sequenzo 0.1.17__cp311-cp311-win_amd64.whl → 0.1.19__cp311-cp311-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,207 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_GPUHELPER_H
11
- #define EIGEN_GPUHELPER_H
12
-
13
- #include <Eigen/Geometry>
14
- #include <GL/gl.h>
15
- #include <vector>
16
-
17
- using namespace Eigen;
18
-
19
- typedef Vector4f Color;
20
-
21
- class GpuHelper
22
- {
23
- public:
24
-
25
- GpuHelper();
26
-
27
- ~GpuHelper();
28
-
29
- enum ProjectionMode2D { PM_Normalized = 1, PM_Viewport = 2 };
30
- void pushProjectionMode2D(ProjectionMode2D pm);
31
- void popProjectionMode2D();
32
-
33
- /** Multiply the OpenGL matrix \a matrixTarget by the matrix \a mat.
34
- Essentially, this helper function automatically calls glMatrixMode(matrixTarget) if required
35
- and does a proper call to the right glMultMatrix*() function according to the scalar type
36
- and storage order.
37
- \warning glMatrixMode() must never be called directly. If your're unsure, use forceMatrixMode().
38
- \sa Matrix, loadMatrix(), forceMatrixMode()
39
- */
40
- template<typename Scalar, int _Flags>
41
- void multMatrix(const Matrix<Scalar,4,4, _Flags, 4,4>& mat, GLenum matrixTarget);
42
-
43
- /** Load the matrix \a mat to the OpenGL matrix \a matrixTarget.
44
- Essentially, this helper function automatically calls glMatrixMode(matrixTarget) if required
45
- and does a proper call to the right glLoadMatrix*() or glLoadIdentity() function according to the scalar type
46
- and storage order.
47
- \warning glMatrixMode() must never be called directly. If your're unsure, use forceMatrixMode().
48
- \sa Matrix, multMatrix(), forceMatrixMode()
49
- */
50
- template<typename Scalar, int _Flags>
51
- void loadMatrix(const Eigen::Matrix<Scalar,4,4, _Flags, 4,4>& mat, GLenum matrixTarget);
52
-
53
- template<typename Scalar, typename Derived>
54
- void loadMatrix(
55
- const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<Scalar>,Derived>&,
56
- GLenum matrixTarget);
57
-
58
- /** Make the matrix \a matrixTarget the current OpenGL matrix target.
59
- Call this function before loadMatrix() or multMatrix() if you cannot guarantee that glMatrixMode()
60
- has never been called after the last loadMatrix() or multMatrix() calls.
61
- \todo provides a debug mode checking the sanity of the cached matrix mode.
62
- */
63
- inline void forceMatrixTarget(GLenum matrixTarget) {glMatrixMode(mCurrentMatrixTarget=matrixTarget);}
64
-
65
- inline void setMatrixTarget(GLenum matrixTarget);
66
-
67
- /** Push the OpenGL matrix \a matrixTarget and load \a mat.
68
- */
69
- template<typename Scalar, int _Flags>
70
- inline void pushMatrix(const Matrix<Scalar,4,4, _Flags, 4,4>& mat, GLenum matrixTarget);
71
-
72
- template<typename Scalar, typename Derived>
73
- void pushMatrix(
74
- const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<Scalar>,Derived>&,
75
- GLenum matrixTarget);
76
-
77
- /** Push and clone the OpenGL matrix \a matrixTarget
78
- */
79
- inline void pushMatrix(GLenum matrixTarget);
80
-
81
- /** Pop the OpenGL matrix \a matrixTarget
82
- */
83
- inline void popMatrix(GLenum matrixTarget);
84
-
85
- void drawVector(const Vector3f& position, const Vector3f& vec, const Color& color, float aspect = 50.);
86
- void drawVectorBox(const Vector3f& position, const Vector3f& vec, const Color& color, float aspect = 50.);
87
- void drawUnitCube(void);
88
- void drawUnitSphere(int level=0);
