sequenzo 0.1.17__cp311-cp311-win_amd64.whl → 0.1.19__cp311-cp311-win_amd64.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cp311-win_amd64.pyd +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/clustering_c_code.cp311-win_amd64.pyd +0 -0
  7. sequenzo/clustering/hierarchical_clustering.py +304 -8
  8. sequenzo/define_sequence_data.py +44 -3
  9. sequenzo/dissimilarity_measures/c_code.cp311-win_amd64.pyd +0 -0
  10. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  11. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  12. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  14. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  15. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  16. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  60. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  61. sequenzo/dissimilarity_measures/src/xsimd/test/test_basic_math.cpp +6 -0
  62. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch.cpp +54 -2
  63. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_bool.cpp +8 -0
  64. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_cast.cpp +11 -4
  65. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_complex.cpp +18 -0
  66. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_int.cpp +8 -14
  67. sequenzo/dissimilarity_measures/src/xsimd/test/test_batch_manip.cpp +216 -173
  68. sequenzo/dissimilarity_measures/src/xsimd/test/test_load_store.cpp +6 -0
  69. sequenzo/dissimilarity_measures/src/xsimd/test/test_memory.cpp +1 -1
  70. sequenzo/dissimilarity_measures/src/xsimd/test/test_power.cpp +7 -4
  71. sequenzo/dissimilarity_measures/src/xsimd/test/test_select.cpp +6 -2
  72. sequenzo/dissimilarity_measures/src/xsimd/test/test_shuffle.cpp +32 -18
  73. sequenzo/dissimilarity_measures/src/xsimd/test/test_utils.hpp +21 -24
  74. sequenzo/dissimilarity_measures/src/xsimd/test/test_xsimd_api.cpp +69 -9
  75. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  76. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp311-win_amd64.pyd +0 -0
  77. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  78. sequenzo/dissimilarity_measures/utils/seqconc.cp311-win_amd64.pyd +0 -0
  79. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  80. sequenzo/dissimilarity_measures/utils/seqdss.cp311-win_amd64.pyd +0 -0
  81. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  82. sequenzo/dissimilarity_measures/utils/seqdur.cp311-win_amd64.pyd +0 -0
  83. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  84. sequenzo/dissimilarity_measures/utils/seqlength.cp311-win_amd64.pyd +0 -0
  85. sequenzo/multidomain/cat.py +0 -53
  86. sequenzo/multidomain/idcd.py +0 -1
  87. sequenzo/openmp_setup.py +233 -0
  88. sequenzo/sequence_characteristics/__init__.py +4 -0
  89. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  90. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  91. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  92. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  93. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  94. sequenzo/sequence_characteristics/turbulence.py +47 -67
  95. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  96. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  97. sequenzo/visualization/plot_sequence_index.py +58 -35
  98. sequenzo/visualization/plot_state_distribution.py +57 -36
  99. sequenzo/visualization/plot_transition_matrix.py +21 -22
  100. sequenzo/with_event_history_analysis/__init__.py +35 -0
  101. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  102. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  103. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  104. sequenzo-0.1.19.dist-info/RECORD +272 -0
  105. sequenzo/dissimilarity_measures/setup.py +0 -35
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
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  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  420. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  421. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  422. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  423. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  424. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  425. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  426. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  427. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  428. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  429. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  430. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  431. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  432. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  433. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  434. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  435. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  436. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  437. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  438. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  439. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  440. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  441. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  442. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  443. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  444. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  445. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  446. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  447. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  448. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  449. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  450. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  451. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  452. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  453. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  454. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  455. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  456. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  457. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  458. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  459. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  460. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  461. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  462. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  463. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  464. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  465. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  466. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  467. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  468. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  469. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  470. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  471. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  472. sequenzo-0.1.17.dist-info/RECORD +0 -631
  473. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  474. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  475. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -3,6 +3,7 @@
3
3
  * Martin Renou *
4
4
  * Copyright (c) QuantStack *
5
5
  * Copyright (c) Serge Guelton *
6
+ * Copyright (c) Marco Barbone *
6
7
  * *
7
8
  * Distributed under the terms of the BSD 3-Clause License. *
8
9
  * *
@@ -14,101 +15,182 @@
14
15
 
