sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl
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- sequenzo/__init__.py +64 -8
- sequenzo/big_data/clara/clara.py +1 -1
- sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
- sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
- sequenzo/clustering/KMedoids.py +39 -0
- sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
- sequenzo/clustering/hierarchical_clustering.py +304 -8
- sequenzo/define_sequence_data.py +44 -3
- sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
- sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
- sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
- sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
- sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
- sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
- sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
- sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
- sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
- sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
- sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
- sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
- sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
- sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
- sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
- sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
- sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
- sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
- sequenzo/multidomain/cat.py +0 -53
- sequenzo/multidomain/idcd.py +0 -1
- sequenzo/openmp_setup.py +233 -0
- sequenzo/sequence_characteristics/__init__.py +4 -0
- sequenzo/sequence_characteristics/complexity_index.py +17 -57
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
- sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
- sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
- sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
- sequenzo/sequence_characteristics/turbulence.py +47 -67
- sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
- sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
- sequenzo/visualization/plot_sequence_index.py +58 -35
- sequenzo/visualization/plot_state_distribution.py +57 -36
- sequenzo/visualization/plot_transition_matrix.py +21 -22
- sequenzo/with_event_history_analysis/__init__.py +35 -0
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
- sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
- {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
- sequenzo-0.1.19.dist-info/RECORD +272 -0
- sequenzo/dissimilarity_measures/setup.py +0 -35
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
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- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
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- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
- sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
- sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
- sequenzo-0.1.17.dist-info/RECORD +0 -631
- {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
- {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
- {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
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// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#include <cstdlib>
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#include <cerrno>
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#include <ctime>
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#include <iostream>
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#include <fstream>
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#include <string>
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#include <sstream>
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#include <vector>
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#include <typeinfo>
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#include <functional>
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// The following includes of STL headers have to be done _before_ the
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// definition of macros min() and max(). The reason is that many STL
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// implementations will not work properly as the min and max symbols collide
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// with the STL functions std:min() and std::max(). The STL headers may check
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// for the macro definition of min/max and issue a warning or undefine the
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// macros.
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//
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// Still, Windows defines min() and max() in windef.h as part of the regular
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// Windows system interfaces and many other Windows APIs depend on these
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// macros being available. To prevent the macro expansion of min/max and to
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// make Eigen compatible with the Windows environment all function calls of
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// std::min() and std::max() have to be written with parenthesis around the
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// function name.
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//
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// All STL headers used by Eigen should be included here. Because main.h is
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// included before any Eigen header and because the STL headers are guarded
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// against multiple inclusions, no STL header will see our own min/max macro
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// definitions.
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#include <limits>
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#include <algorithm>
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// Disable ICC's std::complex operator specializations so we can use our own.
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#define _OVERRIDE_COMPLEX_SPECIALIZATION_ 1
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#include <complex>
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#include <deque>
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#include <queue>
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#include <cassert>
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#include <list>
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#if __cplusplus >= 201103L || (defined(_MSVC_LANG) && _MSVC_LANG >= 201103L)
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#include <random>
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#include <chrono>
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#ifdef EIGEN_USE_THREADS
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#endif
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#endif
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// Same for cuda_fp16.h
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#if defined(__CUDACC__) && !defined(EIGEN_NO_CUDA)
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// Means the compiler is either nvcc or clang with CUDA enabled
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#define EIGEN_CUDACC __CUDACC__
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#endif
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#if defined(EIGEN_CUDACC)
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#define EIGEN_CUDA_SDK_VER (CUDA_VERSION * 10)
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#else
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#endif
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#endif
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// To test that all calls from Eigen code to std::min() and std::max() are
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// are defined here and any not-parenthesized min/max call will cause a
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// compiler error.
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#if !defined(__HIPCC__) && !defined(EIGEN_USE_SYCL)
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//
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// <thread>
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// <regex>
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// <unordered_map>
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// which seem to contain not-parenthesized calls to "max"/"min", triggering the following check and causing the compile to fail
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//
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// Including those header files before the following macro definition for "min" / "max", only partially resolves the issue
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// This is because other HIP header files also define "isnan" / "isinf" / "isfinite" functions, which are needed in other
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// headers.
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//
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//
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#define min(A,B) please_protect_your_min_with_parentheses
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#define max(A,B) please_protect_your_max_with_parentheses
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#define isnan(X) please_protect_your_isnan_with_parentheses
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#define isinf(X) please_protect_your_isinf_with_parentheses
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#define isfinite(X) please_protect_your_isfinite_with_parentheses
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#endif
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// test possible conflicts
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struct real {};
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struct imag {};
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#define FORBIDDEN_IDENTIFIER (this_identifier_is_forbidden_to_avoid_clashes) this_identifier_is_forbidden_to_avoid_clashes
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// B0 is defined in POSIX header termios.h
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// Unit tests calling Eigen's blas library must preserve the default blocking size
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#ifndef EIGEN_NO_DEBUG_SMALL_PRODUCT_BLOCKS
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#endif
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}
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#define EIGEN_DENSE_STORAGE_CTOR_PLUGIN { on_temporary_creation(size); }
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#define VERIFY_EVALUATION_COUNT(XPR,N) {\
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XPR; \
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namespace Eigen
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{
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class EigenTest
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{
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public:
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EigenTest() : m_func(0) {}
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EigenTest(const char* a_name, void (*func)(void))
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: m_name(a_name), m_func(func)
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const std::string& name() const { return m_name; }
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void operator()() const { m_func(); }
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static const std::vector<EigenTest*>& all() { return get_registered_tests(); }
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protected:
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{
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}
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};
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#define EIGEN_DECLARE_TEST(X) \
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void EIGEN_CAT(test_,X) (); \
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static EigenTest EIGEN_CAT(test_handler_,X) (EIGEN_MAKESTRING(X), & EIGEN_CAT(test_,X)); \
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void EIGEN_CAT(test_,X) ()
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}
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#define EIGEN_DEFAULT_IO_FORMAT IOFormat(4, 0, " ", "\n", "", "", "", "")
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#if (defined(_CPPUNWIND) || defined(__EXCEPTIONS)) && !defined(__CUDA_ARCH__) && !defined(__HIP_DEVICE_COMPILE__) && !defined(__SYCL_DEVICE_ONLY__)
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#define EIGEN_EXCEPTIONS
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namespace Eigen
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{
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// case the exception is not properly caught.
