sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +157 -157
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-39-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-39-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +157 -157
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-39-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +157 -157
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-39-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +157 -157
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-39-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +157 -157
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-39-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +157 -157
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-39-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
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  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,696 +0,0 @@
1
-
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-
3
- typedef CwiseUnaryOp<internal::scalar_abs_op<Scalar>, const Derived> AbsReturnType;
4
- typedef CwiseUnaryOp<internal::scalar_arg_op<Scalar>, const Derived> ArgReturnType;
5
- typedef CwiseUnaryOp<internal::scalar_abs2_op<Scalar>, const Derived> Abs2ReturnType;
6
- typedef CwiseUnaryOp<internal::scalar_sqrt_op<Scalar>, const Derived> SqrtReturnType;
7
- typedef CwiseUnaryOp<internal::scalar_rsqrt_op<Scalar>, const Derived> RsqrtReturnType;
8
- typedef CwiseUnaryOp<internal::scalar_sign_op<Scalar>, const Derived> SignReturnType;
9
- typedef CwiseUnaryOp<internal::scalar_inverse_op<Scalar>, const Derived> InverseReturnType;
10
- typedef CwiseUnaryOp<internal::scalar_boolean_not_op<Scalar>, const Derived> BooleanNotReturnType;
11
-
12
- typedef CwiseUnaryOp<internal::scalar_exp_op<Scalar>, const Derived> ExpReturnType;
13
- typedef CwiseUnaryOp<internal::scalar_expm1_op<Scalar>, const Derived> Expm1ReturnType;
14
- typedef CwiseUnaryOp<internal::scalar_log_op<Scalar>, const Derived> LogReturnType;
15
- typedef CwiseUnaryOp<internal::scalar_log1p_op<Scalar>, const Derived> Log1pReturnType;
16
- typedef CwiseUnaryOp<internal::scalar_log10_op<Scalar>, const Derived> Log10ReturnType;
17
- typedef CwiseUnaryOp<internal::scalar_log2_op<Scalar>, const Derived> Log2ReturnType;
18
- typedef CwiseUnaryOp<internal::scalar_cos_op<Scalar>, const Derived> CosReturnType;
19
- typedef CwiseUnaryOp<internal::scalar_sin_op<Scalar>, const Derived> SinReturnType;
20
- typedef CwiseUnaryOp<internal::scalar_tan_op<Scalar>, const Derived> TanReturnType;
21
- typedef CwiseUnaryOp<internal::scalar_acos_op<Scalar>, const Derived> AcosReturnType;
22
- typedef CwiseUnaryOp<internal::scalar_asin_op<Scalar>, const Derived> AsinReturnType;
23
- typedef CwiseUnaryOp<internal::scalar_atan_op<Scalar>, const Derived> AtanReturnType;
24
- typedef CwiseUnaryOp<internal::scalar_tanh_op<Scalar>, const Derived> TanhReturnType;
25
- typedef CwiseUnaryOp<internal::scalar_logistic_op<Scalar>, const Derived> LogisticReturnType;
26
- typedef CwiseUnaryOp<internal::scalar_sinh_op<Scalar>, const Derived> SinhReturnType;
27
- #if EIGEN_HAS_CXX11_MATH
28
- typedef CwiseUnaryOp<internal::scalar_atanh_op<Scalar>, const Derived> AtanhReturnType;
29
- typedef CwiseUnaryOp<internal::scalar_asinh_op<Scalar>, const Derived> AsinhReturnType;
30
- typedef CwiseUnaryOp<internal::scalar_acosh_op<Scalar>, const Derived> AcoshReturnType;
31
- #endif
32
- typedef CwiseUnaryOp<internal::scalar_cosh_op<Scalar>, const Derived> CoshReturnType;
33
- typedef CwiseUnaryOp<internal::scalar_square_op<Scalar>, const Derived> SquareReturnType;
34
- typedef CwiseUnaryOp<internal::scalar_cube_op<Scalar>, const Derived> CubeReturnType;
35
- typedef CwiseUnaryOp<internal::scalar_round_op<Scalar>, const Derived> RoundReturnType;
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- typedef CwiseUnaryOp<internal::scalar_rint_op<Scalar>, const Derived> RintReturnType;
37
- typedef CwiseUnaryOp<internal::scalar_floor_op<Scalar>, const Derived> FloorReturnType;
38
- typedef CwiseUnaryOp<internal::scalar_ceil_op<Scalar>, const Derived> CeilReturnType;
39
- typedef CwiseUnaryOp<internal::scalar_isnan_op<Scalar>, const Derived> IsNaNReturnType;
