sequenzo 0.1.17__cp39-cp39-win_amd64.whl → 0.1.19__cp39-cp39-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +156 -156
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +156 -156
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +156 -156
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +156 -156
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +156 -156
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +156 -156
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,1093 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_CXX11_TENSOR_TENSOR_BROADCASTING_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_BROADCASTING_H
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-
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- namespace Eigen {
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-
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- /** \class TensorBroadcasting
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- * \ingroup CXX11_Tensor_Module
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- *
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- * \brief Tensor broadcasting class.
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- *
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- *
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- */
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- namespace internal {
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- template<typename Broadcast, typename XprType>
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- struct traits<TensorBroadcastingOp<Broadcast, XprType> > : public traits<XprType>
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- {
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- typedef typename XprType::Scalar Scalar;
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- typedef traits<XprType> XprTraits;
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- typedef typename XprTraits::StorageKind StorageKind;
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- typedef typename XprTraits::Index Index;
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- typedef typename XprType::Nested Nested;
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- typedef typename remove_reference<Nested>::type _Nested;
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- static const int NumDimensions = XprTraits::NumDimensions;
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- static const int Layout = XprTraits::Layout;
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- typedef typename XprTraits::PointerType PointerType;
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- };
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-
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- template<typename Broadcast, typename XprType>
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- struct eval<TensorBroadcastingOp<Broadcast, XprType>, Eigen::Dense>
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- {
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- typedef const TensorBroadcastingOp<Broadcast, XprType> EIGEN_DEVICE_REF type;
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- };
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-
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- template<typename Broadcast, typename XprType>
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- struct nested<TensorBroadcastingOp<Broadcast, XprType>, 1, typename eval<TensorBroadcastingOp<Broadcast, XprType> >::type>
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- {
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- typedef TensorBroadcastingOp<Broadcast, XprType> type;
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- };
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-
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- template <typename Dims>
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- struct is_input_scalar {
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- static const bool value = false;
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- };
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- template <>
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- struct is_input_scalar<Sizes<> > {
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- static const bool value = true;
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- };
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- #ifndef EIGEN_EMULATE_CXX11_META_H
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- template <typename std::ptrdiff_t... Indices>
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- struct is_input_scalar<Sizes<Indices...> > {
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- static const bool value = (Sizes<Indices...>::total_size == 1);
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- };
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- #endif
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-
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- } // end namespace internal
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-
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-
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-
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- template<typename Broadcast, typename XprType>
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- class TensorBroadcastingOp : public TensorBase<TensorBroadcastingOp<Broadcast, XprType>, ReadOnlyAccessors>
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- {
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- public:
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- typedef typename Eigen::internal::traits<TensorBroadcastingOp>::Scalar Scalar;
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- typedef typename Eigen::NumTraits<Scalar>::Real RealScalar;
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- typedef typename XprType::CoeffReturnType CoeffReturnType;
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- typedef typename Eigen::internal::nested<TensorBroadcastingOp>::type Nested;
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- typedef typename Eigen::internal::traits<TensorBroadcastingOp>::StorageKind StorageKind;
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- typedef typename Eigen::internal::traits<TensorBroadcastingOp>::Index Index;
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-
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- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBroadcastingOp(const XprType& expr, const Broadcast& broadcast)
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- : m_xpr(expr), m_broadcast(broadcast) {}
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-
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- EIGEN_DEVICE_FUNC
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- const Broadcast& broadcast() const { return m_broadcast; }
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-
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- EIGEN_DEVICE_FUNC
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- const typename internal::remove_all<typename XprType::Nested>::type&
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- expression() const { return m_xpr; }
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-
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- protected:
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- typename XprType::Nested m_xpr;
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- const Broadcast m_broadcast;
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- };
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-
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-
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- // Eval as rvalue
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- template<typename Broadcast, typename ArgType, typename Device>
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- struct TensorEvaluator<const TensorBroadcastingOp<Broadcast, ArgType>, Device>
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- {
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- typedef TensorBroadcastingOp<Broadcast, ArgType> XprType;
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- typedef typename XprType::Index Index;
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- static const int NumDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
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- typedef DSizes<Index, NumDims> Dimensions;
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- typedef typename XprType::Scalar Scalar;
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- typedef typename TensorEvaluator<ArgType, Device>::Dimensions InputDimensions;
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- typedef typename XprType::CoeffReturnType CoeffReturnType;
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- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
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- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
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- protected: // all the non-static fields must have the same access control, otherwise the TensorEvaluator wont be standard layout;
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- bool isCopy, nByOne, oneByN;
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- public:
111
- typedef StorageMemory<CoeffReturnType, Device> Storage;
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- typedef typename Storage::Type EvaluatorPointerType;
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-
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- enum {
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- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
116
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
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- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
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- PreferBlockAccess = true,
119
- Layout = TensorEvaluator<ArgType, Device>::Layout,
120
- RawAccess = false
121
- };
122
-
123
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
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-
125
- // We do block based broadcasting using a trick with 2x tensor rank and 0
126
- // strides. See block method implementation for details.
127
- typedef DSizes<Index, 2 * NumDims> BroadcastDimensions;
128
-
129
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
130
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
131
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
132
-
133
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
134
- ArgTensorBlock;
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-
136
- typedef typename internal::TensorMaterializedBlock<ScalarNoConst, NumDims,
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- Layout, Index>
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- TensorBlock;
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- //===--------------------------------------------------------------------===//
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-
141
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
142
- : isCopy(false), nByOne(false), oneByN(false),
143
- m_device(device), m_broadcast(op.broadcast()), m_impl(op.expression(), device)
144
- {
145
-
146
- // The broadcasting op doesn't change the rank of the tensor. One can't broadcast a scalar
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- // and store the result in a scalar. Instead one should reshape the scalar into a a N-D
148
- // tensor with N >= 1 of 1 element first and then broadcast.
