sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +157 -157
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-39-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-39-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +157 -157
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-39-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +157 -157
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-39-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +157 -157
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-39-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +157 -157
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-39-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +157 -157
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-39-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
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  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,1102 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorReshaping
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor reshaping class.
19
- *
20
- *
21
- */
22
- namespace internal {
23
- template<typename NewDimensions, typename XprType>
24
- struct traits<TensorReshapingOp<NewDimensions, XprType> > : public traits<XprType>
25
- {
26
- typedef typename XprType::Scalar Scalar;
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = array_size<NewDimensions>::value;
33
- static const int Layout = XprTraits::Layout;
34
- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
37
- template<typename NewDimensions, typename XprType>
38
- struct eval<TensorReshapingOp<NewDimensions, XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorReshapingOp<NewDimensions, XprType>EIGEN_DEVICE_REF type;
41
- };
42
-
43
- template<typename NewDimensions, typename XprType>
44
- struct nested<TensorReshapingOp<NewDimensions, XprType>, 1, typename eval<TensorReshapingOp<NewDimensions, XprType> >::type>
45
- {
46
- typedef TensorReshapingOp<NewDimensions, XprType> type;
47
- };
48
-
49
- } // end namespace internal
50
-
51
-
52
-
53
- template<typename NewDimensions, typename XprType>
54
- class TensorReshapingOp : public TensorBase<TensorReshapingOp<NewDimensions, XprType>, WriteAccessors>
55
- {
56
- public:
57
- typedef TensorBase<TensorReshapingOp<NewDimensions, XprType>, WriteAccessors> Base;
58
- typedef typename Eigen::internal::traits<TensorReshapingOp>::Scalar Scalar;
59
- typedef typename internal::remove_const<typename XprType::CoeffReturnType>::type CoeffReturnType;
60
- typedef typename Eigen::internal::nested<TensorReshapingOp>::type Nested;
61
- typedef typename Eigen::internal::traits<TensorReshapingOp>::StorageKind StorageKind;
62
- typedef typename Eigen::internal::traits<TensorReshapingOp>::Index Index;
63
-
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorReshapingOp(const XprType& expr, const NewDimensions& dims)
65
- : m_xpr(expr), m_dims(dims) {}
66
-
67
- EIGEN_DEVICE_FUNC
68
- const NewDimensions& dimensions() const { return m_dims; }
69
-
70
- EIGEN_DEVICE_FUNC
71
- const typename internal::remove_all<typename XprType::Nested>::type&
72
- expression() const { return m_xpr; }
73
-
74
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorReshapingOp)
75
-
76
- protected:
77
- typename XprType::Nested m_xpr;
78
- const NewDimensions m_dims;
79
- };
80
-
81
-
82
- // Eval as rvalue
83
- template<typename NewDimensions, typename ArgType, typename Device>
84
- struct TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device>
85
- {
86
- typedef TensorReshapingOp<NewDimensions, ArgType> XprType;
87
- typedef NewDimensions Dimensions;
88
-
89
- typedef typename XprType::Index Index;
90
- typedef typename XprType::Scalar Scalar;
91
- typedef typename XprType::CoeffReturnType CoeffReturnType;
92
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
93
- typedef StorageMemory<CoeffReturnType, Device> Storage;
94
- typedef typename Storage::Type EvaluatorPointerType;
95
- typedef StorageMemory<typename internal::remove_const<CoeffReturnType>::type, Device> ConstCastStorage;
96
-
97
- static const int NumOutputDims = internal::array_size<Dimensions>::value;
98
- static const int NumInputDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
99
-
100
- enum ReshapingKind {
101
- // We do not use layout information to determine reshaping kind.
102
- // Depending on the layout `N` can be inner or outer dimension.
103
- OneByN = 0, // expr.reshape(1, N)
104
- NByOne = 1, // expr.reshape(N, 1)
105
- Runtime = 2 // Reshape dimensions are dynamic (specified at runtime).
106
- };
107
-
108
- // clang-format off
109
- static const ReshapingKind kind =
110
- #if defined(EIGEN_HAS_INDEX_LIST)
111
- (NumOutputDims == 2 && internal::index_statically_eq<NewDimensions>(/*index=*/0, /*value=*/1)) ? OneByN
112
- : (NumOutputDims == 2 && internal::index_statically_eq<NewDimensions>(/*index=*/1, /*value=*/1)) ? NByOne
113
- : Runtime;
114
- #else
115
- Runtime;
116
- #endif
117
- // clang-format on
118
-
119
- enum {
120
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
121
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
122
- // For trivial reshapes with raw access to underlying data we will provide
123
- // zero overhead block access.
124
- // TODO(ezhulenev): Consider adding block access without raw access?
125
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess &&
126
- NumInputDims > 0 && NumOutputDims > 0,
127
- PreferBlockAccess = false,
128
- Layout = TensorEvaluator<ArgType, Device>::Layout,
129
- CoordAccess = false, // to be implemented
130
- RawAccess = TensorEvaluator<ArgType, Device>::RawAccess
131
- };
132
-
133
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
134
-
135
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
136
- typedef internal::TensorBlockDescriptor<NumOutputDims, Index> TensorBlockDesc;
137
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
138
-
139
- typedef
140
- typename internal::TensorMaterializedBlock<ScalarNoConst, NumOutputDims,
141
- Layout, Index>
142
- TensorBlock;
143
- //===--------------------------------------------------------------------===//
144
-
145
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
146
- : m_impl(op.expression(), device), m_dimensions(op.dimensions())
147
- {
148
- // The total size of the reshaped tensor must be equal to the total size
149
- // of the input tensor.
