sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h

@@ -1,330 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2016 Eugene Brevdo <ebrevdo@gmail.com>
-// Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_SPECIALFUNCTIONS_FUNCTORS_H
-#define EIGEN_SPECIALFUNCTIONS_FUNCTORS_H
-
-namespace Eigen {
-
-namespace internal {
-
-
-/** \internal
-  * \brief Template functor to compute the incomplete gamma function igamma(a, x)
-  *
-  * \sa class CwiseBinaryOp, Cwise::igamma
-  */
-template<typename Scalar> struct scalar_igamma_op : binary_op_base<Scalar,Scalar>
-{
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_igamma_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& x) const {
-    using numext::igamma; return igamma(a, x);
-  }
-  template<typename Packet>
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a, const Packet& x) const {
-    return internal::pigamma(a, x);
-  }
-};
-template<typename Scalar>
-struct functor_traits<scalar_igamma_op<Scalar> > {
-  enum {
-    // Guesstimate
-    Cost = 20 * NumTraits<Scalar>::MulCost + 10 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasIGamma
-  };
-};
-
-/** \internal
-  * \brief Template functor to compute the derivative of the incomplete gamma
-  * function igamma_der_a(a, x)
-  *
-  * \sa class CwiseBinaryOp, Cwise::igamma_der_a
-  */
-template <typename Scalar>
-struct scalar_igamma_der_a_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_igamma_der_a_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& a, const Scalar& x) const {
-    using numext::igamma_der_a;
-    return igamma_der_a(a, x);
-  }
-  template <typename Packet>
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a, const Packet& x) const {
-    return internal::pigamma_der_a(a, x);
-  }
-};
-template <typename Scalar>
-struct functor_traits<scalar_igamma_der_a_op<Scalar> > {
-  enum {
-    // 2x the cost of igamma
-    Cost = 40 * NumTraits<Scalar>::MulCost + 20 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasIGammaDerA
-  };
-};
-
-/** \internal
-  * \brief Template functor to compute the derivative of the sample
-  * of a Gamma(alpha, 1) random variable with respect to the parameter alpha
-  * gamma_sample_der_alpha(alpha, sample)
-  *
-  * \sa class CwiseBinaryOp, Cwise::gamma_sample_der_alpha
-  */
-template <typename Scalar>
-struct scalar_gamma_sample_der_alpha_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_gamma_sample_der_alpha_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator()(const Scalar& alpha, const Scalar& sample) const {
-    using numext::gamma_sample_der_alpha;
-    return gamma_sample_der_alpha(alpha, sample);
-  }
-  template <typename Packet>
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Packet packetOp(const Packet& alpha, const Packet& sample) const {
-    return internal::pgamma_sample_der_alpha(alpha, sample);
-  }
-};
-template <typename Scalar>
-struct functor_traits<scalar_gamma_sample_der_alpha_op<Scalar> > {
-  enum {
-    // 2x the cost of igamma, minus the lgamma cost (the lgamma cancels out)
-    Cost = 30 * NumTraits<Scalar>::MulCost + 15 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasGammaSampleDerAlpha
-  };
-};
-
-/** \internal
-  * \brief Template functor to compute the complementary incomplete gamma function igammac(a, x)
-  *
-  * \sa class CwiseBinaryOp, Cwise::igammac
-  */
-template<typename Scalar> struct scalar_igammac_op : binary_op_base<Scalar,Scalar>
-{
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_igammac_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& x) const {
-    using numext::igammac; return igammac(a, x);
-  }
-  template<typename Packet>
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Packet packetOp(const Packet& a, const Packet& x) const
-  {
-    return internal::pigammac(a, x);
-  }
-};
-template<typename Scalar>
-struct functor_traits<scalar_igammac_op<Scalar> > {
-  enum {
-    // Guesstimate
-    Cost = 20 * NumTraits<Scalar>::MulCost + 10 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasIGammac
-  };
-};
-
-
-/** \internal
-  * \brief Template functor to compute the incomplete beta integral betainc(a, b, x)
-  *
-  */
-template<typename Scalar> struct scalar_betainc_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_betainc_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& x, const Scalar& a, const Scalar& b) const {
-    using numext::betainc; return betainc(x, a, b);
-  }
-  template<typename Packet>
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Packet packetOp(const Packet& x, const Packet& a, const Packet& b) const
-  {
-    return internal::pbetainc(x, a, b);
-  }
-};
-template<typename Scalar>
-struct functor_traits<scalar_betainc_op<Scalar> > {
-  enum {
-    // Guesstimate
-    Cost = 400 * NumTraits<Scalar>::MulCost + 400 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasBetaInc
-  };
-};
-
-
-/** \internal
- * \brief Template functor to compute the natural log of the absolute
- * value of Gamma of a scalar
- * \sa class CwiseUnaryOp, Cwise::lgamma()
- */
-template<typename Scalar> struct scalar_lgamma_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_lgamma_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a) const {
-    using numext::lgamma; return lgamma(a);
-  }
-  typedef typename packet_traits<Scalar>::type Packet;
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& a) const { return internal::plgamma(a); }
-};
-template<typename Scalar>
-struct functor_traits<scalar_lgamma_op<Scalar> >
-{
-  enum {
-    // Guesstimate
-    Cost = 10 * NumTraits<Scalar>::MulCost + 5 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasLGamma
-  };
-};
-
-/** \internal
- * \brief Template functor to compute psi, the derivative of lgamma of a scalar.
