sequenzo 0.1.17__cp311-cp311-win_amd64.whl → 0.1.19__cp311-cp311-win_amd64.whl

sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h

@@ -1,521 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef SVD_DEFAULT
-#error a macro SVD_DEFAULT(MatrixType) must be defined prior to including svd_common.h
-#endif
-
-#ifndef SVD_FOR_MIN_NORM
-#error a macro SVD_FOR_MIN_NORM(MatrixType) must be defined prior to including svd_common.h
-#endif
-
-#include "svd_fill.h"
-#include "solverbase.h"
-
-// Check that the matrix m is properly reconstructed and that the U and V factors are unitary
-// The SVD must have already been computed.
-template<typename SvdType, typename MatrixType>
-void svd_check_full(const MatrixType& m, const SvdType& svd)
-{
-  Index rows = m.rows();
-  Index cols = m.cols();
-
-  enum {
-    RowsAtCompileTime = MatrixType::RowsAtCompileTime,
-    ColsAtCompileTime = MatrixType::ColsAtCompileTime
-  };
-
-  typedef typename MatrixType::Scalar Scalar;
-  typedef typename MatrixType::RealScalar RealScalar;
-  typedef Matrix<Scalar, RowsAtCompileTime, RowsAtCompileTime> MatrixUType;
-  typedef Matrix<Scalar, ColsAtCompileTime, ColsAtCompileTime> MatrixVType;
-
-  MatrixType sigma = MatrixType::Zero(rows,cols);
-  sigma.diagonal() = svd.singularValues().template cast<Scalar>();
-  MatrixUType u = svd.matrixU();
-  MatrixVType v = svd.matrixV();
-  RealScalar scaling = m.cwiseAbs().maxCoeff();
-  if(scaling<(std::numeric_limits<RealScalar>::min)())
-  {
-    VERIFY(sigma.cwiseAbs().maxCoeff() <= (std::numeric_limits<RealScalar>::min)());
-  }
-  else
-  {
-    VERIFY_IS_APPROX(m/scaling, u * (sigma/scaling) * v.adjoint());
-  }
-  VERIFY_IS_UNITARY(u);
-  VERIFY_IS_UNITARY(v);
-}
-
-// Compare partial SVD defined by computationOptions to a full SVD referenceSvd
-template<typename SvdType, typename MatrixType>
-void svd_compare_to_full(const MatrixType& m,
-                         unsigned int computationOptions,
-                         const SvdType& referenceSvd)
-{
-  typedef typename MatrixType::RealScalar RealScalar;
-  Index rows = m.rows();
-  Index cols = m.cols();
-  Index diagSize = (std::min)(rows, cols);
-  RealScalar prec = test_precision<RealScalar>();
-
-  SvdType svd(m, computationOptions);
-
-  VERIFY_IS_APPROX(svd.singularValues(), referenceSvd.singularValues());
-  
-  if(computationOptions & (ComputeFullV|ComputeThinV))
-  {
-    VERIFY( (svd.matrixV().adjoint()*svd.matrixV()).isIdentity(prec) );
-    VERIFY_IS_APPROX( svd.matrixV().leftCols(diagSize) * svd.singularValues().asDiagonal() * svd.matrixV().leftCols(diagSize).adjoint(),
-                      referenceSvd.matrixV().leftCols(diagSize) * referenceSvd.singularValues().asDiagonal() * referenceSvd.matrixV().leftCols(diagSize).adjoint());
-  }
-  
-  if(computationOptions & (ComputeFullU|ComputeThinU))
-  {
-    VERIFY( (svd.matrixU().adjoint()*svd.matrixU()).isIdentity(prec) );
-    VERIFY_IS_APPROX( svd.matrixU().leftCols(diagSize) * svd.singularValues().cwiseAbs2().asDiagonal() * svd.matrixU().leftCols(diagSize).adjoint(),
-                      referenceSvd.matrixU().leftCols(diagSize) * referenceSvd.singularValues().cwiseAbs2().asDiagonal() * referenceSvd.matrixU().leftCols(diagSize).adjoint());
-  }
-  
-  // The following checks are not critical.