149
- EIGEN_STATIC_ASSERT((NumDims > 0), YOU_MADE_A_PROGRAMMING_MISTAKE);
150
- const InputDimensions& input_dims = m_impl.dimensions();
151
- isCopy = true;
152
- for (int i = 0; i < NumDims; ++i) {
153
- eigen_assert(input_dims[i] > 0);
154
- m_dimensions[i] = input_dims[i] * m_broadcast[i];
155
- if (m_broadcast[i] != 1) {
156
- isCopy = false;
157
- }
158
- }
159
-
160
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
161
- m_inputStrides[0] = 1;
162
- m_outputStrides[0] = 1;
163
- for (int i = 1; i < NumDims; ++i) {
164
- m_inputStrides[i] = m_inputStrides[i-1] * input_dims[i-1];
165
- m_outputStrides[i] = m_outputStrides[i-1] * m_dimensions[i-1];
166
- }
167
- } else {
168
- m_inputStrides[NumDims-1] = 1;
169
- m_outputStrides[NumDims-1] = 1;
170
- for (int i = NumDims-2; i >= 0; --i) {
171
- m_inputStrides[i] = m_inputStrides[i+1] * input_dims[i+1];
172
- m_outputStrides[i] = m_outputStrides[i+1] * m_dimensions[i+1];
173
- }
174
- }
175
-
176
- if (input_dims[0] == 1) {
177
- oneByN = true;
178
- for (int i = 1; i < NumDims; ++i) {
179
- if (m_broadcast[i] != 1) {
180
- oneByN = false;
181
- break;
182
- }
183
- }
184
- } else if (input_dims[NumDims-1] == 1) {
185
- nByOne = true;
186
- for (int i = 0; i < NumDims-1; ++i) {
187
- if (m_broadcast[i] != 1) {
188
- nByOne = false;
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- break;
190
- }
191
- }
192
- }
193
-
194
- // Handle special format like NCHW, its input shape is '[1, N..., 1]' and
195
- // broadcast shape is '[N, 1..., N]'
196
- if (!oneByN && !nByOne) {
197
- if (input_dims[0] == 1 && input_dims[NumDims-1] == 1 && NumDims > 2) {
198
- nByOne = true;
199
- oneByN = true;
200
- for (int i = 1; i < NumDims-1; ++i) {
201
- if (m_broadcast[i] != 1) {
202
- nByOne = false;
203
- oneByN = false;
204
- break;
205
- }
206
- }
207
- }
208
- }
209
- }
210
-
211
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
212
-
213
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
214
- m_impl.evalSubExprsIfNeeded(NULL);
215
- return true;
216
- }
217
-
218
- #ifdef EIGEN_USE_THREADS
219
- template <typename EvalSubExprsCallback>
220
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
221
- EvaluatorPointerType, EvalSubExprsCallback done) {
222
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
223
- }
224
- #endif // EIGEN_USE_THREADS
225
-
226
- EIGEN_STRONG_INLINE void cleanup() {
227
- m_impl.cleanup();
228
- }
229
-
230
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE CoeffReturnType coeff(Index index) const
231
- {
232
- if (internal::is_input_scalar<typename internal::remove_all<InputDimensions>::type>::value) {
233
- return m_impl.coeff(0);
234
- }
235
-
236
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
237
- if (isCopy) {
238
- return m_impl.coeff(index);
239
- } else {
240
- return coeffColMajor(index);
241
- }
242
- } else {
243
- if (isCopy) {
244
- return m_impl.coeff(index);
245
- } else {
246
- return coeffRowMajor(index);
247
- }
248
- }
249
- }
250
-
251
- // TODO: attempt to speed this up. The integer divisions and modulo are slow
252
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index indexColMajor(Index index) const {
253
- Index inputIndex = 0;
254
- EIGEN_UNROLL_LOOP
255
- for (int i = NumDims - 1; i > 0; --i) {
256
- const Index idx = index / m_outputStrides[i];
257
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
258
- eigen_assert(idx < m_impl.dimensions()[i]);
259
- inputIndex += idx * m_inputStrides[i];
260
- } else {
261
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
262
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
263
- } else {
264
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
265
- }
266
- }
267
- index -= idx * m_outputStrides[i];
268
- }
269
- if (internal::index_statically_eq<Broadcast>(0, 1)) {
270
- eigen_assert(index < m_impl.dimensions()[0]);
271
- inputIndex += index;
272
- } else {
273
- if (internal::index_statically_eq<InputDimensions>(0, 1)) {
274
- eigen_assert(index % m_impl.dimensions()[0] == 0);
275
- } else {
276
- inputIndex += (index % m_impl.dimensions()[0]);
277
- }
278
- }
279
- return inputIndex;
280
- }
281
-
282
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeffColMajor(Index index) const
283
- {
284
- return m_impl.coeff(indexColMajor(index));
285
- }
286
-
287
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index indexRowMajor(Index index) const {
288
- Index inputIndex = 0;
289
- EIGEN_UNROLL_LOOP
290
- for (int i = 0; i < NumDims - 1; ++i) {
291
- const Index idx = index / m_outputStrides[i];
292
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
293
- eigen_assert(idx < m_impl.dimensions()[i]);
294
- inputIndex += idx * m_inputStrides[i];
295
- } else {
296
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
297
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
298
- } else {
299
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
300
- }
301
- }
302
- index -= idx * m_outputStrides[i];
303
- }
304
- if (internal::index_statically_eq<Broadcast>(NumDims - 1, 1)) {
305
- eigen_assert(index < m_impl.dimensions()[NumDims - 1]);
306
- inputIndex += index;
307
- } else {
308
- if (internal::index_statically_eq<InputDimensions>(NumDims - 1, 1)) {
309
- eigen_assert(index % m_impl.dimensions()[NumDims - 1] == 0);
310
- } else {
311
- inputIndex += (index % m_impl.dimensions()[NumDims - 1]);
312
- }
313
- }
314
- return inputIndex;
315
- }
316
-
317
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeffRowMajor(Index index) const
318
- {
319
- return m_impl.coeff(indexRowMajor(index));
320
- }
321
-
322
- template<int LoadMode>
323
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketReturnType packet(Index index) const
324
- {
325
- if (internal::is_input_scalar<typename internal::remove_all<InputDimensions>::type>::value) {
326
- return internal::pset1<PacketReturnType>(m_impl.coeff(0));
327
- }
328
-
329
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
330
- if (isCopy) {
331
- #ifdef EIGEN_GPU_COMPILE_PHASE
332
- // See PR 437: on NVIDIA P100 and K20m we observed a x3-4 speed up by enforcing
333
- // unaligned loads here. The reason is unclear though.
