strides;
953
- left_nocontract_t m_left_nocontract_strides;
954
- right_nocontract_t m_right_nocontract_strides;
955
-
956
- Index m_i_size;
957
- Index m_j_size;
958
- Index m_k_size;
959
-
960
- TensorContractionParams m_tensor_contraction_params;
961
-
962
- TensorEvaluator<EvalLeftArgType, Device> m_leftImpl;
963
- TensorEvaluator<EvalRightArgType, Device> m_rightImpl;
964
- const Device EIGEN_DEVICE_REF m_device;
965
- OutputKernelType m_output_kernel;
966
- EvaluatorPointerType m_result;
967
- };
968
-
969
-
970
- // evaluator for default device
971
- template<typename Indices, typename LeftArgType, typename RightArgType, typename OutputKernelType, typename Device>
972
- struct TensorEvaluator<const TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType>, Device> :
973
- public TensorContractionEvaluatorBase<
974
- TensorEvaluator<const TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType>, Device> > {
975
- typedef TensorEvaluator<const TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType>, Device> Self;
976
- typedef TensorContractionEvaluatorBase<Self> Base;
977
-
978
- typedef TensorContractionOp<Indices, LeftArgType, RightArgType, OutputKernelType> XprType;
979
- typedef typename internal::remove_const<typename XprType::Scalar>::type Scalar;
980
- typedef typename XprType::Index Index;
981
- typedef typename XprType::CoeffReturnType CoeffReturnType;
982
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
983
-
984
- enum {
985
- Layout = TensorEvaluator<LeftArgType, Device>::Layout
986
- };
987
-
988
- // Most of the code is assuming that both input tensors are ColMajor. If the
989
- // inputs are RowMajor, we will "cheat" by swapping the LHS and RHS:
990
- // If we want to compute A * B = C, where A is LHS and B is RHS, the code
991
- // will pretend B is LHS and A is RHS.
992
- typedef typename internal::conditional<
993
- static_cast<int>(Layout) == static_cast<int>(ColMajor), LeftArgType, RightArgType>::type EvalLeftArgType;
994
- typedef typename internal::conditional<
995
- static_cast<int>(Layout) == static_cast<int>(ColMajor), RightArgType, LeftArgType>::type EvalRightArgType;
996
-
997
- static const int LDims =
998
- internal::array_size<typename TensorEvaluator<EvalLeftArgType, Device>::Dimensions>::value;
999
- static const int RDims =
1000
- internal::array_size<typename TensorEvaluator<EvalRightArgType, Device>::Dimensions>::value;
1001
- static const int ContractDims = internal::array_size<Indices>::value;
1002
-
1003
- typedef array<Index, ContractDims> contract_t;
1004
- typedef array<Index, LDims - ContractDims> left_nocontract_t;
1005
- typedef array<Index, RDims - ContractDims> right_nocontract_t;
1006
-
1007
- static const int NumDims = LDims + RDims - 2 * ContractDims;
1008
-
1009
- // Could we use NumDimensions here?
1010
- typedef DSizes<Index, NumDims> Dimensions;
1011
-
1012
- TensorEvaluator(const XprType& op, const Device& device) :
1013
- Base(op, device) { }
1014
-
1015
- template <int Alignment>
1016
- void evalProduct(Scalar* buffer) const {
1017
- TENSOR_CONTRACTION_DISPATCH(this->template evalProductSequential, Alignment, (buffer));
1018
- }
1019
- };
1020
-
1021
- } // end namespace Eigen
1022
-
1023
- #endif // EIGEN_CXX11_TENSOR_TENSOR_CONTRACTION_H