sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl
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- sequenzo/__init__.py +64 -8
- sequenzo/big_data/clara/clara.py +1 -1
- sequenzo/big_data/clara/utils/get_weighted_diss.c +157 -157
- sequenzo/big_data/clara/utils/get_weighted_diss.cpython-39-darwin.so +0 -0
- sequenzo/clustering/KMedoids.py +39 -0
- sequenzo/clustering/hierarchical_clustering.py +304 -8
- sequenzo/define_sequence_data.py +44 -3
- sequenzo/dissimilarity_measures/c_code.cpython-39-darwin.so +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
- sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
- sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
- sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
- sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
- sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
- sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +157 -157
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-39-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +157 -157
- sequenzo/dissimilarity_measures/utils/seqconc.cpython-39-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +157 -157
- sequenzo/dissimilarity_measures/utils/seqdss.cpython-39-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +157 -157
- sequenzo/dissimilarity_measures/utils/seqdur.cpython-39-darwin.so +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +157 -157
- sequenzo/dissimilarity_measures/utils/seqlength.cpython-39-darwin.so +0 -0
- sequenzo/multidomain/cat.py +0 -53
- sequenzo/multidomain/idcd.py +0 -1
- sequenzo/openmp_setup.py +233 -0
- sequenzo/sequence_characteristics/__init__.py +4 -0
- sequenzo/sequence_characteristics/complexity_index.py +17 -57
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
- sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
- sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
- sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
- sequenzo/sequence_characteristics/turbulence.py +47 -67
- sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
- sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
- sequenzo/visualization/plot_sequence_index.py +58 -35
- sequenzo/visualization/plot_state_distribution.py +57 -36
- sequenzo/visualization/plot_transition_matrix.py +21 -22
- sequenzo/with_event_history_analysis/__init__.py +35 -0
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
- sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
- {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
- sequenzo-0.1.19.dist-info/RECORD +215 -0
- sequenzo/dissimilarity_measures/setup.py +0 -35
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
- sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
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- {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
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@@ -531,6 +531,42 @@ namespace xsimd
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531
531
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static_cast<int32_t>(wasm_f32x4_extract_lane(self, 3)));
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532
532
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}
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533
533
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}
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534
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+
// first
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535
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+
template <class A>
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536
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+
XSIMD_INLINE float first(batch<float, A> const& self, requires_arch<wasm>) noexcept
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537
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+
{
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538
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+
return wasm_f32x4_extract_lane(self, 0);
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539
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+
}
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540
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+
template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
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541
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+
XSIMD_INLINE T first(batch<T, A> const& self, requires_arch<wasm>) noexcept
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542
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+
{
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543
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+
XSIMD_IF_CONSTEXPR(sizeof(T) == 1)
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544
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+
{
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545
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+
return wasm_i8x16_extract_lane(self, 0);
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546
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+
}
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547
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+
else XSIMD_IF_CONSTEXPR(sizeof(T) == 2)
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548
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+
{
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549
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+
return wasm_i16x8_extract_lane(self, 0);
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550
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+
}
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551
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+
else XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
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552
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+
{
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553
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+
return wasm_i32x4_extract_lane(self, 0);
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554
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+
}
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555
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+
else XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
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556
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+
{
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557
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+
return wasm_i64x2_extract_lane(self, 0);
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558
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+
}
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559
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+
else
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560
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+
{
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561
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+
assert(false && "unsupported arch/op combination");
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562
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+
return {};
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563
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+
}
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564
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+
}
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565
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+
template <class A>
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566
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+
XSIMD_INLINE double first(batch<double, A> const& self, requires_arch<wasm>) noexcept
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567
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+
{
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568
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+
return wasm_f64x2_extract_lane(self, 0);
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569
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+
}
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534
570
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535
571
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// floor
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536
572
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template <class A>
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@@ -1170,7 +1206,7 @@ namespace xsimd
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1170
1206
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}
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1171
1207
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else
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1172
1208
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{
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1173
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-
return
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1209
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+
return reduce_add(self, common {});
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1174
1210
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}
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1175
1211
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}
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1212
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template <class A>
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@@ -1182,6 +1218,47 @@ namespace xsimd
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1182
1218
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return wasm_f64x2_extract_lane(tmp2, 0);
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1183
1219
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}
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1184
1220
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1221
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+
// reduce_mul