334
- return m_impl.template packet<Unaligned>(index);
335
- #else
336
- return m_impl.template packet<LoadMode>(index);
337
- #endif
338
- } else if (oneByN && !nByOne) {
339
- return packetNByOne<LoadMode>(index);
340
- } else if (!oneByN && nByOne) {
341
- return packetOneByN<LoadMode>(index);
342
- } else if (oneByN && nByOne) {
343
- return packetOneByNByOne<LoadMode>(index);
344
- } else {
345
- return packetColMajor<LoadMode>(index);
346
- }
347
- } else {
348
- if (isCopy) {
349
- #ifdef EIGEN_GPU_COMPILE_PHASE
350
- // See above.
351
- return m_impl.template packet<Unaligned>(index);
352
- #else
353
- return m_impl.template packet<LoadMode>(index);
354
- #endif
355
- } else if (oneByN && !nByOne) {
356
- return packetOneByN<LoadMode>(index);
357
- } else if (!oneByN && nByOne) {
358
- return packetNByOne<LoadMode>(index);
359
- } else if (oneByN && nByOne) {
360
- return packetOneByNByOne<LoadMode>(index);
361
- } else {
362
- return packetRowMajor<LoadMode>(index);
363
- }
364
- }
365
- }
366
-
367
- template<int LoadMode>
368
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetOneByNByOne
369
- (Index index) const
370
- {
371
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
372
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
373
-
374
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
375
- Index startDim, endDim;
376
- Index inputIndex, outputOffset, batchedIndex;
377
-
378
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
379
- startDim = NumDims - 1;
380
- endDim = 1;
381
- } else {
382
- startDim = 0;
383
- endDim = NumDims - 2;
384
- }
385
-
386
- batchedIndex = index % m_outputStrides[startDim];
387
- inputIndex = batchedIndex / m_outputStrides[endDim];
388
- outputOffset = batchedIndex % m_outputStrides[endDim];
389
-
390
- if (outputOffset + PacketSize <= m_outputStrides[endDim]) {
391
- values[0] = m_impl.coeff(inputIndex);
392
- return internal::pload1<PacketReturnType>(values);
393
- } else {
394
- EIGEN_UNROLL_LOOP
395
- for (int i = 0, cur = 0; i < PacketSize; ++i, ++cur) {
396
- if (outputOffset + cur < m_outputStrides[endDim]) {
397
- values[i] = m_impl.coeff(inputIndex);
398
- } else {
399
- ++inputIndex;
400
- inputIndex = (inputIndex == m_inputStrides[startDim] ? 0 : inputIndex);
401
- values[i] = m_impl.coeff(inputIndex);
402
- outputOffset = 0;
403
- cur = 0;
404
- }
405
- }
406
- return internal::pload<PacketReturnType>(values);
407
- }
408
- }
409
-
410
- template<int LoadMode>
411
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetOneByN(Index index) const
412
- {
413
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
414
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
415
-
416
- Index dim, inputIndex;
417
-
418
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
419
- dim = NumDims - 1;
420
- } else {
421
- dim = 0;
422
- }
423
-
424
- inputIndex = index % m_inputStrides[dim];
425
- if (inputIndex + PacketSize <= m_inputStrides[dim]) {
426
- return m_impl.template packet<Unaligned>(inputIndex);
427
- } else {
428
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
429
- EIGEN_UNROLL_LOOP
430
- for (int i = 0; i < PacketSize; ++i) {
431
- if (inputIndex > m_inputStrides[dim]-1) {
432
- inputIndex = 0;
433
- }
434
- values[i] = m_impl.coeff(inputIndex++);
435
- }
436
- return internal::pload<PacketReturnType>(values);
437
- }
438
- }
439
-
440
- template<int LoadMode>
441
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetNByOne(Index index) const
442
- {
443
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
444
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
445
-
446
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
447
- Index dim, inputIndex, outputOffset;
448
-
449
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
450
- dim = 1;
451
- } else {
452
- dim = NumDims - 2;
453
- }
454
-
455
- inputIndex = index / m_outputStrides[dim];
456
- outputOffset = index % m_outputStrides[dim];
457
- if (outputOffset + PacketSize <= m_outputStrides[dim]) {
458
- values[0] = m_impl.coeff(inputIndex);
459
- return internal::pload1<PacketReturnType>(values);
460
- } else {
461
- EIGEN_UNROLL_LOOP
462
- for (int i = 0, cur = 0; i < PacketSize; ++i, ++cur) {
463
- if (outputOffset + cur < m_outputStrides[dim]) {
464
- values[i] = m_impl.coeff(inputIndex);
465
- } else {
466
- values[i] = m_impl.coeff(++inputIndex);
467
- outputOffset = 0;
468
- cur = 0;
469
- }
470
- }
471
- return internal::pload<PacketReturnType>(values);
472
- }
473
- }
474
-
475
- // Ignore the LoadMode and always use unaligned loads since we can't guarantee
476
- // the alignment at compile time.