89
-
90
- /// draw the \a nofElement first elements
91
- inline void draw(GLenum mode, uint nofElement);
92
-
93
- /// draw a range of elements
94
- inline void draw(GLenum mode, uint start, uint end);
95
-
96
- /// draw an indexed subset
97
- inline void draw(GLenum mode, const std::vector<uint>* pIndexes);
98
-
99
- protected:
100
-
101
- void update(void);
102
-
103
- GLuint mColorBufferId;
104
- int mVpWidth, mVpHeight;
105
- GLenum mCurrentMatrixTarget;
106
- bool mInitialized;
107
- };
108
-
109
- /** Singleton shortcut
110
- */
111
- extern GpuHelper gpu;
112
-
113
-
114
- /** \internal
115
- */
116
- template<bool RowMajor, int _Flags> struct GlMatrixHelper;
117
-
118
- template<int _Flags> struct GlMatrixHelper<false,_Flags>
119
- {
120
- static void loadMatrix(const Matrix<float, 4,4, _Flags, 4,4>& mat) { glLoadMatrixf(mat.data()); }
121
- static void loadMatrix(const Matrix<double,4,4, _Flags, 4,4>& mat) { glLoadMatrixd(mat.data()); }
122
- static void multMatrix(const Matrix<float, 4,4, _Flags, 4,4>& mat) { glMultMatrixf(mat.data()); }
123
- static void multMatrix(const Matrix<double,4,4, _Flags, 4,4>& mat) { glMultMatrixd(mat.data()); }
124
- };
125
-
126
- template<int _Flags> struct GlMatrixHelper<true,_Flags>
127
- {
128
- static void loadMatrix(const Matrix<float, 4,4, _Flags, 4,4>& mat) { glLoadMatrixf(mat.transpose().eval().data()); }
129
- static void loadMatrix(const Matrix<double,4,4, _Flags, 4,4>& mat) { glLoadMatrixd(mat.transpose().eval().data()); }
130
- static void multMatrix(const Matrix<float, 4,4, _Flags, 4,4>& mat) { glMultMatrixf(mat.transpose().eval().data()); }
131
- static void multMatrix(const Matrix<double,4,4, _Flags, 4,4>& mat) { glMultMatrixd(mat.transpose().eval().data()); }
132
- };
133
-
134
- inline void GpuHelper::setMatrixTarget(GLenum matrixTarget)
135
- {
136
- if (matrixTarget != mCurrentMatrixTarget)
137
- glMatrixMode(mCurrentMatrixTarget=matrixTarget);
138
- }
139
-
140
- template<typename Scalar, int _Flags>
141
- void GpuHelper::multMatrix(const Matrix<Scalar,4,4, _Flags, 4,4>& mat, GLenum matrixTarget)
142
- {
143
- setMatrixTarget(matrixTarget);
144
- GlMatrixHelper<_Flags&Eigen::RowMajorBit, _Flags>::multMatrix(mat);
145
- }
146
-
147
- template<typename Scalar, typename Derived>
148
- void GpuHelper::loadMatrix(
149
- const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<Scalar>,Derived>&,
150
- GLenum matrixTarget)
151
- {
152
- setMatrixTarget(matrixTarget);
153
- glLoadIdentity();
154
- }
155
-
156
- template<typename Scalar, int _Flags>
157
- void GpuHelper::loadMatrix(const Eigen::Matrix<Scalar,4,4, _Flags, 4,4>& mat, GLenum matrixTarget)
158
- {
159
- setMatrixTarget(matrixTarget);
160
- GlMatrixHelper<(_Flags&Eigen::RowMajorBit)!=0, _Flags>::loadMatrix(mat);
161
- }
162
-
163
- inline void GpuHelper::pushMatrix(GLenum matrixTarget)
164
- {
165
- setMatrixTarget(matrixTarget);
166
- glPushMatrix();
167
- }
168
-
169
- template<typename Scalar, int _Flags>
170
- inline void GpuHelper::pushMatrix(const Matrix<Scalar,4,4, _Flags, 4,4>& mat, GLenum matrixTarget)
171
- {
172
- pushMatrix(matrixTarget);
173
- GlMatrixHelper<_Flags&Eigen::RowMajorBit,_Flags>::loadMatrix(mat);
174
- }
175
-
176
- template<typename Scalar, typename Derived>
177
- void GpuHelper::pushMatrix(
178
- const Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<Scalar>,Derived>&,
179
- GLenum matrixTarget)
180