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1222
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+
template <class A>
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1223
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+
XSIMD_INLINE float reduce_mul(batch<float, A> const& self, requires_arch<wasm>) noexcept
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1224
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+
{
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1225
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+
v128_t tmp0 = wasm_f32x4_mul(self, wasm_i32x4_shuffle(self, self, 6, 7, 2, 3));
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1226
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+
v128_t tmp1 = wasm_i32x4_shuffle(tmp0, tmp0, 1, 0, 4, 4);
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1227
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+
v128_t tmp2 = wasm_f32x4_mul(tmp0, tmp1);
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1228
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+
v128_t tmp3 = wasm_i32x4_shuffle(tmp0, tmp2, 4, 1, 2, 3);
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1229
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+
return wasm_f32x4_extract_lane(tmp3, 0);
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1230
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+
}
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1231
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+
template <class A, class T, class = typename std::enable_if<std::is_integral<T>::value, void>::type>
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1232
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+
XSIMD_INLINE T reduce_mul(batch<T, A> const& self, requires_arch<wasm>) noexcept
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1233
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+
{
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1234
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+
XSIMD_IF_CONSTEXPR(sizeof(T) == 4)
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1235
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+
{
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1236
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+
v128_t tmp0 = wasm_i32x4_shuffle(self, wasm_i32x4_splat(0), 2, 3, 0, 0);
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1237
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+
v128_t tmp1 = wasm_i32x4_mul(self, tmp0);
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1238
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+
v128_t tmp2 = wasm_i32x4_shuffle(tmp1, wasm_i32x4_splat(0), 1, 0, 0, 0);
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1239
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+
v128_t tmp3 = wasm_i32x4_mul(tmp1, tmp2);
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1240
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+
return wasm_i32x4_extract_lane(tmp3, 0);
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1241
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+
}
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1242
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+
else XSIMD_IF_CONSTEXPR(sizeof(T) == 8)
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1243
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+
{
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1244
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+
v128_t tmp0 = wasm_i32x4_shuffle(self, wasm_i32x4_splat(0), 2, 3, 0, 0);
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1245
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+
v128_t tmp1 = wasm_i64x2_mul(self, tmp0);
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1246
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+
return wasm_i64x2_extract_lane(tmp1, 0);
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1247
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+
}
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1248
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+
else
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1249
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+
{
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1250
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+
return reduce_mul(self, common {});
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1251
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+
}
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1252
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+
}
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1253
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+
template <class A>
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1254
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+
XSIMD_INLINE double reduce_mul(batch<double, A> const& self, requires_arch<wasm>) noexcept
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1255
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+
{
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1256
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+
v128_t tmp0 = wasm_i64x2_shuffle(self, self, 1, 3);
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1257
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+
v128_t tmp1 = wasm_f64x2_mul(self, tmp0);
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1258
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+
v128_t tmp2 = wasm_i64x2_shuffle(tmp0, tmp1, 2, 1);
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1259
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+
return wasm_f64x2_extract_lane(tmp2, 0);
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1260
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+
}
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1261
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+
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1185
1262
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// rsqrt
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1186
1263
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template <class A>
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1187
1264
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XSIMD_INLINE batch<float, A> rsqrt(batch<float, A> const& self, requires_arch<wasm>) noexcept
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@@ -169,14 +169,16 @@ namespace xsimd
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169
169
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using all_sve_architectures = arch_list<detail::sve<512>, detail::sve<256>, detail::sve<128>>;
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170
170
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using all_rvv_architectures = arch_list<detail::rvv<512>, detail::rvv<256>, detail::rvv<128>>;
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171
171
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using all_arm_architectures = typename detail::join<all_sve_architectures, arch_list<i8mm<neon64>, neon64, neon>>::type;
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172
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+
using all_power_architectures = arch_list<vsx>;
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172
173
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using all_riscv_architectures = all_rvv_architectures;
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173
174
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using all_wasm_architectures = arch_list<wasm>;
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|
174
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-
using all_architectures = typename detail::join<all_riscv_architectures, all_wasm_architectures, all_arm_architectures, all_x86_architectures>::type;
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175
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+
using all_architectures = typename detail::join<all_power_architectures, all_riscv_architectures, all_wasm_architectures, all_arm_architectures, all_x86_architectures>::type;
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175
176
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176
177
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using supported_architectures = typename detail::supported<all_architectures>::type;
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177
178
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178
179
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using x86_arch = typename detail::supported<all_x86_architectures>::type::best;
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|
179
180
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using arm_arch = typename detail::supported<all_arm_architectures>::type::best;
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|
181
|
+
using power_arch = typename detail::supported<all_power_architectures>::type::best;
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|
180
182
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using riscv_arch = typename detail::supported<all_riscv_architectures>::type::best;
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181
183
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using best_arch = typename supported_architectures::best;
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182
184
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@@ -408,6 +408,17 @@
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408
408
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#define XSIMD_WITH_WASM 0
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|
409
409
|
#endif
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410
410
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411
|
+
/**
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|
412
|
+
* @ingroup xsimd_config_macro
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413
|
+
*
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414
|
+
* Set to 1 if VMX with VSX extension is available at compile-time, to 0 otherwise.