477
- template<int LoadMode>
478
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetColMajor(Index index) const
479
- {
480
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
481
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
482
-
483
- const Index originalIndex = index;
484
-
485
- Index inputIndex = 0;
486
- EIGEN_UNROLL_LOOP
487
- for (int i = NumDims - 1; i > 0; --i) {
488
- const Index idx = index / m_outputStrides[i];
489
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
490
- eigen_assert(idx < m_impl.dimensions()[i]);
491
- inputIndex += idx * m_inputStrides[i];
492
- } else {
493
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
494
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
495
- } else {
496
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
497
- }
498
- }
499
- index -= idx * m_outputStrides[i];
500
- }
501
- Index innermostLoc;
502
- if (internal::index_statically_eq<Broadcast>(0, 1)) {
503
- eigen_assert(index < m_impl.dimensions()[0]);
504
- innermostLoc = index;
505
- } else {
506
- if (internal::index_statically_eq<InputDimensions>(0, 1)) {
507
- eigen_assert(index % m_impl.dimensions()[0] == 0);
508
- innermostLoc = 0;
509
- } else {
510
- innermostLoc = index % m_impl.dimensions()[0];
511
- }
512
- }
513
- inputIndex += innermostLoc;
514
-
515
- // Todo: this could be extended to the second dimension if we're not
516
- // broadcasting alongside the first dimension, and so on.
517
- if (innermostLoc + PacketSize <= m_impl.dimensions()[0]) {
518
- return m_impl.template packet<Unaligned>(inputIndex);
519
- } else {
520
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
521
- values[0] = m_impl.coeff(inputIndex);
522
- EIGEN_UNROLL_LOOP
523
- for (int i = 1; i < PacketSize; ++i) {
524
- if (innermostLoc + i < m_impl.dimensions()[0]) {
525
- values[i] = m_impl.coeff(inputIndex+i);
526
- } else {
527
- values[i] = coeffColMajor(originalIndex+i);
528
- }
529
- }
530
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
531
- return rslt;
532
- }
533
- }
534
-
535
- template<int LoadMode>
536
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packetRowMajor(Index index) const
537
- {
538
- EIGEN_STATIC_ASSERT((PacketSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
539
- eigen_assert(index+PacketSize-1 < dimensions().TotalSize());
540
-
541
- const Index originalIndex = index;
542
-
543
- Index inputIndex = 0;
544
- EIGEN_UNROLL_LOOP
545
- for (int i = 0; i < NumDims - 1; ++i) {
546
- const Index idx = index / m_outputStrides[i];
547
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
548
- eigen_assert(idx < m_impl.dimensions()[i]);
549
- inputIndex += idx * m_inputStrides[i];
550
- } else {
551
- if (internal::index_statically_eq<InputDimensions>(i, 1)) {
552
- eigen_assert(idx % m_impl.dimensions()[i] == 0);
553
- } else {
554
- inputIndex += (idx % m_impl.dimensions()[i]) * m_inputStrides[i];
555
- }
556
- }
557
- index -= idx * m_outputStrides[i];
558
- }
559
- Index innermostLoc;
560
- if (internal::index_statically_eq<Broadcast>(NumDims-1, 1)) {
561
- eigen_assert(index < m_impl.dimensions()[NumDims-1]);
562
- innermostLoc = index;
563
- } else {
564
- if (internal::index_statically_eq<InputDimensions>(NumDims-1, 1)) {
565
- eigen_assert(index % m_impl.dimensions()[NumDims-1] == 0);
566
- innermostLoc = 0;
567
- } else {
568
- innermostLoc = index % m_impl.dimensions()[NumDims-1];
569
- }
570
- }
571
- inputIndex += innermostLoc;
572
-
573
- // Todo: this could be extended to the second dimension if we're not
574
- // broadcasting alongside the first dimension, and so on.
575
- if (innermostLoc + PacketSize <= m_impl.dimensions()[NumDims-1]) {
576
- return m_impl.template packet<Unaligned>(inputIndex);
577
- } else {
578
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[PacketSize];
579
- values[0] = m_impl.coeff(inputIndex);
580
- EIGEN_UNROLL_LOOP
581
- for (int i = 1; i < PacketSize; ++i) {
582
- if (innermostLoc + i < m_impl.dimensions()[NumDims-1]) {
583
- values[i] = m_impl.coeff(inputIndex+i);
584
- } else {
585
- values[i] = coeffRowMajor(originalIndex+i);
586
- }
587
- }
588
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
589
- return rslt;
590
- }
591
- }
592
-
593
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
594
- costPerCoeff(bool vectorized) const {
595
- double compute_cost = TensorOpCost::AddCost<Index>();
596
- if (!isCopy && NumDims > 0) {
597
- EIGEN_UNROLL_LOOP
598
- for (int i = NumDims - 1; i > 0; --i) {
599
- compute_cost += TensorOpCost::DivCost<Index>();
600
- if (internal::index_statically_eq<Broadcast>(i, 1)) {
601
- compute_cost +=
602
- TensorOpCost::MulCost<Index>() + TensorOpCost::AddCost<Index>();
603
- } else {
604
- if (!internal::index_statically_eq<InputDimensions>(i, 1)) {
605
- compute_cost += TensorOpCost::MulCost<Index>() +
606
- TensorOpCost::ModCost<Index>() +
607
- TensorOpCost::AddCost<Index>();
608
- }
609
- }
610
- compute_cost +=
611
- TensorOpCost::MulCost<Index>() + TensorOpCost::AddCost<Index>();
612
- }
613
- }
614
- return m_impl.costPerCoeff(vectorized) +
615
- TensorOpCost(0, 0, compute_cost, vectorized, PacketSize);
616
- }
617
-
618
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
619
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
620
- // TODO(wuke): Targeting L1 size is 30% faster than targeting L{-1} on large
621
- // tensors. But this might need further tuning.
