sequenzo 0.1.17__cp311-cp311-win_amd64.whl → 0.1.19__cp311-cp311-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,738 +0,0 @@
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- // This file is part of Eigen, a lightweight C++ template library
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- // for linear algebra.
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- //
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- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
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- //
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- // This Source Code Form is subject to the terms of the Mozilla
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- // Public License v. 2.0. If a copy of the MPL was not distributed
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- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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-
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- #ifndef EIGEN_CXX11_TENSOR_TENSOR_INDEX_LIST_H
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- #define EIGEN_CXX11_TENSOR_TENSOR_INDEX_LIST_H
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-
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-
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- #if EIGEN_HAS_CONSTEXPR && EIGEN_HAS_VARIADIC_TEMPLATES
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-
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- #define EIGEN_HAS_INDEX_LIST
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-
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- namespace Eigen {
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-
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- /** \internal
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- *
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- * \class TensorIndexList
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- * \ingroup CXX11_Tensor_Module
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- *
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- * \brief Set of classes used to encode a set of Tensor dimensions/indices.
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- *
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- * The indices in the list can be known at compile time or at runtime. A mix
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- * of static and dynamic indices can also be provided if needed. The tensor
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- * code will attempt to take advantage of the indices that are known at
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- * compile time to optimize the code it generates.
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- *
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- * This functionality requires a c++11 compliant compiler. If your compiler
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- * is older you need to use arrays of indices instead.
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- *
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- * Several examples are provided in the cxx11_tensor_index_list.cpp file.
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- *
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- * \sa Tensor
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- */
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-
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- template <Index n>
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- struct type2index {
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- static const Index value = n;
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- EIGEN_DEVICE_FUNC constexpr operator Index() const { return n; }
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- EIGEN_DEVICE_FUNC void set(Index val) {
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- eigen_assert(val == n);
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- }
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- };
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-
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- // This can be used with IndexPairList to get compile-time constant pairs,
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- // such as IndexPairList<type2indexpair<1,2>, type2indexpair<3,4>>().
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- template <Index f, Index s>
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- struct type2indexpair {
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- static const Index first = f;
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- static const Index second = s;
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-
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- constexpr EIGEN_DEVICE_FUNC operator IndexPair<Index>() const {
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- return IndexPair<Index>(f, s);
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- }
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-
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- EIGEN_DEVICE_FUNC void set(const IndexPair<Index>& val) {
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- eigen_assert(val.first == f);
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- eigen_assert(val.second == s);
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- }
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- };
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-
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-
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- template<Index n> struct NumTraits<type2index<n> >
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- {
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- typedef Index Real;
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- enum {
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- IsComplex = 0,
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- RequireInitialization = false,
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- ReadCost = 1,
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- AddCost = 1,
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- MulCost = 1
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- };
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-
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- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real epsilon() { return 0; }
