sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,357 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2016 Eugene Brevdo <ebrevdo@gmail.com>
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- // Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_BESSELFUNCTIONS_FUNCTORS_H
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- #define EIGEN_BESSELFUNCTIONS_FUNCTORS_H
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-
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- namespace Eigen {
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-
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- namespace internal {
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-
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- /** \internal
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- * \brief Template functor to compute the modified Bessel function of the first
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- * kind of order zero.
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- * \sa class CwiseUnaryOp, Cwise::bessel_i0()
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- */
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- template <typename Scalar>
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- struct scalar_bessel_i0_op {
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- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_i0_op)
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
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- using numext::bessel_i0;
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- return bessel_i0(x);
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- }
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- typedef typename packet_traits<Scalar>::type Packet;
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
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- return internal::pbessel_i0(x);
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- }
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- };
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- template <typename Scalar>
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- struct functor_traits<scalar_bessel_i0_op<Scalar> > {
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- enum {
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- // On average, a Chebyshev polynomial of order N=20 is computed.
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- // The cost is N multiplications and 2N additions. We also add
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- // the cost of an additional exp over i0e.
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- Cost = 28 * NumTraits<Scalar>::MulCost + 48 * NumTraits<Scalar>::AddCost,
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- PacketAccess = packet_traits<Scalar>::HasBessel
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- };
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- };
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-
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- /** \internal
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- * \brief Template functor to compute the exponentially scaled modified Bessel
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- * function of the first kind of order zero
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- * \sa class CwiseUnaryOp, Cwise::bessel_i0e()
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- */
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- template <typename Scalar>
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- struct scalar_bessel_i0e_op {
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- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_i0e_op)
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
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- using numext::bessel_i0e;
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- return bessel_i0e(x);
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- }
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- typedef typename packet_traits<Scalar>::type Packet;
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
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- return internal::pbessel_i0e(x);
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- }
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- };
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- template <typename Scalar>
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- struct functor_traits<scalar_bessel_i0e_op<Scalar> > {
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- enum {
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- // On average, a Chebyshev polynomial of order N=20 is computed.
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- // The cost is N multiplications and 2N additions.
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- Cost = 20 * NumTraits<Scalar>::MulCost + 40 * NumTraits<Scalar>::AddCost,
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- PacketAccess = packet_traits<Scalar>::HasBessel
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- };
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- };
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-
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- /** \internal
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- * \brief Template functor to compute the modified Bessel function of the first
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- * kind of order one
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- * \sa class CwiseUnaryOp, Cwise::bessel_i1()
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- */
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- template <typename Scalar>
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- struct scalar_bessel_i1_op {
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- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_i1_op)
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
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- using numext::bessel_i1;
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- return bessel_i1(x);
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- }
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- typedef typename packet_traits<Scalar>::type Packet;
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
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- return internal::pbessel_i1(x);
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- }
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- };
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- template <typename Scalar>
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- struct functor_traits<scalar_bessel_i1_op<Scalar> > {
92
- enum {
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- // On average, a Chebyshev polynomial of order N=20 is computed.
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- // The cost is N multiplications and 2N additions. We also add
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- // the cost of an additional exp over i1e.
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- Cost = 28 * NumTraits<Scalar>::MulCost + 48 * NumTraits<Scalar>::AddCost,
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- PacketAccess = packet_traits<Scalar>::HasBessel
98
- };
99
- };
100
-
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- /** \internal
102
- * \brief Template functor to compute the exponentially scaled modified Bessel
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- * function of the first kind of order zero
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- * \sa class CwiseUnaryOp, Cwise::bessel_i1e()
105
- */
106
- template <typename Scalar>
107
- struct scalar_bessel_i1e_op {
108
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_i1e_op)
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
110
- using numext::bessel_i1e;
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- return bessel_i1e(x);
112
- }
113
- typedef typename packet_traits<Scalar>::type Packet;
114
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
115
- return internal::pbessel_i1e(x);
116
- }
117
- };
118
- template <typename Scalar>
119
- struct functor_traits<scalar_bessel_i1e_op<Scalar> > {
120
- enum {
121
- // On average, a Chebyshev polynomial of order N=20 is computed.
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- // The cost is N multiplications and 2N additions.
123
- Cost = 20 * NumTraits<Scalar>::MulCost + 40 * NumTraits<Scalar>::AddCost,
124
- PacketAccess = packet_traits<Scalar>::HasBessel
125
- };
126
- };
127
-
128
- /** \internal
129
- * \brief Template functor to compute the Bessel function of the second kind of
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- * order zero
131
- * \sa class CwiseUnaryOp, Cwise::bessel_j0()
132
- */
133
- template <typename Scalar>
134
- struct scalar_bessel_j0_op {
135
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_j0_op)
136
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
137
- using numext::bessel_j0;
138
- return bessel_j0(x);
139
- }
140
- typedef typename packet_traits<Scalar>::type Packet;
141
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
142
- return internal::pbessel_j0(x);
143
- }
144
- };
145
- template <typename Scalar>
146
- struct functor_traits<scalar_bessel_j0_op<Scalar> > {
147
- enum {
148
- // 6 polynomial of order ~N=8 is computed.