15
16
  #include "test_utils.hpp"
16
17
 
18
+ // Compile time tests for include/xsimd/arch/common/xsimd_common_swizzle.hpp
17
19
  namespace xsimd
18
20
  {
19
- template <typename T, std::size_t N>
20
- struct init_swizzle_base
21
+ namespace kernel
21
22
  {
22
- using swizzle_vector_type = std::array<T, N>;
23
- swizzle_vector_type lhs_in, exped_reverse, exped_fill, exped_dup, exped_ror, exped_rol;
24
-
25
- template <int... Indices>
26
- std::vector<swizzle_vector_type> create_swizzle_vectors()
23
+ namespace detail
27
24
  {
28
- std::vector<swizzle_vector_type> vects;
29
-
30
- /* Generate input data */
31
- for (std::size_t i = 0; i < N; ++i)
32
- {
33
- lhs_in[i] = static_cast<T>(2 * i + 1);
34
- }
35
- vects.push_back(std::move(lhs_in));
36
-
37
- /* Expected reversed data */
38
- for (std::size_t i = 0; i < N; ++i)
39
- {
40
- exped_reverse[i] = lhs_in[N - 1 - i];
41
- exped_fill[i] = lhs_in[N - 1];
42
- exped_dup[i] = lhs_in[2 * (i / 2)];
43
- exped_ror[i] = lhs_in[(i - 1) % N];
44
- exped_rol[i] = lhs_in[(i + 1) % N];
45
- }
46
- vects.push_back(std::move(exped_reverse));
47
- vects.push_back(std::move(exped_fill));
48
- vects.push_back(std::move(exped_dup));
49
- vects.push_back(std::move(exped_ror));
50
- vects.push_back(std::move(exped_rol));
51
-
52
- return vects;
25
+ // ────────────────────────────────────────────────────────────────────────
26
+ // compile-time tests (identity, all-different, dup-lo, dup-hi)
27
+ // 8-lane identity
28
+ static_assert(is_identity<std::uint32_t, 0, 1, 2, 3, 4, 5, 6, 7>(), "identity failed");
29
+ // 8-lane reverse is all-different but not identity
30
+ static_assert(is_all_different<std::uint32_t, 7, 6, 5, 4, 3, 2, 1, 0>(), "all-diff failed");
31
+ static_assert(!is_identity<std::uint32_t, 7, 6, 5, 4, 3, 2, 1, 0>(), "identity on reverse");
32
+ // 8-lane dup-lo (repeat 0..3 twice)
33
+ static_assert(is_dup_lo<std::uint32_t, 0, 1, 2, 3, 0, 1, 2, 3>(), "dup_lo failed");
34
+ static_assert(!is_dup_hi<std::uint32_t, 0, 1, 2, 3, 0, 1, 2, 3>(), "dup_hi on dup_lo");
35
+ // 8-lane dup-hi (repeat 4..7 twice)
36
+ static_assert(is_dup_hi<std::uint32_t, 4, 5, 6, 7, 4, 5, 6, 7>(), "dup_hi failed");
37
+ static_assert(!is_dup_lo<std::uint32_t, 4, 5, 6, 7, 4, 5, 6, 7>(), "dup_lo on dup_hi");
38
+ // ────────────────────────────────────────────────────────────────────────
39
+ // 4-lane identity
40
+ static_assert(is_identity<std::uint32_t, 0, 1, 2, 3>(), "4-lane identity failed");
41
+ // 4-lane reverse all-different but not identity
42
+ static_assert(is_all_different<std::uint32_t, 3, 2, 1, 0>(), "4-lane all-diff failed");
43
+ static_assert(!is_identity<std::uint32_t, 3, 2, 1, 0>(), "4-lane identity on reverse");
44
+ // 4-lane dup-lo (repeat 0..1 twice)
45
+ static_assert(is_dup_lo<std::uint32_t, 0, 1, 0, 1>(), "4-lane dup_lo failed");
46
+ static_assert(!is_dup_hi<std::uint32_t, 0, 1, 0, 1>(), "4-lane dup_hi on dup_lo");
47
+ // 4-lane dup-hi (repeat 2..3 twice)
48
+ static_assert(is_dup_hi<std::uint32_t, 2, 3, 2, 3>(), "4-lane dup_hi failed");
49
+ static_assert(!is_dup_lo<std::uint32_t, 2, 3, 2, 3>(), "4-lane dup_lo on dup_hi");
50
+
51
+ static_assert(is_cross_lane<0, 1, 0, 1>(), "dup-lo only → crossing");
52
+ static_assert(is_cross_lane<2, 3, 2, 3>(), "dup-hi only → crossing");
53
+ static_assert(is_cross_lane<0, 3, 3, 3>(), "one low + rest high → crossing");
54
+ static_assert(!is_cross_lane<1, 0, 2, 3>(), "mixed low/high → no crossing");
55
+ static_assert(!is_cross_lane<0, 1, 2, 3>(), "mixed low/high → no crossing");
56
+
57
+ static_assert(no_duplicates_v<0, 1, 2, 3>(), "N=4: [0,1,2,3] → distinct");
58
+ static_assert(!no_duplicates_v<0, 1, 2, 2>(), "N=4: [0,1,2,2] → dup");
59
+
60
+ static_assert(no_duplicates_v<0, 1, 2, 3, 4, 5, 6, 7>(), "N=8: [0..7] → distinct");
61
+ static_assert(!no_duplicates_v<0, 1, 2, 3, 4, 5, 6, 0>(), "N=8: last repeats 0");
53
62
  }
54
- };
63
+ }
55
64
  }
56
65
 
