sequenzo 0.1.17__cp39-cp39-macosx_10_9_universal2.whl → 0.1.19__cp39-cp39-macosx_10_9_universal2.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h

@@ -1,624 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
-// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_PARTIALLU_H
-#define EIGEN_PARTIALLU_H
-
-namespace Eigen {
-
-namespace internal {
-template<typename _MatrixType> struct traits<PartialPivLU<_MatrixType> >
- : traits<_MatrixType>
-{
-  typedef MatrixXpr XprKind;
-  typedef SolverStorage StorageKind;
-  typedef int StorageIndex;
-  typedef traits<_MatrixType> BaseTraits;
-  enum {
-    Flags = BaseTraits::Flags & RowMajorBit,
-    CoeffReadCost = Dynamic
-  };
-};
-
-template<typename T,typename Derived>
-struct enable_if_ref;
-// {
-//   typedef Derived type;
-// };
-
-template<typename T,typename Derived>
-struct enable_if_ref<Ref<T>,Derived> {
-  typedef Derived type;
-};
-
-} // end namespace internal
-
-/** \ingroup LU_Module
-  *
-  * \class PartialPivLU
-  *
-  * \brief LU decomposition of a matrix with partial pivoting, and related features
-  *
-  * \tparam _MatrixType the type of the matrix of which we are computing the LU decomposition
-  *
-  * This class represents a LU decomposition of a \b square \b invertible matrix, with partial pivoting: the matrix A
-  * is decomposed as A = PLU where L is unit-lower-triangular, U is upper-triangular, and P
-  * is a permutation matrix.
-  *
-  * Typically, partial pivoting LU decomposition is only considered numerically stable for square invertible
-  * matrices. Thus LAPACK's dgesv and dgesvx require the matrix to be square and invertible. The present class
-  * does the same. It will assert that the matrix is square, but it won't (actually it can't) check that the
-  * matrix is invertible: it is your task to check that you only use this decomposition on invertible matrices.
-  *
-  * The guaranteed safe alternative, working for all matrices, is the full pivoting LU decomposition, provided
-  * by class FullPivLU.
-  *
-  * This is \b not a rank-revealing LU decomposition. Many features are intentionally absent from this class,
-  * such as rank computation. If you need these features, use class FullPivLU.
-  *
-  * This LU decomposition is suitable to invert invertible matrices. It is what MatrixBase::inverse() uses
-  * in the general case.
-  * On the other hand, it is \b not suitable to determine whether a given matrix is invertible.
-  *
-  * The data of the LU decomposition can be directly accessed through the methods matrixLU(), permutationP().
-  *
-  * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
-  *
-  * \sa MatrixBase::partialPivLu(), MatrixBase::determinant(), MatrixBase::inverse(), MatrixBase::computeInverse(), class FullPivLU
-  */
-template<typename _MatrixType> class PartialPivLU
-  : public SolverBase<PartialPivLU<_MatrixType> >
-{
-  public:
-
-    typedef _MatrixType MatrixType;
-    typedef SolverBase<PartialPivLU> Base;
-    friend class SolverBase<PartialPivLU>;
-
-    EIGEN_GENERIC_PUBLIC_INTERFACE(PartialPivLU)
-    enum {
-      MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
-      MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
-    };
-    typedef PermutationMatrix<RowsAtCompileTime, MaxRowsAtCompileTime> PermutationType;
-    typedef Transpositions<RowsAtCompileTime, MaxRowsAtCompileTime> TranspositionType;
-    typedef typename MatrixType::PlainObject PlainObject;
-
-    /**
-      * \brief Default Constructor.
-      *
-      * The default constructor is useful in cases in which the user intends to
-      * perform decompositions via PartialPivLU::compute(const MatrixType&).
-      */
-    PartialPivLU();
-
-    /** \brief Default Constructor with memory preallocation
-      *
-      * Like the default constructor but with preallocation of the internal data
-      * according to the specified problem \a size.
