sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,465 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
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- // Copyright (C) 2014 Navdeep Jaitly <ndjaitly@google.com>
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- // Benoit Steiner <benoit.steiner.goog@gmail.com>
6
- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
9
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
-
11
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_REVERSE_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_REVERSE_H
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- namespace Eigen {
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-
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- /** \class TensorReverse
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- * \ingroup CXX11_Tensor_Module
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- *
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- * \brief Tensor reverse elements class.
19
- *
20
- */
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- namespace internal {
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- template<typename ReverseDimensions, typename XprType>
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- struct traits<TensorReverseOp<ReverseDimensions,
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- XprType> > : public traits<XprType>
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- {
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- typedef typename XprType::Scalar Scalar;
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- typedef traits<XprType> XprTraits;
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- typedef typename XprTraits::StorageKind StorageKind;
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- typedef typename XprTraits::Index Index;
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- typedef typename XprType::Nested Nested;
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- typedef typename remove_reference<Nested>::type _Nested;
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- static const int NumDimensions = XprTraits::NumDimensions;
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- static const int Layout = XprTraits::Layout;
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- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
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- template<typename ReverseDimensions, typename XprType>
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- struct eval<TensorReverseOp<ReverseDimensions, XprType>, Eigen::Dense>
39
- {
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- typedef const TensorReverseOp<ReverseDimensions, XprType>& type;
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- };
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-
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- template<typename ReverseDimensions, typename XprType>
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- struct nested<TensorReverseOp<ReverseDimensions, XprType>, 1,
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- typename eval<TensorReverseOp<ReverseDimensions, XprType> >::type>
46
- {
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- typedef TensorReverseOp<ReverseDimensions, XprType> type;
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- };
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-
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- } // end namespace internal
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-
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- template<typename ReverseDimensions, typename XprType>
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- class TensorReverseOp : public TensorBase<TensorReverseOp<ReverseDimensions,
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- XprType>, WriteAccessors>
55
- {
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- public:
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- typedef TensorBase<TensorReverseOp<ReverseDimensions, XprType>, WriteAccessors>Base;
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- typedef typename Eigen::internal::traits<TensorReverseOp>::Scalar Scalar;
59
- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
60
- typedef typename XprType::CoeffReturnType CoeffReturnType;
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- typedef typename Eigen::internal::nested<TensorReverseOp>::type Nested;
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- typedef typename Eigen::internal::traits<TensorReverseOp>::StorageKind
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- StorageKind;
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- typedef typename Eigen::internal::traits<TensorReverseOp>::Index Index;
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-
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorReverseOp(
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- const XprType& expr, const ReverseDimensions& reverse_dims)
68
- : m_xpr(expr), m_reverse_dims(reverse_dims) { }
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-
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- EIGEN_DEVICE_FUNC
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- const ReverseDimensions& reverse() const { return m_reverse_dims; }
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-
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- EIGEN_DEVICE_FUNC
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- const typename internal::remove_all<typename XprType::Nested>::type&
75
- expression() const { return m_xpr; }
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-
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- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorReverseOp)
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-
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-
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- protected:
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- typename XprType::Nested m_xpr;
82
- const ReverseDimensions m_reverse_dims;
83
- };
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-
85
- // Eval as rvalue
86
- template<typename ReverseDimensions, typename ArgType, typename Device>
87
- struct TensorEvaluator<const TensorReverseOp<ReverseDimensions, ArgType>, Device>
88
- {
89
- typedef TensorReverseOp<ReverseDimensions, ArgType> XprType;
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- typedef typename XprType::Index Index;
91
- static const int NumDims = internal::array_size<ReverseDimensions>::value;
92
- typedef DSizes<Index, NumDims> Dimensions;
93
- typedef typename XprType::Scalar Scalar;
94
- typedef typename XprType::CoeffReturnType CoeffReturnType;
95
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
96
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
97
- typedef StorageMemory<CoeffReturnType, Device> Storage;
98
- typedef typename Storage::Type EvaluatorPointerType;
99
-
100
- enum {
101
- IsAligned = false,
102
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
103
- BlockAccess = NumDims > 0,
104
- PreferBlockAccess = true,
105
- Layout = TensorEvaluator<ArgType, Device>::Layout,
106
- CoordAccess = false, // to be implemented
107
- RawAccess = false
108
- };
109
-
110
- typedef internal::TensorIntDivisor<Index> IndexDivisor;
111
-
112
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
113
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
114
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
115
-
116
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
117
- ArgTensorBlock;
118
-
119
- typedef typename internal::TensorMaterializedBlock<CoeffReturnType, NumDims,
120
- Layout, Index>
121
- TensorBlock;
122
- //===--------------------------------------------------------------------===//
123
-
124
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
125
- : m_impl(op.expression(), device),
126
- m_reverse(op.reverse()),
127
- m_device(device)
128
- {
129
- // Reversing a scalar isn't supported yet. It would be a no-op anyway.