-  // For instance, with Dived&Conquer SVD, if only the factor 'V' is computedt then different matrix-matrix product implementation will be used
-  // and the resulting 'V' factor might be significantly different when the SVD decomposition is not unique, especially with single precision float.
-  ++g_test_level;
-  if(computationOptions & ComputeFullU)  VERIFY_IS_APPROX(svd.matrixU(), referenceSvd.matrixU());
-  if(computationOptions & ComputeThinU)  VERIFY_IS_APPROX(svd.matrixU(), referenceSvd.matrixU().leftCols(diagSize));
-  if(computationOptions & ComputeFullV)  VERIFY_IS_APPROX(svd.matrixV().cwiseAbs(), referenceSvd.matrixV().cwiseAbs());
-  if(computationOptions & ComputeThinV)  VERIFY_IS_APPROX(svd.matrixV(), referenceSvd.matrixV().leftCols(diagSize));
-  --g_test_level;
-}
-
-//
-template<typename SvdType, typename MatrixType>
-void svd_least_square(const MatrixType& m, unsigned int computationOptions)
-{
-  typedef typename MatrixType::Scalar Scalar;
-  typedef typename MatrixType::RealScalar RealScalar;
-  Index rows = m.rows();
-  Index cols = m.cols();
-
-  enum {
-    RowsAtCompileTime = MatrixType::RowsAtCompileTime,
-    ColsAtCompileTime = MatrixType::ColsAtCompileTime
-  };
-
-  typedef Matrix<Scalar, RowsAtCompileTime, Dynamic> RhsType;
-  typedef Matrix<Scalar, ColsAtCompileTime, Dynamic> SolutionType;
-
-  RhsType rhs = RhsType::Random(rows, internal::random<Index>(1, cols));
-  SvdType svd(m, computationOptions);
-
-       if(internal::is_same<RealScalar,double>::value) svd.setThreshold(1e-8);
-  else if(internal::is_same<RealScalar,float>::value)  svd.setThreshold(2e-4);
-
-  SolutionType x = svd.solve(rhs);
-   
-  RealScalar residual = (m*x-rhs).norm();
-  RealScalar rhs_norm = rhs.norm();
-  if(!test_isMuchSmallerThan(residual,rhs.norm()))
-  {
-    // ^^^ If the residual is very small, then we have an exact solution, so we are already good.
-    
-    // evaluate normal equation which works also for least-squares solutions
-    if(internal::is_same<RealScalar,double>::value || svd.rank()==m.diagonal().size())
-    {
-      using std::sqrt;
-      // This test is not stable with single precision.
-      // This is probably because squaring m signicantly affects the precision.      