- {
181
- pushMatrix(matrixTarget);
182
- glLoadIdentity();
183
- }
184
-
185
- inline void GpuHelper::popMatrix(GLenum matrixTarget)
186
- {
187
- setMatrixTarget(matrixTarget);
188
- glPopMatrix();
189
- }
190
-
191
- inline void GpuHelper::draw(GLenum mode, uint nofElement)
192
- {
193
- glDrawArrays(mode, 0, nofElement);
194
- }
195
-
196
-
197
- inline void GpuHelper::draw(GLenum mode, const std::vector<uint>* pIndexes)
198
- {
199
- glDrawElements(mode, pIndexes->size(), GL_UNSIGNED_INT, &(pIndexes->front()));
200
- }
201
-
202
- inline void GpuHelper::draw(GLenum mode, uint start, uint end)
203
- {
204
- glDrawArrays(mode, start, end-start);
205
- }
206
-
207
- #endif // EIGEN_GPUHELPER_H
@@ -1,30 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_ICOSPHERE_H
11
- #define EIGEN_ICOSPHERE_H
12
-
13
- #include <Eigen/Core>
14
- #include <vector>
15
-
16
- class IcoSphere
17
- {
18
- public:
19
- IcoSphere(unsigned int levels=1);
20
- const std::vector<Eigen::Vector3f>& vertices() const { return mVertices; }
21
- const std::vector<int>& indices(int level) const;
22
- void draw(int level);
23
- protected:
24
- void _subdivide();
25
- std::vector<Eigen::Vector3f> mVertices;
26
- std::vector<std::vector<int>*> mIndices;
27
- std::vector<int> mListIds;
28
- };
29
-
30
- #endif // EIGEN_ICOSPHERE_H
@@ -1,114 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_QUATERNION_DEMO_H
11
- #define EIGEN_QUATERNION_DEMO_H
12
-
13
- #include "gpuhelper.h"
14
- #include "camera.h"
15
- #include "trackball.h"
16
- #include <map>
17
- #include <QTimer>
18
- #include <QtGui/QApplication>
19
- #include <QtOpenGL/QGLWidget>
20
- #include <QtGui/QMainWindow>
21
-
22
- class RenderingWidget : public QGLWidget
23
- {
24
- Q_OBJECT
25
-
26
- typedef std::map<float,Frame> TimeLine;
27
- TimeLine m_timeline;
28
- Frame lerpFrame(float t);
29
-
30
- Frame mInitFrame;
31
- bool mAnimate;
32
- float m_alpha;
33
-
34
- enum TrackMode {
35
- TM_NO_TRACK=0, TM_ROTATE_AROUND, TM_ZOOM,
36
- TM_LOCAL_ROTATE, TM_FLY_Z, TM_FLY_PAN
37
- };
38
-
39
- enum NavMode {
40
- NavTurnAround,
41
- NavFly
42
- };
43
-
44
- enum LerpMode {
45
- LerpQuaternion,
46
- LerpEulerAngles
47
- };
48
-
49
- enum RotationMode {
50
- RotationStable,
51
- RotationStandard
52
- };
53
-
54
- Camera mCamera;
55
- TrackMode mCurrentTrackingMode;
56
- NavMode mNavMode;
57
- LerpMode mLerpMode;
58
- RotationMode mRotationMode;
59
- Vector2i mMouseCoords;
60
- Trackball mTrackball;
61
-
62
- QTimer m_timer;
63
-
64
- void setupCamera();
65
-
66
- std::vector<Vector3f> mVertices;
67
- std::vector<Vector3f> mNormals;
68
- std::vector<int> mIndices;
69
-
70
- protected slots:
71
-
72
- virtual void animate(void);
73
- virtual void drawScene(void);
74
-
75
- virtual void grabFrame(void);
76
- virtual void stopAnimation();
77
-
78
- virtual void setNavMode(int);
79
- virtual void setLerpMode(int);
80
- virtual void setRotationMode(int);
81
- virtual void resetCamera();
82
-
83
- protected:
84
-
85
- virtual void initializeGL();
86
- virtual void resizeGL(int width, int height);
87
- virtual void paintGL();
88
-
89
- //--------------------------------------------------------------------------------
90
- virtual void mousePressEvent(QMouseEvent * e);
91
- virtual void mouseReleaseEvent(QMouseEvent * e);
92
- virtual void mouseMoveEvent(QMouseEvent * e);
93
- virtual void keyPressEvent(QKeyEvent * e);
94