622
- const size_t target_size = m_device.firstLevelCacheSize();
623
- return internal::TensorBlockResourceRequirements::merge(
624
- m_impl.getResourceRequirements(),
625
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size));
626
- }
627
-
628
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
629
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
630
- bool /*root_of_expr_ast*/ = false) const {
631
- BlockBroadcastingParams params = blockBroadcastingParams(desc);
632
-
633
- if (params.inner_dim_size == 0 || params.bcast_dim_size == 0) {
634
- return emptyBlock();
635
- }
636
-
637
- // Prepare storage for the materialized broadcasting result.
638
- const typename TensorBlock::Storage block_storage =
639
- TensorBlock::prepareStorage(desc, scratch);
640
- ScalarNoConst* materialized_output = block_storage.data();
641
-
642
- // We potentially will need to materialize input blocks.
643
- size_t materialized_input_size = 0;
644
- ScalarNoConst* materialized_input = NULL;
645
-
646
- // Initialize block broadcating iterator state for outer dimensions (outer
647
- // with regard to bcast dimension). Dimension in this array are always in
648
- // inner_most -> outer_most order (col major layout).
649
- array<BlockBroadcastingIteratorState, NumDims> it;
650
- int idx = 0;
651
-
652
- for (int i = params.inner_dim_count + 1; i < NumDims; ++i) {
653
- const Index dim = IsColMajor ? i : NumDims - 1 - i;
654
- it[idx].size = params.output_dims[dim];
655
- it[idx].count = 0;
656
- it[idx].output_stride = m_outputStrides[dim];
657
- it[idx].output_span = it[idx].output_stride * (it[idx].size - 1);
658
- idx++;
659
- }
660
-
661
- // Write output into the beginning of `materialized_output`.
662
- Index output_offset = 0;
663
-
664
- // We will fill output block by broadcasting along the bcast dim, and
665
- // iterating over outer dimension.
666
- const Index output_size = NumDims == 0 ? 1 : params.output_dims.TotalSize();
667
-
668
- for (Index num_output_coeffs = 0; num_output_coeffs < output_size;) {
669
- ScalarNoConst* bcast_output = materialized_output + num_output_coeffs;
670
- Index bcast_offset = desc.offset() + output_offset;
671
-
672
- // Broadcast along the bcast dimension.
673
- num_output_coeffs += BroadcastBlockAlongBcastDim(
674
- params, bcast_offset, scratch, bcast_output, &materialized_input,
675
- &materialized_input_size);
676
-
677
- // Switch to the next outer dimension.
678
- for (int j = 0; j < idx; ++j) {
679
- if (++it[j].count < it[j].size) {
680
- output_offset += it[j].output_stride;
681
- break;
682
- }
683
- it[j].count = 0;
684
- output_offset -= it[j].output_span;
685
- }
686
- }
687
-
688
- return block_storage.AsTensorMaterializedBlock();
689
- }
690
-
691
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return NULL; }
692
-
693
- const TensorEvaluator<ArgType, Device>& impl() const { return m_impl; }
694
-
695
- Broadcast functor() const { return m_broadcast; }
696
- #ifdef EIGEN_USE_SYCL
697
- // binding placeholder accessors to a command group handler for SYCL
698
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(
699
- cl::sycl::handler& cgh) const {
700
- m_impl.bind(cgh);
701
- }
702
- #endif
703
- private:
704
- static const bool IsColMajor =
705
- static_cast<int>(Layout) == static_cast<int>(ColMajor);
706
-
707
- // We will build a general case block broadcasting on top of broadcasting
708
- // primitive that will do broadcasting only for the inner dimension(s) along
709
- // the first dimension smaller than the input size (it's called `bcast_dim`).
710
- //
711
- // Example:
712
- // dim: 0 1 2 (ColMajor)
713
- // input size: [9, 3, 6]
714
- // block size: [9, 2, 6]
715
- //
716
- // We will compute broadcasted block by iterating over the outer dimensions
717
- // before `bcast_dim` (only dimension `2` in this example) and computing
718
- // broadcasts along the `bcast_dim` (dimension `1` in this example).
719
-
720
- // BlockBroadcastingParams holds precomputed parameters for broadcasting a
721
- // single block along the broadcasting dimension. Sizes and strides along the
722
- // `bcast_dim` might be invalid, they will be adjusted later in
723
- // `BroadcastBlockAlongBcastDim`.
724
- struct BlockBroadcastingParams {
725
- Dimensions input_dims; // input expression dimensions
726
- Dimensions output_dims; // output block sizes
727
- Dimensions output_strides; // output block strides
728
-
729
- int inner_dim_count; // count inner dimensions matching in size
730
- int bcast_dim; // broadcasting dimension index
731
- Index bcast_dim_size; // broadcasting dimension size
732
- Index inner_dim_size; // inner dimensions size
733
-
734
- // Block sizes and strides for the input block where all dimensions before
735
- // `bcast_dim` are equal to `1`.
736
- Dimensions input_block_sizes;
737
- Dimensions input_block_strides;
738
-
739
- // Block sizes and strides for blocks with extra dimensions and strides `0`.