-      if(internal::is_same<RealScalar,float>::value) ++g_test_level;
-      
-      VERIFY_IS_APPROX(m.adjoint()*(m*x),m.adjoint()*rhs);
-      
-      if(internal::is_same<RealScalar,float>::value) --g_test_level;
-    }
-    
-    // Check that there is no significantly better solution in the neighborhood of x
-    for(Index k=0;k<x.rows();++k)
-    {
-      using std::abs;
-      
-      SolutionType y(x);
-      y.row(k) = (RealScalar(1)+2*NumTraits<RealScalar>::epsilon())*x.row(k);
-      RealScalar residual_y = (m*y-rhs).norm();
-      VERIFY( test_isMuchSmallerThan(abs(residual_y-residual), rhs_norm) || residual < residual_y );
-      if(internal::is_same<RealScalar,float>::value) ++g_test_level;
-      VERIFY( test_isApprox(residual_y,residual) || residual < residual_y );
-      if(internal::is_same<RealScalar,float>::value) --g_test_level;
-      
-      y.row(k) = (RealScalar(1)-2*NumTraits<RealScalar>::epsilon())*x.row(k);
-      residual_y = (m*y-rhs).norm();
-      VERIFY( test_isMuchSmallerThan(abs(residual_y-residual), rhs_norm) || residual < residual_y );
-      if(internal::is_same<RealScalar,float>::value) ++g_test_level;
-      VERIFY( test_isApprox(residual_y,residual) || residual < residual_y );
-      if(internal::is_same<RealScalar,float>::value) --g_test_level;
-    }
-  }
-}
-
-// check minimal norm solutions, the inoput matrix m is only used to recover problem size
-template<typename MatrixType>
-void svd_min_norm(const MatrixType& m, unsigned int computationOptions)
-{
-  typedef typename MatrixType::Scalar Scalar;
-  Index cols = m.cols();
-
-  enum {
-    ColsAtCompileTime = MatrixType::ColsAtCompileTime
-  };
-
-  typedef Matrix<Scalar, ColsAtCompileTime, Dynamic> SolutionType;
-
-  // generate a full-rank m x n problem with m<n
-  enum {
-    RankAtCompileTime2 = ColsAtCompileTime==Dynamic ? Dynamic : (ColsAtCompileTime)/2+1,
-    RowsAtCompileTime3 = ColsAtCompileTime==Dynamic ? Dynamic : ColsAtCompileTime+1
-  };
-  typedef Matrix<Scalar, RankAtCompileTime2, ColsAtCompileTime> MatrixType2;
-  typedef Matrix<Scalar, RankAtCompileTime2, 1> RhsType2;
-  typedef Matrix<Scalar, ColsAtCompileTime, RankAtCompileTime2> MatrixType2T;
-  Index rank = RankAtCompileTime2==Dynamic ? internal::random<Index>(1,cols) : Index(RankAtCompileTime2);
-  MatrixType2 m2(rank,cols);
-  int guard = 0;
-  do {
-    m2.setRandom();
-  } while(SVD_FOR_MIN_NORM(MatrixType2)(m2).setThreshold(test_precision<Scalar>()).rank()!=rank && (++guard)<10);
-  VERIFY(guard<10);
-
-  RhsType2 rhs2 = RhsType2::Random(rank);
-  // use QR to find a reference minimal norm solution
-  HouseholderQR<MatrixType2T> qr(m2.adjoint());
-  Matrix<Scalar,Dynamic,1> tmp = qr.matrixQR().topLeftCorner(rank,rank).template triangularView<Upper>().adjoint().solve(rhs2);
-  tmp.conservativeResize(cols);
-  tmp.tail(cols-rank).setZero();
-  SolutionType x21 = qr.householderQ() * tmp;
-  // now check with SVD
-  SVD_FOR_MIN_NORM(MatrixType2) svd2(m2, computationOptions);
-  SolutionType x22 = svd2.solve(rhs2);
-  VERIFY_IS_APPROX(m2*x21, rhs2);
-  VERIFY_IS_APPROX(m2*x22, rhs2);
-  VERIFY_IS_APPROX(x21, x22);
-
-  // Now check with a rank deficient matrix
-  typedef Matrix<Scalar, RowsAtCompileTime3, ColsAtCompileTime> MatrixType3;
-  typedef Matrix<Scalar, RowsAtCompileTime3, 1> RhsType3;
-  Index rows3 = RowsAtCompileTime3==Dynamic ? internal::random<Index>(rank+1,2*cols) : Index(RowsAtCompileTime3);
-  Matrix<Scalar,RowsAtCompileTime3,Dynamic> C = Matrix<Scalar,RowsAtCompileTime3,Dynamic>::Random(rows3,rank);
-  MatrixType3 m3 = C * m2;
-  RhsType3 rhs3 = C * rhs2;