-      * \sa PartialPivLU()
-      */
-    explicit PartialPivLU(Index size);
-
-    /** Constructor.
-      *
-      * \param matrix the matrix of which to compute the LU decomposition.
-      *
-      * \warning The matrix should have full rank (e.g. if it's square, it should be invertible).
-      * If you need to deal with non-full rank, use class FullPivLU instead.
-      */
-    template<typename InputType>
-    explicit PartialPivLU(const EigenBase<InputType>& matrix);
-
-    /** Constructor for \link InplaceDecomposition inplace decomposition \endlink
-      *
-      * \param matrix the matrix of which to compute the LU decomposition.
-      *
-      * \warning The matrix should have full rank (e.g. if it's square, it should be invertible).
-      * If you need to deal with non-full rank, use class FullPivLU instead.
-      */
-    template<typename InputType>
-    explicit PartialPivLU(EigenBase<InputType>& matrix);
-
-    template<typename InputType>
-    PartialPivLU& compute(const EigenBase<InputType>& matrix) {
-      m_lu = matrix.derived();
-      compute();
-      return *this;
-    }
-
-    /** \returns the LU decomposition matrix: the upper-triangular part is U, the
-      * unit-lower-triangular part is L (at least for square matrices; in the non-square
-      * case, special care is needed, see the documentation of class FullPivLU).
-      *
-      * \sa matrixL(), matrixU()
-      */
-    inline const MatrixType& matrixLU() const
-    {
-      eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
-      return m_lu;
-    }
-
-    /** \returns the permutation matrix P.
-      */
-    inline const PermutationType& permutationP() const
-    {
-      eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
-      return m_p;
-    }
-
-    #ifdef EIGEN_PARSED_BY_DOXYGEN
-    /** This method returns the solution x to the equation Ax=b, where A is the matrix of which
-      * *this is the LU decomposition.
-      *
-      * \param b the right-hand-side of the equation to solve. Can be a vector or a matrix,
-      *          the only requirement in order for the equation to make sense is that
-      *          b.rows()==A.rows(), where A is the matrix of which *this is the LU decomposition.
-      *
-      * \returns the solution.
-      *
-      * Example: \include PartialPivLU_solve.cpp
-      * Output: \verbinclude PartialPivLU_solve.out
-      *
-      * Since this PartialPivLU class assumes anyway that the matrix A is invertible, the solution
-      * theoretically exists and is unique regardless of b.
-      *
-      * \sa TriangularView::solve(), inverse(), computeInverse()
-      */
-    template<typename Rhs>
-    inline const Solve<PartialPivLU, Rhs>
-    solve(const MatrixBase<Rhs>& b) const;
-    #endif
-
-    /** \returns an estimate of the reciprocal condition number of the matrix of which \c *this is
-        the LU decomposition.
-      */
-    inline RealScalar rcond() const
-    {
-      eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
-      return internal::rcond_estimate_helper(m_l1_norm, *this);
-    }
-
-    /** \returns the inverse of the matrix of which *this is the LU decomposition.
-      *
-      * \warning The matrix being decomposed here is assumed to be invertible. If you need to check for
-      *          invertibility, use class FullPivLU instead.
-      *
-      * \sa MatrixBase::inverse(), LU::inverse()
-      */
-    inline const Inverse<PartialPivLU> inverse() const
-    {
-      eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
-      return Inverse<PartialPivLU>(*this);
-    }
-
-    /** \returns the determinant of the matrix of which
-      * *this is the LU decomposition. It has only linear complexity
-      * (that is, O(n) where n is the dimension of the square matrix)
-      * as the LU decomposition has already been computed.
-      *
-      * \note For fixed-size matrices of size up to 4, MatrixBase::determinant() offers
-      *       optimized paths.
-      *
-      * \warning a determinant can be very big or small, so for matrices
-      * of large enough dimension, there is a risk of overflow/underflow.
