sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h

@@ -1,351 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2001 Intel Corporation
-// Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-//
-// The algorithm below is a reimplementation of former \src\LU\Inverse_SSE.h using PacketMath.
-// inv(M) = M#/|M|, where inv(M), M# and |M| denote the inverse of M,
-// adjugate of M and determinant of M respectively. M# is computed block-wise
-// using specific formulae. For proof, see:
-// https://lxjk.github.io/2017/09/03/Fast-4x4-Matrix-Inverse-with-SSE-SIMD-Explained.html
-// Variable names are adopted from \src\LU\Inverse_SSE.h.
-//
-// The SSE code for the 4x4 float and double matrix inverse in former (deprecated) \src\LU\Inverse_SSE.h
-// comes from the following Intel's library:
-// http://software.intel.com/en-us/articles/optimized-matrix-library-for-use-with-the-intel-pentiumr-4-processors-sse2-instructions/
-//
-// Here is the respective copyright and license statement:
-//
-//   Copyright (c) 2001 Intel Corporation.
-//
-// Permition is granted to use, copy, distribute and prepare derivative works
-// of this library for any purpose and without fee, provided, that the above
-// copyright notice and this statement appear in all copies.
-// Intel makes no representations about the suitability of this software for
-// any purpose, and specifically disclaims all warranties.
-// See LEGAL.TXT for all the legal information.
-//
-// TODO: Unify implementations of different data types (i.e. float and double).
-#ifndef EIGEN_INVERSE_SIZE_4_H
-#define EIGEN_INVERSE_SIZE_4_H
-
-namespace Eigen
-{
-namespace internal
-{
-template <typename MatrixType, typename ResultType>
-struct compute_inverse_size4<Architecture::Target, float, MatrixType, ResultType>
-{
-  enum
-  {
-    MatrixAlignment = traits<MatrixType>::Alignment,
-    ResultAlignment = traits<ResultType>::Alignment,
-    StorageOrdersMatch = (MatrixType::Flags & RowMajorBit) == (ResultType::Flags & RowMajorBit)
-  };
-  typedef typename conditional<(MatrixType::Flags & LinearAccessBit), MatrixType const &, typename MatrixType::PlainObject>::type ActualMatrixType;
-
-  static void run(const MatrixType &mat, ResultType &result)
-  {
-    ActualMatrixType matrix(mat);
-
-    const float* data = matrix.data();
-    const Index stride = matrix.innerStride();
-    Packet4f _L1 = ploadt<Packet4f,MatrixAlignment>(data);
-    Packet4f _L2 = ploadt<Packet4f,MatrixAlignment>(data + stride*4);
-    Packet4f _L3 = ploadt<Packet4f,MatrixAlignment>(data + stride*8);
-    Packet4f _L4 = ploadt<Packet4f,MatrixAlignment>(data + stride*12);
-
-    // Four 2x2 sub-matrices of the input matrix
-    // input = [[A, B],
-    //          [C, D]]
-    Packet4f A, B, C, D;
-
-    if (!StorageOrdersMatch)
-    {
-      A = vec4f_unpacklo(_L1, _L2);
-      B = vec4f_unpacklo(_L3, _L4);
-      C = vec4f_unpackhi(_L1, _L2);
-      D = vec4f_unpackhi(_L3, _L4);
-    }
-    else
-    {
-      A = vec4f_movelh(_L1, _L2);
-      B = vec4f_movehl(_L2, _L1);
-      C = vec4f_movelh(_L3, _L4);
-      D = vec4f_movehl(_L4, _L3);
-    }
-
-    Packet4f AB, DC;
-
-    // AB = A# * B, where A# denotes the adjugate of A, and * denotes matrix product.