- * \sa class CwiseUnaryOp, Cwise::digamma()
- */
-template<typename Scalar> struct scalar_digamma_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_digamma_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a) const {
-    using numext::digamma; return digamma(a);
-  }
-  typedef typename packet_traits<Scalar>::type Packet;
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& a) const { return internal::pdigamma(a); }
-};
-template<typename Scalar>
-struct functor_traits<scalar_digamma_op<Scalar> >
-{
-  enum {
-    // Guesstimate
-    Cost = 10 * NumTraits<Scalar>::MulCost + 5 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasDiGamma
-  };
-};
-
-/** \internal
- * \brief Template functor to compute the Riemann Zeta function of two arguments.
- * \sa class CwiseUnaryOp, Cwise::zeta()
- */
-template<typename Scalar> struct scalar_zeta_op {
-    EIGEN_EMPTY_STRUCT_CTOR(scalar_zeta_op)
-    EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& x, const Scalar& q) const {
-        using numext::zeta; return zeta(x, q);
-    }
-    typedef typename packet_traits<Scalar>::type Packet;
-    EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x, const Packet& q) const { return internal::pzeta(x, q); }
-};
-template<typename Scalar>
-struct functor_traits<scalar_zeta_op<Scalar> >
-{
-    enum {
-        // Guesstimate
-        Cost = 10 * NumTraits<Scalar>::MulCost + 5 * NumTraits<Scalar>::AddCost,
-        PacketAccess = packet_traits<Scalar>::HasZeta
-    };
-};
-
-/** \internal
- * \brief Template functor to compute the polygamma function.
- * \sa class CwiseUnaryOp, Cwise::polygamma()
- */
-template<typename Scalar> struct scalar_polygamma_op {
-    EIGEN_EMPTY_STRUCT_CTOR(scalar_polygamma_op)
-    EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& n, const Scalar& x) const {
-        using numext::polygamma; return polygamma(n, x);
-    }
-    typedef typename packet_traits<Scalar>::type Packet;
-    EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& n, const Packet& x) const { return internal::ppolygamma(n, x); }
-};
-template<typename Scalar>
-struct functor_traits<scalar_polygamma_op<Scalar> >
-{
-    enum {
-        // Guesstimate
-        Cost = 10 * NumTraits<Scalar>::MulCost + 5 * NumTraits<Scalar>::AddCost,
-        PacketAccess = packet_traits<Scalar>::HasPolygamma
-    };
-};
-
-/** \internal
- * \brief Template functor to compute the error function of a scalar
- * \sa class CwiseUnaryOp, ArrayBase::erf()
- */
-template<typename Scalar> struct scalar_erf_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_erf_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar
-  operator()(const Scalar& a) const {
-    return numext::erf(a);
-  }
-  template <typename Packet>
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& x) const {
-    return perf(x);
-  }
-};
-template <typename Scalar>
-struct functor_traits<scalar_erf_op<Scalar> > {
-  enum {
-    PacketAccess = packet_traits<Scalar>::HasErf,
-    Cost =
-        (PacketAccess
-#ifdef EIGEN_VECTORIZE_FMA
-             // TODO(rmlarsen): Move the FMA cost model to a central location.
-             // Haswell can issue 2 add/mul/madd per cycle.
-             // 10 pmadd, 2 pmul, 1 div, 2 other
-             ? (2 * NumTraits<Scalar>::AddCost +
-                7 * NumTraits<Scalar>::MulCost +
-                scalar_div_cost<Scalar, packet_traits<Scalar>::HasDiv>::value)
-#else
-             ? (12 * NumTraits<Scalar>::AddCost +
-                12 * NumTraits<Scalar>::MulCost +
-                scalar_div_cost<Scalar, packet_traits<Scalar>::HasDiv>::value)
-#endif
-             // Assume for simplicity that this is as expensive as an exp().