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- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real dummy_precision() { return 0; }
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- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real highest() { return n; }
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- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real lowest() { return n; }
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- };
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-
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- namespace internal {
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- template <typename T>
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- EIGEN_DEVICE_FUNC void update_value(T& val, Index new_val) {
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- val = internal::convert_index<T>(new_val);
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- }
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- template <Index n>
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- EIGEN_DEVICE_FUNC void update_value(type2index<n>& val, Index new_val) {
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- val.set(new_val);
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- }
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-
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- template <typename T>
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- EIGEN_DEVICE_FUNC void update_value(T& val, IndexPair<Index> new_val) {
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- val = new_val;
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- }
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- template <Index f, Index s>
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- EIGEN_DEVICE_FUNC void update_value(type2indexpair<f, s>& val, IndexPair<Index> new_val) {
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- val.set(new_val);
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- }
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-
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-
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- template <typename T>
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- struct is_compile_time_constant {
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- static constexpr bool value = false;
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- };
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-
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- template <Index idx>
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- struct is_compile_time_constant<type2index<idx> > {
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- static constexpr bool value = true;
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- };
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- template <Index idx>
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- struct is_compile_time_constant<const type2index<idx> > {
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- static constexpr bool value = true;
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- };
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- template <Index idx>
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- struct is_compile_time_constant<type2index<idx>& > {
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- static constexpr bool value = true;
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- };
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- template <Index idx>
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- struct is_compile_time_constant<const type2index<idx>& > {
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- static constexpr bool value = true;
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- };
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-
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- template <Index f, Index s>
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- struct is_compile_time_constant<type2indexpair<f, s> > {
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- static constexpr bool value = true;
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- };
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- template <Index f, Index s>
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- struct is_compile_time_constant<const type2indexpair<f, s> > {
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- static constexpr bool value = true;
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- };
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- template <Index f, Index s>
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- struct is_compile_time_constant<type2indexpair<f, s>& > {
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- static constexpr bool value = true;
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- };
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- template <Index f, Index s>
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- struct is_compile_time_constant<const type2indexpair<f, s>& > {
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- static constexpr bool value = true;
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- };
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-
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-
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- template<typename... T>
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- struct IndexTuple;
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-
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- template<typename T, typename... O>
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- struct IndexTuple<T, O...> {
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- EIGEN_DEVICE_FUNC constexpr IndexTuple() : head(), others() { }
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- EIGEN_DEVICE_FUNC constexpr IndexTuple(const T& v, const O... o) : head(v), others(o...) { }
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-
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- constexpr static int count = 1 + sizeof...(O);
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- T head;
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- IndexTuple<O...> others;
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- typedef T Head;