130
- EIGEN_STATIC_ASSERT((NumDims > 0), YOU_MADE_A_PROGRAMMING_MISTAKE);
131
-
132
- // Compute strides
133
- m_dimensions = m_impl.dimensions();
134
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
135
- m_strides[0] = 1;
136
- for (int i = 1; i < NumDims; ++i) {
137
- m_strides[i] = m_strides[i-1] * m_dimensions[i-1];
138
- if (m_strides[i] > 0) m_fastStrides[i] = IndexDivisor(m_strides[i]);
139
- }
140
- } else {
141
- m_strides[NumDims-1] = 1;
142
- for (int i = NumDims - 2; i >= 0; --i) {
143
- m_strides[i] = m_strides[i+1] * m_dimensions[i+1];
144
- if (m_strides[i] > 0) m_fastStrides[i] = IndexDivisor(m_strides[i]);
145
- }
146
- }
147
- }
148
-
149
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
150
- const Dimensions& dimensions() const { return m_dimensions; }
151
-
152
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
153
- m_impl.evalSubExprsIfNeeded(NULL);
154
- return true;
155
- }
156
-
157
- #ifdef EIGEN_USE_THREADS
158
- template <typename EvalSubExprsCallback>
159
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
160
- EvaluatorPointerType, EvalSubExprsCallback done) {
161
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
162
- }
163
- #endif // EIGEN_USE_THREADS
164
-
165
- EIGEN_STRONG_INLINE void cleanup() {
166
- m_impl.cleanup();
167
- }
168
-
169
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index reverseIndex(
170
- Index index) const {
171
- eigen_assert(index < dimensions().TotalSize());
172
- Index inputIndex = 0;
173
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
174
- EIGEN_UNROLL_LOOP
175
- for (int i = NumDims - 1; i > 0; --i) {
176
- Index idx = index / m_fastStrides[i];
177
- index -= idx * m_strides[i];
178
- if (m_reverse[i]) {
179
- idx = m_dimensions[i] - idx - 1;
180
- }
181
- inputIndex += idx * m_strides[i] ;
182
- }
183
- if (m_reverse[0]) {
184
- inputIndex += (m_dimensions[0] - index - 1);
185
- } else {
186
- inputIndex += index;
187
- }
188
- } else {
189
- EIGEN_UNROLL_LOOP
190
- for (int i = 0; i < NumDims - 1; ++i) {
191
- Index idx = index / m_fastStrides[i];
192
- index -= idx * m_strides[i];
193
- if (m_reverse[i]) {
194
- idx = m_dimensions[i] - idx - 1;
195
- }
196
- inputIndex += idx * m_strides[i] ;
197
- }
198
- if (m_reverse[NumDims-1]) {
199
- inputIndex += (m_dimensions[NumDims-1] - index - 1);
200
- } else {
201
- inputIndex += index;
202
- }
203
- }
204
- return inputIndex;
205
- }
206
-
207
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(
208
- Index index) const {
209
- return m_impl.coeff(reverseIndex(index));
210
- }
211
-
212
- template<int LoadMode>
213
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
214
- PacketReturnType packet(Index index) const
215
- {
216
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
217
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
218
-
219
- // TODO(ndjaitly): write a better packing routine that uses
220
- // local structure.
221
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type
222
- values[PacketSize];
223
- EIGEN_UNROLL_LOOP
224
- for (int i = 0; i < PacketSize; ++i) {
225
- values[i] = coeff(index+i);
226
- }
227
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
228
- return rslt;
229
- }
230
-
231
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
232
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
233
- const size_t target_size = m_device.lastLevelCacheSize();
234
- // Block evaluation reads underlying memory in reverse order, and default
235
- // cost model does not properly catch this in bytes stored/loaded.
236
- return internal::TensorBlockResourceRequirements::skewed<Scalar>(
237
- target_size)
238
- .addCostPerCoeff({0, 0, 24});
239
- }
240
-
241
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
242
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
243
- bool /*root_of_expr_ast*/ = false) const {
244
- // TODO(ezhulenev): If underlying tensor expression supports and prefers
245
- // block evaluation we must use it. Currently we use coeff and packet
246
- // access into the underlying tensor expression.