57
- template <class T>
58
- struct Reversor
66
+ namespace xsimd
59
67
  {
60
- static constexpr T get(T i, T n)
68
+ template <template <class> class Pattern, class Vec>
69
+ void fill_pattern(Vec& dst, const Vec& src)
61
70
  {
62
- return n - 1 - i;
71
+ using size_type = typename Vec::size_type;
72
+ for (size_type i = 0; i < src.size(); ++i)
73
+ {
74
+ dst[i] = src[Pattern<size_type>::get(i, static_cast<size_type>(src.size()))];
75
+ }
63
76
  }
64
- };
65
77
 
66
- template <class T>
67
- struct Last
68
- {
69
- static constexpr T get(T, T n)
78
+ template <class T>
79
+ struct Reversor
70
80
  {
71
- return n - 1;
72
- }
73
- };
81
+ static constexpr T get(T i, T n) { return n - 1 - i; }
82
+ };
83
+ template <class T>
84
+ struct Last
85
+ {
86
+ static constexpr T get(T, T n) { return n - 1; }
87
+ };
88
+ template <class T>
89
+ struct DupReal
90
+ {
91
+ static constexpr T get(T i, T) { return (i & ~T { 1 }); }
92
+ };
74
93
 
75
- template <class T>
76
- struct Dup
77
- {
78
- static constexpr T get(T i, T)
94
+ template <class T>
95
+ struct DupImag
79
96
  {
80
- return 2 * (i / 2);
81
- }
82
- };
97
+ static constexpr T get(T i, T) { return (i & ~T { 1 }) + 1; }
98
+ };
99
+ template <class T>
100
+ struct SwapRI
101
+ {
102
+ static constexpr T get(T i, T)
103
+ {
104
+ return i ^ T { 1 };
105
+ }
106
+ };
107
+ template <class T>
108
+ struct Identity
109
+ {
110
+ static constexpr T get(T i, T) { return i; }
111
+ };
112
+ template <class T>
113
+ struct DupLowPair
114
+ {
115
+ static constexpr T get(T i, T) { return i / 2; }
116
+ };
117
+ template <class T>
118
+ struct DupHighPair
119
+ {
120
+ static constexpr T get(T i, T n) { return n / 2 + i / 2; }
121
+ };
83
122
 
84
- template <class T>
85
- struct as_index
86
- {
87
- using type = xsimd::as_unsigned_integer_t<T>;
88
- };
123
+ template <class T>
124
+ struct RotateRight1
125
+ {
126
+ static constexpr T get(T i, T n) { return (i + n - 1) % n; }
127
+ };
128
+ template <class T>
129
+ struct RotateLeft1
130
+ {
131
+ static constexpr T get(T i, T n) { return (i + 1) % n; }
132
+ };
89
133
 
90
- template <class T>
91
- struct as_index<std::complex<T>> : as_index<T>
92
- {
93
- };
134
+ template <class T>
135
+ struct ReversePairs
136
+ {
137
+ static constexpr T get(T i, T) { return (i & ~T { 1 }) | (1 - (i & T { 1 })); }
138
+ };
139
+ template <class T>
140
+ struct EvenThenOdd
141
+ {
142
+ static constexpr T get(T i, T n)
143
+ {
144
+ return (i < n / 2 ? 2 * i : 2 * (i - n / 2) + 1);
145
+ }
146
+ };
147
+ template <class T>
148
+ struct OddThenEven
149
+ {
150
+ static constexpr T get(T i, T n)
151
+ {
152
+ return (i < n / 2 ? 2 * i + 1 : 2 * (i - n / 2));
153
+ }
154
+ };
155
+ template <class T>
156
+ struct InterleavePairs
157
+ {
158
+ static constexpr T get(T i, T n)
159
+ {
160
+ return (i & 1) ? (i / 2 + n / 2) : (i / 2);
161
+ }
162
+ };
163
+ template <class T>
164
+ struct as_index
165
+ {
166
+ using type = xsimd::as_unsigned_integer_t<T>;
167
+ };
94
168
 