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- typedef IndexTuple<O...> Other;
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- };
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-
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- template<typename T>
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- struct IndexTuple<T> {
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- EIGEN_DEVICE_FUNC constexpr IndexTuple() : head() { }
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- EIGEN_DEVICE_FUNC constexpr IndexTuple(const T& v) : head(v) { }
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-
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- constexpr static int count = 1;
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- T head;
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- typedef T Head;
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- };
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-
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-
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- template<int N, typename... T>
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- struct IndexTupleExtractor;
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-
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- template<int N, typename T, typename... O>
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- struct IndexTupleExtractor<N, T, O...> {
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-
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- typedef typename IndexTupleExtractor<N-1, O...>::ValType ValType;
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-
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- EIGEN_DEVICE_FUNC static constexpr ValType& get_val(IndexTuple<T, O...>& val) {
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- return IndexTupleExtractor<N-1, O...>::get_val(val.others);
180
- }
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-
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- EIGEN_DEVICE_FUNC static constexpr const ValType& get_val(const IndexTuple<T, O...>& val) {
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- return IndexTupleExtractor<N-1, O...>::get_val(val.others);
184
- }
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- template <typename V>
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- EIGEN_DEVICE_FUNC static void set_val(IndexTuple<T, O...>& val, V& new_val) {
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- IndexTupleExtractor<N-1, O...>::set_val(val.others, new_val);
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- }
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-
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- };
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-
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- template<typename T, typename... O>
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- struct IndexTupleExtractor<0, T, O...> {
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-
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- typedef T ValType;
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-
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- EIGEN_DEVICE_FUNC static constexpr ValType& get_val(IndexTuple<T, O...>& val) {
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- return val.head;
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- }
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- EIGEN_DEVICE_FUNC static constexpr const ValType& get_val(const IndexTuple<T, O...>& val) {
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- return val.head;
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- }
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- template <typename V>
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- EIGEN_DEVICE_FUNC static void set_val(IndexTuple<T, O...>& val, V& new_val) {
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- val.head = new_val;
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- }
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- };
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-
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-
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-
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- template <int N, typename T, typename... O>
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- EIGEN_DEVICE_FUNC constexpr typename IndexTupleExtractor<N, T, O...>::ValType& array_get(IndexTuple<T, O...>& tuple) {
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- return IndexTupleExtractor<N, T, O...>::get_val(tuple);
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- }
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- template <int N, typename T, typename... O>
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- EIGEN_DEVICE_FUNC constexpr const typename IndexTupleExtractor<N, T, O...>::ValType& array_get(const IndexTuple<T, O...>& tuple) {
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- return IndexTupleExtractor<N, T, O...>::get_val(tuple);
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- }
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- template <typename T, typename... O>
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- struct array_size<IndexTuple<T, O...> > {
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- static const size_t value = IndexTuple<T, O...>::count;
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- };
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- template <typename T, typename... O>
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- struct array_size<const IndexTuple<T, O...> > {
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- static const size_t value = IndexTuple<T, O...>::count;
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- };
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-
228
-
229
-
230
-
231
- template <Index Idx, typename ValueT>
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- struct tuple_coeff {
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- template <typename... T>
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- EIGEN_DEVICE_FUNC static constexpr ValueT get(const Index i, const IndexTuple<T...>& t) {
235
- // return array_get<Idx>(t) * (i == Idx) + tuple_coeff<Idx-1>::get(i, t) * (i != Idx);
236
- return (i == Idx ? array_get<Idx>(t) : tuple_coeff<Idx-1, ValueT>::get(i, t));