- //--------------------------------------------------------------------------------
95
-
96
- public:
97
- EIGEN_MAKE_ALIGNED_OPERATOR_NEW
98
-
99
- RenderingWidget();
100
- ~RenderingWidget() { }
101
-
102
- QWidget* createNavigationControlWidget();
103
- };
104
-
105
- class QuaternionDemo : public QMainWindow
106
- {
107
- Q_OBJECT
108
- public:
109
- QuaternionDemo();
110
- protected:
111
- RenderingWidget* mRenderingWidget;
112
- };
113
-
114
- #endif // EIGEN_QUATERNION_DEMO_H
@@ -1,42 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_TRACKBALL_H
11
- #define EIGEN_TRACKBALL_H
12
-
13
- #include <Eigen/Geometry>
14
-
15
- class Camera;
16
-
17
- class Trackball
18
- {
19
- public:
20
-
21
- enum Mode {Around, Local};
22
-
23
- Trackball() : mpCamera(0) {}
24
-
25
- void start(Mode m = Around) { mMode = m; mLastPointOk = false; }
26
-
27
- void setCamera(Camera* pCam) { mpCamera = pCam; }
28
-
29
- void track(const Eigen::Vector2i& newPoint2D);
30
-
31
- protected:
32
-
33
- bool mapToSphere( const Eigen::Vector2i& p2, Eigen::Vector3f& v3);
34
-
35
- Camera* mpCamera;
36
- Eigen::Vector3f mLastPoint3D;
37
- Mode mMode;
38
- bool mLastPointOk;
39
-
40
- };
41
-
42
- #endif // EIGEN_TRACKBALL_H
@@ -1,29 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2010-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_LAPACK_COMMON_H
11
- #define EIGEN_LAPACK_COMMON_H
12
-
13
- #include "../blas/common.h"
14
- #include "../Eigen/src/misc/lapack.h"
15
-
16
- #define EIGEN_LAPACK_FUNC(FUNC,ARGLIST) \
17
- extern "C" { int EIGEN_BLAS_FUNC(FUNC) ARGLIST; } \
18
- int EIGEN_BLAS_FUNC(FUNC) ARGLIST
19
-
20
- typedef Eigen::Map<Eigen::Transpositions<Eigen::Dynamic,Eigen::Dynamic,int> > PivotsType;
21
-
22
- #if ISCOMPLEX
23
- #define EIGEN_LAPACK_ARG_IF_COMPLEX(X) X,
24
- #else
25
- #define EIGEN_LAPACK_ARG_IF_COMPLEX(X)
26
- #endif
27
-
28
-
29
- #endif // EIGEN_LAPACK_COMMON_H
@@ -1,69 +0,0 @@
1
- # This file is part of Eigen, a lightweight C++ template library
2
- # for linear algebra.
3
- #
4
- # Copyright (C) 2012 Keir Mierle <mierle@gmail.com>
5
- #
6
- # This Source Code Form is subject to the terms of the Mozilla
7
- # Public License v. 2.0. If a copy of the MPL was not distributed
8
- # with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
- #
10
- # Author: mierle@gmail.com (Keir Mierle)
11
- #
12
- # Make the long-awaited conversion to MPL.
13
-
14
- lgpl3_header = '''
15
- // Eigen is free software; you can redistribute it and/or
16
- // modify it under the terms of the GNU Lesser General Public
17
- // License as published by the Free Software Foundation; either
18
- // version 3 of the License, or (at your option) any later version.
19
- //
20
- // Alternatively, you can redistribute it and/or
21
- // modify it under the terms of the GNU General Public License as
22
- // published by the Free Software Foundation; either version 2 of
23
- // the License, or (at your option) any later version.
24
- //
25
- // Eigen is distributed in the hope that it will be useful, but WITHOUT ANY
26
- // WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
27
- // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License or the
28
- // GNU General Public License for more details.
29
- //
30
- // You should have received a copy of the GNU Lesser General Public
31
- // License and a copy of the GNU General Public License along with
32
- // Eigen. If not, see <http://www.gnu.org/licenses/>.