-  SVD_FOR_MIN_NORM(MatrixType3) svd3(m3, computationOptions);
-  SolutionType x3 = svd3.solve(rhs3);
-  VERIFY_IS_APPROX(m3*x3, rhs3);
-  VERIFY_IS_APPROX(m3*x21, rhs3);
-  VERIFY_IS_APPROX(m2*x3, rhs2);
-  VERIFY_IS_APPROX(x21, x3);
-}
-
-template<typename MatrixType, typename SolverType>
-void svd_test_solvers(const MatrixType& m, const SolverType& solver) {
-    Index rows, cols, cols2;
-
-    rows = m.rows();
-    cols = m.cols();
-
-    if(MatrixType::ColsAtCompileTime==Dynamic)
-    {
-      cols2 = internal::random<int>(2,EIGEN_TEST_MAX_SIZE);
-    }
-    else
-    {
-      cols2 = cols;
-    }
-    typedef Matrix<typename MatrixType::Scalar, MatrixType::ColsAtCompileTime, MatrixType::ColsAtCompileTime> CMatrixType;
-    check_solverbase<CMatrixType, MatrixType>(m, solver, rows, cols, cols2);
-}
-
-// Check full, compare_to_full, least_square, and min_norm for all possible compute-options
-template<typename SvdType, typename MatrixType>
-void svd_test_all_computation_options(const MatrixType& m, bool full_only)
-{
-//   if (QRPreconditioner == NoQRPreconditioner && m.rows() != m.cols())
-//     return;
-  STATIC_CHECK(( internal::is_same<typename SvdType::StorageIndex,int>::value ));
-
-  SvdType fullSvd(m, ComputeFullU|ComputeFullV);
-  CALL_SUBTEST(( svd_check_full(m, fullSvd) ));
-  CALL_SUBTEST(( svd_least_square<SvdType>(m, ComputeFullU | ComputeFullV) ));
-  CALL_SUBTEST(( svd_min_norm(m, ComputeFullU | ComputeFullV) ));
-  
-  #if defined __INTEL_COMPILER
-  // remark #111: statement is unreachable
-  #pragma warning disable 111
-  #endif
-
-  svd_test_solvers(m, fullSvd);
-
-  if(full_only)
-    return;
-
-  CALL_SUBTEST(( svd_compare_to_full(m, ComputeFullU, fullSvd) ));
-  CALL_SUBTEST(( svd_compare_to_full(m, ComputeFullV, fullSvd) ));
-  CALL_SUBTEST(( svd_compare_to_full(m, 0, fullSvd) ));
-
-  if (MatrixType::ColsAtCompileTime == Dynamic) {
-    // thin U/V are only available with dynamic number of columns
-    CALL_SUBTEST(( svd_compare_to_full(m, ComputeFullU|ComputeThinV, fullSvd) ));
-    CALL_SUBTEST(( svd_compare_to_full(m,              ComputeThinV, fullSvd) ));
-    CALL_SUBTEST(( svd_compare_to_full(m, ComputeThinU|ComputeFullV, fullSvd) ));
-    CALL_SUBTEST(( svd_compare_to_full(m, ComputeThinU             , fullSvd) ));
-    CALL_SUBTEST(( svd_compare_to_full(m, ComputeThinU|ComputeThinV, fullSvd) ));
-    
-    CALL_SUBTEST(( svd_least_square<SvdType>(m, ComputeFullU | ComputeThinV) ));
-    CALL_SUBTEST(( svd_least_square<SvdType>(m, ComputeThinU | ComputeFullV) ));
-    CALL_SUBTEST(( svd_least_square<SvdType>(m, ComputeThinU | ComputeThinV) ));
-
-    CALL_SUBTEST(( svd_min_norm(m, ComputeFullU | ComputeThinV) ));
-    CALL_SUBTEST(( svd_min_norm(m, ComputeThinU | ComputeFullV) ));
-    CALL_SUBTEST(( svd_min_norm(m, ComputeThinU | ComputeThinV) ));
-
-    // test reconstruction
-    Index diagSize = (std::min)(m.rows(), m.cols());
-    SvdType svd(m, ComputeThinU | ComputeThinV);
-    VERIFY_IS_APPROX(m, svd.matrixU().leftCols(diagSize) * svd.singularValues().asDiagonal() * svd.matrixV().leftCols(diagSize).adjoint());
-  }
-}
-
-
-// work around stupid msvc error when constructing at compile time an expression that involves
-// a division by zero, even if the numeric type has floating point
-template<typename Scalar>
-EIGEN_DONT_INLINE Scalar zero() { return Scalar(0); }
-
-// workaround aggressive optimization in ICC
-template<typename T> EIGEN_DONT_INLINE  T sub(T a, T b) { return a - b; }
-
-// This function verifies we don't iterate infinitely on nan/inf values,
-// and that info() returns InvalidInput.