237
- }
238
- template <typename... T>
239
- EIGEN_DEVICE_FUNC static void set(const Index i, IndexTuple<T...>& t, const ValueT& value) {
240
- if (i == Idx) {
241
- update_value(array_get<Idx>(t), value);
242
- } else {
243
- tuple_coeff<Idx-1, ValueT>::set(i, t, value);
244
- }
245
- }
246
-
247
- template <typename... T>
248
- EIGEN_DEVICE_FUNC static constexpr bool value_known_statically(const Index i, const IndexTuple<T...>& t) {
249
- return ((i == Idx) & is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value) ||
250
- tuple_coeff<Idx-1, ValueT>::value_known_statically(i, t);
251
- }
252
-
253
- template <typename... T>
254
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_known_statically(const IndexTuple<T...>& t) {
255
- return is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value &&
256
- tuple_coeff<Idx-1, ValueT>::values_up_to_known_statically(t);
257
- }
258
-
259
- template <typename... T>
260
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_statically_known_to_increase(const IndexTuple<T...>& t) {
261
- return is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value &&
262
- is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value &&
263
- array_get<Idx>(t) > array_get<Idx-1>(t) &&
264
- tuple_coeff<Idx-1, ValueT>::values_up_to_statically_known_to_increase(t);
265
- }
266
- };
267
-
268
- template <typename ValueT>
269
- struct tuple_coeff<0, ValueT> {
270
- template <typename... T>
271
- EIGEN_DEVICE_FUNC static constexpr ValueT get(const Index /*i*/, const IndexTuple<T...>& t) {
272
- // eigen_assert (i == 0); // gcc fails to compile assertions in constexpr
273
- return array_get<0>(t)/* * (i == 0)*/;
274
- }
275
- template <typename... T>
276
- EIGEN_DEVICE_FUNC static void set(const Index i, IndexTuple<T...>& t, const ValueT value) {
277
- eigen_assert (i == 0);
278
- update_value(array_get<0>(t), value);
279
- }
280
- template <typename... T>
281
- EIGEN_DEVICE_FUNC static constexpr bool value_known_statically(const Index i, const IndexTuple<T...>&) {
282
- return is_compile_time_constant<typename IndexTupleExtractor<0, T...>::ValType>::value && (i == 0);
283
- }
284
-
285
- template <typename... T>
286
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_known_statically(const IndexTuple<T...>&) {
287
- return is_compile_time_constant<typename IndexTupleExtractor<0, T...>::ValType>::value;
288
- }
289
-
290
- template <typename... T>
291
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_statically_known_to_increase(const IndexTuple<T...>&) {
292
- return true;
293
- }
294
- };
295
- } // namespace internal
296
-
297
-
298
-
299
- template<typename FirstType, typename... OtherTypes>
300
- struct IndexList : internal::IndexTuple<FirstType, OtherTypes...> {
301
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC constexpr Index operator[] (const Index i) const {
302
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::get(i, *this);
303
- }
304
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC constexpr Index get(const Index i) const {
305
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::get(i, *this);
306
- }
307
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC void set(const Index i, const Index value) {
308
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::set(i, *this, value);
309
- }
310
-
311
- EIGEN_DEVICE_FUNC constexpr IndexList(const internal::IndexTuple<FirstType, OtherTypes...>& other) : internal::IndexTuple<FirstType, OtherTypes...>(other) { }
312
- EIGEN_DEVICE_FUNC constexpr IndexList(FirstType& first, OtherTypes... other) : internal::IndexTuple<FirstType, OtherTypes...>(first, other...) { }
313
- EIGEN_DEVICE_FUNC constexpr IndexList() : internal::IndexTuple<FirstType, OtherTypes...>() { }
314
-
315
- EIGEN_DEVICE_FUNC constexpr bool value_known_statically(const Index i) const {
316
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::value_known_statically(i, *this);
317
- }
318
- EIGEN_DEVICE_FUNC constexpr bool all_values_known_statically() const {
319
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::values_up_to_known_statically(*this);
320
- }
321
-
322
- EIGEN_DEVICE_FUNC constexpr bool values_statically_known_to_increase() const {
323
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::values_up_to_statically_known_to_increase(*this);
324
- }
325
- };
326
-
327
- template <typename FirstType, typename... OtherTypes>
328
- std::ostream& operator<<(std::ostream& os,
329
- const IndexList<FirstType, OtherTypes...>& dims) {
330
- os << "[";
331
- for (size_t i = 0; i < 1 + sizeof...(OtherTypes); ++i) {
332
- if (i > 0) os << ", ";
333
- os << dims[i];
334
- }
335
- os << "]";
336
- return os;
337
- }
338
-
339
- template<typename FirstType, typename... OtherTypes>
340
- constexpr IndexList<FirstType, OtherTypes...> make_index_list(FirstType val1, OtherTypes... other_vals) {
341
- return IndexList<FirstType, OtherTypes...>(val1, other_vals...);
342
- }
343
-
344
-
345
- template<typename FirstType, typename... OtherTypes>
346
- struct IndexPairList : internal::IndexTuple<FirstType, OtherTypes...> {
347
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC constexpr IndexPair<Index> operator[] (const Index i) const {
348
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, IndexPair<Index>>::get(i, *this);
349
- }
350
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC void set(const Index i, const IndexPair<Index> value) {
351
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...>>::value-1, IndexPair<Index> >::set(i, *this, value);
352
- }
353
-
354
- EIGEN_DEVICE_FUNC constexpr IndexPairList(const internal::IndexTuple<FirstType, OtherTypes...>& other) : internal::IndexTuple<FirstType, OtherTypes...>(other) { }
355
- EIGEN_DEVICE_FUNC constexpr IndexPairList() : internal::IndexTuple<FirstType, OtherTypes...>() { }
356
-
357
- EIGEN_DEVICE_FUNC constexpr bool value_known_statically(const Index i) const {
358
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::value_known_statically(i, *this);
359
- }
360
- };
361
-
362
- namespace internal {
363
-
364
- template<typename FirstType, typename... OtherTypes>
365
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index array_prod(const IndexList<FirstType, OtherTypes...>& sizes) {
366
- Index result = 1;
367
- EIGEN_UNROLL_LOOP
368
- for (size_t i = 0; i < array_size<IndexList<FirstType, OtherTypes...> >::value; ++i) {
369
- result *= sizes[i];
370
- }
371