740
- BroadcastDimensions bcast_block_sizes;
741
- BroadcastDimensions bcast_block_strides;
742
- BroadcastDimensions bcast_input_strides;
743
- };
744
-
745
- struct BlockBroadcastingIteratorState {
746
- Index size;
747
- Index count;
748
- Index output_stride;
749
- Index output_span;
750
- };
751
-
752
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE BlockBroadcastingParams
753
- blockBroadcastingParams(TensorBlockDesc& desc) const {
754
- BlockBroadcastingParams params;
755
-
756
- params.input_dims = Dimensions(m_impl.dimensions());
757
-
758
- // Output block sizes and strides.
759
- params.output_dims = desc.dimensions();
760
- params.output_strides = internal::strides<Layout>(params.output_dims);
761
-
762
- // Find the broadcasting dimension (first dimension with output size smaller
763
- // that the input size).
764
- params.bcast_dim = 0;
765
- params.bcast_dim_size = 1;
766
- params.inner_dim_size = 1;
767
-
768
- // Count the number of inner dimensions that have the same size in the block
769
- // and in the broadcast expression.
770
- params.inner_dim_count = 0;
771
-
772
- for (int i = 0; i < NumDims; ++i) {
773
- const int dim = IsColMajor ? i : NumDims - i - 1;
774
-
775
- if (params.output_dims[dim] == m_dimensions[dim]) {
776
- params.inner_dim_size *= params.output_dims[dim];
777
- ++params.inner_dim_count;
778
- continue;
779
- }
780
-
781
- // First non-matching dimension is the broadcasting dimension.
782
- eigen_assert(params.output_dims[dim] < m_dimensions[dim]);
783
- params.bcast_dim = dim;
784
- params.bcast_dim_size = params.output_dims[dim];
785
- break;
786
- }
787
-
788
- // Calculate the input block size for looking into the input.
789
- for (int i = 0; i < params.inner_dim_count; ++i) {
790
- const int dim = IsColMajor ? i : NumDims - i - 1;
791
- params.input_block_sizes[dim] = params.input_dims[dim];
792
- }
793
- for (int i = params.inner_dim_count; i < NumDims; ++i) {
794
- const int dim = IsColMajor ? i : NumDims - i - 1;
795
- params.input_block_sizes[dim] = 1;
796
- }
797
- params.input_block_strides =
798
- internal::strides<Layout>(params.input_block_sizes);
799
-
800
- // Broadcast with the 0-stride trick: Create 1 extra dim for each
801
- // broadcast, set the input stride to 0.
802
- //
803
- // When ColMajor:
804
- //
805
- // - bcast_block_sizes:
806
- // [d_0, b_0, d_1, b_1, ...]
807
- //
808
- // - bcast_block_strides:
809
- // [output_block_strides[0], output_block_strides[0] * d_0,
810
- // output_block_strides[1], output_block_strides[1] * d_1,
811
- // ...]
812
- //
813
- // - bcast_input_strides:
814
- // [input_block_strides[0], 0,
815
- // input_block_strides[1], 0,
816
- // ...].
817
- //
818
- for (int i = 0; i < params.inner_dim_count; ++i) {
819
- const int dim = IsColMajor ? i : NumDims - i - 1;
820
-
821
- const int copy_dim = IsColMajor ? 2 * i : 2 * NumDims - 2 * i - 1;
822
- const int broadcast_dim = IsColMajor ? copy_dim + 1 : copy_dim - 1;
823
-
824
- params.bcast_block_sizes[copy_dim] = params.input_dims[dim];
825
- params.bcast_block_sizes[broadcast_dim] = m_broadcast[dim];
826
- params.bcast_block_strides[copy_dim] = params.output_strides[dim];
827
- params.bcast_block_strides[broadcast_dim] =
828
- params.output_strides[dim] * params.input_dims[dim];
829
- params.bcast_input_strides[copy_dim] = params.input_block_strides[dim];
830
- params.bcast_input_strides[broadcast_dim] = 0;
831
- }
832
-
833
- for (int i = 2 * params.inner_dim_count; i < 2 * NumDims; ++i) {
834
- const int dim = IsColMajor ? i : 2 * NumDims - i - 1;
835
- params.bcast_block_sizes[dim] = 1;
836
- params.bcast_block_strides[dim] = 0;
837
- params.bcast_input_strides[dim] = 0;
838
- }
839
-
840
- return params;
841
- }
842
-
843
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock emptyBlock() const {
844
- DSizes<Index, NumDims> dimensions;
845
- for (int i = 0; i < NumDims; ++i) dimensions[i] = 0;
846
- return TensorBlock(internal::TensorBlockKind::kView, NULL, dimensions);
847
- }
848
-
849
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index BroadcastBlockAlongBcastDim(
850
- BlockBroadcastingParams params, Index bcast_offset,
851
- TensorBlockScratch& scratch, ScalarNoConst* materialized_output,
852
- ScalarNoConst** materialized_input,
853
- size_t* materialized_input_size) const {
854
- if (params.bcast_dim_size == 1) {
855
- // We just need one block read using the ready-set values above.
856
- return BroadcastBlock(
857
- params.input_block_sizes, params.input_block_strides,
858
- params.bcast_block_sizes, params.bcast_block_strides,
859
- params.bcast_input_strides, bcast_offset, 0, scratch,
860
- materialized_output, materialized_input, materialized_input_size);
861
-
862
- } else if (params.input_dims[params.bcast_dim] == 1) {
863
- // Broadcast bcast dimension (< NumDims) by bcast_dim_size.