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// This may happen when a second exceptions is triggered in a destructor.
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static bool no_more_assert = false;
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static bool report_on_cerr_on_assert_failure = true;
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struct eigen_assert_exception
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{
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eigen_assert_exception(void) {}
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~eigen_assert_exception() { Eigen::no_more_assert = false; }
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};
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struct eigen_static_assert_exception
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{
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eigen_static_assert_exception(void) {}
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~eigen_static_assert_exception() { Eigen::no_more_assert = false; }
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};
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}
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// If EIGEN_DEBUG_ASSERTS is defined and if no assertion is triggered while
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// one should have been, then the list of executed assertions is printed out.
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//
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// EIGEN_DEBUG_ASSERTS is not enabled by default as it
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// significantly increases the compilation time
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// and might even introduce side effects that would hide
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// some memory errors.
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#ifdef EIGEN_DEBUG_ASSERTS
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namespace Eigen
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{
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namespace internal
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{
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static bool push_assert = false;
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}
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static std::vector<std::string> eigen_assert_list;
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}
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257
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#define eigen_assert(a) \
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if( (!(a)) && (!no_more_assert) ) \
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{ \
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260
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if(report_on_cerr_on_assert_failure) \
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std::cerr << #a << " " __FILE__ << "(" << __LINE__ << ")\n"; \
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262
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Eigen::no_more_assert = true; \
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EIGEN_THROW_X(Eigen::eigen_assert_exception()); \
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} \
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265
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else if (Eigen::internal::push_assert) \
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266
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{ \
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267
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eigen_assert_list.push_back(std::string(EIGEN_MAKESTRING(__FILE__) " (" EIGEN_MAKESTRING(__LINE__) ") : " #a) ); \
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}
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270
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#ifdef EIGEN_EXCEPTIONS
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#define VERIFY_RAISES_ASSERT(a) \
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{ \
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Eigen::no_more_assert = false; \
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Eigen::eigen_assert_list.clear(); \
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Eigen::internal::push_assert = true; \
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Eigen::report_on_cerr_on_assert_failure = false; \
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try { \
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a; \
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279
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std::cerr << "One of the following asserts should have been triggered:\n"; \
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for (uint ai=0 ; ai<eigen_assert_list.size() ; ++ai) \
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std::cerr << " " << eigen_assert_list[ai] << "\n"; \
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VERIFY(Eigen::should_raise_an_assert && # a); \
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283
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} catch (Eigen::eigen_assert_exception) { \
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Eigen::internal::push_assert = false; VERIFY(true); \
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} \
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286
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Eigen::report_on_cerr_on_assert_failure = true; \
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287
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Eigen::internal::push_assert = false; \
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}
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#endif //EIGEN_EXCEPTIONS
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291