33
- '''
34
-
35
- mpl2_header = """
36
- // This Source Code Form is subject to the terms of the Mozilla
37
- // Public License v. 2.0. If a copy of the MPL was not distributed
38
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
39
- """
40
-
41
- import os
42
- import sys
43
-
44
- exclusions = set(['relicense.py'])
45
-
46
- def update(text):
47
- if text.find(lgpl3_header) == -1:
48
- return text, False
49
- return text.replace(lgpl3_header, mpl2_header), True
50
-
51
- rootdir = sys.argv[1]
52
- for root, sub_folders, files in os.walk(rootdir):
53
- for basename in files:
54
- if basename in exclusions:
55
- print 'SKIPPED', filename
56
- continue
57
- filename = os.path.join(root, basename)
58
- fo = file(filename)
59
- text = fo.read()
60
- fo.close()
61
-
62
- text, updated = update(text)
63
- if updated:
64
- fo = file(filename, "w")
65
- fo.write(text)
66
- fo.close()
67
- print 'UPDATED', filename
68
- else:
69
- print ' ', filename
@@ -1,165 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2011-2018 Gael Guennebaud <gael.guennebaud@inria.fr>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_TEST_ANNOYING_SCALAR_H
11
- #define EIGEN_TEST_ANNOYING_SCALAR_H
12
-
13
- #include <ostream>
14
-
15
- #if EIGEN_COMP_GNUC
16
- #pragma GCC diagnostic ignored "-Wshadow"
17
- #endif
18
-
19
- #ifndef EIGEN_TEST_ANNOYING_SCALAR_DONT_THROW
20
- struct my_exception
21
- {
22
- my_exception() {}
23
- ~my_exception() {}
24
- };
25
- #endif
26
-
27
- // An AnnoyingScalar is a pseudo scalar type that:
28
- // - can randomly through an exception in operator +
29
- // - randomly allocate on the heap or initialize a reference to itself making it non trivially copyable, nor movable, nor relocatable.
30
-
31
- class AnnoyingScalar
32
- {
33
- public:
34
- AnnoyingScalar() { init(); *v = 0; }
35
- AnnoyingScalar(long double _v) { init(); *v = _v; }
36
- AnnoyingScalar(double _v) { init(); *v = _v; }
37
- AnnoyingScalar(float _v) { init(); *v = _v; }
38
- AnnoyingScalar(int _v) { init(); *v = _v; }
39
- AnnoyingScalar(long _v) { init(); *v = _v; }
40
- #if EIGEN_HAS_CXX11
41
- AnnoyingScalar(long long _v) { init(); *v = _v; }
42
- #endif
43
- AnnoyingScalar(const AnnoyingScalar& other) { init(); *v = *(other.v); }
44
- ~AnnoyingScalar() {
45
- if(v!=&data)
46
- delete v;
47
- instances--;
48
- }
49
-
50
- void init() {
51
- if(internal::random<bool>())
52
- v = new float;
53
- else
54
- v = &data;
55
- instances++;
56
- }
57
-
58
- AnnoyingScalar operator+(const AnnoyingScalar& other) const
59
- {
60
- #ifndef EIGEN_TEST_ANNOYING_SCALAR_DONT_THROW
61
- countdown--;
62
- if(countdown<=0 && !dont_throw)
63
- throw my_exception();
64
- #endif
65
- return AnnoyingScalar(*v+*other.v);
66
- }
67
-
68
- AnnoyingScalar operator-() const
69
- { return AnnoyingScalar(-*v); }
70
-
71
- AnnoyingScalar operator-(const AnnoyingScalar& other) const
72
- { return AnnoyingScalar(*v-*other.v); }
73
-
74
- AnnoyingScalar operator*(const AnnoyingScalar& other) const
75
- { return AnnoyingScalar((*v)*(*other.v)); }
76
-
77
- AnnoyingScalar operator/(const AnnoyingScalar& other) const
78
- { return AnnoyingScalar((*v)/(*other.v)); }
79
-
80
- AnnoyingScalar& operator+=(const AnnoyingScalar& other) { *v += *other.v; return *this; }
81
- AnnoyingScalar& operator-=(const AnnoyingScalar& other) { *v -= *other.v; return *this; }
82
- AnnoyingScalar& operator*=(const AnnoyingScalar& other) { *v *= *other.v; return *this; }
83
- AnnoyingScalar& operator/=(const AnnoyingScalar& other) { *v /= *other.v; return *this; }
84
- AnnoyingScalar& operator= (const AnnoyingScalar& other) { *v = *other.v; return *this; }
85
-
86
- bool operator==(const AnnoyingScalar& other) const { return *v == *other.v; }
87
- bool operator!=(const AnnoyingScalar& other) const { return *v != *other.v; }
88
- bool operator<=(const AnnoyingScalar& other) const { return *v <= *other.v; }
89
- bool operator< (const AnnoyingScalar& other) const { return *v < *other.v; }