-      *
-      * \sa MatrixBase::determinant()
-      */
-    Scalar determinant() const;
-
-    MatrixType reconstructedMatrix() const;
-
-    EIGEN_CONSTEXPR inline Index rows() const EIGEN_NOEXCEPT { return m_lu.rows(); }
-    EIGEN_CONSTEXPR inline Index cols() const EIGEN_NOEXCEPT { return m_lu.cols(); }
-
-    #ifndef EIGEN_PARSED_BY_DOXYGEN
-    template<typename RhsType, typename DstType>
-    EIGEN_DEVICE_FUNC
-    void _solve_impl(const RhsType &rhs, DstType &dst) const {
-     /* The decomposition PA = LU can be rewritten as A = P^{-1} L U.
-      * So we proceed as follows:
-      * Step 1: compute c = Pb.
-      * Step 2: replace c by the solution x to Lx = c.
-      * Step 3: replace c by the solution x to Ux = c.
-      */
-
-      // Step 1
-      dst = permutationP() * rhs;
-
-      // Step 2
-      m_lu.template triangularView<UnitLower>().solveInPlace(dst);
-
-      // Step 3
-      m_lu.template triangularView<Upper>().solveInPlace(dst);
-    }
-
-    template<bool Conjugate, typename RhsType, typename DstType>
-    EIGEN_DEVICE_FUNC
-    void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const {
-     /* The decomposition PA = LU can be rewritten as A^T = U^T L^T P.
-      * So we proceed as follows:
-      * Step 1: compute c as the solution to L^T c = b
-      * Step 2: replace c by the solution x to U^T x = c.
-      * Step 3: update  c = P^-1 c.
-      */
-
-      eigen_assert(rhs.rows() == m_lu.cols());
-
-      // Step 1
-      dst = m_lu.template triangularView<Upper>().transpose()
-                .template conjugateIf<Conjugate>().solve(rhs);
-      // Step 2
-      m_lu.template triangularView<UnitLower>().transpose()
-          .template conjugateIf<Conjugate>().solveInPlace(dst);
-      // Step 3
-      dst = permutationP().transpose() * dst;
-    }
-    #endif
-
-  protected:
-
-    static void check_template_parameters()
-    {
-      EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
-    }
-
-    void compute();
-
-    MatrixType m_lu;
-    PermutationType m_p;
-    TranspositionType m_rowsTranspositions;
-    RealScalar m_l1_norm;
-    signed char m_det_p;
-    bool m_isInitialized;
-};
-
-template<typename MatrixType>
-PartialPivLU<MatrixType>::PartialPivLU()
-  : m_lu(),
-    m_p(),
-    m_rowsTranspositions(),
-    m_l1_norm(0),
-    m_det_p(0),
-    m_isInitialized(false)
-{
-}
-
-template<typename MatrixType>
-PartialPivLU<MatrixType>::PartialPivLU(Index size)
-  : m_lu(size, size),
-    m_p(size),
-    m_rowsTranspositions(size),
-    m_l1_norm(0),
-    m_det_p(0),
-    m_isInitialized(false)
-{
-}
-
-template<typename MatrixType>
-template<typename InputType>
-PartialPivLU<MatrixType>::PartialPivLU(const EigenBase<InputType>& matrix)
-  : m_lu(matrix.rows(),matrix.cols()),
-    m_p(matrix.rows()),
-    m_rowsTranspositions(matrix.rows()),
-    m_l1_norm(0),
-    m_det_p(0),
-    m_isInitialized(false)
-{
-  compute(matrix.derived());
-}
-
-template<typename MatrixType>
-template<typename InputType>
-PartialPivLU<MatrixType>::PartialPivLU(EigenBase<InputType>& matrix)
-  : m_lu(matrix.derived()),
-    m_p(matrix.rows()),
-    m_rowsTranspositions(matrix.rows()),
-    m_l1_norm(0),
-    m_det_p(0),
-    m_isInitialized(false)
-{
-  compute();
-}
-
-namespace internal {
-
-/** \internal This is the blocked version of fullpivlu_unblocked() */
-template<typename Scalar, int StorageOrder, typename PivIndex, int SizeAtCompileTime=Dynamic>
-struct partial_lu_impl