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#elif !defined(__CUDACC__) && !defined(__HIPCC__) && !defined(SYCL_DEVICE_ONLY) // EIGEN_DEBUG_ASSERTS
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// see bug 89. The copy_bool here is working around a bug in gcc <= 4.3
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293
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#define eigen_assert(a) \
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294
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if( (!Eigen::internal::copy_bool(a)) && (!no_more_assert) )\
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295
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{ \
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296
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Eigen::no_more_assert = true; \
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297
|
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if(report_on_cerr_on_assert_failure) \
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298
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eigen_plain_assert(a); \
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299
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else \
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300
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EIGEN_THROW_X(Eigen::eigen_assert_exception()); \
|
|
301
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}
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302
|
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|
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303
|
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#ifdef EIGEN_EXCEPTIONS
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304
|
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#define VERIFY_RAISES_ASSERT(a) { \
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305
|
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Eigen::no_more_assert = false; \
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|
306
|
-
Eigen::report_on_cerr_on_assert_failure = false; \
|
|
307
|
-
try { \
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308
|
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a; \
|
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309
|
-
VERIFY(Eigen::should_raise_an_assert && # a); \
|
|
310
|
-
} \
|
|
311
|
-
catch (Eigen::eigen_assert_exception&) { VERIFY(true); } \
|
|
312
|
-
Eigen::report_on_cerr_on_assert_failure = true; \
|
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313
|
-
}
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314
|
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#endif // EIGEN_EXCEPTIONS
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315
|
-
#endif // EIGEN_DEBUG_ASSERTS
|
|
316
|
-
|
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317
|
-
#if defined(TEST_CHECK_STATIC_ASSERTIONS) && defined(EIGEN_EXCEPTIONS)
|
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318
|
-
#define EIGEN_STATIC_ASSERT(a,MSG) \
|
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319
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if( (!Eigen::internal::copy_bool(a)) && (!no_more_assert) )\
|
|
320
|
-
{ \
|
|
321
|
-
Eigen::no_more_assert = true; \
|
|
322
|
-
if(report_on_cerr_on_assert_failure) \
|
|
323
|
-
eigen_plain_assert((a) && #MSG); \
|
|
324
|
-
else \
|
|
325
|
-
EIGEN_THROW_X(Eigen::eigen_static_assert_exception()); \
|
|
326
|
-
}
|
|
327
|
-
#define VERIFY_RAISES_STATIC_ASSERT(a) { \
|
|
328
|
-
Eigen::no_more_assert = false; \
|
|
329
|
-
Eigen::report_on_cerr_on_assert_failure = false; \
|
|
330
|
-
try { \
|
|
331
|
-
a; \
|
|
332
|
-
VERIFY(Eigen::should_raise_an_assert && # a); \
|
|
333
|
-
} \
|
|
334
|
-
catch (Eigen::eigen_static_assert_exception&) { VERIFY(true); } \
|
|
335
|
-
Eigen::report_on_cerr_on_assert_failure = true; \
|
|
336
|
-
}
|
|
337
|
-
#endif // TEST_CHECK_STATIC_ASSERTIONS
|
|
338
|
-
|
|
339
|
-
#ifndef VERIFY_RAISES_ASSERT
|
|
340
|
-
#define VERIFY_RAISES_ASSERT(a) \
|
|
341
|
-
std::cout << "Can't VERIFY_RAISES_ASSERT( " #a " ) with exceptions disabled\n";
|
|
342
|
-
#endif
|
|
343
|
-
#ifndef VERIFY_RAISES_STATIC_ASSERT
|
|
344
|
-
#define VERIFY_RAISES_STATIC_ASSERT(a) \
|
|
345
|
-
std::cout << "Can't VERIFY_RAISES_STATIC_ASSERT( " #a " ) with exceptions disabled\n";
|
|
346
|
-
#endif
|
|
347
|
-
|
|
348
|
-
#if !defined(__CUDACC__) && !defined(__HIPCC__) && !defined(SYCL_DEVICE_ONLY)
|
|
349
|
-
#define EIGEN_USE_CUSTOM_ASSERT
|
|
350
|
-
#endif
|
|
351
|
-
|
|
352
|
-
#else // EIGEN_NO_ASSERTION_CHECKING
|
|
353
|
-
|
|
354
|
-
#define VERIFY_RAISES_ASSERT(a) {}
|
|
355
|
-
#define VERIFY_RAISES_STATIC_ASSERT(a) {}
|
|
356
|
-
|
|
357
|
-
#endif // EIGEN_NO_ASSERTION_CHECKING
|
|
358
|
-
|
|
359
|
-
#define EIGEN_INTERNAL_DEBUGGING
|
|
360
|
-
#include <Eigen/QR> // required for createRandomPIMatrixOfRank
|
|
361
|
-
|
|
362
|
-
inline void verify_impl(bool condition, const char *testname, const char *file, int line, const char *condition_as_string)
|
|
363
|
-
{
|
|
364
|
-
if (!condition)
|
|
365
|
-
{
|
|
366
|
-
if(Eigen::g_test_level>0)
|
|
367
|
-
std::cerr << "WARNING: ";
|
|
368
|
-
std::cerr << "Test " << testname << " failed in " << file << " (" << line << ")"
|
|
369
|
-
<< std::endl << " " << condition_as_string << std::endl;
|
|
370
|
-
std::cerr << "Stack:\n";
|
|
371
|
-
const int test_stack_size = static_cast<int>(Eigen::g_test_stack.size());
|
|
372
|
-
for(int i=test_stack_size-1; i>=0; --i)
|
|
373
|
-
std::cerr << " - " << Eigen::g_test_stack[i] << "\n";
|
|
374
|
-
std::cerr << "\n";
|
|
375
|
-
if(Eigen::g_test_level==0)
|
|
376
|
-
abort();
|
|
377
|
-
}
|
|
378
|
-
}
|
|
379
|
-
|
|
380
|
-
#define VERIFY(a) ::verify_impl(a, g_test_stack.back().c_str(), __FILE__, __LINE__, EIGEN_MAKESTRING(a))
|
|
381
|
-
|
|
382
|
-
#define VERIFY_GE(a, b) ::verify_impl(a >= b, g_test_stack.back().c_str(), __FILE__, __LINE__, EIGEN_MAKESTRING(a >= b))
|
|
383
|
-
#define VERIFY_LE(a, b) ::verify_impl(a <= b, g_test_stack.back().c_str(), __FILE__, __LINE__, EIGEN_MAKESTRING(a <= b))