90
- bool operator>=(const AnnoyingScalar& other) const { return *v >= *other.v; }
91
- bool operator> (const AnnoyingScalar& other) const { return *v > *other.v; }
92
-
93
- float* v;
94
- float data;
95
- static int instances;
96
- #ifndef EIGEN_TEST_ANNOYING_SCALAR_DONT_THROW
97
- static int countdown;
98
- static bool dont_throw;
99
- #endif
100
- };
101
-
102
- AnnoyingScalar real(const AnnoyingScalar &x) { return x; }
103
- AnnoyingScalar imag(const AnnoyingScalar & ) { return 0; }
104
- AnnoyingScalar conj(const AnnoyingScalar &x) { return x; }
105
- AnnoyingScalar sqrt(const AnnoyingScalar &x) { return std::sqrt(*x.v); }
106
- AnnoyingScalar abs (const AnnoyingScalar &x) { return std::abs(*x.v); }
107
- AnnoyingScalar cos (const AnnoyingScalar &x) { return std::cos(*x.v); }
108
- AnnoyingScalar sin (const AnnoyingScalar &x) { return std::sin(*x.v); }
109
- AnnoyingScalar acos(const AnnoyingScalar &x) { return std::acos(*x.v); }
110
- AnnoyingScalar atan2(const AnnoyingScalar &y,const AnnoyingScalar &x) { return std::atan2(*y.v,*x.v); }
111
-
112
- std::ostream& operator<<(std::ostream& stream,const AnnoyingScalar& x) {
113
- stream << (*(x.v));
114
- return stream;
115
- }
116
-
117
- int AnnoyingScalar::instances = 0;
118
-
119
- #ifndef EIGEN_TEST_ANNOYING_SCALAR_DONT_THROW
120
- int AnnoyingScalar::countdown = 0;
121
- bool AnnoyingScalar::dont_throw = false;
122
- #endif
123
-
124
- namespace Eigen {
125
- template<>
126
- struct NumTraits<AnnoyingScalar> : NumTraits<float>
127
- {
128
- enum {
129
- RequireInitialization = 1,
130
- };
131
- typedef AnnoyingScalar Real;
132
- typedef AnnoyingScalar Nested;
133
- typedef AnnoyingScalar Literal;
134
- typedef AnnoyingScalar NonInteger;
135
- };
136
-
137
- template<> inline AnnoyingScalar test_precision<AnnoyingScalar>() { return test_precision<float>(); }
138
-
139
- namespace numext {
140
- template<>
141
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
142
- bool (isfinite)(const AnnoyingScalar& x) {
143
- return (numext::isfinite)(*x.v);
144
- }
145
- }
146
-
147
- namespace internal {
148
- template<> EIGEN_STRONG_INLINE double cast(const AnnoyingScalar& x) { return double(*x.v); }
149
- template<> EIGEN_STRONG_INLINE float cast(const AnnoyingScalar& x) { return *x.v; }
150
- }
151
- } // namespace Eigen
152
-
153
- AnnoyingScalar get_test_precision(const AnnoyingScalar&)
154
- { return Eigen::test_precision<AnnoyingScalar>(); }
155
-
156
- AnnoyingScalar test_relative_error(const AnnoyingScalar &a, const AnnoyingScalar &b)
157
- { return test_relative_error(*a.v, *b.v); }
158
-
159
- inline bool test_isApprox(const AnnoyingScalar &a, const AnnoyingScalar &b)
160
- { return internal::isApprox(*a.v, *b.v, test_precision<float>()); }
161
-
162
- inline bool test_isMuchSmallerThan(const AnnoyingScalar &a, const AnnoyingScalar &b)
163
- { return test_isMuchSmallerThan(*a.v, *b.v); }
164
-
165
- #endif // EIGEN_TEST_ANNOYING_SCALAR_H
@@ -1,35 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2020 Sebastien Boisvert <seb@boisvert.info>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_MISC_MOVABLE_SCALAR_H
11
- #define EIGEN_MISC_MOVABLE_SCALAR_H
12
-
13
- #include <vector>
14
-
15
- namespace Eigen
16
- {
17
- template <typename Scalar, typename Base = std::vector<Scalar>>
18
- struct MovableScalar : public Base
19
- {
20
- MovableScalar() = default;
21
- ~MovableScalar() = default;
22
- MovableScalar(const MovableScalar&) = default;
23
- MovableScalar(MovableScalar&& other) = default;
24
- MovableScalar& operator=(const MovableScalar&) = default;
25
- MovableScalar& operator=(MovableScalar&& other) = default;
26
- MovableScalar(Scalar scalar) : Base(100, scalar) {}
27
-
28
- operator Scalar() const { return this->size() > 0 ? this->back() : Scalar(); }
29
- };
30
-
31
- template<> struct NumTraits<MovableScalar<float>> : GenericNumTraits<float> {};
32
- }
33
-
34
- #endif
35
-