-template<typename SvdType, typename MatrixType>
-void svd_inf_nan()
-{
-  SvdType svd;
-  typedef typename MatrixType::Scalar Scalar;
-  Scalar some_inf = Scalar(1) / zero<Scalar>();
-  VERIFY(sub(some_inf, some_inf) != sub(some_inf, some_inf));
-  svd.compute(MatrixType::Constant(10,10,some_inf), ComputeFullU | ComputeFullV);
-  VERIFY(svd.info() == InvalidInput);
-
-  Scalar nan = std::numeric_limits<Scalar>::quiet_NaN();
-  VERIFY(nan != nan);
-  svd.compute(MatrixType::Constant(10,10,nan), ComputeFullU | ComputeFullV);
-  VERIFY(svd.info() == InvalidInput);  
-
-  MatrixType m = MatrixType::Zero(10,10);
-  m(internal::random<int>(0,9), internal::random<int>(0,9)) = some_inf;
-  svd.compute(m, ComputeFullU | ComputeFullV);
-  VERIFY(svd.info() == InvalidInput);
-
-  m = MatrixType::Zero(10,10);
-  m(internal::random<int>(0,9), internal::random<int>(0,9)) = nan;
-  svd.compute(m, ComputeFullU | ComputeFullV);
-  VERIFY(svd.info() == InvalidInput);
-  
-  // regression test for bug 791
-  m.resize(3,3);
-  m << 0,    2*NumTraits<Scalar>::epsilon(),  0.5,
-       0,   -0.5,                             0,
-       nan,  0,                               0;
-  svd.compute(m, ComputeFullU | ComputeFullV);
-  VERIFY(svd.info() == InvalidInput);
-  
-  m.resize(4,4);
-  m <<  1, 0, 0, 0,
-        0, 3, 1, 2e-308,
-        1, 0, 1, nan,
-        0, nan, nan, 0;
-  svd.compute(m, ComputeFullU | ComputeFullV);
-  VERIFY(svd.info() == InvalidInput);
-}
-
-// Regression test for bug 286: JacobiSVD loops indefinitely with some
-// matrices containing denormal numbers.