|
|
384
|
-
|
|
385
|
-
|
|
386
|
-
#define VERIFY_IS_EQUAL(a, b) VERIFY(test_is_equal(a, b, true))
|
|
387
|
-
#define VERIFY_IS_NOT_EQUAL(a, b) VERIFY(test_is_equal(a, b, false))
|
|
388
|
-
#define VERIFY_IS_APPROX(a, b) VERIFY(verifyIsApprox(a, b))
|
|
389
|
-
#define VERIFY_IS_NOT_APPROX(a, b) VERIFY(!test_isApprox(a, b))
|
|
390
|
-
#define VERIFY_IS_MUCH_SMALLER_THAN(a, b) VERIFY(test_isMuchSmallerThan(a, b))
|
|
391
|
-
#define VERIFY_IS_NOT_MUCH_SMALLER_THAN(a, b) VERIFY(!test_isMuchSmallerThan(a, b))
|
|
392
|
-
#define VERIFY_IS_APPROX_OR_LESS_THAN(a, b) VERIFY(test_isApproxOrLessThan(a, b))
|
|
393
|
-
#define VERIFY_IS_NOT_APPROX_OR_LESS_THAN(a, b) VERIFY(!test_isApproxOrLessThan(a, b))
|
|
394
|
-
|
|
395
|
-
#define VERIFY_IS_UNITARY(a) VERIFY(test_isUnitary(a))
|
|
396
|
-
|
|
397
|
-
#define STATIC_CHECK(COND) EIGEN_STATIC_ASSERT( (COND) , EIGEN_INTERNAL_ERROR_PLEASE_FILE_A_BUG_REPORT )
|
|
398
|
-
|
|
399
|
-
#define CALL_SUBTEST(FUNC) do { \
|
|
400
|
-
g_test_stack.push_back(EIGEN_MAKESTRING(FUNC)); \
|
|
401
|
-
FUNC; \
|
|
402
|
-
g_test_stack.pop_back(); \
|
|
403
|
-
} while (0)
|
|
404
|
-
|
|
405
|
-
|
|
406
|
-
namespace Eigen {
|
|
407
|
-
|
|
408
|
-
template<typename T1,typename T2>
|
|
409
|
-
typename internal::enable_if<internal::is_same<T1,T2>::value,bool>::type
|
|
410
|
-
is_same_type(const T1&, const T2&)
|
|
411
|
-
{
|
|
412
|
-
return true;
|
|
413
|
-
}
|
|
414
|
-
|
|
415
|
-
template<typename T> inline typename NumTraits<T>::Real test_precision() { return NumTraits<T>::dummy_precision(); }
|
|
416
|
-
template<> inline float test_precision<float>() { return 1e-3f; }
|
|
417
|
-
template<> inline double test_precision<double>() { return 1e-6; }
|
|
418
|
-
template<> inline long double test_precision<long double>() { return 1e-6l; }
|
|
419
|
-
template<> inline float test_precision<std::complex<float> >() { return test_precision<float>(); }
|
|
420
|
-
template<> inline double test_precision<std::complex<double> >() { return test_precision<double>(); }
|
|
421
|
-
template<> inline long double test_precision<std::complex<long double> >() { return test_precision<long double>(); }
|
|
422
|
-
|
|
423
|
-
#define EIGEN_TEST_SCALAR_TEST_OVERLOAD(TYPE) \
|
|
424
|
-
inline bool test_isApprox(TYPE a, TYPE b) \
|
|
425
|
-
{ return internal::isApprox(a, b, test_precision<TYPE>()); } \
|
|
426
|
-
inline bool test_isMuchSmallerThan(TYPE a, TYPE b) \
|
|
427
|
-
{ return internal::isMuchSmallerThan(a, b, test_precision<TYPE>()); } \
|
|
428
|
-
inline bool test_isApproxOrLessThan(TYPE a, TYPE b) \
|
|
429
|
-
{ return internal::isApproxOrLessThan(a, b, test_precision<TYPE>()); }
|
|
430
|
-
|
|
431
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(short)
|
|
432
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(unsigned short)
|
|
433
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(int)
|
|
434
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(unsigned int)
|
|
435
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(long)
|
|
436
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(unsigned long)
|
|
437
|
-
#if EIGEN_HAS_CXX11
|
|
438
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(long long)
|
|
439
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(unsigned long long)
|
|
440
|
-
#endif
|
|
441
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(float)
|
|
442
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(double)
|
|
443
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(half)
|
|
444
|
-
EIGEN_TEST_SCALAR_TEST_OVERLOAD(bfloat16)
|
|
445
|
-
|
|
446
|
-
#undef EIGEN_TEST_SCALAR_TEST_OVERLOAD
|
|
447
|
-
|
|
448
|
-
#ifndef EIGEN_TEST_NO_COMPLEX
|
|
449
|
-
inline bool test_isApprox(const std::complex<float>& a, const std::complex<float>& b)
|
|
450
|
-
{ return internal::isApprox(a, b, test_precision<std::complex<float> >()); }
|
|
451
|
-
inline bool test_isMuchSmallerThan(const std::complex<float>& a, const std::complex<float>& b)
|
|
452
|
-
{ return internal::isMuchSmallerThan(a, b, test_precision<std::complex<float> >()); }
|
|
453
|
-
|
|
454
|
-
inline bool test_isApprox(const std::complex<double>& a, const std::complex<double>& b)
|
|
455
|
-
{ return internal::isApprox(a, b, test_precision<std::complex<double> >()); }
|
|
456
|
-
inline bool test_isMuchSmallerThan(const std::complex<double>& a, const std::complex<double>& b)
|
|
457
|
-
{ return internal::isMuchSmallerThan(a, b, test_precision<std::complex<double> >()); }
|
|
458
|
-
|
|
459
|
-
#ifndef EIGEN_TEST_NO_LONGDOUBLE
|
|
460
|
-
inline bool test_isApprox(const std::complex<long double>& a, const std::complex<long double>& b)
|
|
461
|
-
{ return internal::isApprox(a, b, test_precision<std::complex<long double> >()); }
|
|
462
|
-
inline bool test_isMuchSmallerThan(const std::complex<long double>& a, const std::complex<long double>& b)
|
|
463
|
-
{ return internal::isMuchSmallerThan(a, b, test_precision<std::complex<long double> >()); }
|
|
464
|
-
#endif
|
|
465
|
-
#endif
|
|
466
|
-
|
|
467
|
-
#ifndef EIGEN_TEST_NO_LONGDOUBLE
|
|
468
|
-
inline bool test_isApprox(const long double& a, const long double& b)
|
|
469
|
-
{
|
|
470
|
-
bool ret = internal::isApprox(a, b, test_precision<long double>());
|
|
471
|
-
if (!ret) std::cerr
|
|
472
|
-
<< std::endl << " actual = " << a
|
|
473
|
-
<< std::endl << " expected = " << b << std::endl << std::endl;
|
|
474
|
-
return ret;
|
|
475
|
-
}
|
|
476
|
-
|
|
477
|
-
inline bool test_isMuchSmallerThan(const long double& a, const long double& b)
|
|
478
|
-
{ return internal::isMuchSmallerThan(a, b, test_precision<long double>()); }
|
|
479
|
-
inline bool test_isApproxOrLessThan(const long double& a, const long double& b)
|
|
480
|
-
{ return internal::isApproxOrLessThan(a, b, test_precision<long double>()); }
|
|
481
|
-
#endif // EIGEN_TEST_NO_LONGDOUBLE
|
|
482
|
-
|
|
483
|
-
// test_relative_error returns the relative difference between a and b as a real scalar as used in isApprox.