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|
415
|
+
*/
|
|
416
|
+
#if defined(__VEC__) && defined(__VSX__)
|
|
417
|
+
#define XSIMD_WITH_VSX 1
|
|
418
|
+
#else
|
|
419
|
+
#define XSIMD_WITH_VSX 0
|
|
420
|
+
#endif
|
|
421
|
+
|
|
411
422
|
// Workaround for MSVC compiler
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|
412
423
|
#ifdef _MSC_VER
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413
424
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|
@@ -459,14 +470,14 @@
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459
470
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|
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460
471
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#endif
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461
472
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|
|
462
|
-
#if XSIMD_WITH_SSE3 || defined(_M_AMD64) || defined(_M_X64) || (defined(_M_IX86_FP) && _M_IX86_FP >= 2)
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|
473
|
+
#if XSIMD_WITH_SSE3 || ((defined(_M_AMD64) || defined(_M_X64)) && !defined(_M_ARM64EC)) || (defined(_M_IX86_FP) && _M_IX86_FP >= 2)
|
|
463
474
|
#undef XSIMD_WITH_SSE2
|
|
464
475
|
#define XSIMD_WITH_SSE2 1
|
|
465
476
|
#endif
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|
466
477
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|
|
467
478
|
#endif
|
|
468
479
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|
|
469
|
-
#if !XSIMD_WITH_SSE2 && !XSIMD_WITH_SSE3 && !XSIMD_WITH_SSSE3 && !XSIMD_WITH_SSE4_1 && !XSIMD_WITH_SSE4_2 && !XSIMD_WITH_AVX && !XSIMD_WITH_AVX2 && !XSIMD_WITH_AVXVNNI && !XSIMD_WITH_FMA3_SSE && !XSIMD_WITH_FMA4 && !XSIMD_WITH_FMA3_AVX && !XSIMD_WITH_FMA3_AVX2 && !XSIMD_WITH_AVX512F && !XSIMD_WITH_AVX512CD && !XSIMD_WITH_AVX512DQ && !XSIMD_WITH_AVX512BW && !XSIMD_WITH_AVX512ER && !XSIMD_WITH_AVX512PF && !XSIMD_WITH_AVX512IFMA && !XSIMD_WITH_AVX512VBMI && !XSIMD_WITH_AVX512VBMI2 && !XSIMD_WITH_NEON && !XSIMD_WITH_NEON64 && !XSIMD_WITH_SVE && !XSIMD_WITH_RVV && !XSIMD_WITH_WASM
|
|
480
|
+
#if !XSIMD_WITH_SSE2 && !XSIMD_WITH_SSE3 && !XSIMD_WITH_SSSE3 && !XSIMD_WITH_SSE4_1 && !XSIMD_WITH_SSE4_2 && !XSIMD_WITH_AVX && !XSIMD_WITH_AVX2 && !XSIMD_WITH_AVXVNNI && !XSIMD_WITH_FMA3_SSE && !XSIMD_WITH_FMA4 && !XSIMD_WITH_FMA3_AVX && !XSIMD_WITH_FMA3_AVX2 && !XSIMD_WITH_AVX512F && !XSIMD_WITH_AVX512CD && !XSIMD_WITH_AVX512DQ && !XSIMD_WITH_AVX512BW && !XSIMD_WITH_AVX512ER && !XSIMD_WITH_AVX512PF && !XSIMD_WITH_AVX512IFMA && !XSIMD_WITH_AVX512VBMI && !XSIMD_WITH_AVX512VBMI2 && !XSIMD_WITH_NEON && !XSIMD_WITH_NEON64 && !XSIMD_WITH_SVE && !XSIMD_WITH_RVV && !XSIMD_WITH_WASM && !XSIMD_WITH_VSX && !XSIMD_WITH_EMULATED
|
|
470
481
|
#define XSIMD_NO_SUPPORTED_ARCHITECTURE
|
|
471
482
|
#endif
|
|
472
483
|
|
|
@@ -84,6 +84,7 @@ namespace xsimd
|
|
|
84
84
|
ARCH_FIELD_EX_REUSE(detail::rvv<256>, rvv)
|
|
85
85
|
ARCH_FIELD_EX_REUSE(detail::rvv<128>, rvv)
|
|
86
86
|
ARCH_FIELD(wasm)
|
|
87
|
+
ARCH_FIELD(vsx)
|
|
87
88
|
|
|
88
89
|
#undef ARCH_FIELD
|
|
89
90
|
|
|
@@ -95,6 +96,10 @@ namespace xsimd
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|
|
95
96
|
wasm = 1;
|
|
96
97
|
#endif
|
|
97
98
|
|
|
99
|
+
#if XSIMD_WITH_VSX
|
|
100
|
+
vsx = 1;
|
|
101
|
+
#endif
|
|
102
|
+
|
|
98
103
|
#if defined(__aarch64__) || defined(_M_ARM64)
|
|
99
104
|
neon = 1;
|
|
100
105
|
neon64 = 1;
|
|
@@ -12,8 +12,12 @@
|
|
|
12
12
|
#ifndef XSIMD_INLINE_HPP
|
|
13
13
|
#define XSIMD_INLINE_HPP
|
|
14
14
|
|
|
15
|
-
#if defined(
|
|
15
|
+
#if defined(__VEC__)
|
|
16
|
+
#define XSIMD_INLINE inline
|
|
17