40
- typedef CwiseUnaryOp<internal::scalar_isinf_op<Scalar>, const Derived> IsInfReturnType;
41
- typedef CwiseUnaryOp<internal::scalar_isfinite_op<Scalar>, const Derived> IsFiniteReturnType;
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-
43
- /** \returns an expression of the coefficient-wise absolute value of \c *this
44
- *
45
- * Example: \include Cwise_abs.cpp
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- * Output: \verbinclude Cwise_abs.out
47
- *
48
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_abs">Math functions</a>, abs2()
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- */
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- EIGEN_DEVICE_FUNC
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- EIGEN_STRONG_INLINE const AbsReturnType
52
- abs() const
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- {
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- return AbsReturnType(derived());
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- }
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-
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- /** \returns an expression of the coefficient-wise phase angle of \c *this
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- *
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- * Example: \include Cwise_arg.cpp
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- * Output: \verbinclude Cwise_arg.out
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- *
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- * \sa abs()
63
- */
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- EIGEN_DEVICE_FUNC
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- EIGEN_STRONG_INLINE const ArgReturnType
66
- arg() const
67
- {
68
- return ArgReturnType(derived());
69
- }
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-
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- /** \returns an expression of the coefficient-wise squared absolute value of \c *this
72
- *
73
- * Example: \include Cwise_abs2.cpp
74
- * Output: \verbinclude Cwise_abs2.out
75
- *
76
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_abs2">Math functions</a>, abs(), square()
77
- */
78
- EIGEN_DEVICE_FUNC
79
- EIGEN_STRONG_INLINE const Abs2ReturnType
80
- abs2() const
81
- {
82
- return Abs2ReturnType(derived());
83
- }
84
-
85
- /** \returns an expression of the coefficient-wise exponential of *this.
86
- *
87
- * This function computes the coefficient-wise exponential. The function MatrixBase::exp() in the
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- * unsupported module MatrixFunctions computes the matrix exponential.
89
- *
90
- * Example: \include Cwise_exp.cpp
91
- * Output: \verbinclude Cwise_exp.out
92
- *
93
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_exp">Math functions</a>, pow(), log(), sin(), cos()
94
- */
95
- EIGEN_DEVICE_FUNC
96
- inline const ExpReturnType
97
- exp() const
98
- {
99
- return ExpReturnType(derived());
100
- }
101
-
102
- /** \returns an expression of the coefficient-wise exponential of *this minus 1.
103
- *
104
- * In exact arithmetic, \c x.expm1() is equivalent to \c x.exp() - 1,
105
- * however, with finite precision, this function is much more accurate when \c x is close to zero.
106
- *
107
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_expm1">Math functions</a>, exp()
108
- */
109
- EIGEN_DEVICE_FUNC
110
- inline const Expm1ReturnType
111
- expm1() const
112
- {
113
- return Expm1ReturnType(derived());
114
- }
115
-
116
- /** \returns an expression of the coefficient-wise logarithm of *this.
117
- *
118
- * This function computes the coefficient-wise logarithm. The function MatrixBase::log() in the
119
- * unsupported module MatrixFunctions computes the matrix logarithm.
120
- *
121
- * Example: \include Cwise_log.cpp
122
- * Output: \verbinclude Cwise_log.out
123
- *
124
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_log">Math functions</a>, log()
125
- */
126
- EIGEN_DEVICE_FUNC
127
- inline const LogReturnType
128
- log() const
129
- {
130
- return LogReturnType(derived());
131
- }
132
-
133
- /** \returns an expression of the coefficient-wise logarithm of 1 plus \c *this.