|
|
484
|
-
template<typename T1,typename T2>
|
|
485
|
-
typename NumTraits<typename T1::RealScalar>::NonInteger test_relative_error(const EigenBase<T1> &a, const EigenBase<T2> &b)
|
|
486
|
-
{
|
|
487
|
-
using std::sqrt;
|
|
488
|
-
typedef typename NumTraits<typename T1::RealScalar>::NonInteger RealScalar;
|
|
489
|
-
typename internal::nested_eval<T1,2>::type ea(a.derived());
|
|
490
|
-
typename internal::nested_eval<T2,2>::type eb(b.derived());
|
|
491
|
-
return sqrt(RealScalar((ea-eb).cwiseAbs2().sum()) / RealScalar((std::min)(eb.cwiseAbs2().sum(),ea.cwiseAbs2().sum())));
|
|
492
|
-
}
|
|
493
|
-
|
|
494
|
-
template<typename T1,typename T2>
|
|
495
|
-
typename T1::RealScalar test_relative_error(const T1 &a, const T2 &b, const typename T1::Coefficients* = 0)
|
|
496
|
-
{
|
|
497
|
-
return test_relative_error(a.coeffs(), b.coeffs());
|
|
498
|
-
}
|
|
499
|
-
|
|
500
|
-
template<typename T1,typename T2>
|
|
501
|
-
typename T1::Scalar test_relative_error(const T1 &a, const T2 &b, const typename T1::MatrixType* = 0)
|
|
502
|
-
{
|
|
503
|
-
return test_relative_error(a.matrix(), b.matrix());
|
|
504
|
-
}
|
|
505
|
-
|
|
506
|
-
template<typename S, int D>
|
|
507
|
-
S test_relative_error(const Translation<S,D> &a, const Translation<S,D> &b)
|
|
508
|
-
{
|
|
509
|
-
return test_relative_error(a.vector(), b.vector());
|
|
510
|
-
}
|
|
511
|
-
|
|
512
|
-
template <typename S, int D, int O>
|
|
513
|
-
S test_relative_error(const ParametrizedLine<S,D,O> &a, const ParametrizedLine<S,D,O> &b)
|
|
514
|
-
{
|
|
515
|
-
return (std::max)(test_relative_error(a.origin(), b.origin()), test_relative_error(a.origin(), b.origin()));
|
|
516
|
-
}
|
|
517
|
-
|
|
518
|
-
template <typename S, int D>
|
|
519
|
-
S test_relative_error(const AlignedBox<S,D> &a, const AlignedBox<S,D> &b)
|
|
520
|
-
{
|
|
521
|
-
return (std::max)(test_relative_error((a.min)(), (b.min)()), test_relative_error((a.max)(), (b.max)()));
|
|
522
|
-
}
|
|
523
|
-
|
|
524
|
-
template<typename Derived> class SparseMatrixBase;
|
|
525
|
-
template<typename T1,typename T2>
|
|
526
|
-
typename T1::RealScalar test_relative_error(const MatrixBase<T1> &a, const SparseMatrixBase<T2> &b)
|
|
527
|
-
{
|
|
528
|
-
return test_relative_error(a,b.toDense());
|
|
529
|
-
}
|
|
530
|
-
|
|
531
|
-
template<typename Derived> class SparseMatrixBase;
|
|
532
|
-
template<typename T1,typename T2>
|
|
533
|
-
typename T1::RealScalar test_relative_error(const SparseMatrixBase<T1> &a, const MatrixBase<T2> &b)
|
|
534
|
-
{
|
|
535
|
-
return test_relative_error(a.toDense(),b);
|
|
536
|
-
}
|
|
537
|
-
|
|
538
|
-
template<typename Derived> class SparseMatrixBase;
|
|
539
|
-
template<typename T1,typename T2>
|
|
540
|
-
typename T1::RealScalar test_relative_error(const SparseMatrixBase<T1> &a, const SparseMatrixBase<T2> &b)
|
|
541
|
-
{
|
|
542
|
-
return test_relative_error(a.toDense(),b.toDense());
|
|
543
|
-
}
|
|
544
|
-
|
|
545
|
-
template<typename T1,typename T2>
|
|
546
|
-
typename NumTraits<typename NumTraits<T1>::Real>::NonInteger test_relative_error(const T1 &a, const T2 &b, typename internal::enable_if<internal::is_arithmetic<typename NumTraits<T1>::Real>::value, T1>::type* = 0)
|
|
547
|
-
{
|
|
548
|
-
typedef typename NumTraits<typename NumTraits<T1>::Real>::NonInteger RealScalar;
|
|
549
|
-
return numext::sqrt(RealScalar(numext::abs2(a-b))/(numext::mini)(RealScalar(numext::abs2(a)),RealScalar(numext::abs2(b))));
|
|
550
|
-
}
|
|
551
|
-
|
|
552
|
-
template<typename T>
|
|
553
|
-
T test_relative_error(const Rotation2D<T> &a, const Rotation2D<T> &b)
|
|
554
|
-
{
|
|
555
|
-
return test_relative_error(a.angle(), b.angle());
|
|
556
|
-
}
|
|
557
|
-
|
|
558
|
-
template<typename T>
|
|
559
|
-
T test_relative_error(const AngleAxis<T> &a, const AngleAxis<T> &b)
|
|
560
|
-
{
|
|
561
|
-
return (std::max)(test_relative_error(a.angle(), b.angle()), test_relative_error(a.axis(), b.axis()));
|
|
562
|
-
}
|
|
563
|
-
|
|
564
|
-
template<typename Type1, typename Type2>
|
|
565
|
-
inline bool test_isApprox(const Type1& a, const Type2& b, typename Type1::Scalar* = 0) // Enabled for Eigen's type only
|
|
566
|
-
{
|
|
567
|
-
return a.isApprox(b, test_precision<typename Type1::Scalar>());
|
|
568
|
-
}
|
|
569
|
-
|
|
570
|
-
// get_test_precision is a small wrapper to test_precision allowing to return the scalar precision for either scalars or expressions
|
|
571
|
-
template<typename T>
|
|
572
|
-
typename NumTraits<typename T::Scalar>::Real get_test_precision(const T&, const typename T::Scalar* = 0)
|
|
573
|
-
{
|
|
574
|
-
return test_precision<typename NumTraits<typename T::Scalar>::Real>();
|
|
575
|
-
}
|
|
576
|
-
|
|
577
|
-
template<typename T>
|
|
578
|
-
typename NumTraits<T>::Real get_test_precision(const T&,typename internal::enable_if<internal::is_arithmetic<typename NumTraits<T>::Real>::value, T>::type* = 0)
|
|
579
|
-
{
|
|
580
|
-
return test_precision<typename NumTraits<T>::Real>();
|
|
581
|
-
}
|
|
582
|
-
|
|
583
|
-
// verifyIsApprox is a wrapper to test_isApprox that outputs the relative difference magnitude if the test fails.