247
- // static const bool useBlockAccessForArgType =
248
- // TensorEvaluator<ArgType, Device>::BlockAccess &&
249
- // TensorEvaluator<ArgType, Device>::PreferBlockAccess;
250
-
251
- static const bool isColMajor =
252
- static_cast<int>(Layout) == static_cast<int>(ColMajor);
253
-
254
- static const Index inner_dim_idx = isColMajor ? 0 : NumDims - 1;
255
- const bool inner_dim_reversed = m_reverse[inner_dim_idx];
256
-
257
- // Offset in the output block.
258
- Index block_offset = 0;
259
-
260
- // Offset in the input Tensor.
261
- Index input_offset = reverseIndex(desc.offset());
262
-
263
- // Initialize output block iterator state. Dimension in this array are
264
- // always in inner_most -> outer_most order (col major layout).
265
- array<BlockIteratorState, NumDims> it;
266
- for (int i = 0; i < NumDims; ++i) {
267
- const int dim = isColMajor ? i : NumDims - 1 - i;
268
- it[i].size = desc.dimension(dim);
269
- it[i].count = 0;
270
- it[i].reverse = m_reverse[dim];
271
-
272
- it[i].block_stride =
273
- i == 0 ? 1 : (it[i - 1].size * it[i - 1].block_stride);
274
- it[i].block_span = it[i].block_stride * (it[i].size - 1);
275
-
276
- it[i].input_stride = m_strides[dim];
277
- it[i].input_span = it[i].input_stride * (it[i].size - 1);
278
-
279
- if (it[i].reverse) {
280
- it[i].input_stride = -1 * it[i].input_stride;
281
- it[i].input_span = -1 * it[i].input_span;
282
- }
283
- }
284
-
285
- // If multiple inner dimensions have the same reverse flag, check if we can
286
- // merge them into a single virtual inner dimension.
287
- int effective_inner_dim = 0;
288
- for (int i = 1; i < NumDims; ++i) {
289
- if (it[i].reverse != it[effective_inner_dim].reverse) break;
290
- if (it[i].block_stride != it[effective_inner_dim].size) break;
291
- if (it[i].block_stride != numext::abs(it[i].input_stride)) break;
292
-
293
- it[i].size = it[effective_inner_dim].size * it[i].size;
294
-
295
- it[i].block_stride = 1;
296
- it[i].input_stride = (inner_dim_reversed ? -1 : 1);
297
-
298
- it[i].block_span = it[i].block_stride * (it[i].size - 1);
299
- it[i].input_span = it[i].input_stride * (it[i].size - 1);
300
-
301
- effective_inner_dim = i;
302
- }
303
-
304
- eigen_assert(it[effective_inner_dim].block_stride == 1);
305
- eigen_assert(it[effective_inner_dim].input_stride ==
306
- (inner_dim_reversed ? -1 : 1));
307
-
308
- const Index inner_dim_size = it[effective_inner_dim].size;
309
-
310
- // Prepare storage for the materialized reverse result.
311
- const typename TensorBlock::Storage block_storage =
312
- TensorBlock::prepareStorage(desc, scratch);
313
- CoeffReturnType* block_buffer = block_storage.data();
314
-
315
- while (it[NumDims - 1].count < it[NumDims - 1].size) {
316
- // Copy inner-most dimension data from reversed location in input.
317
- Index dst = block_offset;
318
- Index src = input_offset;
319
-
320
- // NOTE(ezhulenev): Adding vectorized path with internal::preverse showed
321
- // worse results in benchmarks than a simple coefficient loop.
322
- if (inner_dim_reversed) {
323
- for (Index i = 0; i < inner_dim_size; ++i) {
324
- block_buffer[dst] = m_impl.coeff(src);
325
- ++dst;
326
- --src;
327
- }
328
- } else {
329
- for (Index i = 0; i < inner_dim_size; ++i) {
330
- block_buffer[dst] = m_impl.coeff(src);
331
- ++dst;
332
- ++src;
333
- }
334
- }
335
-
336
- // For the 1d tensor we need to generate only one inner-most dimension.
337
- if ((NumDims - effective_inner_dim) == 1) break;
338
-
339
- // Update offset.