-template<typename>
-void svd_underoverflow()
-{
-#if defined __INTEL_COMPILER
-// shut up warning #239: floating point underflow
-#pragma warning push
-#pragma warning disable 239
-#endif
-  Matrix2d M;
-  M << -7.90884e-313, -4.94e-324,
-                 0, 5.60844e-313;
-  SVD_DEFAULT(Matrix2d) svd;
-  svd.compute(M,ComputeFullU|ComputeFullV);
-  CALL_SUBTEST( svd_check_full(M,svd) );
-  
-  // Check all 2x2 matrices made with the following coefficients:
-  VectorXd value_set(9);
-  value_set << 0, 1, -1, 5.60844e-313, -5.60844e-313, 4.94e-324, -4.94e-324, -4.94e-223, 4.94e-223;
-  Array4i id(0,0,0,0);
-  int k = 0;
-  do
-  {
-    M << value_set(id(0)), value_set(id(1)), value_set(id(2)), value_set(id(3));
-    svd.compute(M,ComputeFullU|ComputeFullV);
-    CALL_SUBTEST( svd_check_full(M,svd) );
-
-    id(k)++;
-    if(id(k)>=value_set.size())
-    {
-      while(k<3 && id(k)>=value_set.size()) id(++k)++;
-      id.head(k).setZero();
-      k=0;
-    }
-
-  } while((id<int(value_set.size())).all());
-  
-#if defined __INTEL_COMPILER
-#pragma warning pop
-#endif
-  
-  // Check for overflow:
-  Matrix3d M3;
-  M3 << 4.4331978442502944e+307, -5.8585363752028680e+307,  6.4527017443412964e+307,
-        3.7841695601406358e+307,  2.4331702789740617e+306, -3.5235707140272905e+307,
-       -8.7190887618028355e+307, -7.3453213709232193e+307, -2.4367363684472105e+307;
-
-  SVD_DEFAULT(Matrix3d) svd3;
-  svd3.compute(M3,ComputeFullU|ComputeFullV); // just check we don't loop indefinitely
-  CALL_SUBTEST( svd_check_full(M3,svd3) );
-}
-
-// void jacobisvd(const MatrixType& a = MatrixType(), bool pickrandom = true)
-
-template<typename MatrixType>
-void svd_all_trivial_2x2( void (*cb)(const MatrixType&,bool) )
-{
-  MatrixType M;
-  VectorXd value_set(3);
-  value_set << 0, 1, -1;
-  Array4i id(0,0,0,0);
-  int k = 0;
-  do
-  {
-    M << value_set(id(0)), value_set(id(1)), value_set(id(2)), value_set(id(3));
-    
-    cb(M,false);
-    
-    id(k)++;
-    if(id(k)>=value_set.size())
-    {
-      while(k<3 && id(k)>=value_set.size()) id(++k)++;
-      id.head(k).setZero();
-      k=0;
-    }
-    
-  } while((id<int(value_set.size())).all());
-}
-
-template<typename>
-void svd_preallocate()
-{
-  Vector3f v(3.f, 2.f, 1.f);
-  MatrixXf m = v.asDiagonal();
-
-  internal::set_is_malloc_allowed(false);
-  VERIFY_RAISES_ASSERT(VectorXf tmp(10);)
-  SVD_DEFAULT(MatrixXf) svd;
-  internal::set_is_malloc_allowed(true);
-  svd.compute(m);
-  VERIFY_IS_APPROX(svd.singularValues(), v);
-
-  SVD_DEFAULT(MatrixXf) svd2(3,3);
-  internal::set_is_malloc_allowed(false);
-  svd2.compute(m);
-  internal::set_is_malloc_allowed(true);
-  VERIFY_IS_APPROX(svd2.singularValues(), v);
-  VERIFY_RAISES_ASSERT(svd2.matrixU());
-  VERIFY_RAISES_ASSERT(svd2.matrixV());
-  svd2.compute(m, ComputeFullU | ComputeFullV);
-  VERIFY_IS_APPROX(svd2.matrixU(), Matrix3f::Identity());
-  VERIFY_IS_APPROX(svd2.matrixV(), Matrix3f::Identity());
-  internal::set_is_malloc_allowed(false);
-  svd2.compute(m);
-  internal::set_is_malloc_allowed(true);
-
