sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h

@@ -1,293 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2013 Christian Seiler <christian@iwakd.de>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_TENSORSYMMETRY_DYNAMICSYMMETRY_H
-#define EIGEN_CXX11_TENSORSYMMETRY_DYNAMICSYMMETRY_H
-
-namespace Eigen {
-
-class DynamicSGroup
-{
-  public:
-    inline explicit DynamicSGroup() : m_numIndices(1), m_elements(), m_generators(), m_globalFlags(0) { m_elements.push_back(ge(Generator(0, 0, 0))); }
-    inline DynamicSGroup(const DynamicSGroup& o) : m_numIndices(o.m_numIndices), m_elements(o.m_elements), m_generators(o.m_generators), m_globalFlags(o.m_globalFlags) { }
-    inline DynamicSGroup(DynamicSGroup&& o) : m_numIndices(o.m_numIndices), m_elements(), m_generators(o.m_generators), m_globalFlags(o.m_globalFlags) { std::swap(m_elements, o.m_elements); }
-    inline DynamicSGroup& operator=(const DynamicSGroup& o) { m_numIndices = o.m_numIndices; m_elements = o.m_elements; m_generators = o.m_generators; m_globalFlags = o.m_globalFlags; return *this; }
-    inline DynamicSGroup& operator=(DynamicSGroup&& o) { m_numIndices = o.m_numIndices; std::swap(m_elements, o.m_elements); m_generators = o.m_generators; m_globalFlags = o.m_globalFlags; return *this; }
-
-    void add(int one, int two, int flags = 0);
-
-    template<typename Gen_>
-    inline void add(Gen_) { add(Gen_::One, Gen_::Two, Gen_::Flags); }
-    inline void addSymmetry(int one, int two) { add(one, two, 0); }
-    inline void addAntiSymmetry(int one, int two) { add(one, two, NegationFlag); }
-    inline void addHermiticity(int one, int two) { add(one, two, ConjugationFlag); }
-    inline void addAntiHermiticity(int one, int two) { add(one, two, NegationFlag | ConjugationFlag); }
-
-    template<typename Op, typename RV, typename Index, std::size_t N, typename... Args>
-    inline RV apply(const std::array<Index, N>& idx, RV initial, Args&&... args) const
-    {
-      eigen_assert(N >= m_numIndices && "Can only apply symmetry group to objects that have at least the required amount of indices.");
-      for (std::size_t i = 0; i < size(); i++)
-        initial = Op::run(h_permute(i, idx, typename internal::gen_numeric_list<int, N>::type()), m_elements[i].flags, initial, std::forward<Args>(args)...);
-      return initial;
-    }
-
-    template<typename Op, typename RV, typename Index, typename... Args>
-    inline RV apply(const std::vector<Index>& idx, RV initial, Args&&... args) const
-    {
-      eigen_assert(idx.size() >= m_numIndices && "Can only apply symmetry group to objects that have at least the required amount of indices.");
-      for (std::size_t i = 0; i < size(); i++)
-        initial = Op::run(h_permute(i, idx), m_elements[i].flags, initial, std::forward<Args>(args)...);
-      return initial;
-    }
-
-    inline int globalFlags() const { return m_globalFlags; }
-    inline std::size_t size() const { return m_elements.size(); }
-
-    template<typename Tensor_, typename... IndexTypes>
-    inline internal::tensor_symmetry_value_setter<Tensor_, DynamicSGroup> operator()(Tensor_& tensor, typename Tensor_::Index firstIndex, IndexTypes... otherIndices) const
-    {
-      static_assert(sizeof...(otherIndices) + 1 == Tensor_::NumIndices, "Number of indices used to access a tensor coefficient must be equal to the rank of the tensor.");
-      return operator()(tensor, std::array<typename Tensor_::Index, Tensor_::NumIndices>{{firstIndex, otherIndices...}});
-    }
-
-    template<typename Tensor_>
-    inline internal::tensor_symmetry_value_setter<Tensor_, DynamicSGroup> operator()(Tensor_& tensor, std::array<typename Tensor_::Index, Tensor_::NumIndices> const& indices) const
-    {
-      return internal::tensor_symmetry_value_setter<Tensor_, DynamicSGroup>(tensor, *this, indices);
-    }
-  private:
-    struct GroupElement {
-      std::vector<int> representation;
-      int flags;
-      bool isId() const
-      {
-        for (std::size_t i = 0; i < representation.size(); i++)
-          if (i != (size_t)representation[i])
-            return false;
-        return true;
-      }
-    };
-    struct Generator {
-      int one;
-      int two;
-      int flags;