|
|
584
|
-
template<typename Type1, typename Type2>
|
|
585
|
-
inline bool verifyIsApprox(const Type1& a, const Type2& b)
|
|
586
|
-
{
|
|
587
|
-
bool ret = test_isApprox(a,b);
|
|
588
|
-
if(!ret)
|
|
589
|
-
{
|
|
590
|
-
std::cerr << "Difference too large wrt tolerance " << get_test_precision(a) << ", relative error is: " << test_relative_error(a,b) << std::endl;
|
|
591
|
-
}
|
|
592
|
-
return ret;
|
|
593
|
-
}
|
|
594
|
-
|
|
595
|
-
// The idea behind this function is to compare the two scalars a and b where
|
|
596
|
-
// the scalar ref is a hint about the expected order of magnitude of a and b.
|
|
597
|
-
// WARNING: the scalar a and b must be positive
|
|
598
|
-
// Therefore, if for some reason a and b are very small compared to ref,
|
|
599
|
-
// we won't issue a false negative.
|
|
600
|
-
// This test could be: abs(a-b) <= eps * ref
|
|
601
|
-
// However, it seems that simply comparing a+ref and b+ref is more sensitive to true error.
|
|
602
|
-
template<typename Scalar,typename ScalarRef>
|
|
603
|
-
inline bool test_isApproxWithRef(const Scalar& a, const Scalar& b, const ScalarRef& ref)
|
|
604
|
-
{
|
|
605
|
-
return test_isApprox(a+ref, b+ref);
|
|
606
|
-
}
|
|
607
|
-
|
|
608
|
-
template<typename Derived1, typename Derived2>
|
|
609
|
-
inline bool test_isMuchSmallerThan(const MatrixBase<Derived1>& m1,
|
|
610
|
-
const MatrixBase<Derived2>& m2)
|
|
611
|
-
{
|
|
612
|
-
return m1.isMuchSmallerThan(m2, test_precision<typename internal::traits<Derived1>::Scalar>());
|
|
613
|
-
}
|
|
614
|
-
|
|
615
|
-
template<typename Derived>
|
|
616
|
-
inline bool test_isMuchSmallerThan(const MatrixBase<Derived>& m,
|
|
617
|
-
const typename NumTraits<typename internal::traits<Derived>::Scalar>::Real& s)
|
|
618
|
-
{
|
|
619
|
-
return m.isMuchSmallerThan(s, test_precision<typename internal::traits<Derived>::Scalar>());
|
|
620
|
-
}
|
|
621
|
-
|
|
622
|
-
template<typename Derived>
|
|
623
|
-
inline bool test_isUnitary(const MatrixBase<Derived>& m)
|
|
624
|
-
{
|
|
625
|
-
return m.isUnitary(test_precision<typename internal::traits<Derived>::Scalar>());
|
|
626
|
-
}
|
|
627
|
-
|
|
628
|
-
// Forward declaration to avoid ICC warning
|
|
629
|
-
template<typename T, typename U>
|
|
630
|
-
bool test_is_equal(const T& actual, const U& expected, bool expect_equal=true);
|
|
631
|
-
|
|
632
|
-
template<typename T, typename U>
|
|
633
|
-
bool test_is_equal(const T& actual, const U& expected, bool expect_equal)
|
|
634
|
-
{
|
|
635
|
-
if ((actual==expected) == expect_equal)
|
|
636
|
-
return true;
|
|
637
|
-
// false:
|
|
638
|
-
std::cerr
|
|
639
|
-
<< "\n actual = " << actual
|
|
640
|
-
<< "\n expected " << (expect_equal ? "= " : "!=") << expected << "\n\n";
|
|
641
|
-
return false;
|
|
642
|
-
}
|
|
643
|
-
|
|
644
|
-
/** Creates a random Partial Isometry matrix of given rank.
|
|
645
|
-
*
|
|
646
|
-
* A partial isometry is a matrix all of whose singular values are either 0 or 1.
|
|
647
|
-
* This is very useful to test rank-revealing algorithms.