150
- eigen_assert(internal::array_prod(m_impl.dimensions()) == internal::array_prod(op.dimensions()));
151
- }
152
-
153
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
154
-
155
- #ifdef EIGEN_USE_THREADS
156
- template <typename EvalSubExprsCallback>
157
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
158
- EvaluatorPointerType data, EvalSubExprsCallback done) {
159
- m_impl.evalSubExprsIfNeededAsync(data, std::move(done));
160
- }
161
- #endif
162
-
163
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
164
- return m_impl.evalSubExprsIfNeeded(data);
165
- }
166
- EIGEN_STRONG_INLINE void cleanup() {
167
- m_impl.cleanup();
168
- }
169
-
170
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
171
- {
172
- return m_impl.coeff(index);
173
- }
174
-
175
- template<int LoadMode>
176
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
177
- {
178
- return m_impl.template packet<LoadMode>(index);
179
- }
180
-
181
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
182
- return m_impl.costPerCoeff(vectorized);
183
- }
184
-
185
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
186
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
187
- return internal::TensorBlockResourceRequirements::any();
188
- }
189
-
190
- // required in block(OutputTensorBlock* output_block) const
191
- // For C++03 compatibility this must be defined outside the method
192
- struct BlockIteratorState {
193
- Index stride;
194
- Index span;
195
- Index size;
196
- Index count;
197
- };
198
-
199
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
200
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
201
- bool /*root_of_expr_ast*/ = false) const {
202
- eigen_assert(m_impl.data() != NULL);
203
- eigen_assert((kind == Runtime) ||
204
- (kind == OneByN && desc.dimensions()[0] == 1) ||
205
- (kind == NByOne && desc.dimensions()[1] == 1));
206
-
207
- if (kind == OneByN || kind == NByOne) {
208
- // We can guarantee at compile time that block is just a contiguous slice
209
- // of the underlying expression memory buffer.
210
- return TensorBlock(internal::TensorBlockKind::kView,
211
- m_impl.data() + desc.offset(), desc.dimensions());
212
- } else {
213
- // This will do additional runtime checks, and in the end it might be also
214
- // a view, or it might be a block materialized in the temporary buffer.
215
- return TensorBlock::materialize(m_impl.data(), m_dimensions, desc,
216
- scratch);
217
- }
218
- }
219
-
220
- EIGEN_DEVICE_FUNC typename Storage::Type data() const {
221
- return constCast(m_impl.data());
222
- }
223
-
224
- EIGEN_DEVICE_FUNC const TensorEvaluator<ArgType, Device>& impl() const { return m_impl; }
225
-
226
- #ifdef EIGEN_USE_SYCL
227
- // binding placeholder accessors to a command group handler for SYCL
228
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
229
- m_impl.bind(cgh);
230
- }
231
- #endif
232
- protected:
233
- TensorEvaluator<ArgType, Device> m_impl;
234
- NewDimensions m_dimensions;
235
- };
236
-
237
-
238
- // Eval as lvalue
239
- template<typename NewDimensions, typename ArgType, typename Device>
240
- struct TensorEvaluator<TensorReshapingOp<NewDimensions, ArgType>, Device>
241
- : public TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device>
242
-
243
- {
244
- typedef TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device> Base;
245
- typedef TensorReshapingOp<NewDimensions, ArgType> XprType;
246
- typedef NewDimensions Dimensions;
247
-
248
- enum {
249
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
250
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
251
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess,
252
- PreferBlockAccess = false,
253
- Layout = TensorEvaluator<ArgType, Device>::Layout,
254
- CoordAccess = false, // to be implemented
255
- RawAccess = TensorEvaluator<ArgType, Device>::RawAccess
256
- };
257
-
258
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
259
- : Base(op, device)
260
- { }
261
-
262
- typedef typename XprType::Index Index;
263
- typedef typename XprType::Scalar Scalar;
264
- typedef typename XprType::CoeffReturnType CoeffReturnType;
265
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
266
-
267
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
268
- typedef internal::TensorBlockDescriptor<TensorEvaluator::NumOutputDims, Index>
269
- TensorBlockDesc;
270
- //===--------------------------------------------------------------------===//
271
-
272
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
273
- {
274
- return this->m_impl.coeffRef(index);
275
- }
276
-
277
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
278
- void writePacket(Index index, const PacketReturnType& x)
279
- {
280
- this->m_impl.template writePacket<StoreMode>(index, x);
281
- }
282
-
283
- template <typename TensorBlock>
284
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
285
- const TensorBlockDesc& desc, const TensorBlock& block) {
286
- assert(this->m_impl.data() != NULL);
287
-
288
- typedef typename TensorBlock::XprType TensorBlockExpr;
289
- typedef internal::TensorBlockAssignment<
290
- Scalar, TensorEvaluator::NumOutputDims, TensorBlockExpr, Index>
291
- TensorBlockAssign;
292
-
293
- TensorBlockAssign::Run(
294
- TensorBlockAssign::target(desc.dimensions(),
295
- internal::strides<Layout>(this->dimensions()),
296
- this->m_impl.data(), desc.offset()),
297
- block.expr());
298
- }
299
- };
300
-
301
-
302
- /** \class TensorSlicing
303
- * \ingroup CXX11_Tensor_Module
304
- *
305
- * \brief Tensor slicing class.