149
- // The cost is N multiplications and N additions each, along with a
150
- // sine, cosine and rsqrt cost.
151
- Cost = 63 * NumTraits<Scalar>::MulCost + 48 * NumTraits<Scalar>::AddCost,
152
- PacketAccess = packet_traits<Scalar>::HasBessel
153
- };
154
- };
155
-
156
- /** \internal
157
- * \brief Template functor to compute the Bessel function of the second kind of
158
- * order zero
159
- * \sa class CwiseUnaryOp, Cwise::bessel_y0()
160
- */
161
- template <typename Scalar>
162
- struct scalar_bessel_y0_op {
163
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_y0_op)
164
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
165
- using numext::bessel_y0;
166
- return bessel_y0(x);
167
- }
168
- typedef typename packet_traits<Scalar>::type Packet;
169
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
170
- return internal::pbessel_y0(x);
171
- }
172
- };
173
- template <typename Scalar>
174
- struct functor_traits<scalar_bessel_y0_op<Scalar> > {
175
- enum {
176
- // 6 polynomial of order ~N=8 is computed.
177
- // The cost is N multiplications and N additions each, along with a
178
- // sine, cosine, rsqrt and j0 cost.
179
- Cost = 126 * NumTraits<Scalar>::MulCost + 96 * NumTraits<Scalar>::AddCost,
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- PacketAccess = packet_traits<Scalar>::HasBessel
181
- };
182
- };
183
-
184
- /** \internal
185
- * \brief Template functor to compute the Bessel function of the first kind of
186
- * order one
187
- * \sa class CwiseUnaryOp, Cwise::bessel_j1()
188
- */
189
- template <typename Scalar>
190
- struct scalar_bessel_j1_op {
191
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_j1_op)
192
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
193
- using numext::bessel_j1;
194
- return bessel_j1(x);
195
- }
196
- typedef typename packet_traits<Scalar>::type Packet;
197
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
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- return internal::pbessel_j1(x);
199
- }
200
- };
201
- template <typename Scalar>
202
- struct functor_traits<scalar_bessel_j1_op<Scalar> > {
203
- enum {
204
- // 6 polynomial of order ~N=8 is computed.
205
- // The cost is N multiplications and N additions each, along with a
206
- // sine, cosine and rsqrt cost.
207
- Cost = 63 * NumTraits<Scalar>::MulCost + 48 * NumTraits<Scalar>::AddCost,
208
- PacketAccess = packet_traits<Scalar>::HasBessel
209
- };
210
- };
211
-
212
- /** \internal
213
- * \brief Template functor to compute the Bessel function of the second kind of
214
- * order one
215
- * \sa class CwiseUnaryOp, Cwise::bessel_j1e()
216
- */
217
- template <typename Scalar>
218
- struct scalar_bessel_y1_op {
219
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_y1_op)
220
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
221
- using numext::bessel_y1;
222
- return bessel_y1(x);
223
- }
224
- typedef typename packet_traits<Scalar>::type Packet;
225
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
226
- return internal::pbessel_y1(x);
227
- }
228
- };
229
- template <typename Scalar>
230
- struct functor_traits<scalar_bessel_y1_op<Scalar> > {
231
- enum {
232
- // 6 polynomial of order ~N=8 is computed.
233
- // The cost is N multiplications and N additions each, along with a
234
- // sine, cosine, rsqrt and j1 cost.
235
- Cost = 126 * NumTraits<Scalar>::MulCost + 96 * NumTraits<Scalar>::AddCost,
236
- PacketAccess = packet_traits<Scalar>::HasBessel
237
- };
238
- };
239
-
240
- /** \internal
241
- * \brief Template functor to compute the modified Bessel function of the second
242
- * kind of order zero
243
- * \sa class CwiseUnaryOp, Cwise::bessel_k0()
244
- */
245
- template <typename Scalar>
246
- struct scalar_bessel_k0_op {
247
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_k0_op)
248
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
249
- using numext::bessel_k0;
250
- return bessel_k0(x);
251
- }
252
- typedef typename packet_traits<Scalar>::type Packet;
253
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
254
- return internal::pbessel_k0(x);
255
- }
256
- };
257
- template <typename Scalar>
258
- struct functor_traits<scalar_bessel_k0_op<Scalar> > {
259
- enum {
260
- // On average, a Chebyshev polynomial of order N=10 is computed.
261
- // The cost is N multiplications and 2N additions. In addition we compute
262
- // i0, a log, exp and prsqrt and sin and cos.