-      constexpr inline Generator(int one_, int two_, int flags_) : one(one_), two(two_), flags(flags_) {}
-    };
-
-    std::size_t m_numIndices;
-    std::vector<GroupElement> m_elements;
-    std::vector<Generator> m_generators;
-    int m_globalFlags;
-
-    template<typename Index, std::size_t N, int... n>
-    inline std::array<Index, N> h_permute(std::size_t which, const std::array<Index, N>& idx, internal::numeric_list<int, n...>) const
-    {
-      return std::array<Index, N>{{ idx[n >= m_numIndices ? n : m_elements[which].representation[n]]... }};
-    }
-
-    template<typename Index>
-    inline std::vector<Index> h_permute(std::size_t which, std::vector<Index> idx) const
-    {
-      std::vector<Index> result;
-      result.reserve(idx.size());
-      for (auto k : m_elements[which].representation)
-        result.push_back(idx[k]);
-      for (std::size_t i = m_numIndices; i < idx.size(); i++)
-        result.push_back(idx[i]);
-      return result;
-    }
-
-    inline GroupElement ge(Generator const& g) const
-    {
-      GroupElement result;
-      result.representation.reserve(m_numIndices);
-      result.flags = g.flags;
-      for (std::size_t k = 0; k < m_numIndices; k++) {
-        if (k == (std::size_t)g.one)
-          result.representation.push_back(g.two);
-        else if (k == (std::size_t)g.two)
-          result.representation.push_back(g.one);
-        else
-          result.representation.push_back(int(k));
-      }
-      return result;
-    }
-
-    GroupElement mul(GroupElement, GroupElement) const;
-    inline GroupElement mul(Generator g1, GroupElement g2) const
-    {
-      return mul(ge(g1), g2);
-    }
-
-    inline GroupElement mul(GroupElement g1, Generator g2) const
-    {
-      return mul(g1, ge(g2));
-    }
-
-    inline GroupElement mul(Generator g1, Generator g2) const
-    {
-      return mul(ge(g1), ge(g2));
-    }
-
-    inline int findElement(GroupElement e) const
-    {
-      for (auto ee : m_elements) {
-        if (ee.representation == e.representation)
-          return ee.flags ^ e.flags;
-      }
-      return -1;
-    }
-
-    void updateGlobalFlags(int flagDiffOfSameGenerator);
-};
-
-// dynamic symmetry group that auto-adds the template parameters in the constructor
-template<typename... Gen>
-class DynamicSGroupFromTemplateArgs : public DynamicSGroup
-{
-  public:
-    inline DynamicSGroupFromTemplateArgs() : DynamicSGroup()
-    {
-      add_all(internal::type_list<Gen...>());
-    }
-    inline DynamicSGroupFromTemplateArgs(DynamicSGroupFromTemplateArgs const& other) : DynamicSGroup(other) { }
-    inline DynamicSGroupFromTemplateArgs(DynamicSGroupFromTemplateArgs&& other) : DynamicSGroup(other) { }
-    inline DynamicSGroupFromTemplateArgs<Gen...>& operator=(const DynamicSGroupFromTemplateArgs<Gen...>& o) { DynamicSGroup::operator=(o); return *this; }
-    inline DynamicSGroupFromTemplateArgs<Gen...>& operator=(DynamicSGroupFromTemplateArgs<Gen...>&& o) { DynamicSGroup::operator=(o); return *this; }
-  
-  private:
-    template<typename Gen1, typename... GenNext>
-    inline void add_all(internal::type_list<Gen1, GenNext...>)
-    {
-      add(Gen1());
-      add_all(internal::type_list<GenNext...>());
-    }
-
-    inline void add_all(internal::type_list<>)
-    {
-    }
-};
-
-inline DynamicSGroup::GroupElement DynamicSGroup::mul(GroupElement g1, GroupElement g2) const
-{
-  eigen_internal_assert(g1.representation.size() == m_numIndices);
-  eigen_internal_assert(g2.representation.size() == m_numIndices);
-
-  GroupElement result;
-  result.representation.reserve(m_numIndices);
-  for (std::size_t i = 0; i < m_numIndices; i++) {
-    int v = g2.representation[g1.representation[i]];
-    eigen_assert(v >= 0);
-    result.representation.push_back(v);
-  }
-  result.flags = g1.flags ^ g2.flags;
-  return result;
-}
-
-inline void DynamicSGroup::add(int one, int two, int flags)
-{
-  eigen_assert(one >= 0);
-  eigen_assert(two >= 0);
-  eigen_assert(one != two);
-
-  if ((std::size_t)one >= m_numIndices || (std::size_t)two >= m_numIndices) {
-    std::size_t newNumIndices = (one > two) ? one : two + 1;
-    for (auto& gelem : m_elements) {
-      gelem.representation.reserve(newNumIndices);
-      for (std::size_t i = m_numIndices; i < newNumIndices; i++)
-        gelem.representation.push_back(i);