306
- *
307
- *
308
- */
309
- namespace internal {
310
- template<typename StartIndices, typename Sizes, typename XprType>
311
- struct traits<TensorSlicingOp<StartIndices, Sizes, XprType> > : public traits<XprType>
312
- {
313
- typedef typename XprType::Scalar Scalar;
314
- typedef traits<XprType> XprTraits;
315
- typedef typename XprTraits::StorageKind StorageKind;
316
- typedef typename XprTraits::Index Index;
317
- typedef typename XprType::Nested Nested;
318
- typedef typename remove_reference<Nested>::type _Nested;
319
- static const int NumDimensions = array_size<StartIndices>::value;
320
- static const int Layout = XprTraits::Layout;
321
- typedef typename XprTraits::PointerType PointerType;
322
- };
323
-
324
- template<typename StartIndices, typename Sizes, typename XprType>
325
- struct eval<TensorSlicingOp<StartIndices, Sizes, XprType>, Eigen::Dense>
326
- {
327
- typedef const TensorSlicingOp<StartIndices, Sizes, XprType>EIGEN_DEVICE_REF type;
328
- };
329
-
330
- template<typename StartIndices, typename Sizes, typename XprType>
331
- struct nested<TensorSlicingOp<StartIndices, Sizes, XprType>, 1, typename eval<TensorSlicingOp<StartIndices, Sizes, XprType> >::type>
332
- {
333
- typedef TensorSlicingOp<StartIndices, Sizes, XprType> type;
334
- };
335
-
336
- } // end namespace internal
337
-
338
-
339
-
340
- template<typename StartIndices, typename Sizes, typename XprType>
341
- class TensorSlicingOp : public TensorBase<TensorSlicingOp<StartIndices, Sizes, XprType> >
342
- {
343
- public:
344
- typedef TensorBase<TensorSlicingOp<StartIndices, Sizes, XprType> > Base;
345
- typedef typename Eigen::internal::traits<TensorSlicingOp>::Scalar Scalar;
346
- typedef typename XprType::CoeffReturnType CoeffReturnType;
347
- typedef typename Eigen::internal::nested<TensorSlicingOp>::type Nested;
348
- typedef typename Eigen::internal::traits<TensorSlicingOp>::StorageKind StorageKind;
349
- typedef typename Eigen::internal::traits<TensorSlicingOp>::Index Index;
350
-
351
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorSlicingOp(const XprType& expr, const StartIndices& indices, const Sizes& sizes)
352
- : m_xpr(expr), m_indices(indices), m_sizes(sizes) {}
353
-
354
- EIGEN_DEVICE_FUNC
355
- const StartIndices& startIndices() const { return m_indices; }
356
- EIGEN_DEVICE_FUNC
357
- const Sizes& sizes() const { return m_sizes; }
358
-
359
- EIGEN_DEVICE_FUNC
360
- const typename internal::remove_all<typename XprType::Nested>::type&
361
- expression() const { return m_xpr; }
362
-
363
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorSlicingOp)
364
-
365
- protected:
366
- typename XprType::Nested m_xpr;
367
- const StartIndices m_indices;
368
- const Sizes m_sizes;
369
- };
370
-
371
-
372
- // Fixme: figure out the exact threshold
373
- namespace {
374
- template <typename Index, typename Device, bool BlockAccess> struct MemcpyTriggerForSlicing {
375
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const Device& device) : threshold_(2 * device.numThreads()) { }
376
- EIGEN_DEVICE_FUNC bool operator ()(Index total, Index contiguous) const {
377
- const bool prefer_block_evaluation = BlockAccess && total > 32*1024;
378
- return !prefer_block_evaluation && contiguous > threshold_;
379
- }
380
-
381
- private:
382
- Index threshold_;
383
- };
384
-
385
- // It is very expensive to start the memcpy kernel on GPU: we therefore only
386
- // use it for large copies.
387
- #ifdef EIGEN_USE_GPU
388
- template <typename Index, bool BlockAccess> struct MemcpyTriggerForSlicing<Index, GpuDevice, BlockAccess> {
389
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const GpuDevice&) { }
390
- EIGEN_DEVICE_FUNC bool operator ()(Index, Index contiguous) const { return contiguous > 4*1024*1024; }
391
- };
392
- #endif
393
-
394
- // It is very expensive to start the memcpy kernel on GPU: we therefore only
395
- // use it for large copies.
396
- #ifdef EIGEN_USE_SYCL
397
- template <typename Index, bool BlockAccess> struct MemcpyTriggerForSlicing<Index, Eigen::SyclDevice, BlockAccess> {
398
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const SyclDevice&) { }
399
- EIGEN_DEVICE_FUNC bool operator ()(Index, Index contiguous) const { return contiguous > 4*1024*1024; }
400
- };
401
- #endif
402
-
403
- }
404
-
405
- // Eval as rvalue
406
- template<typename StartIndices, typename Sizes, typename ArgType, typename Device>
407
- struct TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
408
- {
409
- typedef TensorSlicingOp<StartIndices, Sizes, ArgType> XprType;
410
- static const int NumDims = internal::array_size<Sizes>::value;
411
-
412
- typedef typename XprType::Index Index;
413
- typedef typename XprType::Scalar Scalar;
414
- typedef typename XprType::CoeffReturnType CoeffReturnType;
415
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
416
- typedef Sizes Dimensions;
417
- typedef StorageMemory<CoeffReturnType, Device> Storage;
418
- typedef StorageMemory<typename internal::remove_const<CoeffReturnType>::type, Device> ConstCastStorage;
419
- typedef typename Storage::Type EvaluatorPointerType;
420
-
421
- enum {
422
- // Alignment can't be guaranteed at compile time since it depends on the
423
- // slice offsets and sizes.