263
- Cost = 68 * NumTraits<Scalar>::MulCost + 88 * NumTraits<Scalar>::AddCost,
264
- PacketAccess = packet_traits<Scalar>::HasBessel
265
- };
266
- };
267
-
268
- /** \internal
269
- * \brief Template functor to compute the exponentially scaled modified Bessel
270
- * function of the second kind of order zero
271
- * \sa class CwiseUnaryOp, Cwise::bessel_k0e()
272
- */
273
- template <typename Scalar>
274
- struct scalar_bessel_k0e_op {
275
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_k0e_op)
276
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
277
- using numext::bessel_k0e;
278
- return bessel_k0e(x);
279
- }
280
- typedef typename packet_traits<Scalar>::type Packet;
281
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
282
- return internal::pbessel_k0e(x);
283
- }
284
- };
285
- template <typename Scalar>
286
- struct functor_traits<scalar_bessel_k0e_op<Scalar> > {
287
- enum {
288
- // On average, a Chebyshev polynomial of order N=10 is computed.
289
- // The cost is N multiplications and 2N additions. In addition we compute
290
- // i0, a log, exp and prsqrt and sin and cos.
291
- Cost = 68 * NumTraits<Scalar>::MulCost + 88 * NumTraits<Scalar>::AddCost,
292
- PacketAccess = packet_traits<Scalar>::HasBessel
293
- };
294
- };
295
-
296
- /** \internal
297
- * \brief Template functor to compute the modified Bessel function of the
298
- * second kind of order one
299
- * \sa class CwiseUnaryOp, Cwise::bessel_k1()
300
- */
301
- template <typename Scalar>
302
- struct scalar_bessel_k1_op {
303
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_k1_op)
304
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
305
- using numext::bessel_k1;
306
- return bessel_k1(x);
307
- }
308
- typedef typename packet_traits<Scalar>::type Packet;
309
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
310
- return internal::pbessel_k1(x);
311
- }
312
- };
313
- template <typename Scalar>
314
- struct functor_traits<scalar_bessel_k1_op<Scalar> > {
315
- enum {
316
- // On average, a Chebyshev polynomial of order N=10 is computed.
317
- // The cost is N multiplications and 2N additions. In addition we compute
318
- // i1, a log, exp and prsqrt and sin and cos.
319
- Cost = 68 * NumTraits<Scalar>::MulCost + 88 * NumTraits<Scalar>::AddCost,
320
- PacketAccess = packet_traits<Scalar>::HasBessel
321
- };
322
- };
323
-
324
- /** \internal
325
- * \brief Template functor to compute the exponentially scaled modified Bessel
326
- * function of the second kind of order one
327
- * \sa class CwiseUnaryOp, Cwise::bessel_k1e()
328
- */
329
- template <typename Scalar>
330
- struct scalar_bessel_k1e_op {
331
- EIGEN_EMPTY_STRUCT_CTOR(scalar_bessel_k1e_op)
332
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& x) const {
333
- using numext::bessel_k1e;
334
- return bessel_k1e(x);
335
- }
336
- typedef typename packet_traits<Scalar>::type Packet;
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
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- return internal::pbessel_k1e(x);
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- }
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- };
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- template <typename Scalar>
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- struct functor_traits<scalar_bessel_k1e_op<Scalar> > {
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- enum {
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- // On average, a Chebyshev polynomial of order N=10 is computed.
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- // The cost is N multiplications and 2N additions. In addition we compute
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- // i1, a log, exp and prsqrt and sin and cos.
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- Cost = 68 * NumTraits<Scalar>::MulCost + 88 * NumTraits<Scalar>::AddCost,
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- PacketAccess = packet_traits<Scalar>::HasBessel
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- };
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- };
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-
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-
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- } // end namespace internal
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-
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- } // end namespace Eigen
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-
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- #endif // EIGEN_BESSELFUNCTIONS_FUNCTORS_H
@@ -1,66 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_BESSELFUNCTIONS_HALF_H
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- #define EIGEN_BESSELFUNCTIONS_HALF_H
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-
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- namespace Eigen {
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- namespace numext {
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-
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- #if EIGEN_HAS_C99_MATH
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_i0(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_i0(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_i0e(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_i0e(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_i1(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_i1(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_i1e(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_i1e(static_cast<float>(x)));
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- }
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_j0(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_j0(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_j1(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_j1(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_y0(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_y0(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_y1(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_y1(static_cast<float>(x)));
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- }
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_k0(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_k0(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_k0e(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_k0e(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_k1(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_k1(static_cast<float>(x)));
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- }
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- template <>
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- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half bessel_k1e(const Eigen::half& x) {
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- return Eigen::half(Eigen::numext::bessel_k1e(static_cast<float>(x)));
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- }
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- #endif
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-
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- } // end namespace numext
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- } // end namespace Eigen
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-
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- #endif // EIGEN_BESSELFUNCTIONS_HALF_H