134
- *
135
- * In exact arithmetic, \c x.log() is equivalent to \c (x+1).log(),
136
- * however, with finite precision, this function is much more accurate when \c x is close to zero.
137
- *
138
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_log1p">Math functions</a>, log()
139
- */
140
- EIGEN_DEVICE_FUNC
141
- inline const Log1pReturnType
142
- log1p() const
143
- {
144
- return Log1pReturnType(derived());
145
- }
146
-
147
- /** \returns an expression of the coefficient-wise base-10 logarithm of *this.
148
- *
149
- * This function computes the coefficient-wise base-10 logarithm.
150
- *
151
- * Example: \include Cwise_log10.cpp
152
- * Output: \verbinclude Cwise_log10.out
153
- *
154
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_log10">Math functions</a>, log()
155
- */
156
- EIGEN_DEVICE_FUNC
157
- inline const Log10ReturnType
158
- log10() const
159
- {
160
- return Log10ReturnType(derived());
161
- }
162
-
163
- /** \returns an expression of the coefficient-wise base-2 logarithm of *this.
164
- *
165
- * This function computes the coefficient-wise base-2 logarithm.
166
- *
167
- */
168
- EIGEN_DEVICE_FUNC
169
- inline const Log2ReturnType
170
- log2() const
171
- {
172
- return Log2ReturnType(derived());
173
- }
174
-
175
- /** \returns an expression of the coefficient-wise square root of *this.
176
- *
177
- * This function computes the coefficient-wise square root. The function MatrixBase::sqrt() in the
178
- * unsupported module MatrixFunctions computes the matrix square root.
179
- *
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- * Example: \include Cwise_sqrt.cpp
181
- * Output: \verbinclude Cwise_sqrt.out
182
- *
183
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_sqrt">Math functions</a>, pow(), square()
184
- */
185
- EIGEN_DEVICE_FUNC
186
- inline const SqrtReturnType
187
- sqrt() const
188
- {
189
- return SqrtReturnType(derived());
190
- }
191
-
192
- /** \returns an expression of the coefficient-wise inverse square root of *this.
193
- *
194
- * This function computes the coefficient-wise inverse square root.
195
- *
196
- * Example: \include Cwise_sqrt.cpp
197
- * Output: \verbinclude Cwise_sqrt.out
198
- *
199
- * \sa pow(), square()
200
- */
201
- EIGEN_DEVICE_FUNC
202
- inline const RsqrtReturnType
203
- rsqrt() const
204
- {
205
- return RsqrtReturnType(derived());
206
- }
207
-
208
- /** \returns an expression of the coefficient-wise signum of *this.
209
- *
210
- * This function computes the coefficient-wise signum.
211
- *
212
- * Example: \include Cwise_sign.cpp
213
- * Output: \verbinclude Cwise_sign.out
214
- *
215
- * \sa pow(), square()
216
- */
217
- EIGEN_DEVICE_FUNC
218
- inline const SignReturnType
219
- sign() const
220
- {
221
- return SignReturnType(derived());
222
- }
223
-
224
-
225
- /** \returns an expression of the coefficient-wise cosine of *this.
226
- *
227
- * This function computes the coefficient-wise cosine. The function MatrixBase::cos() in the
228
- * unsupported module MatrixFunctions computes the matrix cosine.
229
- *
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- * Example: \include Cwise_cos.cpp
231
- * Output: \verbinclude Cwise_cos.out
232
- *
233
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_cos">Math functions</a>, sin(), acos()
234
- */
235
- EIGEN_DEVICE_FUNC
236
- inline const CosReturnType
237
- cos() const
238
- {
239
- return CosReturnType(derived());
240
- }
241
-
242
-
243
- /** \returns an expression of the coefficient-wise sine of *this.