424
- IsAligned = false,
425
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
426
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess &&
427
- // FIXME: Temporary workaround for bug in slicing of bool tensors.
428
- !internal::is_same<typename internal::remove_const<Scalar>::type, bool>::value,
429
- PreferBlockAccess = true,
430
- Layout = TensorEvaluator<ArgType, Device>::Layout,
431
- CoordAccess = false,
432
- RawAccess = false
433
- };
434
-
435
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
436
-
437
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
438
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
439
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
440
-
441
- // Tensor slicing does not change the block type.
442
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
443
- TensorBlock;
444
- //===--------------------------------------------------------------------===//
445
-
446
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
447
- : m_impl(op.expression(), device), m_device(device), m_dimensions(op.sizes()), m_offsets(op.startIndices())
448
- {
449
- m_is_identity = true;
450
- for (int i = 0; i < internal::array_size<Dimensions>::value; ++i) {
451
- eigen_assert(m_impl.dimensions()[i] >=
452
- op.sizes()[i] + op.startIndices()[i]);
453
- if (m_impl.dimensions()[i] != op.sizes()[i] ||
454
- op.startIndices()[i] != 0) {
455
- m_is_identity = false;
456
- }
457
- }
458
-
459
- // No strides for scalars.
460
- if (NumDims == 0) return;
461
-
462
- const typename TensorEvaluator<ArgType, Device>::Dimensions& input_dims = m_impl.dimensions();
463
- const Sizes& output_dims = op.sizes();
464
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
465
- m_inputStrides[0] = 1;
466
- for (int i = 1; i < NumDims; ++i) {
467
- m_inputStrides[i] = m_inputStrides[i-1] * input_dims[i-1];
468
- }
469
-
470
- // Don't initialize m_fastOutputStrides[0] since it won't ever be accessed.
471
- m_outputStrides[0] = 1;
472
- for (int i = 1; i < NumDims; ++i) {
473
- m_outputStrides[i] = m_outputStrides[i-1] * output_dims[i-1];
474
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
475
- }
476
- } else {
477
- m_inputStrides[NumDims-1] = 1;
478
- for (int i = NumDims - 2; i >= 0; --i) {
479
- m_inputStrides[i] = m_inputStrides[i+1] * input_dims[i+1];
480
- }
481
-
482
- // Don't initialize m_fastOutputStrides[NumDims-1] since it won't ever be accessed.
483
- m_outputStrides[NumDims-1] = 1;
484
- for (int i = NumDims - 2; i >= 0; --i) {
485
- m_outputStrides[i] = m_outputStrides[i+1] * output_dims[i+1];
486
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
487
- }
488
- }
489
- }
490
-
491
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
492
-
493
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
494
- m_impl.evalSubExprsIfNeeded(NULL);
495
- if (!NumTraits<typename internal::remove_const<Scalar>::type>::RequireInitialization
496
- && data && m_impl.data()) {
497
- Index contiguous_values = 1;
498
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
499
- for (int i = 0; i < NumDims; ++i) {
500
- contiguous_values *= dimensions()[i];
501
- if (dimensions()[i] != m_impl.dimensions()[i]) {
502
- break;
503
- }
504
- }
505
- } else {
506
- for (int i = NumDims-1; i >= 0; --i) {
507
- contiguous_values *= dimensions()[i];
508
- if (dimensions()[i] != m_impl.dimensions()[i]) {
509
- break;
510
- }
511
- }
512
- }
513
- // Use memcpy if it's going to be faster than using the regular evaluation.
514
- const MemcpyTriggerForSlicing<Index, Device, BlockAccess> trigger(m_device);
515
- if (trigger(internal::array_prod(dimensions()), contiguous_values)) {
516
- EvaluatorPointerType src = (EvaluatorPointerType)m_impl.data();
517
- for (Index i = 0; i < internal::array_prod(dimensions()); i += contiguous_values) {
518
- Index offset = srcCoeff(i);
519
- m_device.memcpy((void*)(m_device.get(data + i)), m_device.get(src+offset), contiguous_values * sizeof(Scalar));
520
- }
521
- return false;
522
- }
523
- }
524
- return true;
525
- }
526
-
527
- #ifdef EIGEN_USE_THREADS
528
- template <typename EvalSubExprsCallback>
529
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
530
- EvaluatorPointerType /*data*/, EvalSubExprsCallback done) {
531
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
532
- }
533
- #endif // EIGEN_USE_THREADS
534
-
535
- EIGEN_STRONG_INLINE void cleanup() {
536
- m_impl.cleanup();
537
- }
538
-
539
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
540
- {
541
- if (m_is_identity) {
542
- return m_impl.coeff(index);
543
- } else {
544
- return m_impl.coeff(srcCoeff(index));
545
- }
546
- }
547
-
548
- template<int LoadMode>
549
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
550
- {
551
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
552
- EIGEN_STATIC_ASSERT((packetSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
553
- eigen_assert(index+packetSize-1 < internal::array_prod(dimensions()));
554
-
555
- if (m_is_identity) {
556
- return m_impl.template packet<LoadMode>(index);
557
- }
558
-
559
- Index inputIndices[] = {0, 0};
560
- Index indices[] = {index, index + packetSize - 1};
561
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
562
- EIGEN_UNROLL_LOOP
563
- for (int i = NumDims - 1; i > 0; --i) {
564