-             : (functor_traits<scalar_exp_op<Scalar> >::Cost))
-  };
-};
-
-/** \internal
- * \brief Template functor to compute the Complementary Error Function
- * of a scalar
- * \sa class CwiseUnaryOp, Cwise::erfc()
- */
-template<typename Scalar> struct scalar_erfc_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_erfc_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a) const {
-    using numext::erfc; return erfc(a);
-  }
-  typedef typename packet_traits<Scalar>::type Packet;
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& a) const { return internal::perfc(a); }
-};
-template<typename Scalar>
-struct functor_traits<scalar_erfc_op<Scalar> >
-{
-  enum {
-    // Guesstimate
-    Cost = 10 * NumTraits<Scalar>::MulCost + 5 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasErfc
-  };
-};
-
-/** \internal
- * \brief Template functor to compute the Inverse of the normal distribution
- * function of a scalar
- * \sa class CwiseUnaryOp, Cwise::ndtri()
- */
-template<typename Scalar> struct scalar_ndtri_op {
-  EIGEN_EMPTY_STRUCT_CTOR(scalar_ndtri_op)
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a) const {
-    using numext::ndtri; return ndtri(a);
-  }
-  typedef typename packet_traits<Scalar>::type Packet;
-  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet packetOp(const Packet& a) const { return internal::pndtri(a); }
-};
-template<typename Scalar>
-struct functor_traits<scalar_ndtri_op<Scalar> >
-{
-  enum {
-    // On average, We are evaluating rational functions with degree N=9 in the
-    // numerator and denominator. This results in 2*N additions and 2*N
-    // multiplications.
-    Cost = 18 * NumTraits<Scalar>::MulCost + 18 * NumTraits<Scalar>::AddCost,
-    PacketAccess = packet_traits<Scalar>::HasNdtri
-  };
-};
-
-} // end namespace internal
-
-} // end namespace Eigen
-
-#endif // EIGEN_SPECIALFUNCTIONS_FUNCTORS_H

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h

@@ -1,58 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_SPECIALFUNCTIONS_HALF_H
-#define EIGEN_SPECIALFUNCTIONS_HALF_H
-
-namespace Eigen {
-namespace numext {
-
-#if EIGEN_HAS_C99_MATH
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half lgamma(const Eigen::half& a) {
-  return Eigen::half(Eigen::numext::lgamma(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half digamma(const Eigen::half& a) {
-  return Eigen::half(Eigen::numext::digamma(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half zeta(const Eigen::half& x, const Eigen::half& q) {
-  return Eigen::half(Eigen::numext::zeta(static_cast<float>(x), static_cast<float>(q)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half polygamma(const Eigen::half& n, const Eigen::half& x) {
-  return Eigen::half(Eigen::numext::polygamma(static_cast<float>(n), static_cast<float>(x)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half erf(const Eigen::half& a) {
-  return Eigen::half(Eigen::numext::erf(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half erfc(const Eigen::half& a) {
-  return Eigen::half(Eigen::numext::erfc(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half ndtri(const Eigen::half& a) {
-  return Eigen::half(Eigen::numext::ndtri(static_cast<float>(a)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half igamma(const Eigen::half& a, const Eigen::half& x) {
-  return Eigen::half(Eigen::numext::igamma(static_cast<float>(a), static_cast<float>(x)));
-}
-template <>
-EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half igamma_der_a(const Eigen::half& a, const Eigen::half& x) {
-  return Eigen::half(Eigen::numext::igamma_der_a(static_cast<float>(a), static_cast<float>(x)));
-}
-template <>
-EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half gamma_sample_der_alpha(const Eigen::half& alpha, const Eigen::half& sample) {
-  return Eigen::half(Eigen::numext::gamma_sample_der_alpha(static_cast<float>(alpha), static_cast<float>(sample)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half igammac(const Eigen::half& a, const Eigen::half& x) {
-  return Eigen::half(Eigen::numext::igammac(static_cast<float>(a), static_cast<float>(x)));
-}
-template<> EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Eigen::half betainc(const Eigen::half& a, const Eigen::half& b, const Eigen::half& x) {
-  return Eigen::half(Eigen::numext::betainc(static_cast<float>(a), static_cast<float>(b), static_cast<float>(x)));
-}
-#endif
-
-}  // end namespace numext
-}  // end namespace Eigen
-
-#endif  // EIGEN_SPECIALFUNCTIONS_HALF_H