-    AB = pmul(vec4f_swizzle2(A, A, 3, 3, 0, 0), B);
-    AB = psub(AB, pmul(vec4f_swizzle2(A, A, 1, 1, 2, 2), vec4f_swizzle2(B, B, 2, 3, 0, 1)));
-
-    // DC = D#*C
-    DC = pmul(vec4f_swizzle2(D, D, 3, 3, 0, 0), C);
-    DC = psub(DC, pmul(vec4f_swizzle2(D, D, 1, 1, 2, 2), vec4f_swizzle2(C, C, 2, 3, 0, 1)));
-
-    // determinants of the sub-matrices
-    Packet4f dA, dB, dC, dD;
-
-    dA = pmul(vec4f_swizzle2(A, A, 3, 3, 1, 1), A);
-    dA = psub(dA, vec4f_movehl(dA, dA));
-
-    dB = pmul(vec4f_swizzle2(B, B, 3, 3, 1, 1), B);
-    dB = psub(dB, vec4f_movehl(dB, dB));
-
-    dC = pmul(vec4f_swizzle2(C, C, 3, 3, 1, 1), C);
-    dC = psub(dC, vec4f_movehl(dC, dC));
-
-    dD = pmul(vec4f_swizzle2(D, D, 3, 3, 1, 1), D);
-    dD = psub(dD, vec4f_movehl(dD, dD));
-
-    Packet4f d, d1, d2;
-
-    d = pmul(vec4f_swizzle2(DC, DC, 0, 2, 1, 3), AB);
-    d = padd(d, vec4f_movehl(d, d));
-    d = padd(d, vec4f_swizzle2(d, d, 1, 0, 0, 0));
-    d1 = pmul(dA, dD);
-    d2 = pmul(dB, dC);
-
-    // determinant of the input matrix, det = |A||D| + |B||C| - trace(A#*B*D#*C)
-    Packet4f det = vec4f_duplane(psub(padd(d1, d2), d), 0);
-
-    // reciprocal of the determinant of the input matrix, rd = 1/det
-    Packet4f rd = pdiv(pset1<Packet4f>(1.0f), det);
-
-    // Four sub-matrices of the inverse
-    Packet4f iA, iB, iC, iD;
-
-    // iD = D*|A| - C*A#*B
-    iD = pmul(vec4f_swizzle2(C, C, 0, 0, 2, 2), vec4f_movelh(AB, AB));
-    iD = padd(iD, pmul(vec4f_swizzle2(C, C, 1, 1, 3, 3), vec4f_movehl(AB, AB)));
-    iD = psub(pmul(D, vec4f_duplane(dA, 0)), iD);
-
-    // iA = A*|D| - B*D#*C
-    iA = pmul(vec4f_swizzle2(B, B, 0, 0, 2, 2), vec4f_movelh(DC, DC));
-    iA = padd(iA, pmul(vec4f_swizzle2(B, B, 1, 1, 3, 3), vec4f_movehl(DC, DC)));
-    iA = psub(pmul(A, vec4f_duplane(dD, 0)), iA);
-
-    // iB = C*|B| - D * (A#B)# = C*|B| - D*B#*A
-    iB = pmul(D, vec4f_swizzle2(AB, AB, 3, 0, 3, 0));
-    iB = psub(iB, pmul(vec4f_swizzle2(D, D, 1, 0, 3, 2), vec4f_swizzle2(AB, AB, 2, 1, 2, 1)));
-    iB = psub(pmul(C, vec4f_duplane(dB, 0)), iB);
-
-    // iC = B*|C| - A * (D#C)# = B*|C| - A*C#*D
-    iC = pmul(A, vec4f_swizzle2(DC, DC, 3, 0, 3, 0));
-    iC = psub(iC, pmul(vec4f_swizzle2(A, A, 1, 0, 3, 2), vec4f_swizzle2(DC, DC, 2, 1, 2, 1)));
-    iC = psub(pmul(B, vec4f_duplane(dC, 0)), iC);
-
-    const float sign_mask[4] = {0.0f, numext::bit_cast<float>(0x80000000u), numext::bit_cast<float>(0x80000000u), 0.0f};
-    const Packet4f p4f_sign_PNNP = ploadu<Packet4f>(sign_mask);
-    rd = pxor(rd, p4f_sign_PNNP);
-    iA = pmul(iA, rd);
-    iB = pmul(iB, rd);
-    iC = pmul(iC, rd);
-    iD = pmul(iD, rd);
-
-    Index res_stride = result.outerStride();
-    float *res = result.data();
-
-    pstoret<float, Packet4f, ResultAlignment>(res + 0, vec4f_swizzle2(iA, iB, 3, 1, 3, 1));
-    pstoret<float, Packet4f, ResultAlignment>(res + res_stride, vec4f_swizzle2(iA, iB, 2, 0, 2, 0));
-    pstoret<float, Packet4f, ResultAlignment>(res + 2 * res_stride, vec4f_swizzle2(iC, iD, 3, 1, 3, 1));
-    pstoret<float, Packet4f, ResultAlignment>(res + 3 * res_stride, vec4f_swizzle2(iC, iD, 2, 0, 2, 0));
-  }
-};
-
-#if !(defined EIGEN_VECTORIZE_NEON && !(EIGEN_ARCH_ARM64 && !EIGEN_APPLE_DOUBLE_NEON_BUG))
-// same algorithm as above, except that each operand is split into
-// halves for two registers to hold.