864
- const int broadcast_bcast_dim =
865
- IsColMajor ? 2 * params.inner_dim_count + 1
866
- : 2 * NumDims - 2 * params.inner_dim_count - 2;
867
-
868
- params.bcast_block_sizes[broadcast_bcast_dim] = params.bcast_dim_size;
869
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
870
- params.bcast_block_strides[broadcast_bcast_dim] =
871
- params.output_strides[params.bcast_dim];
872
-
873
- return BroadcastBlock(
874
- params.input_block_sizes, params.input_block_strides,
875
- params.bcast_block_sizes, params.bcast_block_strides,
876
- params.bcast_input_strides, bcast_offset, 0, scratch,
877
- materialized_output, materialized_input, materialized_input_size);
878
-
879
- } else {
880
- // Keep track of the total number of the coefficients written to the
881
- // output block.
882
- Index num_output_coeffs = 0;
883
-
884
- // The general case. Let's denote the output block as
885
- //
886
- // x[..., a:a+bcast_dim_size, :, ..., :]
887
- //
888
- // where a:a+bcast_dim_size is a slice on the bcast_dim dimension
889
- // (< NumDims). We need to split the a:a+bcast_dim_size into possibly 3
890
- // sub-blocks:
891
- //
892
- // (1) a:b, where b is the smallest multiple of
893
- // input_dims[bcast_dim_start] in [a, a+bcast_dim_size].
894
- //
895
- // (2) b:c, where c is the largest multiple of input_dims[bcast_dim_start]
896
- // in [a, a+bcast_dim_size].
897
- //
898
- // (3) c:a+bcast_dim_size .
899
- //
900
- // Or, when b and c do not exist, we just need to process the whole block
901
- // together.
902
-
903
- // Find a.
904
- const Index bcast_dim_left_index =
905
- bcast_offset / m_outputStrides[params.bcast_dim];
906
-
907
- // Find b and c.
908
- const Index input_bcast_dim_size = params.input_dims[params.bcast_dim];
909
-
910
- // First multiple after a. This is b when <= bcast_dim_left_index +
911
- // bcast_dim_size.
912
- const Index first_multiple =
913
- divup<Index>(bcast_dim_left_index, input_bcast_dim_size) *
914
- input_bcast_dim_size;
915
-
916
- if (first_multiple <= bcast_dim_left_index + params.bcast_dim_size) {
917
- // b exists, so does c. Find it.
918
- const Index last_multiple =
919
- (bcast_dim_left_index + params.bcast_dim_size) /
920
- input_bcast_dim_size * input_bcast_dim_size;
921
- const int copy_bcast_dim =
922
- IsColMajor ? 2 * params.inner_dim_count
923
- : 2 * NumDims - 2 * params.inner_dim_count - 1;
924
- const int broadcast_bcast_dim =
925
- IsColMajor ? 2 * params.inner_dim_count + 1
926
- : 2 * NumDims - 2 * params.inner_dim_count - 2;
927
-
928
- if (first_multiple > bcast_dim_left_index) {
929
- const Index head_size = first_multiple - bcast_dim_left_index;
930
- params.input_block_sizes[params.bcast_dim] = head_size;
931
- params.bcast_block_sizes[copy_bcast_dim] = head_size;
932
- params.bcast_input_strides[copy_bcast_dim] =
933
- params.input_block_strides[params.bcast_dim];
934
- params.bcast_block_strides[copy_bcast_dim] =
935
- params.output_strides[params.bcast_dim];
936
- params.bcast_block_sizes[broadcast_bcast_dim] = 1;
937
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
938
- params.bcast_block_strides[broadcast_bcast_dim] =
939
- params.output_strides[params.bcast_dim] *
940
- params.input_dims[params.bcast_dim];
941
-
942
- num_output_coeffs += BroadcastBlock(
943
- params.input_block_sizes, params.input_block_strides,
944
- params.bcast_block_sizes, params.bcast_block_strides,
945
- params.bcast_input_strides, bcast_offset, 0, scratch,
946
- materialized_output, materialized_input, materialized_input_size);
947
- }
948
- if (first_multiple < last_multiple) {
949
- params.input_block_sizes[params.bcast_dim] = input_bcast_dim_size;
950
- params.bcast_block_sizes[copy_bcast_dim] = input_bcast_dim_size;
951
- params.bcast_input_strides[copy_bcast_dim] =
952
- params.input_block_strides[params.bcast_dim];
953
- params.bcast_block_strides[copy_bcast_dim] =
954
- params.output_strides[params.bcast_dim];
955
- params.bcast_block_sizes[broadcast_bcast_dim] =
956
- (last_multiple - first_multiple) / input_bcast_dim_size;
957
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
958
- params.bcast_block_strides[broadcast_bcast_dim] =
959
- params.output_strides[params.bcast_dim] *
960
- params.input_dims[params.bcast_dim];
961
- const Index offset = (first_multiple - bcast_dim_left_index) *
962
- m_outputStrides[params.bcast_dim];
963
-
964
- num_output_coeffs += BroadcastBlock(
965
- params.input_block_sizes, params.input_block_strides,
966
- params.bcast_block_sizes, params.bcast_block_strides,
967
- params.bcast_input_strides, bcast_offset, offset, scratch,
968
- materialized_output, materialized_input, materialized_input_size);
969
- }
970
- if (last_multiple < bcast_dim_left_index + params.bcast_dim_size) {
971
- const Index tail_size =
972
- bcast_dim_left_index + params.bcast_dim_size - last_multiple;
973
- params.input_block_sizes[params.bcast_dim] = tail_size;
974
- params.bcast_block_sizes[copy_bcast_dim] = tail_size;
975
- params.bcast_input_strides[copy_bcast_dim] =
976
- params.input_block_strides[params.bcast_dim];
977
- params.bcast_block_strides[copy_bcast_dim] =
978
- params.output_strides[params.bcast_dim];
979
- params.bcast_block_sizes[broadcast_bcast_dim] = 1;
980
- params.bcast_input_strides[broadcast_bcast_dim] = 0;
981
- params.bcast_block_strides[broadcast_bcast_dim] =
982
- params.output_strides[params.bcast_dim] *
983
- params.input_dims[params.bcast_dim];
984
- const Index offset = (last_multiple - bcast_dim_left_index) *
985
- m_outputStrides[params.bcast_dim];
986
-
987
- num_output_coeffs += BroadcastBlock(
988
- params.input_block_sizes, params.input_block_strides,
989
- params.bcast_block_sizes, params.bcast_block_strides,
990
- params.bcast_input_strides, bcast_offset, offset, scratch,
991
- materialized_output, materialized_input, materialized_input_size);
992
- }
993
- } else {
994
- // b and c do not exist.