|
+
#elif defined __has_attribute
|
|
18
|
+
#if __has_attribute(always_inline)
|
|
16
19
|
#define XSIMD_INLINE inline __attribute__((always_inline))
|
|
20
|
+
#endif
|
|
17
21
|
#elif defined(_MSC_VER)
|
|
18
22
|
#define XSIMD_INLINE inline __forceinline
|
|
19
23
|
#else
|
|
@@ -373,6 +373,12 @@ namespace xsimd
|
|
|
373
373
|
detail::static_check_supported_config<T, A>();
|
|
374
374
|
return kernel::bitwise_lshift<A>(x, shift, A {});
|
|
375
375
|
}
|
|
376
|
+
template <size_t shift, class T, class A>
|
|
377
|
+
XSIMD_INLINE batch<T, A> bitwise_lshift(batch<T, A> const& x) noexcept
|
|
378
|
+
{
|
|
379
|
+
detail::static_check_supported_config<T, A>();
|
|
380
|
+
return kernel::bitwise_lshift<shift, A>(x, A {});
|
|
381
|
+
}
|
|
376
382
|
|
|
377
383
|
/**
|
|
378
384
|
* @ingroup batch_bitwise
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|
@@ -452,6 +458,12 @@ namespace xsimd
|
|
|
452
458
|
detail::static_check_supported_config<T, A>();
|
|
453
459
|
return kernel::bitwise_rshift<A>(x, shift, A {});
|
|
454
460
|
}
|
|
461
|
+
template <size_t shift, class T, class A>
|
|
462
|
+
XSIMD_INLINE batch<T, A> bitwise_rshift(batch<T, A> const& x) noexcept
|
|
463
|
+
{
|
|
464
|
+
detail::static_check_supported_config<T, A>();
|
|
465
|
+
return kernel::bitwise_rshift<shift, A>(x, A {});
|
|
466
|
+
}
|
|
455
467
|
|
|
456
468
|
/**
|
|
457
469
|
* @ingroup batch_bitwise
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|
@@ -635,7 +647,7 @@ namespace xsimd
|
|
|
635
647
|
}
|
|
636
648
|
|
|
637
649
|
/**
|
|
638
|
-
* @ingroup
|
|
650
|
+
* @ingroup batch_bool_reducers
|
|
639
651
|
*
|
|
640
652
|
* Count the number of values set to true in the batch \c x
|
|
641
653
|
* @param x boolean or batch of boolean
|
|
@@ -991,6 +1003,21 @@ namespace xsimd
|
|
|
991
1003
|
return kernel::fnms<A>(x, y, z, A {});
|
|
992
1004
|
}
|
|
993
1005
|
|
|
1006
|
+
/**
|
|
1007
|
+
* @ingroup batch_arithmetic
|
|
1008
|
+
*
|
|
1009
|
+
* Computes <tt>-(x*y) - z</tt> in a single instruction when possible.
|
|
1010
|
+
* @param x a batch of integer or floating point values.
|
|
1011
|
+
* @param y a batch of integer or floating point values.
|
|
1012
|
+
* @param z a batch of integer or floating point values.
|
|
1013
|
+
* @return a batch where each even-indexed element is computed as <tt>x * y - z</tt> and each odd-indexed element as <tt>x * y + z</tt>
|
|
1014
|
+
*/
|
|
1015
|
+
template <class T, class A>
|
|
1016
|
+
XSIMD_INLINE batch<T, A> fmas(batch<T, A> const& x, batch<T, A> const& y, batch<T, A> const& z) noexcept
|
|
1017
|
+
{
|
|
1018
|
+
detail::static_check_supported_config<T, A>();
|
|
1019
|
+
return kernel::fmas<A>(x, y, z, A {});
|
|
1020
|
+
}
|
|
994
1021
|
/**
|
|
995
1022
|
* @ingroup batch_fp
|
|
996
1023
|
*
|
|
@@ -1114,6 +1141,7 @@ namespace xsimd
|
|
|
1114
1141
|
return kernel::incr_if<A>(x, mask, A {});
|
|
1115
1142
|
}
|
|
1116
1143
|
|
|
1144
|
+
#ifndef __FAST_MATH__
|
|
1117
1145
|
/**
|
|
1118
1146
|
* @ingroup batch_constant
|
|
1119
1147
|
*
|
|
@@ -1128,6 +1156,7 @@ namespace xsimd
|
|
|
1128
1156
|
detail::static_check_supported_config<T, A>();
|
|
1129
1157
|
return B(std::numeric_limits<T>::infinity());
|
|
1130
1158
|
}
|
|
1159
|
+
#endif
|
|
1131
1160
|
|
|
1132
1161
|
/**
|
|
1133
1162
|
* @ingroup batch_data_transfer
|
|
@@ -1862,6 +1891,20 @@ namespace xsimd
|
|
|
1862
1891
|
return kernel::reduce_min<A>(x, A {});
|
|
1863
1892
|
}
|
|
1864
1893
|
|
|
1894
|
+
/**
|
|
1895
|
+
* @ingroup batch_reducers
|
|
1896
|
+
*
|
|
1897
|
+
* Multiplies of all the scalars of the batch \c x.