244
- *
245
- * This function computes the coefficient-wise sine. The function MatrixBase::sin() in the
246
- * unsupported module MatrixFunctions computes the matrix sine.
247
- *
248
- * Example: \include Cwise_sin.cpp
249
- * Output: \verbinclude Cwise_sin.out
250
- *
251
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_sin">Math functions</a>, cos(), asin()
252
- */
253
- EIGEN_DEVICE_FUNC
254
- inline const SinReturnType
255
- sin() const
256
- {
257
- return SinReturnType(derived());
258
- }
259
-
260
- /** \returns an expression of the coefficient-wise tan of *this.
261
- *
262
- * Example: \include Cwise_tan.cpp
263
- * Output: \verbinclude Cwise_tan.out
264
- *
265
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_tan">Math functions</a>, cos(), sin()
266
- */
267
- EIGEN_DEVICE_FUNC
268
- inline const TanReturnType
269
- tan() const
270
- {
271
- return TanReturnType(derived());
272
- }
273
-
274
- /** \returns an expression of the coefficient-wise arc tan of *this.
275
- *
276
- * Example: \include Cwise_atan.cpp
277
- * Output: \verbinclude Cwise_atan.out
278
- *
279
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_atan">Math functions</a>, tan(), asin(), acos()
280
- */
281
- EIGEN_DEVICE_FUNC
282
- inline const AtanReturnType
283
- atan() const
284
- {
285
- return AtanReturnType(derived());
286
- }
287
-
288
- /** \returns an expression of the coefficient-wise arc cosine of *this.
289
- *
290
- * Example: \include Cwise_acos.cpp
291
- * Output: \verbinclude Cwise_acos.out
292
- *
293
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_acos">Math functions</a>, cos(), asin()
294
- */
295
- EIGEN_DEVICE_FUNC
296
- inline const AcosReturnType
297
- acos() const
298
- {
299
- return AcosReturnType(derived());
300
- }
301
-
302
- /** \returns an expression of the coefficient-wise arc sine of *this.
303
- *
304
- * Example: \include Cwise_asin.cpp
305
- * Output: \verbinclude Cwise_asin.out
306
- *
307
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_asin">Math functions</a>, sin(), acos()
308
- */
309
- EIGEN_DEVICE_FUNC
310
- inline const AsinReturnType
311
- asin() const
312
- {
313
- return AsinReturnType(derived());
314
- }
315
-
316
- /** \returns an expression of the coefficient-wise hyperbolic tan of *this.
317
- *
318
- * Example: \include Cwise_tanh.cpp
319
- * Output: \verbinclude Cwise_tanh.out
320
- *
321
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_tanh">Math functions</a>, tan(), sinh(), cosh()
322
- */
323
- EIGEN_DEVICE_FUNC
324
- inline const TanhReturnType
325
- tanh() const
326
- {
327
- return TanhReturnType(derived());
328
- }
329
-
330
- /** \returns an expression of the coefficient-wise hyperbolic sin of *this.
331
- *
332
- * Example: \include Cwise_sinh.cpp
333
- * Output: \verbinclude Cwise_sinh.out
334
- *
335
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_sinh">Math functions</a>, sin(), tanh(), cosh()
336
- */
337
- EIGEN_DEVICE_FUNC
338
- inline const SinhReturnType
339
- sinh() const
340
- {
341
- return SinhReturnType(derived());
342
- }
343
-
344
- /** \returns an expression of the coefficient-wise hyperbolic cos of *this.
345
- *
346
- * Example: \include Cwise_cosh.cpp
347
- * Output: \verbinclude Cwise_cosh.out
348
- *
349
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_cosh">Math functions</a>, tanh(), sinh(), cosh()
350
- */
351
- EIGEN_DEVICE_FUNC
352
- inline const CoshReturnType
353
- cosh() const
354
- {
355
- return CoshReturnType(derived());
356
- }
357
-
358
- #if EIGEN_HAS_CXX11_MATH
359
- /** \returns an expression of the coefficient-wise inverse hyperbolic tan of *this.