-{
-  static const int UnBlockedBound = 16;
-  static const bool UnBlockedAtCompileTime = SizeAtCompileTime!=Dynamic && SizeAtCompileTime<=UnBlockedBound;
-  static const int ActualSizeAtCompileTime = UnBlockedAtCompileTime ? SizeAtCompileTime : Dynamic;
-  // Remaining rows and columns at compile-time:
-  static const int RRows = SizeAtCompileTime==2 ? 1 : Dynamic;
-  static const int RCols = SizeAtCompileTime==2 ? 1 : Dynamic;
-  typedef Matrix<Scalar, ActualSizeAtCompileTime, ActualSizeAtCompileTime, StorageOrder> MatrixType;
-  typedef Ref<MatrixType> MatrixTypeRef;
-  typedef Ref<Matrix<Scalar, Dynamic, Dynamic, StorageOrder> > BlockType;
-  typedef typename MatrixType::RealScalar RealScalar;
-
-  /** \internal performs the LU decomposition in-place of the matrix \a lu
-    * using an unblocked algorithm.
-    *
-    * In addition, this function returns the row transpositions in the
-    * vector \a row_transpositions which must have a size equal to the number
-    * of columns of the matrix \a lu, and an integer \a nb_transpositions
-    * which returns the actual number of transpositions.
-    *
-    * \returns The index of the first pivot which is exactly zero if any, or a negative number otherwise.
-    */
-  static Index unblocked_lu(MatrixTypeRef& lu, PivIndex* row_transpositions, PivIndex& nb_transpositions)
-  {
-    typedef scalar_score_coeff_op<Scalar> Scoring;
-    typedef typename Scoring::result_type Score;
-    const Index rows = lu.rows();
-    const Index cols = lu.cols();
-    const Index size = (std::min)(rows,cols);
-    // For small compile-time matrices it is worth processing the last row separately:
-    //  speedup: +100% for 2x2, +10% for others.
-    const Index endk = UnBlockedAtCompileTime ? size-1 : size;
-    nb_transpositions = 0;
-    Index first_zero_pivot = -1;
-    for(Index k = 0; k < endk; ++k)
-    {
-      int rrows = internal::convert_index<int>(rows-k-1);
-      int rcols = internal::convert_index<int>(cols-k-1);
-
-      Index row_of_biggest_in_col;
-      Score biggest_in_corner
-        = lu.col(k).tail(rows-k).unaryExpr(Scoring()).maxCoeff(&row_of_biggest_in_col);
-      row_of_biggest_in_col += k;
-
-      row_transpositions[k] = PivIndex(row_of_biggest_in_col);
-
-      if(biggest_in_corner != Score(0))
-      {
-        if(k != row_of_biggest_in_col)
-        {
-          lu.row(k).swap(lu.row(row_of_biggest_in_col));
-          ++nb_transpositions;
-        }
-
-        lu.col(k).tail(fix<RRows>(rrows)) /= lu.coeff(k,k);
-      }
-      else if(first_zero_pivot==-1)
-      {
-        // the pivot is exactly zero, we record the index of the first pivot which is exactly 0,
-        // and continue the factorization such we still have A = PLU
-        first_zero_pivot = k;
-      }
-
-      if(k<rows-1)
-        lu.bottomRightCorner(fix<RRows>(rrows),fix<RCols>(rcols)).noalias() -= lu.col(k).tail(fix<RRows>(rrows)) * lu.row(k).tail(fix<RCols>(rcols));
-    }
-
-    // special handling of the last entry
-    if(UnBlockedAtCompileTime)
-    {
-      Index k = endk;
-      row_transpositions[k] = PivIndex(k);
-      if (Scoring()(lu(k, k)) == Score(0) && first_zero_pivot == -1)
-        first_zero_pivot = k;
-    }
-
-    return first_zero_pivot;
-  }
-
-  /** \internal performs the LU decomposition in-place of the matrix represented
-    * by the variables \a rows, \a cols, \a lu_data, and \a lu_stride using a
-    * recursive, blocked algorithm.