|
|
1898
|
+
* @param x batch involved in the reduction
|
|
1899
|
+
* @return the result of the reduction.
|
|
1900
|
+
*/
|
|
1901
|
+
template <class T, class A>
|
|
1902
|
+
XSIMD_INLINE T reduce_mul(batch<T, A> const& x) noexcept
|
|
1903
|
+
{
|
|
1904
|
+
detail::static_check_supported_config<T, A>();
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1905
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+
return kernel::reduce_mul<A>(x, A {});
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1906
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+
}
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+
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/**
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1866
1909
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* @ingroup batch_math
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1867
1910
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*
|
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@@ -1949,6 +1992,12 @@ namespace xsimd
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1949
1992
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detail::static_check_supported_config<T, A>();
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1950
1993
|
return kernel::rotl<A>(x, shift, A {});
|
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1994
|
}
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1995
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+
template <size_t count, class T, class A>
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|
+
XSIMD_INLINE batch<T, A> rotl(batch<T, A> const& x) noexcept
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{
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detail::static_check_supported_config<T, A>();
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}
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2001
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|
/**
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2003
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* @ingroup batch_bitwise
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2020
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detail::static_check_supported_config<T, A>();
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1972
2021
|
return kernel::rotr<A>(x, shift, A {});
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2022
|
}
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2023
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+
template <size_t count, class T, class A>
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2024
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+
XSIMD_INLINE batch<T, A> rotr(batch<T, A> const& x) noexcept
|
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2025
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+
{
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detail::static_check_supported_config<T, A>();
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+
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+
}
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2029
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/**
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* @ingroup batch_rounding
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@@ -2107,6 +2162,7 @@ namespace xsimd
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2107
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shuffle(batch<T, A> const& x, batch<T, A> const& y, batch_constant<Vt, A, Values...> mask) noexcept
|
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{
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|
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*
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* @warning The behavior of this function is platform-dependent on big
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+
* endian architectures.
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*
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|
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@@ -2206,6 +2265,9 @@ namespace xsimd
|
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2265
|
* Slide the whole batch to the right by \c N bytes. This is different from
|
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2207
2266
|
* \c bitwise_rshift that shifts each batch element to the right.
|
|
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2267
|
*
|
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|
+
* @warning The behavior of this function is platform-dependent on big
|
|
2269
|
+
* endian architectures.
|
|
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|
+
*
|
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|
* @tparam N Amount of bytes to slide to the right.
|
|
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|
* @param x batch of integer values.
|
|
2211
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|
* @return slided batch.
|
|
@@ -2416,6 +2478,7 @@ namespace xsimd
|
|
|
2416
2478
|
XSIMD_INLINE batch<std::complex<T>, A> swizzle(batch<std::complex<T>, A> const& x, batch_constant<Vt, A, Values...> mask) noexcept
|
|
2417
2479
|
{
|
|
2418
2480
|
static_assert(sizeof(T) == sizeof(Vt), "consistent mask");
|
|
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|
+
static_assert(std::is_unsigned<Vt>::value, "mask must hold unsigned indices");
|
|
2419
2482
|
detail::static_check_supported_config<T, A>();
|
|
2420
2483
|
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|
|
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2484
|
}
|
|
@@ -159,6 +159,8 @@ namespace xsimd
|
|
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159
|
|
|
160
160
|
XSIMD_INLINE T get(std::size_t i) const noexcept;
|
|
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161
|
|
|
162
|
+
XSIMD_INLINE T first() const noexcept;
|
|
163
|
+
|
|
162
164
|
// comparison operators. Defined as friend to enable automatic
|
|
163
165
|
// conversion of parameters from scalar to batch, at the cost of using a
|
|
164
166
|
// proxy implementation from details::.
|
|
@@ -271,8 +273,10 @@ namespace xsimd
|
|
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273
|
XSIMD_INLINE batch logical_or(batch const& other) const noexcept;
|
|
272
274
|
};
|
|
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275
|
|
|
276
|
+
#if __cplusplus < 201703L
|
|
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277
|
template <class T, class A>
|
|
275
278
|
constexpr std::size_t batch<T, A>::size;
|
|
279
|
+
#endif
|
|
276
280
|
|
|
277
281
|
/**
|
|
278
282
|
* @brief batch of predicate over scalar or complex values.