360
- *
361
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_atanh">Math functions</a>, atanh(), asinh(), acosh()
362
- */
363
- EIGEN_DEVICE_FUNC
364
- inline const AtanhReturnType
365
- atanh() const
366
- {
367
- return AtanhReturnType(derived());
368
- }
369
-
370
- /** \returns an expression of the coefficient-wise inverse hyperbolic sin of *this.
371
- *
372
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_asinh">Math functions</a>, atanh(), asinh(), acosh()
373
- */
374
- EIGEN_DEVICE_FUNC
375
- inline const AsinhReturnType
376
- asinh() const
377
- {
378
- return AsinhReturnType(derived());
379
- }
380
-
381
- /** \returns an expression of the coefficient-wise inverse hyperbolic cos of *this.
382
- *
383
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_acosh">Math functions</a>, atanh(), asinh(), acosh()
384
- */
385
- EIGEN_DEVICE_FUNC
386
- inline const AcoshReturnType
387
- acosh() const
388
- {
389
- return AcoshReturnType(derived());
390
- }
391
- #endif
392
-
393
- /** \returns an expression of the coefficient-wise logistic of *this.
394
- */
395
- EIGEN_DEVICE_FUNC
396
- inline const LogisticReturnType
397
- logistic() const
398
- {
399
- return LogisticReturnType(derived());
400
- }
401
-
402
- /** \returns an expression of the coefficient-wise inverse of *this.
403
- *
404
- * Example: \include Cwise_inverse.cpp
405
- * Output: \verbinclude Cwise_inverse.out
406
- *
407
- * \sa operator/(), operator*()
408
- */
409
- EIGEN_DEVICE_FUNC
410
- inline const InverseReturnType
411
- inverse() const
412
- {
413
- return InverseReturnType(derived());
414
- }
415
-
416
- /** \returns an expression of the coefficient-wise square of *this.
417
- *
418
- * Example: \include Cwise_square.cpp
419
- * Output: \verbinclude Cwise_square.out
420
- *
421
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_squareE">Math functions</a>, abs2(), cube(), pow()
422
- */
423
- EIGEN_DEVICE_FUNC
424
- inline const SquareReturnType
425
- square() const
426
- {
427
- return SquareReturnType(derived());
428
- }
429
-
430
- /** \returns an expression of the coefficient-wise cube of *this.
431
- *
432
- * Example: \include Cwise_cube.cpp
433
- * Output: \verbinclude Cwise_cube.out
434
- *
435
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_cube">Math functions</a>, square(), pow()
436
- */
437
- EIGEN_DEVICE_FUNC
438
- inline const CubeReturnType
439
- cube() const
440
- {
441
- return CubeReturnType(derived());
442
- }
443
-
444
- /** \returns an expression of the coefficient-wise rint of *this.
445
- *
446
- * Example: \include Cwise_rint.cpp
447
- * Output: \verbinclude Cwise_rint.out
448
- *
449
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_rint">Math functions</a>, ceil(), floor()
450
- */
451
- EIGEN_DEVICE_FUNC
452
- inline const RintReturnType
453
- rint() const
454
- {
455
- return RintReturnType(derived());
456
- }
457
-
458
- /** \returns an expression of the coefficient-wise round of *this.
459
- *
460
- * Example: \include Cwise_round.cpp
461
- * Output: \verbinclude Cwise_round.out
462
- *
463
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_round">Math functions</a>, ceil(), floor()
464
- */
465
- EIGEN_DEVICE_FUNC
466
- inline const RoundReturnType
467
- round() const
468
- {
469
- return RoundReturnType(derived());
470
- }
471
-
472
- /** \returns an expression of the coefficient-wise floor of *this.
473
- *
474
- * Example: \include Cwise_floor.cpp
475
- * Output: \verbinclude Cwise_floor.out
476
- *
477
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_floor">Math functions</a>, ceil(), round()
478
- */
479
- EIGEN_DEVICE_FUNC
480
- inline const FloorReturnType
481
- floor() const
482
- {
483
- return FloorReturnType(derived());
484
- }
485
-
486
- /** \returns an expression of the coefficient-wise ceil of *this.