- const Index idx0 = indices[0] / m_fastOutputStrides[i];
565
- const Index idx1 = indices[1] / m_fastOutputStrides[i];
566
- inputIndices[0] += (idx0 + m_offsets[i]) * m_inputStrides[i];
567
- inputIndices[1] += (idx1 + m_offsets[i]) * m_inputStrides[i];
568
- indices[0] -= idx0 * m_outputStrides[i];
569
- indices[1] -= idx1 * m_outputStrides[i];
570
- }
571
- inputIndices[0] += (indices[0] + m_offsets[0]);
572
- inputIndices[1] += (indices[1] + m_offsets[0]);
573
- } else {
574
- EIGEN_UNROLL_LOOP
575
- for (int i = 0; i < NumDims - 1; ++i) {
576
- const Index idx0 = indices[0] / m_fastOutputStrides[i];
577
- const Index idx1 = indices[1] / m_fastOutputStrides[i];
578
- inputIndices[0] += (idx0 + m_offsets[i]) * m_inputStrides[i];
579
- inputIndices[1] += (idx1 + m_offsets[i]) * m_inputStrides[i];
580
- indices[0] -= idx0 * m_outputStrides[i];
581
- indices[1] -= idx1 * m_outputStrides[i];
582
- }
583
- inputIndices[0] += (indices[0] + m_offsets[NumDims-1]);
584
- inputIndices[1] += (indices[1] + m_offsets[NumDims-1]);
585
- }
586
- if (inputIndices[1] - inputIndices[0] == packetSize - 1) {
587
- PacketReturnType rslt = m_impl.template packet<Unaligned>(inputIndices[0]);
588
- return rslt;
589
- }
590
- else {
591
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[packetSize];
592
- values[0] = m_impl.coeff(inputIndices[0]);
593
- values[packetSize-1] = m_impl.coeff(inputIndices[1]);
594
- EIGEN_UNROLL_LOOP
595
- for (int i = 1; i < packetSize-1; ++i) {
596
- values[i] = coeff(index+i);
597
- }
598
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
599
- return rslt;
600
- }
601
- }
602
-
603
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
604
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, m_is_identity ? 1 : NumDims);
605
- }
606
-
607
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
608
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
609
- const size_t target_size = m_device.lastLevelCacheSize();
610
- return internal::TensorBlockResourceRequirements::merge(
611
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size),
612
- m_impl.getResourceRequirements());
613
- }
614
-
615
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
616
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
617
- bool /*root_of_expr_ast*/ = false) const {
618
- TensorBlockDesc arg_desc = desc.WithOffset(srcCoeff(desc.offset()));
619
- TensorBlock block = m_impl.block(arg_desc, scratch);
620
- if (!arg_desc.HasDestinationBuffer()) desc.DropDestinationBuffer();
621
- return block;
622
- }
623
-
624
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
625
- typename Storage::Type result = constCast(m_impl.data());
626
- if (result) {
627
- Index offset = 0;
628
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
629
- for (int i = 0; i < NumDims; ++i) {
630
- if (m_dimensions[i] != m_impl.dimensions()[i]) {
631
- offset += m_offsets[i] * m_inputStrides[i];
632
- for (int j = i+1; j < NumDims; ++j) {
633
- if (m_dimensions[j] > 1) {
634
- return NULL;
635
- }
636
- offset += m_offsets[j] * m_inputStrides[j];
637
- }
638
- break;
639
- }
640
- }
641
- } else {
642
- for (int i = NumDims - 1; i >= 0; --i) {
643
- if (m_dimensions[i] != m_impl.dimensions()[i]) {
644
- offset += m_offsets[i] * m_inputStrides[i];
645
- for (int j = i-1; j >= 0; --j) {
646
- if (m_dimensions[j] > 1) {
647
- return NULL;
648
- }
649
- offset += m_offsets[j] * m_inputStrides[j];
650
- }
651
- break;
652
- }
653
- }
654
- }
655
- return result + offset;
656
- }
657
- return NULL;
658
- }
659
- #ifdef EIGEN_USE_SYCL
660
- // binding placeholder accessors to a command group handler for SYCL
661
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
662
- m_impl.bind(cgh);
663
- }
664
- #endif
665
-
666
- protected:
667
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
668
- {
669
- Index inputIndex = 0;
670
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
671
- EIGEN_UNROLL_LOOP
672
- for (int i = NumDims - 1; i > 0; --i) {
673
- const Index idx = index / m_fastOutputStrides[i];
674
- inputIndex += (idx + m_offsets[i]) * m_inputStrides[i];
675
- index -= idx * m_outputStrides[i];
676
- }
677
- inputIndex += (index + m_offsets[0]);
678
- } else {
679
- EIGEN_UNROLL_LOOP
680
- for (int i = 0; i < NumDims - 1; ++i) {
681
- const Index idx = index / m_fastOutputStrides[i];
682
- inputIndex += (idx + m_offsets[i]) * m_inputStrides[i];
683
- index -= idx * m_outputStrides[i];
684
- }
685
- inputIndex += (index + m_offsets[NumDims-1]);
686
- }
687
- return inputIndex;
688
- }
689
-
690
- array<Index, NumDims> m_outputStrides;
691
- array<internal::TensorIntDivisor<Index>, NumDims> m_fastOutputStrides;
692
- array<Index, NumDims> m_inputStrides;
693
- TensorEvaluator<ArgType, Device> m_impl;
694
- const Device EIGEN_DEVICE_REF m_device;
695
- Dimensions m_dimensions;
696
- bool m_is_identity;
697
- const StartIndices m_offsets;
698
- };
699
-
700
-
701
- // Eval as lvalue
702
- template<typename StartIndices, typename Sizes, typename ArgType, typename Device>
703
- struct TensorEvaluator<TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
704
- : public TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
705
- {
706
- typedef TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device> Base;