-    }
-    m_numIndices = newNumIndices;
-  }
-
-  Generator g{one, two, flags};
-  GroupElement e = ge(g);
-
-  /* special case for first generator */
-  if (m_elements.size() == 1) {
-    while (!e.isId()) {
-      m_elements.push_back(e);
-      e = mul(e, g);
-    }
-
-    if (e.flags > 0)
-      updateGlobalFlags(e.flags);
-
-    // only add in case we didn't have identity
-    if (m_elements.size() > 1)
-      m_generators.push_back(g);
-    return;
-  }
-
-  int p = findElement(e);
-  if (p >= 0) {
-    updateGlobalFlags(p);
-    return;
-  }
-
-  std::size_t coset_order = m_elements.size();
-  m_elements.push_back(e);
-  for (std::size_t i = 1; i < coset_order; i++)
-    m_elements.push_back(mul(m_elements[i], e));
-  m_generators.push_back(g);
-
-  std::size_t coset_rep = coset_order;
-  do {
-    for (auto g : m_generators) {
-      e = mul(m_elements[coset_rep], g);
-      p = findElement(e);
-      if (p < 0) {
-        // element not yet in group
-        m_elements.push_back(e);
-        for (std::size_t i = 1; i < coset_order; i++)
-          m_elements.push_back(mul(m_elements[i], e));
-      } else if (p > 0) {
-        updateGlobalFlags(p);
-      }
-    }
-    coset_rep += coset_order;
-  } while (coset_rep < m_elements.size());
-}
-
-inline void DynamicSGroup::updateGlobalFlags(int flagDiffOfSameGenerator)
-{
-    switch (flagDiffOfSameGenerator) {
-      case 0:
-      default:
-        // nothing happened
-        break;
-      case NegationFlag:
-        // every element is it's own negative => whole tensor is zero
-        m_globalFlags |= GlobalZeroFlag;
-        break;
-      case ConjugationFlag:
-        // every element is it's own conjugate => whole tensor is real
-        m_globalFlags |= GlobalRealFlag;
-        break;
-      case (NegationFlag | ConjugationFlag):
-        // every element is it's own negative conjugate => whole tensor is imaginary
-        m_globalFlags |= GlobalImagFlag;
-        break;
-      /* NOTE:
-       *   since GlobalZeroFlag == GlobalRealFlag | GlobalImagFlag, if one generator
-       *   causes the tensor to be real and the next one to be imaginary, this will
-       *   trivially give the correct result
-       */
-    }
-}
-
-} // end namespace Eigen
-
-#endif // EIGEN_CXX11_TENSORSYMMETRY_DYNAMICSYMMETRY_H
-
-/*
- * kate: space-indent on; indent-width 2; mixedindent off; indent-mode cstyle;
- */

sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h

@@ -1,236 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2013 Christian Seiler <christian@iwakd.de>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_CXX11_TENSORSYMMETRY_STATICSYMMETRY_H
-#define EIGEN_CXX11_TENSORSYMMETRY_STATICSYMMETRY_H
-
-namespace Eigen {
-
-namespace internal {
-
-template<typename list> struct tensor_static_symgroup_permutate;
-
-template<int... nn>
-struct tensor_static_symgroup_permutate<numeric_list<int, nn...>>
-{
-  constexpr static std::size_t N = sizeof...(nn);
-
-  template<typename T>
-  constexpr static inline std::array<T, N> run(const std::array<T, N>& indices)
-  {
-    return {{indices[nn]...}};
-  }
-};
-
-template<typename indices_, int flags_>
-struct tensor_static_symgroup_element
-{
-  typedef indices_ indices;
-  constexpr static int flags = flags_;
-};
-
-template<typename Gen, int N>
-struct tensor_static_symgroup_element_ctor
-{
-  typedef tensor_static_symgroup_element<
-    typename gen_numeric_list_swapped_pair<int, N, Gen::One, Gen::Two>::type,
-    Gen::Flags
-  > type;
-};
-
-template<int N>
-struct tensor_static_symgroup_identity_ctor
-{
-  typedef tensor_static_symgroup_element<
-    typename gen_numeric_list<int, N>::type,
-    0
-  > type;
-};
-
-template<typename iib>
-struct tensor_static_symgroup_multiply_helper
-{
-  template<int... iia>
-  constexpr static inline numeric_list<int, get<iia, iib>::value...> helper(numeric_list<int, iia...>) {
-    return numeric_list<int, get<iia, iib>::value...>();
-  }
-};
-
-template<typename A, typename B>
-struct tensor_static_symgroup_multiply
-{
-  private:
-    typedef typename A::indices iia;
-    typedef typename B::indices iib;
-    constexpr static int ffa = A::flags;
-    constexpr static int ffb = B::flags;
-  
-  public:
-    static_assert(iia::count == iib::count, "Cannot multiply symmetry elements with different number of indices.");
-
-    typedef tensor_static_symgroup_element<
-      decltype(tensor_static_symgroup_multiply_helper<iib>::helper(iia())),
-      ffa ^ ffb
-    > type;
-};
-
-template<typename A, typename B>
-struct tensor_static_symgroup_equality
-{
-    typedef typename A::indices iia;
-    typedef typename B::indices iib;
-    constexpr static int ffa = A::flags;
-    constexpr static int ffb = B::flags;
-    static_assert(iia::count == iib::count, "Cannot compare symmetry elements with different number of indices.");
-
-    constexpr static bool value = is_same<iia, iib>::value;
-
-  private:
-    /* this should be zero if they are identical, or else the tensor
-     * will be forced to be pure real, pure imaginary or even pure zero
-     */
-    constexpr static int flags_cmp_ = ffa ^ ffb;
-
-    /* either they are not equal, then we don't care whether the flags
-     * match, or they are equal, and then we have to check
-     */
-    constexpr static bool is_zero      = value && flags_cmp_ == NegationFlag;
-    constexpr static bool is_real      = value && flags_cmp_ == ConjugationFlag;
-    constexpr static bool is_imag      = value && flags_cmp_ == (NegationFlag | ConjugationFlag);
-
-  public:
-    constexpr static int global_flags = 
-      (is_real ? GlobalRealFlag : 0) |
-      (is_imag ? GlobalImagFlag : 0) |
-      (is_zero ? GlobalZeroFlag : 0);
-};
-
-template<std::size_t NumIndices, typename... Gen>
-struct tensor_static_symgroup
-{
-  typedef StaticSGroup<Gen...> type;
-  constexpr static std::size_t size = type::static_size;
-};
-
-template<typename Index, std::size_t N, int... ii, int... jj>
-constexpr static inline std::array<Index, N> tensor_static_symgroup_index_permute(std::array<Index, N> idx, internal::numeric_list<int, ii...>, internal::numeric_list<int, jj...>)
-{
-  return {{ idx[ii]..., idx[jj]... }};
-}
-
-template<typename Index, int... ii>
-static inline std::vector<Index> tensor_static_symgroup_index_permute(std::vector<Index> idx, internal::numeric_list<int, ii...>)
-{
-  std::vector<Index> result{{ idx[ii]... }};
-  std::size_t target_size = idx.size();
-  for (std::size_t i = result.size(); i < target_size; i++)
-    result.push_back(idx[i]);
-  return result;
-}
-
-template<typename T> struct tensor_static_symgroup_do_apply;
-
-template<typename first, typename... next>
-struct tensor_static_symgroup_do_apply<internal::type_list<first, next...>>
-{
-  template<typename Op, typename RV, std::size_t SGNumIndices, typename Index, std::size_t NumIndices, typename... Args>
-  static inline RV run(const std::array<Index, NumIndices>& idx, RV initial, Args&&... args)
-  {
-    static_assert(NumIndices >= SGNumIndices, "Can only apply symmetry group to objects that have at least the required amount of indices.");
-    typedef typename internal::gen_numeric_list<int, NumIndices - SGNumIndices, SGNumIndices>::type remaining_indices;
-    initial = Op::run(tensor_static_symgroup_index_permute(idx, typename first::indices(), remaining_indices()), first::flags, initial, std::forward<Args>(args)...);
-    return tensor_static_symgroup_do_apply<internal::type_list<next...>>::template run<Op, RV, SGNumIndices>(idx, initial, args...);
-  }
-
-  template<typename Op, typename RV, std::size_t SGNumIndices, typename Index, typename... Args>
-  static inline RV run(const std::vector<Index>& idx, RV initial, Args&&... args)
-  {
-    eigen_assert(idx.size() >= SGNumIndices && "Can only apply symmetry group to objects that have at least the required amount of indices.");
-    initial = Op::run(tensor_static_symgroup_index_permute(idx, typename first::indices()), first::flags, initial, std::forward<Args>(args)...);
-    return tensor_static_symgroup_do_apply<internal::type_list<next...>>::template run<Op, RV, SGNumIndices>(idx, initial, args...);
-  }
-};
-
-template<EIGEN_TPL_PP_SPEC_HACK_DEF(typename, empty)>
-struct tensor_static_symgroup_do_apply<internal::type_list<EIGEN_TPL_PP_SPEC_HACK_USE(empty)>>
-{
-  template<typename Op, typename RV, std::size_t SGNumIndices, typename Index, std::size_t NumIndices, typename... Args>
-  static inline RV run(const std::array<Index, NumIndices>&, RV initial, Args&&...)