- return result;
372
- }
373
-
374
- template<typename FirstType, typename... OtherTypes> struct array_size<IndexList<FirstType, OtherTypes...> > {
375
- static const size_t value = array_size<IndexTuple<FirstType, OtherTypes...> >::value;
376
- };
377
- template<typename FirstType, typename... OtherTypes> struct array_size<const IndexList<FirstType, OtherTypes...> > {
378
- static const size_t value = array_size<IndexTuple<FirstType, OtherTypes...> >::value;
379
- };
380
-
381
- template<typename FirstType, typename... OtherTypes> struct array_size<IndexPairList<FirstType, OtherTypes...> > {
382
- static const size_t value = std::tuple_size<std::tuple<FirstType, OtherTypes...> >::value;
383
- };
384
- template<typename FirstType, typename... OtherTypes> struct array_size<const IndexPairList<FirstType, OtherTypes...> > {
385
- static const size_t value = std::tuple_size<std::tuple<FirstType, OtherTypes...> >::value;
386
- };
387
-
388
- template<Index N, typename FirstType, typename... OtherTypes> EIGEN_DEVICE_FUNC constexpr Index array_get(IndexList<FirstType, OtherTypes...>& a) {
389
- return IndexTupleExtractor<N, FirstType, OtherTypes...>::get_val(a);
390
- }
391
- template<Index N, typename FirstType, typename... OtherTypes> EIGEN_DEVICE_FUNC constexpr Index array_get(const IndexList<FirstType, OtherTypes...>& a) {
392
- return IndexTupleExtractor<N, FirstType, OtherTypes...>::get_val(a);
393
- }
394
-
395
- template <typename T>
396
- struct index_known_statically_impl {
397
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index) {
398
- return false;
399
- }
400
- };
401
-
402
- template <typename FirstType, typename... OtherTypes>
403
- struct index_known_statically_impl<IndexList<FirstType, OtherTypes...> > {
404
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i) {
405
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i);
406
- }
407
- };
408
-
409
- template <typename FirstType, typename... OtherTypes>
410
- struct index_known_statically_impl<const IndexList<FirstType, OtherTypes...> > {
411
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i) {
412
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i);
413
- }
414
- };
415
-
416
-
417
- template <typename T>
418
- struct all_indices_known_statically_impl {
419
- static constexpr bool run() {
420
- return false;
421
- }
422
- };
423
-
424
- template <typename FirstType, typename... OtherTypes>
425
- struct all_indices_known_statically_impl<IndexList<FirstType, OtherTypes...> > {
426
- EIGEN_DEVICE_FUNC static constexpr bool run() {
427
- return IndexList<FirstType, OtherTypes...>().all_values_known_statically();
428
- }
429
- };
430
-
431
- template <typename FirstType, typename... OtherTypes>
432
- struct all_indices_known_statically_impl<const IndexList<FirstType, OtherTypes...> > {
433
- EIGEN_DEVICE_FUNC static constexpr bool run() {
434
- return IndexList<FirstType, OtherTypes...>().all_values_known_statically();
435
- }
436
- };
437
-
438
-
439
- template <typename T>
440
- struct indices_statically_known_to_increase_impl {
441
- EIGEN_DEVICE_FUNC static constexpr bool run() {
442
- return false;
443
- }
444
- };
445
-
446
- template <typename FirstType, typename... OtherTypes>
447
- struct indices_statically_known_to_increase_impl<IndexList<FirstType, OtherTypes...> > {
448
- EIGEN_DEVICE_FUNC static constexpr bool run() {
449
- return Eigen::IndexList<FirstType, OtherTypes...>().values_statically_known_to_increase();
450
- }
451
- };
452
-
453
- template <typename FirstType, typename... OtherTypes>
454
- struct indices_statically_known_to_increase_impl<const IndexList<FirstType, OtherTypes...> > {
455
- EIGEN_DEVICE_FUNC static constexpr bool run() {
456
- return Eigen::IndexList<FirstType, OtherTypes...>().values_statically_known_to_increase();
457
- }
458
- };
459
-
460
-
461
- template <typename Tx>
462
- struct index_statically_eq_impl {
463
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
464
- return false;
465
- }
466
- };
467
-
468
- template <typename FirstType, typename... OtherTypes>
469
- struct index_statically_eq_impl<IndexList<FirstType, OtherTypes...> > {
470
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
471
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
472
- (IndexList<FirstType, OtherTypes...>().get(i) == value);
473
- }
474
- };
475
-
476
- template <typename FirstType, typename... OtherTypes>
477
- struct index_statically_eq_impl<const IndexList<FirstType, OtherTypes...> > {
478
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
479
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
480
- (IndexList<FirstType, OtherTypes...>().get(i) == value);
481
- }
482
- };
483
-
484
-
485
- template <typename T>
486
- struct index_statically_ne_impl {
487
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
488
- return false;
489
- }
490
- };
491
-
492
- template <typename FirstType, typename... OtherTypes>
493
- struct index_statically_ne_impl<IndexList<FirstType, OtherTypes...> > {
494
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
495
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
496
- (IndexList<FirstType, OtherTypes...>().get(i) != value);
497
- }
498
- };
499
-
500
- template <typename FirstType, typename... OtherTypes>
501
- struct index_statically_ne_impl<const IndexList<FirstType, OtherTypes...> > {
502
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
503
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
504
- (IndexList<FirstType, OtherTypes...>().get(i) != value);
505
- }
506
- };
507
-
508
-
509
- template <typename T>
510
- struct index_statically_gt_impl {
511
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
512
- return false;
513
- }
514
- };
515
-
516
- template <typename FirstType, typename... OtherTypes>
517
- struct index_statically_gt_impl<IndexList<FirstType, OtherTypes...> > {
518
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
519
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
520
- (IndexList<FirstType, OtherTypes...>().get(i) > value);
521
- }
522
- };
523
-
524
- template <typename FirstType, typename... OtherTypes>
525
- struct index_statically_gt_impl<const IndexList<FirstType, OtherTypes...> > {
526
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
527
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
528
- (IndexList<FirstType, OtherTypes...>().get(i) > value);
529
- }
530
- };
531
-
532
-
533
-
534
- template <typename T>
535
- struct index_statically_lt_impl {