707
- typedef TensorSlicingOp<StartIndices, Sizes, ArgType> XprType;
708
- static const int NumDims = internal::array_size<Sizes>::value;
709
-
710
- typedef typename XprType::Index Index;
711
- typedef typename XprType::Scalar Scalar;
712
- typedef typename XprType::CoeffReturnType CoeffReturnType;
713
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
714
- typedef Sizes Dimensions;
715
-
716
- enum {
717
- IsAligned = false,
718
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
719
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
720
- PreferBlockAccess = true,
721
- Layout = TensorEvaluator<ArgType, Device>::Layout,
722
- CoordAccess = false,
723
- RawAccess = (NumDims == 1) & TensorEvaluator<ArgType, Device>::RawAccess
724
- };
725
-
726
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
727
-
728
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
729
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
730
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
731
- //===--------------------------------------------------------------------===//
732
-
733
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
734
- : Base(op, device)
735
- { }
736
-
737
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
738
- {
739
- if (this->m_is_identity) {
740
- return this->m_impl.coeffRef(index);
741
- } else {
742
- return this->m_impl.coeffRef(this->srcCoeff(index));
743
- }
744
- }
745
-
746
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
747
- void writePacket(Index index, const PacketReturnType& x)
748
- {
749
- if (this->m_is_identity) {
750
- this->m_impl.template writePacket<StoreMode>(index, x);
751
- return;
752
- }
753
-
754
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
755
- Index inputIndices[] = {0, 0};
756
- Index indices[] = {index, index + packetSize - 1};
757
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
758
- EIGEN_UNROLL_LOOP
759
- for (int i = NumDims - 1; i > 0; --i) {
760
- const Index idx0 = indices[0] / this->m_fastOutputStrides[i];
761
- const Index idx1 = indices[1] / this->m_fastOutputStrides[i];
762
- inputIndices[0] += (idx0 + this->m_offsets[i]) * this->m_inputStrides[i];
763
- inputIndices[1] += (idx1 + this->m_offsets[i]) * this->m_inputStrides[i];
764
- indices[0] -= idx0 * this->m_outputStrides[i];
765
- indices[1] -= idx1 * this->m_outputStrides[i];
766
- }
767
- inputIndices[0] += (indices[0] + this->m_offsets[0]);
768
- inputIndices[1] += (indices[1] + this->m_offsets[0]);
769
- } else {
770
- EIGEN_UNROLL_LOOP
771
- for (int i = 0; i < NumDims - 1; ++i) {
772
- const Index idx0 = indices[0] / this->m_fastOutputStrides[i];
773
- const Index idx1 = indices[1] / this->m_fastOutputStrides[i];
774
- inputIndices[0] += (idx0 + this->m_offsets[i]) * this->m_inputStrides[i];
775
- inputIndices[1] += (idx1 + this->m_offsets[i]) * this->m_inputStrides[i];
776
- indices[0] -= idx0 * this->m_outputStrides[i];
777
- indices[1] -= idx1 * this->m_outputStrides[i];
778
- }
779
- inputIndices[0] += (indices[0] + this->m_offsets[NumDims-1]);
780
- inputIndices[1] += (indices[1] + this->m_offsets[NumDims-1]);
781
- }
782
- if (inputIndices[1] - inputIndices[0] == packetSize - 1) {
783
- this->m_impl.template writePacket<StoreMode>(inputIndices[0], x);
784
- }
785
- else {
786
- EIGEN_ALIGN_MAX CoeffReturnType values[packetSize];
787
- internal::pstore<CoeffReturnType, PacketReturnType>(values, x);
788
- this->m_impl.coeffRef(inputIndices[0]) = values[0];
789
- this->m_impl.coeffRef(inputIndices[1]) = values[packetSize-1];
790
- EIGEN_UNROLL_LOOP
791
- for (int i = 1; i < packetSize-1; ++i) {
792
- this->coeffRef(index+i) = values[i];
793
- }
794
- }
795
- }
796
-
797
- template<typename TensorBlock>
798
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
799
- const TensorBlockDesc& desc, const TensorBlock& block) {
800
- TensorBlockDesc arg_desc = desc.WithOffset(this->srcCoeff(desc.offset()));
801
- this->m_impl.writeBlock(arg_desc, block);
802
- }
803
- };
804
-
805
- namespace internal {
806
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
807
- struct traits<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> > : public traits<XprType>
808
- {
809
- typedef typename XprType::Scalar Scalar;
810
- typedef traits<XprType> XprTraits;
811
- typedef typename XprTraits::StorageKind StorageKind;
812
- typedef typename XprTraits::Index Index;
813
- typedef typename XprType::Nested Nested;
814
- typedef typename remove_reference<Nested>::type _Nested;
815
- static const int NumDimensions = array_size<StartIndices>::value;
816
- static const int Layout = XprTraits::Layout;
817
- typedef typename XprTraits::PointerType PointerType;
818
- };
819
-
820
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
821
- struct eval<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>, Eigen::Dense>
822
- {
823
- typedef const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>EIGEN_DEVICE_REF type;
824
- };
825
-
826
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
827
- struct nested<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>, 1, typename eval<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> >::type>
828
- {
829
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> type;
830
- };
831
-
832
- } // end namespace internal