|
|
648
|
-
*/
|
|
649
|
-
// Forward declaration to avoid ICC warning
|
|
650
|
-
template<typename MatrixType>
|
|
651
|
-
void createRandomPIMatrixOfRank(Index desired_rank, Index rows, Index cols, MatrixType& m);
|
|
652
|
-
template<typename MatrixType>
|
|
653
|
-
void createRandomPIMatrixOfRank(Index desired_rank, Index rows, Index cols, MatrixType& m)
|
|
654
|
-
{
|
|
655
|
-
typedef typename internal::traits<MatrixType>::Scalar Scalar;
|
|
656
|
-
enum { Rows = MatrixType::RowsAtCompileTime, Cols = MatrixType::ColsAtCompileTime };
|
|
657
|
-
|
|
658
|
-
typedef Matrix<Scalar, Dynamic, 1> VectorType;
|
|
659
|
-
typedef Matrix<Scalar, Rows, Rows> MatrixAType;
|
|
660
|
-
typedef Matrix<Scalar, Cols, Cols> MatrixBType;
|
|
661
|
-
|
|
662
|
-
if(desired_rank == 0)
|
|
663
|
-
{
|
|
664
|
-
m.setZero(rows,cols);
|
|
665
|
-
return;
|
|
666
|
-
}
|
|
667
|
-
|
|
668
|
-
if(desired_rank == 1)
|
|
669
|
-
{
|
|
670
|
-
// here we normalize the vectors to get a partial isometry
|
|
671
|
-
m = VectorType::Random(rows).normalized() * VectorType::Random(cols).normalized().transpose();
|
|
672
|
-
return;
|
|
673
|
-
}
|
|
674
|
-
|
|
675
|
-
MatrixAType a = MatrixAType::Random(rows,rows);
|
|
676
|
-
MatrixType d = MatrixType::Identity(rows,cols);
|
|
677
|
-
MatrixBType b = MatrixBType::Random(cols,cols);
|
|
678
|
-
|
|
679
|
-
// set the diagonal such that only desired_rank non-zero entries reamain
|
|
680
|
-
const Index diag_size = (std::min)(d.rows(),d.cols());
|
|
681
|
-
if(diag_size != desired_rank)
|
|
682
|
-
d.diagonal().segment(desired_rank, diag_size-desired_rank) = VectorType::Zero(diag_size-desired_rank);
|
|
683
|
-
|
|
684
|
-
HouseholderQR<MatrixAType> qra(a);
|
|
685
|
-
HouseholderQR<MatrixBType> qrb(b);
|
|
686
|
-
m = qra.householderQ() * d * qrb.householderQ();
|
|
687
|
-
}
|
|
688
|
-
|
|
689
|
-
// Forward declaration to avoid ICC warning
|
|
690
|
-
template<typename PermutationVectorType>
|
|
691
|
-
void randomPermutationVector(PermutationVectorType& v, Index size);
|
|
692
|
-
template<typename PermutationVectorType>
|
|
693
|
-
void randomPermutationVector(PermutationVectorType& v, Index size)
|
|
694
|
-
{
|
|
695
|
-
typedef typename PermutationVectorType::Scalar Scalar;
|
|
696
|
-
v.resize(size);
|
|
697
|
-
for(Index i = 0; i < size; ++i) v(i) = Scalar(i);
|
|
698
|
-
if(size == 1) return;
|
|
699
|
-
for(Index n = 0; n < 3 * size; ++n)
|
|
700
|
-
{
|
|
701
|
-
Index i = internal::random<Index>(0, size-1);
|
|
702
|
-
Index j;
|
|
703
|
-
do j = internal::random<Index>(0, size-1); while(j==i);
|
|
704
|
-
std::swap(v(i), v(j));
|
|
705
|
-
}
|
|
706
|
-
}
|
|
707
|
-
|
|
708
|
-
template<typename T> bool isNotNaN(const T& x)
|
|
709
|
-
{
|
|
710
|
-
return x==x;
|
|
711
|
-
}
|
|
712
|
-
|
|
713
|
-
template<typename T> bool isPlusInf(const T& x)
|
|
714
|
-
{
|
|
715
|
-
return x > NumTraits<T>::highest();
|
|
716
|
-
}
|
|
717
|
-
|
|
718
|
-
template<typename T> bool isMinusInf(const T& x)
|
|
719
|
-
{
|
|
720
|
-
return x < NumTraits<T>::lowest();
|
|
721
|
-
}
|
|
722
|
-
|
|
723
|
-
} // end namespace Eigen
|
|
724
|
-
|
|
725
|
-
template<typename T> struct GetDifferentType;
|
|
726
|
-
|
|
727
|
-
template<> struct GetDifferentType<float> { typedef double type; };
|
|
728
|
-
template<> struct GetDifferentType<double> { typedef float type; };
|
|
729
|
-
template<typename T> struct GetDifferentType<std::complex<T> >
|
|
730
|
-
{ typedef std::complex<typename GetDifferentType<T>::type> type; };
|
|
731
|
-
|
|
732
|
-
// Forward declaration to avoid ICC warning
|
|
733
|
-
template<typename T> std::string type_name();
|
|
734
|
-
template<typename T> std::string type_name() { return "other"; }
|
|
735
|
-
template<> std::string type_name<float>() { return "float"; }
|
|
736
|
-
template<> std::string type_name<double>() { return "double"; }
|
|
737
|
-
template<> std::string type_name<long double>() { return "long double"; }
|
|
738
|
-
template<> std::string type_name<int>() { return "int"; }
|
|
739
|
-
template<> std::string type_name<std::complex<float> >() { return "complex<float>"; }
|
|
740
|
-
template<> std::string type_name<std::complex<double> >() { return "complex<double>"; }
|
|
741
|
-
template<> std::string type_name<std::complex<long double> >() { return "complex<long double>"; }
|
|
742
|
-
template<> std::string type_name<std::complex<int> >() { return "complex<int>"; }
|
|
743
|
-
|
|
744
|
-
using namespace Eigen;
|
|
745
|
-
|
|
746
|
-