487
- *
488
- * Example: \include Cwise_ceil.cpp
489
- * Output: \verbinclude Cwise_ceil.out
490
- *
491
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_ceil">Math functions</a>, floor(), round()
492
- */
493
- EIGEN_DEVICE_FUNC
494
- inline const CeilReturnType
495
- ceil() const
496
- {
497
- return CeilReturnType(derived());
498
- }
499
-
500
- template<int N> struct ShiftRightXpr {
501
- typedef CwiseUnaryOp<internal::scalar_shift_right_op<Scalar, N>, const Derived> Type;
502
- };
503
-
504
- /** \returns an expression of \c *this with the \a Scalar type arithmetically
505
- * shifted right by \a N bit positions.
506
- *
507
- * The template parameter \a N specifies the number of bit positions to shift.
508
- *
509
- * \sa shiftLeft()
510
- */
511
- template<int N>
512
- EIGEN_DEVICE_FUNC
513
- typename ShiftRightXpr<N>::Type
514
- shiftRight() const
515
- {
516
- return typename ShiftRightXpr<N>::Type(derived());
517
- }
518
-
519
-
520
- template<int N> struct ShiftLeftXpr {
521
- typedef CwiseUnaryOp<internal::scalar_shift_left_op<Scalar, N>, const Derived> Type;
522
- };
523
-
524
- /** \returns an expression of \c *this with the \a Scalar type logically
525
- * shifted left by \a N bit positions.
526
- *
527
- * The template parameter \a N specifies the number of bit positions to shift.
528
- *
529
- * \sa shiftRight()
530
- */
531
- template<int N>
532
- EIGEN_DEVICE_FUNC
533
- typename ShiftLeftXpr<N>::Type
534
- shiftLeft() const
535
- {
536
- return typename ShiftLeftXpr<N>::Type(derived());
537
- }
538
-
539
- /** \returns an expression of the coefficient-wise isnan of *this.
540
- *
541
- * Example: \include Cwise_isNaN.cpp
542
- * Output: \verbinclude Cwise_isNaN.out
543
- *
544
- * \sa isfinite(), isinf()
545
- */
546
- EIGEN_DEVICE_FUNC
547
- inline const IsNaNReturnType
548
- isNaN() const
549
- {
550
- return IsNaNReturnType(derived());
551
- }
552
-
553
- /** \returns an expression of the coefficient-wise isinf of *this.
554
- *
555
- * Example: \include Cwise_isInf.cpp
556
- * Output: \verbinclude Cwise_isInf.out
557
- *
558
- * \sa isnan(), isfinite()
559
- */
560
- EIGEN_DEVICE_FUNC
561
- inline const IsInfReturnType
562
- isInf() const
563
- {
564
- return IsInfReturnType(derived());
565
- }
566
-
567
- /** \returns an expression of the coefficient-wise isfinite of *this.
568
- *
569
- * Example: \include Cwise_isFinite.cpp
570
- * Output: \verbinclude Cwise_isFinite.out
571
- *
572
- * \sa isnan(), isinf()
573
- */
574
- EIGEN_DEVICE_FUNC
575
- inline const IsFiniteReturnType
576
- isFinite() const
577
- {
578
- return IsFiniteReturnType(derived());
579
- }
580
-
581
- /** \returns an expression of the coefficient-wise ! operator of *this
582
- *
583
- * \warning this operator is for expression of bool only.