833
-
834
-
835
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
836
- class TensorStridingSlicingOp : public TensorBase<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> >
837
- {
838
- public:
839
- typedef TensorBase<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> > Base;
840
- typedef typename internal::traits<TensorStridingSlicingOp>::Scalar Scalar;
841
- typedef typename XprType::CoeffReturnType CoeffReturnType;
842
- typedef typename internal::nested<TensorStridingSlicingOp>::type Nested;
843
- typedef typename internal::traits<TensorStridingSlicingOp>::StorageKind StorageKind;
844
- typedef typename internal::traits<TensorStridingSlicingOp>::Index Index;
845
-
846
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorStridingSlicingOp(
847
- const XprType& expr, const StartIndices& startIndices,
848
- const StopIndices& stopIndices, const Strides& strides)
849
- : m_xpr(expr), m_startIndices(startIndices), m_stopIndices(stopIndices),
850
- m_strides(strides) {}
851
-
852
- EIGEN_DEVICE_FUNC
853
- const StartIndices& startIndices() const { return m_startIndices; }
854
- EIGEN_DEVICE_FUNC
855
- const StartIndices& stopIndices() const { return m_stopIndices; }
856
- EIGEN_DEVICE_FUNC
857
- const StartIndices& strides() const { return m_strides; }
858
-
859
- EIGEN_DEVICE_FUNC
860
- const typename internal::remove_all<typename XprType::Nested>::type&
861
- expression() const { return m_xpr; }
862
-
863
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorStridingSlicingOp)
864
-
865
- protected:
866
- typename XprType::Nested m_xpr;
867
- const StartIndices m_startIndices;
868
- const StopIndices m_stopIndices;
869
- const Strides m_strides;
870
- };
871
-
872
- // Eval as rvalue
873
- template<typename StartIndices, typename StopIndices, typename Strides, typename ArgType, typename Device>
874
- struct TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
875
- {
876
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType> XprType;
877
- static const int NumDims = internal::array_size<Strides>::value;
878
- typedef typename XprType::Index Index;
879
- typedef typename XprType::Scalar Scalar;
880
- typedef typename XprType::CoeffReturnType CoeffReturnType;
881
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
882
- typedef StorageMemory<CoeffReturnType, Device> Storage;
883
- typedef typename Storage::Type EvaluatorPointerType;
884
- typedef Strides Dimensions;
885
-
886
- enum {
887
- // Alignment can't be guaranteed at compile time since it depends on the
888
- // slice offsets and sizes.
889
- IsAligned = false,
890
- PacketAccess = false,
891
- BlockAccess = false,
892
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
893
- Layout = TensorEvaluator<ArgType, Device>::Layout,
894
- RawAccess = false
895
- };
896
-
897
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
898
- typedef internal::TensorBlockNotImplemented TensorBlock;
899
- //===--------------------------------------------------------------------===//
900
-
901
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
902
- : m_impl(op.expression(), device),
903
- m_device(device),
904
- m_strides(op.strides())
905
- {
906
- // Handle degenerate intervals by gracefully clamping and allowing m_dimensions to be zero
907
- DSizes<Index, NumDims> startIndicesClamped, stopIndicesClamped;
908
- for (ptrdiff_t i = 0; i < internal::array_size<Dimensions>::value; ++i) {
909
- eigen_assert(m_strides[i] != 0 && "0 stride is invalid");
910
- if (m_strides[i] > 0) {
911
- startIndicesClamped[i] =
912
- clamp(op.startIndices()[i], 0, m_impl.dimensions()[i]);
913
- stopIndicesClamped[i] =
914
- clamp(op.stopIndices()[i], 0, m_impl.dimensions()[i]);
915
- } else {
916
- /* implies m_strides[i] < 0 by assert */
917
- startIndicesClamped[i] =
918
- clamp(op.startIndices()[i], -1, m_impl.dimensions()[i] - 1);
919
- stopIndicesClamped[i] =
920
- clamp(op.stopIndices()[i], -1, m_impl.dimensions()[i] - 1);
921
- }
922
- m_startIndices[i] = startIndicesClamped[i];
923
- }
924
-
925
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions InputDimensions;
926
- const InputDimensions& input_dims = m_impl.dimensions();
927
-
928
- // compute output tensor shape
929
- m_is_identity = true;
930
- for (int i = 0; i < NumDims; i++) {
931
- Index interval = stopIndicesClamped[i] - startIndicesClamped[i];
932
- if (interval == 0 || ((interval < 0) != (m_strides[i] < 0))) {
933
- m_dimensions[i] = 0;
934
- } else {
935
- m_dimensions[i] =
936
- (interval / m_strides[i]) + (interval % m_strides[i] != 0 ? 1 : 0);
937
- eigen_assert(m_dimensions[i] >= 0);
938
- }
939
- if (m_strides[i] != 1 || interval != m_impl.dimensions()[i]) {
940
- m_is_identity = false;
941
- }
942
- }
943
-
944
- Strides output_dims = m_dimensions;
945
-
946
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
947
- m_inputStrides[0] = m_strides[0];
948
- m_offsets[0] = startIndicesClamped[0];
949
- Index previousDimProduct = 1;
950
- for (int i = 1; i < NumDims; ++i) {
951
- previousDimProduct *= input_dims[i-1];
952
- m_inputStrides[i] = previousDimProduct * m_strides[i];
953
- m_offsets[i] = startIndicesClamped[i] * previousDimProduct;
954
- }
955
-
956
- // Don't initialize m_fastOutputStrides[0] since it won't ever be accessed.