-  SVD_DEFAULT(MatrixXf) svd3(3,3,ComputeFullU|ComputeFullV);
-  internal::set_is_malloc_allowed(false);
-  svd2.compute(m);
-  internal::set_is_malloc_allowed(true);
-  VERIFY_IS_APPROX(svd2.singularValues(), v);
-  VERIFY_IS_APPROX(svd2.matrixU(), Matrix3f::Identity());
-  VERIFY_IS_APPROX(svd2.matrixV(), Matrix3f::Identity());
-  internal::set_is_malloc_allowed(false);
-  svd2.compute(m, ComputeFullU|ComputeFullV);
-  internal::set_is_malloc_allowed(true);
-}
-
-template<typename SvdType,typename MatrixType> 
-void svd_verify_assert(const MatrixType& m, bool fullOnly = false)
-{
-  typedef typename MatrixType::Scalar Scalar;
-  Index rows = m.rows();
-  Index cols = m.cols();
-
-  enum {
-    RowsAtCompileTime = MatrixType::RowsAtCompileTime,
-    ColsAtCompileTime = MatrixType::ColsAtCompileTime
-  };
-
-  typedef Matrix<Scalar, RowsAtCompileTime, 1> RhsType;
-  RhsType rhs(rows);
-  SvdType svd;
-  VERIFY_RAISES_ASSERT(svd.matrixU())
-  VERIFY_RAISES_ASSERT(svd.singularValues())
-  VERIFY_RAISES_ASSERT(svd.matrixV())
-  VERIFY_RAISES_ASSERT(svd.solve(rhs))
-  VERIFY_RAISES_ASSERT(svd.transpose().solve(rhs))
-  VERIFY_RAISES_ASSERT(svd.adjoint().solve(rhs))
-  MatrixType a = MatrixType::Zero(rows, cols);
-  a.setZero();
-  svd.compute(a, 0);
-  VERIFY_RAISES_ASSERT(svd.matrixU())
-  VERIFY_RAISES_ASSERT(svd.matrixV())
-  svd.singularValues();
-  VERIFY_RAISES_ASSERT(svd.solve(rhs))
-
-  svd.compute(a, ComputeFullU);
-  svd.matrixU();
-  VERIFY_RAISES_ASSERT(svd.matrixV())
-  VERIFY_RAISES_ASSERT(svd.solve(rhs))
-  svd.compute(a, ComputeFullV);
-  svd.matrixV();
-  VERIFY_RAISES_ASSERT(svd.matrixU())
-  VERIFY_RAISES_ASSERT(svd.solve(rhs))
-
-  if (!fullOnly && ColsAtCompileTime == Dynamic)
-  {
-    svd.compute(a, ComputeThinU);
-    svd.matrixU();
-    VERIFY_RAISES_ASSERT(svd.matrixV())
-    VERIFY_RAISES_ASSERT(svd.solve(rhs))
-    svd.compute(a, ComputeThinV);
-    svd.matrixV();
-    VERIFY_RAISES_ASSERT(svd.matrixU())
-    VERIFY_RAISES_ASSERT(svd.solve(rhs))
-  }
-  else
-  {
-    VERIFY_RAISES_ASSERT(svd.compute(a, ComputeThinU))
-    VERIFY_RAISES_ASSERT(svd.compute(a, ComputeThinV))
-  }
-}
-
-#undef SVD_DEFAULT
-#undef SVD_FOR_MIN_NORM

sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h

@@ -1,118 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2014-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-template<typename T>
-Array<T,4,1> four_denorms();
-
-template<>
-Array4f four_denorms() { return Array4f(5.60844e-39f, -5.60844e-39f, 4.94e-44f, -4.94e-44f); }
-template<>
-Array4d four_denorms() { return Array4d(5.60844e-313, -5.60844e-313, 4.94e-324, -4.94e-324); }
-template<typename T>
-Array<T,4,1> four_denorms() { return four_denorms<double>().cast<T>(); }
-
-template<typename MatrixType>
-void svd_fill_random(MatrixType &m, int Option = 0)
-{
-  using std::pow;
-  typedef typename MatrixType::Scalar Scalar;
-  typedef typename MatrixType::RealScalar RealScalar;
-  Index diagSize = (std::min)(m.rows(), m.cols());
-  RealScalar s = std::numeric_limits<RealScalar>::max_exponent10/4;