-template <typename MatrixType, typename ResultType>
-struct compute_inverse_size4<Architecture::Target, double, MatrixType, ResultType>
-{
-  enum
-  {
-    MatrixAlignment = traits<MatrixType>::Alignment,
-    ResultAlignment = traits<ResultType>::Alignment,
-    StorageOrdersMatch = (MatrixType::Flags & RowMajorBit) == (ResultType::Flags & RowMajorBit)
-  };
-  typedef typename conditional<(MatrixType::Flags & LinearAccessBit),
-                               MatrixType const &,
-                               typename MatrixType::PlainObject>::type
-      ActualMatrixType;
-
-  static void run(const MatrixType &mat, ResultType &result)
-  {
-    ActualMatrixType matrix(mat);
-
-    // Four 2x2 sub-matrices of the input matrix, each is further divided into upper and lower
-    // row e.g. A1, upper row of A, A2, lower row of A
-    // input = [[A, B],  =  [[[A1, [B1,
-    //          [C, D]]        A2], B2]],
-    //                       [[C1, [D1,
-    //                         C2], D2]]]
-
-    Packet2d A1, A2, B1, B2, C1, C2, D1, D2;
-
-    const double* data = matrix.data();
-    const Index stride = matrix.innerStride();
-    if (StorageOrdersMatch)
-    {
-      A1 = ploadt<Packet2d,MatrixAlignment>(data + stride*0);
-      B1 = ploadt<Packet2d,MatrixAlignment>(data + stride*2);
-      A2 = ploadt<Packet2d,MatrixAlignment>(data + stride*4);
-      B2 = ploadt<Packet2d,MatrixAlignment>(data + stride*6);
-      C1 = ploadt<Packet2d,MatrixAlignment>(data + stride*8);
-      D1 = ploadt<Packet2d,MatrixAlignment>(data + stride*10);
-      C2 = ploadt<Packet2d,MatrixAlignment>(data + stride*12);
-      D2 = ploadt<Packet2d,MatrixAlignment>(data + stride*14);
-    }
-    else
-    {
-      Packet2d temp;
-      A1 = ploadt<Packet2d,MatrixAlignment>(data + stride*0);
-      C1 = ploadt<Packet2d,MatrixAlignment>(data + stride*2);
-      A2 = ploadt<Packet2d,MatrixAlignment>(data + stride*4);
-      C2 = ploadt<Packet2d,MatrixAlignment>(data + stride*6);
-      temp = A1;
-      A1 = vec2d_unpacklo(A1, A2);
-      A2 = vec2d_unpackhi(temp, A2);
-
-      temp = C1;
-      C1 = vec2d_unpacklo(C1, C2);
-      C2 = vec2d_unpackhi(temp, C2);
-
-      B1 = ploadt<Packet2d,MatrixAlignment>(data + stride*8);
-      D1 = ploadt<Packet2d,MatrixAlignment>(data + stride*10);
-      B2 = ploadt<Packet2d,MatrixAlignment>(data + stride*12);
-      D2 = ploadt<Packet2d,MatrixAlignment>(data + stride*14);
-
-      temp = B1;
-      B1 = vec2d_unpacklo(B1, B2);
-      B2 = vec2d_unpackhi(temp, B2);
-
-      temp = D1;
-      D1 = vec2d_unpacklo(D1, D2);
-      D2 = vec2d_unpackhi(temp, D2);
-    }
-
-    // determinants of the sub-matrices
-    Packet2d dA, dB, dC, dD;
-
-    dA = vec2d_swizzle2(A2, A2, 1);
-    dA = pmul(A1, dA);
-    dA = psub(dA, vec2d_duplane(dA, 1));
-
-    dB = vec2d_swizzle2(B2, B2, 1);
-    dB = pmul(B1, dB);
-    dB = psub(dB, vec2d_duplane(dB, 1));
-
-    dC = vec2d_swizzle2(C2, C2, 1);
-    dC = pmul(C1, dC);
-    dC = psub(dC, vec2d_duplane(dC, 1));
-
-    dD = vec2d_swizzle2(D2, D2, 1);
-    dD = pmul(D1, dD);
-    dD = psub(dD, vec2d_duplane(dD, 1));
-
-    Packet2d DC1, DC2, AB1, AB2;
-
-    // AB = A# * B, where A# denotes the adjugate of A, and * denotes matrix product.