|
|
@@ -314,6 +318,8 @@ namespace xsimd
|
|
|
314
318
|
|
|
315
319
|
XSIMD_INLINE bool get(std::size_t i) const noexcept;
|
|
316
320
|
|
|
321
|
+
XSIMD_INLINE bool first() const noexcept;
|
|
322
|
+
|
|
317
323
|
// mask operations
|
|
318
324
|
XSIMD_INLINE uint64_t mask() const noexcept;
|
|
319
325
|
XSIMD_INLINE static batch_bool from_mask(uint64_t mask) noexcept;
|
|
@@ -344,8 +350,10 @@ namespace xsimd
|
|
|
344
350
|
static XSIMD_INLINE register_type make_register(detail::index_sequence<>, V... v) noexcept;
|
|
345
351
|
};
|
|
346
352
|
|
|
353
|
+
#if __cplusplus < 201703L
|
|
347
354
|
template <class T, class A>
|
|
348
355
|
constexpr std::size_t batch_bool<T, A>::size;
|
|
356
|
+
#endif
|
|
349
357
|
|
|
350
358
|
/**
|
|
351
359
|
* @brief batch of complex values.
|
|
@@ -405,6 +413,8 @@ namespace xsimd
|
|
|
405
413
|
|
|
406
414
|
XSIMD_INLINE value_type get(std::size_t i) const noexcept;
|
|
407
415
|
|
|
416
|
+
XSIMD_INLINE value_type first() const noexcept;
|
|
417
|
+
|
|
408
418
|
#ifdef XSIMD_ENABLE_XTL_COMPLEX
|
|
409
419
|
// xtl-related methods
|
|
410
420
|
template <bool i3ec>
|
|
@@ -476,8 +486,10 @@ namespace xsimd
|
|
|
476
486
|
real_batch m_imag;
|
|
477
487
|
};
|
|
478
488
|
|
|
489
|
+
#if __cplusplus < 201703L
|
|
479
490
|
template <class T, class A>
|
|
480
491
|
constexpr std::size_t batch<std::complex<T>, A>::size;
|
|
492
|
+
#endif
|
|
481
493
|
|
|
482
494
|
#ifdef XSIMD_ENABLE_XTL_COMPLEX
|
|
483
495
|
template <typename T, bool i3ec, typename A>
|
|
@@ -693,6 +705,16 @@ namespace xsimd
|
|
|
693
705
|
return kernel::get(*this, i, A {});
|
|
694
706
|
}
|
|
695
707
|
|
|
708
|
+
/**
|
|
709
|
+
* Retrieve the first scalar element in this batch.
|
|
710
|
+
*/
|
|
711
|
+
template <class T, class A>
|
|
712
|
+
XSIMD_INLINE T batch<T, A>::first() const noexcept
|
|
713
|
+
{
|
|
714
|
+
detail::static_check_supported_config<T, A>();
|
|
715
|
+
return kernel::first(*this, A {});
|
|
716
|
+
}
|
|
717
|
+
|
|
696
718
|
/******************************
|
|
697
719
|
* batch comparison operators *
|
|
698
720
|
******************************/
|
|
@@ -1005,6 +1027,13 @@ namespace xsimd
|
|
|
1005
1027
|
return kernel::get(*this, i, A {});
|
|
1006
1028
|
}
|
|
1007
1029
|
|
|
1030
|
+
template <class T, class A>
|
|
1031
|
+
XSIMD_INLINE bool batch_bool<T, A>::first() const noexcept
|
|
1032
|
+
{
|
|
1033
|
+
detail::static_check_supported_config<T, A>();
|
|
1034
|
+
return kernel::first(*this, A {});
|
|
1035
|
+
}
|
|
1036
|
+
|
|
1008
1037
|
/***********************************
|
|
1009
1038
|
* batch_bool comparison operators *
|
|
1010
1039
|
***********************************/
|
|
@@ -1248,6 +1277,13 @@ namespace xsimd
|
|
|
1248
1277
|
return kernel::get(*this, i, A {});
|
|
1249
1278
|
}
|
|
1250
1279
|
|
|
1280
|
+
template <class T, class A>
|
|
1281
|
+
XSIMD_INLINE auto batch<std::complex<T>, A>::first() const noexcept -> value_type
|
|
1282
|
+
{
|
|
1283
|
+
detail::static_check_supported_config<std::complex<T>, A>();
|
|
1284
|
+
return kernel::first(*this, A {});
|
|
1285
|
+
}
|
|
1286
|
+
|
|
1251
1287
|
/**************************************
|
|
1252
1288
|
* batch<complex> xtl-related methods *
|
|
1253
1289
|
**************************************/
|
|
@@ -62,9 +62,12 @@ namespace xsimd
|
|
|
62
62
|
static constexpr size_t rvv_width_mf4 = XSIMD_RVV_BITS / 4;
|
|
63
63
|
static constexpr size_t rvv_width_mf2 = XSIMD_RVV_BITS / 2;
|
|
64
64
|
static constexpr size_t rvv_width_m1 = XSIMD_RVV_BITS;
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
65
|
+
|
|
66
|
+
// Cope with gcc limitation, see https://gcc.gnu.org/bugzilla/show_bug.cgi?id=116484
|
|
67
|
+
#define XSIMD_RVV_WIDTH_MF8 (XSIMD_RVV_BITS / 8)
|
|
68
|
+
#define XSIMD_RVV_WIDTH_MF4 (XSIMD_RVV_BITS / 4)
|
|
69
|
+
#define XSIMD_RVV_WIDTH_MF2 (XSIMD_RVV_BITS / 2)
|
|
70
|
+
#define XSIMD_RVV_WIDTH_M1 XSIMD_RVV_BITS
|
|
68
71
|
|
|
69
72
|
// rvv_type_info is a utility class to convert scalar type and
|
|
70
73
|
// bitwidth into rvv register types.