-    *
-    * In addition, this function returns the row transpositions in the
-    * vector \a row_transpositions which must have a size equal to the number
-    * of columns of the matrix \a lu, and an integer \a nb_transpositions
-    * which returns the actual number of transpositions.
-    *
-    * \returns The index of the first pivot which is exactly zero if any, or a negative number otherwise.
-    *
-    * \note This very low level interface using pointers, etc. is to:
-    *   1 - reduce the number of instantiations to the strict minimum
-    *   2 - avoid infinite recursion of the instantiations with Block<Block<Block<...> > >
-    */
-  static Index blocked_lu(Index rows, Index cols, Scalar* lu_data, Index luStride, PivIndex* row_transpositions, PivIndex& nb_transpositions, Index maxBlockSize=256)
-  {
-    MatrixTypeRef lu = MatrixType::Map(lu_data,rows, cols, OuterStride<>(luStride));
-
-    const Index size = (std::min)(rows,cols);
-
-    // if the matrix is too small, no blocking:
-    if(UnBlockedAtCompileTime || size<=UnBlockedBound)
-    {
-      return unblocked_lu(lu, row_transpositions, nb_transpositions);
-    }
-
-    // automatically adjust the number of subdivisions to the size
-    // of the matrix so that there is enough sub blocks:
-    Index blockSize;
-    {
-      blockSize = size/8;
-      blockSize = (blockSize/16)*16;
-      blockSize = (std::min)((std::max)(blockSize,Index(8)), maxBlockSize);
-    }
-
-    nb_transpositions = 0;
-    Index first_zero_pivot = -1;
-    for(Index k = 0; k < size; k+=blockSize)
-    {
-      Index bs = (std::min)(size-k,blockSize); // actual size of the block
-      Index trows = rows - k - bs; // trailing rows
-      Index tsize = size - k - bs; // trailing size
-
-      // partition the matrix:
-      //                          A00 | A01 | A02
-      // lu  = A_0 | A_1 | A_2 =  A10 | A11 | A12
-      //                          A20 | A21 | A22
-      BlockType A_0 = lu.block(0,0,rows,k);
-      BlockType A_2 = lu.block(0,k+bs,rows,tsize);
-      BlockType A11 = lu.block(k,k,bs,bs);
-      BlockType A12 = lu.block(k,k+bs,bs,tsize);
-      BlockType A21 = lu.block(k+bs,k,trows,bs);
-      BlockType A22 = lu.block(k+bs,k+bs,trows,tsize);
-
-      PivIndex nb_transpositions_in_panel;
-      // recursively call the blocked LU algorithm on [A11^T A21^T]^T
-      // with a very small blocking size:
-      Index ret = blocked_lu(trows+bs, bs, &lu.coeffRef(k,k), luStride,
-                   row_transpositions+k, nb_transpositions_in_panel, 16);
-      if(ret>=0 && first_zero_pivot==-1)
-        first_zero_pivot = k+ret;
-
-      nb_transpositions += nb_transpositions_in_panel;
-      // update permutations and apply them to A_0
-      for(Index i=k; i<k+bs; ++i)
-      {
-        Index piv = (row_transpositions[i] += internal::convert_index<PivIndex>(k));
-        A_0.row(i).swap(A_0.row(piv));
-      }
-
-      if(trows)
-      {
-        // apply permutations to A_2
-        for(Index i=k;i<k+bs; ++i)
-          A_2.row(i).swap(A_2.row(row_transpositions[i]));
-
-        // A12 = A11^-1 A12
-        A11.template triangularView<UnitLower>().solveInPlace(A12);
-
-        A22.noalias() -= A21 * A12;
-      }
-    }
-    return first_zero_pivot;
-  }
-};
-
-/** \internal performs the LU decomposition with partial pivoting in-place.