-    AB1 = pmul(B1, vec2d_duplane(A2, 1));
-    AB2 = pmul(B2, vec2d_duplane(A1, 0));
-    AB1 = psub(AB1, pmul(B2, vec2d_duplane(A1, 1)));
-    AB2 = psub(AB2, pmul(B1, vec2d_duplane(A2, 0)));
-
-    // DC = D#*C
-    DC1 = pmul(C1, vec2d_duplane(D2, 1));
-    DC2 = pmul(C2, vec2d_duplane(D1, 0));
-    DC1 = psub(DC1, pmul(C2, vec2d_duplane(D1, 1)));
-    DC2 = psub(DC2, pmul(C1, vec2d_duplane(D2, 0)));
-
-    Packet2d d1, d2;
-
-    // determinant of the input matrix, det = |A||D| + |B||C| - trace(A#*B*D#*C)
-    Packet2d det;
-
-    // reciprocal of the determinant of the input matrix, rd = 1/det
-    Packet2d rd;
-
-    d1 = pmul(AB1, vec2d_swizzle2(DC1, DC2, 0));
-    d2 = pmul(AB2, vec2d_swizzle2(DC1, DC2, 3));
-    rd = padd(d1, d2);
-    rd = padd(rd, vec2d_duplane(rd, 1));
-
-    d1 = pmul(dA, dD);
-    d2 = pmul(dB, dC);
-
-    det = padd(d1, d2);
-    det = psub(det, rd);
-    det = vec2d_duplane(det, 0);
-    rd = pdiv(pset1<Packet2d>(1.0), det);
-
-    // rows of four sub-matrices of the inverse
-    Packet2d iA1, iA2, iB1, iB2, iC1, iC2, iD1, iD2;
-
-    // iD = D*|A| - C*A#*B
-    iD1 = pmul(AB1, vec2d_duplane(C1, 0));
-    iD2 = pmul(AB1, vec2d_duplane(C2, 0));
-    iD1 = padd(iD1, pmul(AB2, vec2d_duplane(C1, 1)));
-    iD2 = padd(iD2, pmul(AB2, vec2d_duplane(C2, 1)));
-    dA = vec2d_duplane(dA, 0);
-    iD1 = psub(pmul(D1, dA), iD1);
-    iD2 = psub(pmul(D2, dA), iD2);
-
-    // iA = A*|D| - B*D#*C
-    iA1 = pmul(DC1, vec2d_duplane(B1, 0));
-    iA2 = pmul(DC1, vec2d_duplane(B2, 0));
-    iA1 = padd(iA1, pmul(DC2, vec2d_duplane(B1, 1)));
-    iA2 = padd(iA2, pmul(DC2, vec2d_duplane(B2, 1)));
-    dD = vec2d_duplane(dD, 0);
-    iA1 = psub(pmul(A1, dD), iA1);
-    iA2 = psub(pmul(A2, dD), iA2);
-
-    // iB = C*|B| - D * (A#B)# = C*|B| - D*B#*A
-    iB1 = pmul(D1, vec2d_swizzle2(AB2, AB1, 1));
-    iB2 = pmul(D2, vec2d_swizzle2(AB2, AB1, 1));
-    iB1 = psub(iB1, pmul(vec2d_swizzle2(D1, D1, 1), vec2d_swizzle2(AB2, AB1, 2)));
-    iB2 = psub(iB2, pmul(vec2d_swizzle2(D2, D2, 1), vec2d_swizzle2(AB2, AB1, 2)));
-    dB = vec2d_duplane(dB, 0);
-    iB1 = psub(pmul(C1, dB), iB1);
-    iB2 = psub(pmul(C2, dB), iB2);
-
-    // iC = B*|C| - A * (D#C)# = B*|C| - A*C#*D
-    iC1 = pmul(A1, vec2d_swizzle2(DC2, DC1, 1));