inline void set_repeat_from_string(const char *str)
|
|
747
|
-
{
|
|
748
|
-
errno = 0;
|
|
749
|
-
g_repeat = int(strtoul(str, 0, 10));
|
|
750
|
-
if(errno || g_repeat <= 0)
|
|
751
|
-
{
|
|
752
|
-
std::cout << "Invalid repeat value " << str << std::endl;
|
|
753
|
-
exit(EXIT_FAILURE);
|
|
754
|
-
}
|
|
755
|
-
g_has_set_repeat = true;
|
|
756
|
-
}
|
|
757
|
-
|
|
758
|
-
inline void set_seed_from_string(const char *str)
|
|
759
|
-
{
|
|
760
|
-
errno = 0;
|
|
761
|
-
g_seed = int(strtoul(str, 0, 10));
|
|
762
|
-
if(errno || g_seed == 0)
|
|
763
|
-
{
|
|
764
|
-
std::cout << "Invalid seed value " << str << std::endl;
|
|
765
|
-
exit(EXIT_FAILURE);
|
|
766
|
-
}
|
|
767
|
-
g_has_set_seed = true;
|
|
768
|
-
}
|
|
769
|
-
|
|
770
|
-
int main(int argc, char *argv[])
|
|
771
|
-
{
|
|
772
|
-
g_has_set_repeat = false;
|
|
773
|
-
g_has_set_seed = false;
|
|
774
|
-
bool need_help = false;
|
|
775
|
-
|
|
776
|
-
for(int i = 1; i < argc; i++)
|
|
777
|
-
{
|
|
778
|
-
if(argv[i][0] == 'r')
|
|
779
|
-
{
|
|
780
|
-
if(g_has_set_repeat)
|
|
781
|
-
{
|
|
782
|
-
std::cout << "Argument " << argv[i] << " conflicting with a former argument" << std::endl;
|
|
783
|
-
return 1;
|
|
784
|
-
}
|
|
785
|
-
set_repeat_from_string(argv[i]+1);
|
|
786
|
-
}
|
|
787
|
-
else if(argv[i][0] == 's')
|
|
788
|
-
{
|
|
789
|
-
if(g_has_set_seed)
|
|
790
|
-
{
|
|
791
|
-
std::cout << "Argument " << argv[i] << " conflicting with a former argument" << std::endl;
|
|
792
|
-
return 1;
|
|
793
|
-
}
|
|
794
|
-
set_seed_from_string(argv[i]+1);
|
|
795
|
-
}
|
|
796
|
-
else
|
|
797
|
-
{
|
|
798
|
-
need_help = true;
|
|
799
|
-
}
|
|
800
|
-
}
|
|
801
|
-
|
|
802
|
-
if(need_help)
|
|
803
|
-
{
|
|
804
|
-
std::cout << "This test application takes the following optional arguments:" << std::endl;
|
|
805
|
-
std::cout << " rN Repeat each test N times (default: " << DEFAULT_REPEAT << ")" << std::endl;
|
|
806
|
-
std::cout << " sN Use N as seed for random numbers (default: based on current time)" << std::endl;
|
|
807
|
-
std::cout << std::endl;
|
|
808
|
-
std::cout << "If defined, the environment variables EIGEN_REPEAT and EIGEN_SEED" << std::endl;
|
|
809
|
-
std::cout << "will be used as default values for these parameters." << std::endl;
|
|
810
|
-
return 1;
|
|
811
|
-
}
|
|
812
|
-
|
|
813
|
-
char *env_EIGEN_REPEAT = getenv("EIGEN_REPEAT");
|
|
814
|
-
if(!g_has_set_repeat && env_EIGEN_REPEAT)
|
|
815
|
-
set_repeat_from_string(env_EIGEN_REPEAT);
|
|
816
|
-
char *env_EIGEN_SEED = getenv("EIGEN_SEED");
|
|
817
|
-
if(!g_has_set_seed && env_EIGEN_SEED)
|
|
818
|
-
set_seed_from_string(env_EIGEN_SEED);
|
|
819
|
-
|
|
820
|
-
if(!g_has_set_seed) g_seed = (unsigned int) time(NULL);
|
|
821
|
-
if(!g_has_set_repeat) g_repeat = DEFAULT_REPEAT;
|
|
822
|
-
|
|
823
|
-
std::cout << "Initializing random number generator with seed " << g_seed << std::endl;
|
|
824
|
-
std::stringstream ss;
|
|
825
|
-
ss << "Seed: " << g_seed;
|
|
826
|
-
g_test_stack.push_back(ss.str());
|
|
827
|
-
srand(g_seed);
|
|
828
|
-
std::cout << "Repeating each test " << g_repeat << " times" << std::endl;
|
|
829
|
-
|
|
830
|
-
VERIFY(EigenTest::all().size()>0);
|
|
831
|
-
|
|
832
|
-
for(std::size_t i=0; i<EigenTest::all().size(); ++i)
|
|
833
|
-
{
|
|
834
|
-
const EigenTest& current_test = *EigenTest::all()[i];
|
|
835
|
-
Eigen::g_test_stack.push_back(current_test.name());
|
|
836
|
-
current_test();
|
|
837
|
-
Eigen::g_test_stack.pop_back();
|
|
838
|
-
}
|
|
839
|
-
|
|
840
|
-
return 0;
|
|
841
|
-
}
|
|
842
|
-
|
|
843
|
-
// These warning are disabled here such that they are still ON when parsing Eigen's header files.
|
|
844
|
-
#if defined __INTEL_COMPILER
|
|
845
|
-
// remark #383: value copied to temporary, reference to temporary used
|
|
846
|
-
// -> this warning is raised even for legal usage as: g_test_stack.push_back("foo"); where g_test_stack is a std::vector<std::string>
|
|
847
|
-
// remark #1418: external function definition with no prior declaration
|
|
848
|
-
// -> this warning is raised for all our test functions. Declaring them static would fix the issue.
|
|
849
|
-
// warning #279: controlling expression is constant
|
|
850
|
-
// remark #1572: floating-point equality and inequality comparisons are unreliable
|
|
851
|
-
#pragma warning disable 279 383 1418 1572
|
|
852
|
-
#endif
|
|
853
|
-
|
|
854
|
-
#ifdef _MSC_VER
|
|
855
|
-
// 4503 - decorated name length exceeded, name was truncated
|
|
856
|
-
#pragma warning( disable : 4503)
|
|
857
|
-
#endif
|