|
|
@@ -79,30 +82,30 @@ namespace xsimd
|
|
|
79
82
|
//
|
|
80
83
|
template <class T, size_t Width>
|
|
81
84
|
struct rvv_type_info;
|
|
82
|
-
#define XSIMD_RVV_MAKE_TYPE(scalar, t, s, vmul)
|
|
83
|
-
template <>
|
|
84
|
-
struct rvv_type_info<scalar, rvv_width_m1 * vmul>
|
|
85
|
-
{
|
|
86
|
-
static constexpr size_t width = rvv_width_m1 * vmul;
|
|
87
|
-
using type = XSIMD_RVV_TYPE(t, s, vmul);
|
|
88
|
-
using byte_type = XSIMD_RVV_TYPE(u, 8, vmul);
|
|
89
|
-
using fixed_type = type __attribute__((riscv_rvv_vector_bits(width)));
|
|
90
|
-
template <class U>
|
|
91
|
-
static XSIMD_INLINE type bitcast(U x) noexcept
|
|
92
|
-
{
|
|
93
|
-
const auto words = XSIMD_RVV_JOINT5(__riscv_vreinterpret_, u, s, m, vmul)(x);
|
|
94
|
-
return XSIMD_RVV_JOINT5(__riscv_vreinterpret_, t, s, m, vmul)(words);
|
|
95
|
-
}
|
|
96
|
-
template
|
|
97
|
-
XSIMD_INLINE
|
|
98
|
-
|
|
99
|
-
|
|
100
|
-
|
|
101
|
-
|
|
102
|
-
|
|
103
|
-
|
|
104
|
-
|
|
105
|
-
}
|
|
85
|
+
#define XSIMD_RVV_MAKE_TYPE(scalar, t, s, vmul) \
|
|
86
|
+
template <> \
|
|
87
|
+
struct rvv_type_info<scalar, rvv_width_m1 * vmul> \
|
|
88
|
+
{ \
|
|
89
|
+
static constexpr size_t width = rvv_width_m1 * vmul; \
|
|
90
|
+
using type = XSIMD_RVV_TYPE(t, s, vmul); \
|
|
91
|
+
using byte_type = XSIMD_RVV_TYPE(u, 8, vmul); \
|
|
92
|
+
using fixed_type = type __attribute__((riscv_rvv_vector_bits(/*width=*/XSIMD_RVV_WIDTH_M1 * vmul))); \
|
|
93
|
+
template <class U> \
|
|
94
|
+
static XSIMD_INLINE type bitcast(U x) noexcept \
|
|
95
|
+
{ \
|
|
96
|
+
const auto words = XSIMD_RVV_JOINT5(__riscv_vreinterpret_, u, s, m, vmul)(x); \
|
|
97
|
+
return XSIMD_RVV_JOINT5(__riscv_vreinterpret_, t, s, m, vmul)(words); \
|
|
98
|
+
} \
|
|
99
|
+
template <class U> \
|
|
100
|
+
static XSIMD_INLINE byte_type as_bytes(U x) noexcept \
|
|
101
|
+
{ \
|
|
102
|
+
static_assert(std::is_same<U, type>::value, "inconsistent conversion types"); \
|
|
103
|
+
const auto words = XSIMD_RVV_JOINT5(__riscv_vreinterpret_, u, s, m, vmul)(x); \
|
|
104
|
+
return XSIMD_RVV_JOINT5(__riscv_vreinterpret_, u, 8, m, vmul)(words); \
|
|
105
|
+
} \
|
|
106
|
+
}; \
|
|
107
|
+
template <> \
|
|
108
|
+
XSIMD_INLINE XSIMD_RVV_TYPE(t, s, vmul) rvv_type_info<scalar, rvv_width_m1 * vmul>::bitcast<XSIMD_RVV_TYPE(t, s, vmul)>(XSIMD_RVV_TYPE(t, s, vmul) x) noexcept { return x; }
|
|
106
109
|
|
|
107
110
|
#define XSIMD_RVV_MAKE_TYPES(vmul) \
|
|
108
111
|
XSIMD_RVV_MAKE_TYPE(int8_t, i, 8, vmul) \
|
|
@@ -235,17 +238,17 @@ namespace xsimd
|
|
|
235
238
|
template <>
|
|
236
239
|
struct semitype<2>
|
|
237
240
|
{
|
|
238
|
-
using type = vuint8mf2_t __attribute__((riscv_rvv_vector_bits(
|
|
241
|
+
using type = vuint8mf2_t __attribute__((riscv_rvv_vector_bits(XSIMD_RVV_WIDTH_MF2)));
|
|
239
242
|
};
|
|
240
243
|
template <>
|
|
241
244
|
struct semitype<4>
|
|
242
245
|
{
|
|
243
|
-
using type = vuint8mf4_t __attribute__((riscv_rvv_vector_bits(
|
|
246
|
+
using type = vuint8mf4_t __attribute__((riscv_rvv_vector_bits(XSIMD_RVV_WIDTH_MF4)));
|
|
244
247
|
};
|
|
245
248
|
template <>
|
|
246
249
|
struct semitype<8>
|
|
247
250
|
{
|
|
248