957
- m_outputStrides[0] = 1;
958
- for (int i = 1; i < NumDims; ++i) {
959
- m_outputStrides[i] = m_outputStrides[i-1] * output_dims[i-1];
960
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
961
- }
962
- } else {
963
- m_inputStrides[NumDims-1] = m_strides[NumDims-1];
964
- m_offsets[NumDims-1] = startIndicesClamped[NumDims-1];
965
- Index previousDimProduct = 1;
966
- for (int i = NumDims - 2; i >= 0; --i) {
967
- previousDimProduct *= input_dims[i+1];
968
- m_inputStrides[i] = previousDimProduct * m_strides[i];
969
- m_offsets[i] = startIndicesClamped[i] * previousDimProduct;
970
- }
971
-
972
- m_outputStrides[NumDims-1] = 1;
973
- for (int i = NumDims - 2; i >= 0; --i) {
974
- m_outputStrides[i] = m_outputStrides[i+1] * output_dims[i+1];
975
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
976
- }
977
- }
978
- }
979
-
980
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
981
-
982
-
983
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
984
- m_impl.evalSubExprsIfNeeded(NULL);
985
- return true;
986
- }
987
-
988
- EIGEN_STRONG_INLINE void cleanup() {
989
- m_impl.cleanup();
990
- }
991
-
992
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
993
- {
994
- if (m_is_identity) {
995
- return m_impl.coeff(index);
996
- } else {
997
- return m_impl.coeff(srcCoeff(index));
998
- }
999
- }
1000
-
1001
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
1002
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, m_is_identity ? 1 : NumDims);
1003
- }
1004
-
1005
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
1006
- return NULL;
1007
- }
1008
- #ifdef EIGEN_USE_SYCL
1009
- // binding placeholder accessors to a command group handler for SYCL
1010
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
1011
- m_impl.bind(cgh);
1012
- }
1013
- #endif
1014
- protected:
1015
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
1016
- {
1017
- Index inputIndex = 0;
1018
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
1019
- EIGEN_UNROLL_LOOP
1020
- for (int i = NumDims - 1; i >= 0; --i) {
1021
- const Index idx = index / m_fastOutputStrides[i];
1022
- inputIndex += idx * m_inputStrides[i] + m_offsets[i];
1023
- index -= idx * m_outputStrides[i];
1024
- }
1025
- } else {
1026
- EIGEN_UNROLL_LOOP
1027
- for (int i = 0; i < NumDims; ++i) {
1028
- const Index idx = index / m_fastOutputStrides[i];
1029
- inputIndex += idx * m_inputStrides[i] + m_offsets[i];
1030
- index -= idx * m_outputStrides[i];
1031
- }
1032
- }
1033
- return inputIndex;
1034
- }
1035
-
1036
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index clamp(Index value, Index min, Index max) {
1037
- #ifndef SYCL_DEVICE_ONLY
1038
- return numext::maxi(min, numext::mini(max,value));
1039
- #else
1040
- return cl::sycl::clamp(value, min, max);
1041
- #endif
1042
- }
1043
-
1044
- array<Index, NumDims> m_outputStrides;
1045
- array<internal::TensorIntDivisor<Index>, NumDims> m_fastOutputStrides;
1046
- array<Index, NumDims> m_inputStrides;
1047
- bool m_is_identity;
1048
- TensorEvaluator<ArgType, Device> m_impl;
1049
- const Device EIGEN_DEVICE_REF m_device;
1050
- DSizes<Index, NumDims> m_startIndices; // clamped startIndices
1051
- DSizes<Index, NumDims> m_dimensions;
1052
- DSizes<Index, NumDims> m_offsets; // offset in a flattened shape
1053
- const Strides m_strides;
1054
- };
1055
-
1056
- // Eval as lvalue
1057
- template<typename StartIndices, typename StopIndices, typename Strides, typename ArgType, typename Device>
1058
- struct TensorEvaluator<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
1059
- : public TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
1060
- {
1061
- typedef TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device> Base;
1062
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType> XprType;
1063
- static const int NumDims = internal::array_size<Strides>::value;
1064
-
1065
- enum {
1066
- IsAligned = false,
1067
- PacketAccess = false,
1068
- BlockAccess = false,
1069
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
1070
- Layout = TensorEvaluator<ArgType, Device>::Layout,
1071
- CoordAccess = TensorEvaluator<ArgType, Device>::CoordAccess,
1072
- RawAccess = false
1073
- };
1074
-
1075
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
1076
- typedef internal::TensorBlockNotImplemented TensorBlock;
1077
- //===--------------------------------------------------------------------===//
1078
-
1079
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
1080
- : Base(op, device)
1081
- { }
1082
-
1083
- typedef typename XprType::Index Index;
1084
- typedef typename XprType::Scalar Scalar;
1085
- typedef typename XprType::CoeffReturnType CoeffReturnType;
1086
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
1087
- typedef Strides Dimensions;
1088
-
1089
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
1090
- {
1091
- if (this->m_is_identity) {
1092
- return this->m_impl.coeffRef(index);
1093
- } else {
1094
- return this->m_impl.coeffRef(this->srcCoeff(index));
1095
- }
1096
- }
1097
- };
1098
-
1099
-
1100
- } // end namespace Eigen
1101
-
1102
- #endif // EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H