-  s = internal::random<RealScalar>(1,s);
-  Matrix<RealScalar,Dynamic,1> d =  Matrix<RealScalar,Dynamic,1>::Random(diagSize);
-  for(Index k=0; k<diagSize; ++k)
-    d(k) = d(k)*pow(RealScalar(10),internal::random<RealScalar>(-s,s));
-
-  bool dup     = internal::random<int>(0,10) < 3;
-  bool unit_uv = internal::random<int>(0,10) < (dup?7:3); // if we duplicate some diagonal entries, then increase the chance to preserve them using unitary U and V factors
-  
-  // duplicate some singular values
-  if(dup)
-  {
-    Index n = internal::random<Index>(0,d.size()-1);
-    for(Index i=0; i<n; ++i)
-      d(internal::random<Index>(0,d.size()-1)) = d(internal::random<Index>(0,d.size()-1));
-  }
-  
-  Matrix<Scalar,Dynamic,Dynamic> U(m.rows(),diagSize);
-  Matrix<Scalar,Dynamic,Dynamic> VT(diagSize,m.cols());
-  if(unit_uv)
-  {
-    // in very rare cases let's try with a pure diagonal matrix
-    if(internal::random<int>(0,10) < 1)
-    {
-      U.setIdentity();
-      VT.setIdentity();
-    }
-    else
-    {
-      createRandomPIMatrixOfRank(diagSize,U.rows(), U.cols(), U);
-      createRandomPIMatrixOfRank(diagSize,VT.rows(), VT.cols(), VT);
-    }
-  }
-  else
-  {
-    U.setRandom();
-    VT.setRandom();
-  }
-  
-  Matrix<Scalar,Dynamic,1> samples(9);
-  samples << 0, four_denorms<RealScalar>(),
-            -RealScalar(1)/NumTraits<RealScalar>::highest(), RealScalar(1)/NumTraits<RealScalar>::highest(), (std::numeric_limits<RealScalar>::min)(), pow((std::numeric_limits<RealScalar>::min)(),0.8);
-  
-  if(Option==Symmetric)
-  {
-    m = U * d.asDiagonal() * U.transpose();
-    
-    // randomly nullify some rows/columns
-    {
-      Index count = internal::random<Index>(-diagSize,diagSize);
-      for(Index k=0; k<count; ++k)
-      {
-        Index i = internal::random<Index>(0,diagSize-1);
-        m.row(i).setZero();
-        m.col(i).setZero();
-      }
-      if(count<0)
-      // (partly) cancel some coeffs
-      if(!(dup && unit_uv))
-      {
-        
-        Index n = internal::random<Index>(0,m.size()-1);
-        for(Index k=0; k<n; ++k)
-        {
-          Index i = internal::random<Index>(0,m.rows()-1);
-          Index j = internal::random<Index>(0,m.cols()-1);
-          m(j,i) = m(i,j) = samples(internal::random<Index>(0,samples.size()-1));
-          if(NumTraits<Scalar>::IsComplex)
-            *(&numext::real_ref(m(j,i))+1) = *(&numext::real_ref(m(i,j))+1) = samples.real()(internal::random<Index>(0,samples.size()-1));
-        }
-      }
-    }
-  }
-  else
-  {
-    m = U * d.asDiagonal() * VT;
-    // (partly) cancel some coeffs
-    if(!(dup && unit_uv))
-    {
-      Index n = internal::random<Index>(0,m.size()-1);
-      for(Index k=0; k<n; ++k)
-      {
-        Index i = internal::random<Index>(0,m.rows()-1);
-        Index j = internal::random<Index>(0,m.cols()-1);
-        m(i,j) = samples(internal::random<Index>(0,samples.size()-1));
-        if(NumTraits<Scalar>::IsComplex)
-          *(&numext::real_ref(m(i,j))+1) = samples.real()(internal::random<Index>(0,samples.size()-1));
-      }
-    }
-  }
-}
-