340
- for (Index i = effective_inner_dim + 1; i < NumDims; ++i) {
341
- if (++it[i].count < it[i].size) {
342
- block_offset += it[i].block_stride;
343
- input_offset += it[i].input_stride;
344
- break;
345
- }
346
- if (i != NumDims - 1) it[i].count = 0;
347
- block_offset -= it[i].block_span;
348
- input_offset -= it[i].input_span;
349
- }
350
- }
351
-
352
- return block_storage.AsTensorMaterializedBlock();
353
- }
354
-
355
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
356
- double compute_cost = NumDims * (2 * TensorOpCost::AddCost<Index>() +
357
- 2 * TensorOpCost::MulCost<Index>() +
358
- TensorOpCost::DivCost<Index>());
359
- for (int i = 0; i < NumDims; ++i) {
360
- if (m_reverse[i]) {
361
- compute_cost += 2 * TensorOpCost::AddCost<Index>();
362
- }
363
- }
364
- return m_impl.costPerCoeff(vectorized) +
365
- TensorOpCost(0, 0, compute_cost, false /* vectorized */, PacketSize);
366
- }
367
-
368
- EIGEN_DEVICE_FUNC typename Storage::Type data() const { return NULL; }
369
-
370
- #ifdef EIGEN_USE_SYCL
371
- // binding placeholder accessors to a command group handler for SYCL
372
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
373
- m_impl.bind(cgh);
374
- }
375
- #endif
376
-
377
- protected:
378
- Dimensions m_dimensions;
379
- array<Index, NumDims> m_strides;
380
- array<IndexDivisor, NumDims> m_fastStrides;
381
- TensorEvaluator<ArgType, Device> m_impl;
382
- ReverseDimensions m_reverse;
383
- const Device EIGEN_DEVICE_REF m_device;
384
-
385
- private:
386
- struct BlockIteratorState {
387
- BlockIteratorState()
388
- : size(0),
389
- count(0),
390
- reverse(false),
391
- block_stride(0),
392
- block_span(0),
393
- input_stride(0),
394
- input_span(0) {}
395
-
396
- Index size;
397
- Index count;
398
- bool reverse;
399
- Index block_stride;
400
- Index block_span;
401
- Index input_stride;
402
- Index input_span;
403
- };
404
- };
405
-
406
- // Eval as lvalue
407
-
408
- template <typename ReverseDimensions, typename ArgType, typename Device>
409
- struct TensorEvaluator<TensorReverseOp<ReverseDimensions, ArgType>, Device>
410
- : public TensorEvaluator<const TensorReverseOp<ReverseDimensions, ArgType>,
411
- Device> {
412
- typedef TensorEvaluator<const TensorReverseOp<ReverseDimensions, ArgType>,
413
- Device> Base;
414
- typedef TensorReverseOp<ReverseDimensions, ArgType> XprType;
415
- typedef typename XprType::Index Index;
416
- static const int NumDims = internal::array_size<ReverseDimensions>::value;
417
- typedef DSizes<Index, NumDims> Dimensions;
418
-
419
- enum {
420
- IsAligned = false,
421
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
422
- BlockAccess = false,
423
- PreferBlockAccess = false,
424
- Layout = TensorEvaluator<ArgType, Device>::Layout,
425
- CoordAccess = false, // to be implemented
426
- RawAccess = false
427
- };
428
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
429
- : Base(op, device) {}
430
-
431
- typedef typename XprType::Scalar Scalar;
432
- typedef typename XprType::CoeffReturnType CoeffReturnType;
433
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
434
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
435
-
436
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
437
- typedef internal::TensorBlockNotImplemented TensorBlock;
438
- //===--------------------------------------------------------------------===//
439
-
440
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
441
- const Dimensions& dimensions() const { return this->m_dimensions; }
442
-
443
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Scalar& coeffRef(Index index) {
444
- return this->m_impl.coeffRef(this->reverseIndex(index));
445
- }
446
-
447
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
448
- void writePacket(Index index, const PacketReturnType& x) {
449
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
450
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
451
-
452
- // This code is pilfered from TensorMorphing.h
453
- EIGEN_ALIGN_MAX CoeffReturnType values[PacketSize];
454
- internal::pstore<CoeffReturnType, PacketReturnType>(values, x);
455
- EIGEN_UNROLL_LOOP
456
- for (int i = 0; i < PacketSize; ++i) {
457
- this->coeffRef(index+i) = values[i];
458
- }
459
- }
460
- };
461
-
462
-
463
- } // end namespace Eigen
464
-
465
- #endif // EIGEN_CXX11_TENSOR_TENSOR_REVERSE_H