-  {
-    // do nothing
-    return initial;
-  }
-
-  template<typename Op, typename RV, std::size_t SGNumIndices, typename Index, typename... Args>
-  static inline RV run(const std::vector<Index>&, RV initial, Args&&...)
-  {
-    // do nothing
-    return initial;
-  }
-};
-
-} // end namespace internal
-
-template<typename... Gen>
-class StaticSGroup
-{
-    constexpr static std::size_t NumIndices = internal::tensor_symmetry_num_indices<Gen...>::value;
-    typedef internal::group_theory::enumerate_group_elements<
-      internal::tensor_static_symgroup_multiply,
-      internal::tensor_static_symgroup_equality,
-      typename internal::tensor_static_symgroup_identity_ctor<NumIndices>::type,
-      internal::type_list<typename internal::tensor_static_symgroup_element_ctor<Gen, NumIndices>::type...>
-    > group_elements;
-    typedef typename group_elements::type ge;
-  public:
-    constexpr inline StaticSGroup() {}
-    constexpr inline StaticSGroup(const StaticSGroup<Gen...>&) {}
-    constexpr inline StaticSGroup(StaticSGroup<Gen...>&&) {}
-
-    template<typename Op, typename RV, typename Index, std::size_t N, typename... Args>
-    static inline RV apply(const std::array<Index, N>& idx, RV initial, Args&&... args)
-    {
-      return internal::tensor_static_symgroup_do_apply<ge>::template run<Op, RV, NumIndices>(idx, initial, args...);
-    }
-
-    template<typename Op, typename RV, typename Index, typename... Args>
-    static inline RV apply(const std::vector<Index>& idx, RV initial, Args&&... args)
-    {
-      eigen_assert(idx.size() == NumIndices);
-      return internal::tensor_static_symgroup_do_apply<ge>::template run<Op, RV, NumIndices>(idx, initial, args...);
-    }
-
-    constexpr static std::size_t static_size = ge::count;
-
-    constexpr static inline std::size_t size() {
-      return ge::count;
-    }
-    constexpr static inline int globalFlags() { return group_elements::global_flags; }
-
-    template<typename Tensor_, typename... IndexTypes>
-    inline internal::tensor_symmetry_value_setter<Tensor_, StaticSGroup<Gen...>> operator()(Tensor_& tensor, typename Tensor_::Index firstIndex, IndexTypes... otherIndices) const
-    {
-      static_assert(sizeof...(otherIndices) + 1 == Tensor_::NumIndices, "Number of indices used to access a tensor coefficient must be equal to the rank of the tensor.");
-      return operator()(tensor, std::array<typename Tensor_::Index, Tensor_::NumIndices>{{firstIndex, otherIndices...}});
-    }
-
-    template<typename Tensor_>
-    inline internal::tensor_symmetry_value_setter<Tensor_, StaticSGroup<Gen...>> operator()(Tensor_& tensor, std::array<typename Tensor_::Index, Tensor_::NumIndices> const& indices) const
-    {
-      return internal::tensor_symmetry_value_setter<Tensor_, StaticSGroup<Gen...>>(tensor, *this, indices);
-    }
-};
-
-} // end namespace Eigen
-
-#endif // EIGEN_CXX11_TENSORSYMMETRY_STATICSYMMETRY_H
-
-/*
- * kate: space-indent on; indent-width 2; mixedindent off; indent-mode cstyle;
- */