-  */
-template<typename MatrixType, typename TranspositionType>
-void partial_lu_inplace(MatrixType& lu, TranspositionType& row_transpositions, typename TranspositionType::StorageIndex& nb_transpositions)
-{
-  // Special-case of zero matrix.
-  if (lu.rows() == 0 || lu.cols() == 0) {
-    nb_transpositions = 0;
-    return;
-  }
-  eigen_assert(lu.cols() == row_transpositions.size());
-  eigen_assert(row_transpositions.size() < 2 || (&row_transpositions.coeffRef(1)-&row_transpositions.coeffRef(0)) == 1);
-
-  partial_lu_impl
-    < typename MatrixType::Scalar, MatrixType::Flags&RowMajorBit?RowMajor:ColMajor,
-      typename TranspositionType::StorageIndex,
-      EIGEN_SIZE_MIN_PREFER_FIXED(MatrixType::RowsAtCompileTime,MatrixType::ColsAtCompileTime)>
-    ::blocked_lu(lu.rows(), lu.cols(), &lu.coeffRef(0,0), lu.outerStride(), &row_transpositions.coeffRef(0), nb_transpositions);
-}
-
-} // end namespace internal
-
-template<typename MatrixType>
-void PartialPivLU<MatrixType>::compute()
-{
-  check_template_parameters();
-
-  // the row permutation is stored as int indices, so just to be sure:
-  eigen_assert(m_lu.rows()<NumTraits<int>::highest());
-
-  if(m_lu.cols()>0)
-    m_l1_norm = m_lu.cwiseAbs().colwise().sum().maxCoeff();
-  else
-    m_l1_norm = RealScalar(0);
-
-  eigen_assert(m_lu.rows() == m_lu.cols() && "PartialPivLU is only for square (and moreover invertible) matrices");
-  const Index size = m_lu.rows();
-
-  m_rowsTranspositions.resize(size);
-
-  typename TranspositionType::StorageIndex nb_transpositions;
-  internal::partial_lu_inplace(m_lu, m_rowsTranspositions, nb_transpositions);
-  m_det_p = (nb_transpositions%2) ? -1 : 1;
-
-  m_p = m_rowsTranspositions;
-
-  m_isInitialized = true;
-}
-
-template<typename MatrixType>
-typename PartialPivLU<MatrixType>::Scalar PartialPivLU<MatrixType>::determinant() const
-{
-  eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
-  return Scalar(m_det_p) * m_lu.diagonal().prod();
-}
-
-/** \returns the matrix represented by the decomposition,
- * i.e., it returns the product: P^{-1} L U.
- * This function is provided for debug purpose. */
-template<typename MatrixType>
-MatrixType PartialPivLU<MatrixType>::reconstructedMatrix() const
-{
-  eigen_assert(m_isInitialized && "LU is not initialized.");
-  // LU
-  MatrixType res = m_lu.template triangularView<UnitLower>().toDenseMatrix()
-                 * m_lu.template triangularView<Upper>();
-
-  // P^{-1}(LU)
-  res = m_p.inverse() * res;
-
-  return res;
-}
-
-/***** Implementation details *****************************************************/
-
-namespace internal {
-
-/***** Implementation of inverse() *****************************************************/
-template<typename DstXprType, typename MatrixType>
-struct Assignment<DstXprType, Inverse<PartialPivLU<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename PartialPivLU<MatrixType>::Scalar>, Dense2Dense>
-{
-  typedef PartialPivLU<MatrixType> LuType;
-  typedef Inverse<LuType> SrcXprType;
-  static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename LuType::Scalar> &)
-  {
-    dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
-  }
-};
-} // end namespace internal
-
-/******** MatrixBase methods *******/
-
-/** \lu_module
-  *
-  * \return the partial-pivoting LU decomposition of \c *this.