584
- *
585
- * Example: \include Cwise_boolean_not.cpp
586
- * Output: \verbinclude Cwise_boolean_not.out
587
- *
588
- * \sa operator!=()
589
- */
590
- EIGEN_DEVICE_FUNC
591
- inline const BooleanNotReturnType
592
- operator!() const
593
- {
594
- EIGEN_STATIC_ASSERT((internal::is_same<bool,Scalar>::value),
595
- THIS_METHOD_IS_ONLY_FOR_EXPRESSIONS_OF_BOOL);
596
- return BooleanNotReturnType(derived());
597
- }
598
-
599
-
600
- // --- SpecialFunctions module ---
601
-
602
- typedef CwiseUnaryOp<internal::scalar_lgamma_op<Scalar>, const Derived> LgammaReturnType;
603
- typedef CwiseUnaryOp<internal::scalar_digamma_op<Scalar>, const Derived> DigammaReturnType;
604
- typedef CwiseUnaryOp<internal::scalar_erf_op<Scalar>, const Derived> ErfReturnType;
605
- typedef CwiseUnaryOp<internal::scalar_erfc_op<Scalar>, const Derived> ErfcReturnType;
606
- typedef CwiseUnaryOp<internal::scalar_ndtri_op<Scalar>, const Derived> NdtriReturnType;
607
-
608
- /** \cpp11 \returns an expression of the coefficient-wise ln(|gamma(*this)|).
609
- *
610
- * \specialfunctions_module
611
- *
612
- * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
613
- * or float/double in non c++11 mode, the user has to provide implementations of lgamma(T) for any scalar
614
- * type T to be supported.
615
- *
616
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_lgamma">Math functions</a>, digamma()
617
- */
618
- EIGEN_DEVICE_FUNC
619
- inline const LgammaReturnType
620
- lgamma() const
621
- {
622
- return LgammaReturnType(derived());
623
- }
624
-
625
- /** \returns an expression of the coefficient-wise digamma (psi, derivative of lgamma).
626
- *
627
- * \specialfunctions_module
628
- *
629
- * \note This function supports only float and double scalar types. To support other scalar types,
630
- * the user has to provide implementations of digamma(T) for any scalar
631
- * type T to be supported.
632
- *
633
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_digamma">Math functions</a>, Eigen::digamma(), Eigen::polygamma(), lgamma()
634
- */
635
- EIGEN_DEVICE_FUNC
636
- inline const DigammaReturnType
637
- digamma() const
638
- {
639
- return DigammaReturnType(derived());
640
- }
641
-
642
- /** \cpp11 \returns an expression of the coefficient-wise Gauss error
643
- * function of *this.
644
- *
645
- * \specialfunctions_module
646
- *
647
- * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
648
- * or float/double in non c++11 mode, the user has to provide implementations of erf(T) for any scalar
649
- * type T to be supported.
650
- *
651
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_erf">Math functions</a>, erfc()
652
- */
653
- EIGEN_DEVICE_FUNC
654
- inline const ErfReturnType
655
- erf() const
656
- {
657
- return ErfReturnType(derived());
658
- }
659
-
660
- /** \cpp11 \returns an expression of the coefficient-wise Complementary error
661
- * function of *this.
662
- *
663
- * \specialfunctions_module
664
- *
665
- * \note This function supports only float and double scalar types in c++11 mode. To support other scalar types,
666
- * or float/double in non c++11 mode, the user has to provide implementations of erfc(T) for any scalar
667
- * type T to be supported.
668
- *
669
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_erfc">Math functions</a>, erf()
670
- */
671
- EIGEN_DEVICE_FUNC
672
- inline const ErfcReturnType
673
- erfc() const
674
- {
675
- return ErfcReturnType(derived());
676
- }
677
-
678
- /** \returns an expression of the coefficient-wise inverse of the CDF of the Normal distribution function
679
- * function of *this.
680
- *
681
- * \specialfunctions_module
682
- *
683
- * In other words, considering `x = ndtri(y)`, it returns the argument, x, for which the area under the
684
- * Gaussian probability density function (integrated from minus infinity to x) is equal to y.
685
- *
686
- * \note This function supports only float and double scalar types. To support other scalar types,
687
- * the user has to provide implementations of ndtri(T) for any scalar type T to be supported.
688
- *
689
- * \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_ndtri">Math functions</a>
690
- */
691
- EIGEN_DEVICE_FUNC
692
- inline const NdtriReturnType
693
- ndtri() const
694
- {
695
- return NdtriReturnType(derived());
696
- }