-    iC2 = pmul(A2, vec2d_swizzle2(DC2, DC1, 1));
-    iC1 = psub(iC1, pmul(vec2d_swizzle2(A1, A1, 1), vec2d_swizzle2(DC2, DC1, 2)));
-    iC2 = psub(iC2, pmul(vec2d_swizzle2(A2, A2, 1), vec2d_swizzle2(DC2, DC1, 2)));
-    dC = vec2d_duplane(dC, 0);
-    iC1 = psub(pmul(B1, dC), iC1);
-    iC2 = psub(pmul(B2, dC), iC2);
-
-    const double sign_mask1[2] = {0.0, numext::bit_cast<double>(0x8000000000000000ull)};
-    const double sign_mask2[2] = {numext::bit_cast<double>(0x8000000000000000ull), 0.0};
-    const Packet2d sign_PN = ploadu<Packet2d>(sign_mask1);
-    const Packet2d sign_NP = ploadu<Packet2d>(sign_mask2);
-    d1 = pxor(rd, sign_PN);
-    d2 = pxor(rd, sign_NP);
-
-    Index res_stride = result.outerStride();
-    double *res = result.data();
-    pstoret<double, Packet2d, ResultAlignment>(res + 0, pmul(vec2d_swizzle2(iA2, iA1, 3), d1));
-    pstoret<double, Packet2d, ResultAlignment>(res + res_stride, pmul(vec2d_swizzle2(iA2, iA1, 0), d2));
-    pstoret<double, Packet2d, ResultAlignment>(res + 2, pmul(vec2d_swizzle2(iB2, iB1, 3), d1));
-    pstoret<double, Packet2d, ResultAlignment>(res + res_stride + 2, pmul(vec2d_swizzle2(iB2, iB1, 0), d2));
-    pstoret<double, Packet2d, ResultAlignment>(res + 2 * res_stride, pmul(vec2d_swizzle2(iC2, iC1, 3), d1));
-    pstoret<double, Packet2d, ResultAlignment>(res + 3 * res_stride, pmul(vec2d_swizzle2(iC2, iC1, 0), d2));
-    pstoret<double, Packet2d, ResultAlignment>(res + 2 * res_stride + 2, pmul(vec2d_swizzle2(iD2, iD1, 3), d1));
-    pstoret<double, Packet2d, ResultAlignment>(res + 3 * res_stride + 2, pmul(vec2d_swizzle2(iD2, iD1, 0), d2));
-  }
-};
-#endif
-} // namespace internal
-} // namespace Eigen
-#endif

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h

@@ -1,137 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2012 Désiré Nuentsa-Wakam <desire.nuentsa_wakam@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-#ifndef METIS_SUPPORT_H
-#define METIS_SUPPORT_H
-
-namespace Eigen {
-/**
- * Get the fill-reducing ordering from the METIS package
- * 
- * If A is the original matrix and Ap is the permuted matrix, 
- * the fill-reducing permutation is defined as follows :
- * Row (column) i of A is the matperm(i) row (column) of Ap. 