-  *
-  * \sa class PartialPivLU
-  */
-template<typename Derived>
-inline const PartialPivLU<typename MatrixBase<Derived>::PlainObject>
-MatrixBase<Derived>::partialPivLu() const
-{
-  return PartialPivLU<PlainObject>(eval());
-}
-
-/** \lu_module
-  *
-  * Synonym of partialPivLu().
-  *
-  * \return the partial-pivoting LU decomposition of \c *this.
-  *
-  * \sa class PartialPivLU
-  */
-template<typename Derived>
-inline const PartialPivLU<typename MatrixBase<Derived>::PlainObject>
-MatrixBase<Derived>::lu() const
-{
-  return PartialPivLU<PlainObject>(eval());
-}
-
-} // end namespace Eigen
-
-#endif // EIGEN_PARTIALLU_H

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h

@@ -1,83 +0,0 @@
-/*
- Copyright (c) 2011, Intel Corporation. All rights reserved.
-
- Redistribution and use in source and binary forms, with or without modification,
- are permitted provided that the following conditions are met:
-
- * Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
- * Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
- * Neither the name of Intel Corporation nor the names of its contributors may
-   be used to endorse or promote products derived from this software without
-   specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
- ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
- ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
- ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
- ********************************************************************************
- *   Content : Eigen bindings to LAPACKe
- *     LU decomposition with partial pivoting based on LAPACKE_?getrf function.
- ********************************************************************************
-*/
-
-#ifndef EIGEN_PARTIALLU_LAPACK_H
-#define EIGEN_PARTIALLU_LAPACK_H
-
-namespace Eigen { 
-
-namespace internal {
-
-/** \internal Specialization for the data types supported by LAPACKe */
-
-#define EIGEN_LAPACKE_LU_PARTPIV(EIGTYPE, LAPACKE_TYPE, LAPACKE_PREFIX) \
-template<int StorageOrder> \
-struct partial_lu_impl<EIGTYPE, StorageOrder, lapack_int> \
-{ \
-  /* \internal performs the LU decomposition in-place of the matrix represented */ \
-  static lapack_int blocked_lu(Index rows, Index cols, EIGTYPE* lu_data, Index luStride, lapack_int* row_transpositions, lapack_int& nb_transpositions, lapack_int maxBlockSize=256) \
-  { \
-    EIGEN_UNUSED_VARIABLE(maxBlockSize);\
-    lapack_int matrix_order, first_zero_pivot; \
-    lapack_int m, n, lda, *ipiv, info; \
-    EIGTYPE* a; \
-/* Set up parameters for ?getrf */ \
-    matrix_order = StorageOrder==RowMajor ? LAPACK_ROW_MAJOR : LAPACK_COL_MAJOR; \
-    lda = convert_index<lapack_int>(luStride); \
-    a = lu_data; \
-    ipiv = row_transpositions; \
-    m = convert_index<lapack_int>(rows); \
-    n = convert_index<lapack_int>(cols); \
-    nb_transpositions = 0; \
-\
-    info = LAPACKE_##LAPACKE_PREFIX##getrf( matrix_order, m, n, (LAPACKE_TYPE*)a, lda, ipiv ); \
-\
-    for(int i=0;i<m;i++) { ipiv[i]--; if (ipiv[i]!=i) nb_transpositions++; } \
-\
-    eigen_assert(info >= 0); \
-/* something should be done with nb_transpositions */ \
-\
-    first_zero_pivot = info; \
-    return first_zero_pivot; \
-  } \
-};
-
-EIGEN_LAPACKE_LU_PARTPIV(double, double, d)
-EIGEN_LAPACKE_LU_PARTPIV(float, float, s)
-EIGEN_LAPACKE_LU_PARTPIV(dcomplex, lapack_complex_double, z)
-EIGEN_LAPACKE_LU_PARTPIV(scomplex, lapack_complex_float,  c)
-
-} // end namespace internal
-
-} // end namespace Eigen
-
-#endif // EIGEN_PARTIALLU_LAPACK_H