536
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
537
- return false;
538
- }
539
- };
540
-
541
- template <typename FirstType, typename... OtherTypes>
542
- struct index_statically_lt_impl<IndexList<FirstType, OtherTypes...> > {
543
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
544
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
545
- (IndexList<FirstType, OtherTypes...>().get(i) < value);
546
- }
547
- };
548
-
549
- template <typename FirstType, typename... OtherTypes>
550
- struct index_statically_lt_impl<const IndexList<FirstType, OtherTypes...> > {
551
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
552
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
553
- (IndexList<FirstType, OtherTypes...>().get(i) < value);
554
- }
555
- };
556
-
557
-
558
-
559
- template <typename Tx>
560
- struct index_pair_first_statically_eq_impl {
561
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
562
- return false;
563
- }
564
- };
565
-
566
- template <typename FirstType, typename... OtherTypes>
567
- struct index_pair_first_statically_eq_impl<IndexPairList<FirstType, OtherTypes...> > {
568
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
569
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
570
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).first == value);
571
- }
572
- };
573
-
574
- template <typename FirstType, typename... OtherTypes>
575
- struct index_pair_first_statically_eq_impl<const IndexPairList<FirstType, OtherTypes...> > {
576
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
577
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
578
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).first == value);
579
- }
580
- };
581
-
582
-
583
-
584
- template <typename Tx>
585
- struct index_pair_second_statically_eq_impl {
586
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
587
- return false;
588
- }
589
- };
590
-
591
- template <typename FirstType, typename... OtherTypes>
592
- struct index_pair_second_statically_eq_impl<IndexPairList<FirstType, OtherTypes...> > {
593
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
594
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
595
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).second == value);
596
- }
597
- };
598
-
599
- template <typename FirstType, typename... OtherTypes>
600
- struct index_pair_second_statically_eq_impl<const IndexPairList<FirstType, OtherTypes...> > {
601
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
602
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
603
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).second == value);
604
- }
605
- };
606
-
607
-
608
- } // end namespace internal
609
- } // end namespace Eigen
610
-
611
- #else
612
-
613
- namespace Eigen {
614
- namespace internal {
615
-
616
- template <typename T>
617
- struct index_known_statically_impl {
618
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(const Index) {
619
- return false;
620
- }
621
- };
622
-
623
- template <typename T>
624
- struct all_indices_known_statically_impl {
625
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run() {
626
- return false;
627
- }
628
- };
629
-
630
- template <typename T>
631
- struct indices_statically_known_to_increase_impl {
632
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run() {
633
- return false;
634
- }
635
- };
636
-
637
- template <typename T>
638
- struct index_statically_eq_impl {
639
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
640
- return false;
641
- }
642
- };
643
-
644
- template <typename T>
645
- struct index_statically_ne_impl {
646
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
647
- return false;
648
- }
649
- };
650
-
651
- template <typename T>
652
- struct index_statically_gt_impl {
653
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
654
- return false;
655
- }
656
- };
657
-
658
- template <typename T>
659
- struct index_statically_lt_impl {
660
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
661
- return false;
662
- }
663
- };
664
-
665
- template <typename Tx>
666
- struct index_pair_first_statically_eq_impl {
667
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
668
- return false;
669
- }
670
- };
671
-
672
- template <typename Tx>
673
- struct index_pair_second_statically_eq_impl {
674
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
675
- return false;
676
- }
677
- };
678
-
679
-
680
-
681
- } // end namespace internal
682
- } // end namespace Eigen
683
-
684
- #endif
685
-
686
-
687
- namespace Eigen {
688
- namespace internal {
689
- template <typename T>
690
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_known_statically(Index i) {
691
- return index_known_statically_impl<T>::run(i);
692
- }
693
-
694
- template <typename T>
695
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool all_indices_known_statically() {
696
- return all_indices_known_statically_impl<T>::run();
697
- }
698
-
699
- template <typename T>
700
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool indices_statically_known_to_increase() {
701
- return indices_statically_known_to_increase_impl<T>::run();
702
- }
703
-
704
- template <typename T>
705
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_eq(Index i, Index value) {
706
- return index_statically_eq_impl<T>::run(i, value);
707
- }
708
-
709
- template <typename T>
710
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_ne(Index i, Index value) {
711
- return index_statically_ne_impl<T>::run(i, value);
712
- }
713
-
714
- template <typename T>
715
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_gt(Index i, Index value) {
716
- return index_statically_gt_impl<T>::run(i, value);
717
- }
718
-
719
- template <typename T>
720
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_lt(Index i, Index value) {
721
- return index_statically_lt_impl<T>::run(i, value);
722
- }
723
-
724
- template <typename T>
725
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_pair_first_statically_eq(Index i, Index value) {
726
- return index_pair_first_statically_eq_impl<T>::run(i, value);
727
- }
728
-
729
- template <typename T>
730
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_pair_second_statically_eq(Index i, Index value) {
731
- return index_pair_second_statically_eq_impl<T>::run(i, value);
732
- }
733
-
734
- } // end namespace internal
735
- } // end namespace Eigen
736
-
737
-
738
- #endif // EIGEN_CXX11_TENSOR_TENSOR_INDEX_LIST_H