995
- const int copy_bcast_dim =
996
- IsColMajor ? 2 * params.inner_dim_count
997
- : 2 * NumDims - 2 * params.inner_dim_count - 1;
998
- params.input_block_sizes[params.bcast_dim] = params.bcast_dim_size;
999
- params.bcast_block_sizes[copy_bcast_dim] = params.bcast_dim_size;
1000
- params.bcast_input_strides[copy_bcast_dim] =
1001
- params.input_block_strides[params.bcast_dim];
1002
- params.bcast_block_strides[copy_bcast_dim] =
1003
- params.output_strides[params.bcast_dim];
1004
-
1005
- num_output_coeffs += BroadcastBlock(
1006
- params.input_block_sizes, params.input_block_strides,
1007
- params.bcast_block_sizes, params.bcast_block_strides,
1008
- params.bcast_input_strides, bcast_offset, 0, scratch,
1009
- materialized_output, materialized_input, materialized_input_size);
1010
- }
1011
-
1012
- return num_output_coeffs;
1013
- }
1014
- }
1015
-
1016
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index BroadcastBlock(
1017
- const Dimensions& input_block_sizes,
1018
- const Dimensions& input_block_strides,
1019
- const BroadcastDimensions& bcast_block_sizes,
1020
- const BroadcastDimensions& bcast_block_strides,
1021
- const BroadcastDimensions& bcast_input_strides, Index bcast_offset,
1022
- Index offset, TensorBlockScratch& scratch,
1023
- ScalarNoConst* materialized_output, ScalarNoConst** materialized_input,
1024
- size_t* materialized_input_size) const {
1025
- // ---------------------------------------------------------------------- //
1026
- // Tensor block descriptor for reading block from the input.
1027
- const Index input_offset = bcast_offset + offset;
1028
- TensorBlockDesc input_desc(
1029
- IsColMajor ? indexColMajor(input_offset) : indexRowMajor(input_offset),
1030
- input_block_sizes);
1031
-
1032
- ArgTensorBlock input_block = m_impl.block(input_desc, scratch);
1033
-
1034
- // ---------------------------------------------------------------------- //
1035
- // Materialize input block into a temporary memory buffer only if it's not
1036
- // already available in the arg block.
1037
- const ScalarNoConst* input_buffer = NULL;
1038
-
1039
- if (input_block.data() != NULL) {
1040
- // Input block already has raw data, there is no need to materialize it.
1041
- input_buffer = input_block.data();
1042
-
1043
- } else {
1044
- // Otherwise we have to do block assignment into a temporary buffer.
1045
-
1046
- // Maybe reuse previously allocated buffer, or allocate a new one with a
1047
- // scratch allocator.
1048
- const size_t input_total_size = input_block_sizes.TotalSize();
1049
- if (*materialized_input == NULL ||
1050
- *materialized_input_size < input_total_size) {
1051
- *materialized_input_size = input_total_size;
1052
- void* mem = scratch.allocate(*materialized_input_size * sizeof(Scalar));
1053
- *materialized_input = static_cast<ScalarNoConst*>(mem);
1054
- }
1055
-
1056
- typedef internal::TensorBlockAssignment<
1057
- ScalarNoConst, NumDims, typename ArgTensorBlock::XprType, Index>
1058
- TensorBlockAssignment;
1059
-
1060
- TensorBlockAssignment::Run(
1061
- TensorBlockAssignment::target(input_block_sizes, input_block_strides,
1062
- *materialized_input),
1063
- input_block.expr());
1064
-
1065
- input_buffer = *materialized_input;
1066
- }
1067
-
1068
- // ---------------------------------------------------------------------- //
1069
- // Copy data from materialized input block to the materialized output, using
1070
- // given broadcast strides (strides with zeroes).
1071
- typedef internal::TensorBlockIO<ScalarNoConst, Index, 2 * NumDims, Layout>
1072
- TensorBlockIO;
1073
-
1074
- typename TensorBlockIO::Src src(bcast_input_strides, input_buffer);
1075
- typename TensorBlockIO::Dst dst(bcast_block_sizes, bcast_block_strides,
1076
- materialized_output + offset);
1077
-
1078
- return TensorBlockIO::Copy(dst, src);
1079
- }
1080
-
1081
- protected:
1082
- const Device EIGEN_DEVICE_REF m_device;
1083
- const typename internal::remove_reference<Broadcast>::type m_broadcast;
1084
- Dimensions m_dimensions;
1085
- array<Index, NumDims> m_outputStrides;
1086
- array<Index, NumDims> m_inputStrides;
1087
- TensorEvaluator<ArgType, Device> m_impl;
1088
- };
1089
-
1090
-
1091
- } // end namespace Eigen
1092
-
1093
- #endif // EIGEN_CXX11_TENSOR_TENSOR_BROADCASTING_H