|
-
using type = vuint8mf8_t __attribute__((riscv_rvv_vector_bits(
|
|
251
|
+
using type = vuint8mf8_t __attribute__((riscv_rvv_vector_bits(XSIMD_RVV_WIDTH_MF8)));
|
|
249
252
|
};
|
|
250
253
|
using fixed_type = typename semitype<divisor>::type;
|
|
251
254
|
using super::as_bytes;
|
|
@@ -374,7 +377,7 @@ namespace xsimd
|
|
|
374
377
|
struct rvv_bool
|
|
375
378
|
{
|
|
376
379
|
using bool_info = rvv_bool_info<rvv_width_m1 * sizeof(T) * 8 / Width>;
|
|
377
|
-
using storage_type = vuint8m1_t __attribute__((riscv_rvv_vector_bits(
|
|
380
|
+
using storage_type = vuint8m1_t __attribute__((riscv_rvv_vector_bits(XSIMD_RVV_WIDTH_M1)));
|
|
378
381
|
using type = typename bool_info::type;
|
|
379
382
|
storage_type value;
|
|
380
383
|
rvv_bool() = default;
|
|
@@ -489,6 +492,12 @@ namespace xsimd
|
|
|
489
492
|
using type = detail::rvv_bool_simd_register<T>;
|
|
490
493
|
};
|
|
491
494
|
} // namespace types
|
|
495
|
+
|
|
496
|
+
#undef XSIMD_RVV_WIDTH_MF8
|
|
497
|
+
#undef XSIMD_RVV_WIDTH_MF4
|
|
498
|
+
#undef XSIMD_RVV_WIDTH_MF2
|
|
499
|
+
#undef XSIMD_RVV_WIDTH_M1
|
|
500
|
+
|
|
492
501
|
#else
|
|
493
502
|
using rvv = detail::rvv<0xFFFFFFFF>;
|
|
494
503
|
#endif
|
|
@@ -53,8 +53,10 @@ namespace xsimd
|
|
|
53
53
|
static constexpr size_t size = 1;
|
|
54
54
|
};
|
|
55
55
|
|
|
56
|
+
#if __cplusplus < 201703L
|
|
56
57
|
template <class T>
|
|
57
58
|
constexpr size_t simd_traits_impl<T, false>::size;
|
|
59
|
+
#endif
|
|
58
60
|
|
|
59
61
|
template <class T>
|
|
60
62
|
struct simd_traits_impl<T, true>
|
|
@@ -64,8 +66,10 @@ namespace xsimd
|
|
|
64
66
|
static constexpr size_t size = type::size;
|
|
65
67
|
};
|
|
66
68
|
|
|
69
|
+
#if __cplusplus < 201703L
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|
67
70
|
template <class T>
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|
68
71
|
constexpr size_t simd_traits_impl<T, true>::size;
|
|
72
|
+
#endif
|
|
69
73
|
|
|
70
74
|
template <class T, class A>
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|
71
75
|
struct static_check_supported_config_emitter
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@@ -128,8 +132,10 @@ namespace xsimd
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|
|
128
132
|
static constexpr size_t size = simd_traits<type>::size;
|
|
129
133
|
};
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|
130
134
|
|
|
135
|
+
#if __cplusplus < 201703L
|
|
131
136
|
template <class T>
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|
132
137
|
constexpr size_t revert_simd_traits<T>::size;
|
|
138
|
+
#endif
|
|
133
139
|
|
|
134
140
|
template <class T>
|
|
135
141
|
struct revert_simd_traits<batch<T>>
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|
@@ -138,8 +144,10 @@ namespace xsimd
|
|
|
138
144
|
static constexpr size_t size = batch<T>::size;
|
|
139
145
|
};
|
|
140
146
|
|
|
147
|
+
#if __cplusplus < 201703L
|
|
141
148
|
template <class T>
|
|
142
149
|
constexpr size_t revert_simd_traits<batch<T>>::size;
|
|
150
|
+
#endif
|
|
143
151
|
|
|
144
152
|
template <class T>
|
|
145
153
|
using simd_type = typename simd_traits<T>::type;
|