- * WARNING: As computed by METIS, this corresponds to the vector iperm (instead of perm)
- */
-template <typename StorageIndex>
-class MetisOrdering
-{
-public:
-  typedef PermutationMatrix<Dynamic,Dynamic,StorageIndex> PermutationType;
-  typedef Matrix<StorageIndex,Dynamic,1> IndexVector; 
-  
-  template <typename MatrixType>
-  void get_symmetrized_graph(const MatrixType& A)
-  {
-    Index m = A.cols(); 
-    eigen_assert((A.rows() == A.cols()) && "ONLY FOR SQUARED MATRICES");
-    // Get the transpose of the input matrix 
-    MatrixType At = A.transpose(); 
-    // Get the number of nonzeros elements in each row/col of At+A
-    Index TotNz = 0; 
-    IndexVector visited(m); 
-    visited.setConstant(-1); 
-    for (StorageIndex j = 0; j < m; j++)
-    {
-      // Compute the union structure of of A(j,:) and At(j,:)
-      visited(j) = j; // Do not include the diagonal element
-      // Get the nonzeros in row/column j of A
-      for (typename MatrixType::InnerIterator it(A, j); it; ++it)
-      {
-        Index idx = it.index(); // Get the row index (for column major) or column index (for row major)
-        if (visited(idx) != j ) 
-        {
-          visited(idx) = j; 
-          ++TotNz; 
-        }
-      }
-      //Get the nonzeros in row/column j of At
-      for (typename MatrixType::InnerIterator it(At, j); it; ++it)
-      {
-        Index idx = it.index(); 
-        if(visited(idx) != j)
-        {
-          visited(idx) = j; 
-          ++TotNz; 
-        }
-      }
-    }
-    // Reserve place for A + At
-    m_indexPtr.resize(m+1);
-    m_innerIndices.resize(TotNz); 
-
-    // Now compute the real adjacency list of each column/row 
-    visited.setConstant(-1); 
-    StorageIndex CurNz = 0; 
-    for (StorageIndex j = 0; j < m; j++)
-    {
-      m_indexPtr(j) = CurNz; 
-      
-      visited(j) = j; // Do not include the diagonal element
-      // Add the pattern of row/column j of A to A+At
-      for (typename MatrixType::InnerIterator it(A,j); it; ++it)
-      {
-        StorageIndex idx = it.index(); // Get the row index (for column major) or column index (for row major)
-        if (visited(idx) != j ) 
-        {
-          visited(idx) = j; 
-          m_innerIndices(CurNz) = idx; 
-          CurNz++; 
-        }
-      }
-      //Add the pattern of row/column j of At to A+At
-      for (typename MatrixType::InnerIterator it(At, j); it; ++it)
-      {
-        StorageIndex idx = it.index(); 
-        if(visited(idx) != j)
-        {
-          visited(idx) = j; 
-          m_innerIndices(CurNz) = idx; 
-          ++CurNz; 
-        }
-      }
-    }
-    m_indexPtr(m) = CurNz;    
-  }
-  
-  template <typename MatrixType>
-  void operator() (const MatrixType& A, PermutationType& matperm)
-  {
-     StorageIndex m = internal::convert_index<StorageIndex>(A.cols()); // must be StorageIndex, because it is passed by address to METIS
-     IndexVector perm(m),iperm(m); 
-    // First, symmetrize the matrix graph. 
-     get_symmetrized_graph(A); 
-     int output_error;
-     
-     // Call the fill-reducing routine from METIS 
-     output_error = METIS_NodeND(&m, m_indexPtr.data(), m_innerIndices.data(), NULL, NULL, perm.data(), iperm.data());
-     
-    if(output_error != METIS_OK) 
-    {
-      //FIXME The ordering interface should define a class of possible errors 
-     std::cerr << "ERROR WHILE CALLING THE METIS PACKAGE \n"; 
-     return; 
-    }
-    
-    // Get the fill-reducing permutation 
-    //NOTE:  If Ap is the permuted matrix then perm and iperm vectors are defined as follows 
-    // Row (column) i of Ap is the perm(i) row(column) of A, and row (column) i of A is the iperm(i) row(column) of Ap
-    
-     matperm.resize(m);
-     for (int j = 0; j < m; j++)
-       matperm.indices()(iperm(j)) = j;
-   
-  }
-  
-  protected:
-    IndexVector m_indexPtr; // Pointer to the adjacenccy list of each row/column
-    IndexVector m_innerIndices; // Adjacency list 
-};
-
-}// end namespace eigen 
-#endif