169
+ template <class T>
170
+ struct as_index<std::complex<T>> : as_index<T>
171
+ {
172
+ };
173
+ } // namespace xsimd
174
+
175
+ //------------------------------------------------------------------------------
176
+ // insert_test: unchanged from original
177
+ //------------------------------------------------------------------------------
95
178
  template <class B>
96
179
  struct insert_test
97
180
  {
98
181
  using batch_type = B;
99
182
  using value_type = typename B::value_type;
100
- static constexpr size_t size = B::size;
101
183
 
102
184
  void insert_first()
103
185
  {
104
186
  value_type fill_value = 0;
105
187
  value_type sentinel_value = 1;
106
188
  batch_type v(fill_value);
107
- batch_type w = insert(v, sentinel_value, ::xsimd::index<0>());
108
- std::array<value_type, batch_type::size> data;
189
+ batch_type w = xsimd::insert(v, sentinel_value, xsimd::index<0>());
190
+ std::array<value_type, batch_type::size> data {};
109
191
  w.store_unaligned(data.data());
110
192
  CHECK_SCALAR_EQ(data.front(), sentinel_value);
111
- for (size_t i = 1; i < batch_type::size; ++i)
193
+ for (std::size_t i = 1; i < batch_type::size; ++i)
112
194
  CHECK_SCALAR_EQ(data[i], fill_value);
113
195
  }
114
196
 
@@ -117,10 +199,11 @@ struct insert_test
117
199
  value_type fill_value = 0;
118
200
  value_type sentinel_value = 1;
119
201
  batch_type v(fill_value);
120
- batch_type w = insert(v, sentinel_value, ::xsimd::index<batch_type::size - 1>());
121
- std::array<value_type, batch_type::size> data;
202
+ batch_type w = xsimd::insert(v, sentinel_value,
203
+ xsimd::index<batch_type::size - 1>());
204
+ std::array<value_type, batch_type::size> data {};
122
205
  w.store_unaligned(data.data());
123
- for (size_t i = 0; i < batch_type::size - 1; ++i)
206
+ for (std::size_t i = 0; i < batch_type::size - 1; ++i)
124
207
  CHECK_SCALAR_EQ(data[i], fill_value);
125
208
  CHECK_SCALAR_EQ(data.back(), sentinel_value);
126
209
  }
@@ -129,15 +212,8 @@ struct insert_test
129
212
  TEST_CASE_TEMPLATE("[insert_test]", B, BATCH_TYPES)
130
213
  {
131
214
  insert_test<B> Test;
132
- SUBCASE("insert_first")
133
- {
134
- Test.insert_first();
135
- }
136
-
137
- SUBCASE("insert_last")
138
- {
139
- Test.insert_last();
140
- }
215
+ SUBCASE("insert_first") { Test.insert_first(); }
216
+ SUBCASE("insert_last") { Test.insert_last(); }
141
217
  }
142
218
 
143
219
  template <class B>
@@ -146,120 +222,87 @@ struct swizzle_test
146
222
  using batch_type = B;
147
223
  using value_type = typename B::value_type;
148
224
  using arch_type = typename B::arch_type;
149
- static constexpr size_t size = B::size;
225
+ static constexpr std::size_t N = B::size;
226
+ using vec_t = std::array<value_type, N>;
150
227
 
151
- void rotate_right()
228
+ // Build the input [1,3,5,...,2N-1]
229
+ static vec_t make_lhs()
152
230
  {
153
- xsimd::init_swizzle_base<value_type, size> swizzle_base;
154
- auto swizzle_vecs = swizzle_base.create_swizzle_vectors();
155
- auto v_lhs = swizzle_vecs[0];
156
- auto v_exped = swizzle_vecs[4];
157
-
158
- B b_lhs = B::load_unaligned(v_lhs.data());
159
- B b_exped = B::load_unaligned(v_exped.data());
160
-
161
- B b_res = xsimd::rotate_right<1>(b_lhs);
162
- CHECK_BATCH_EQ(b_res, b_exped);
231
+ vec_t v;
232
+ for (std::size_t i = 0; i < N; ++i)
233
+ v[i] = static_cast<value_type>(2 * i + 1);
234
+ return v;
163
235
  }
164
236
 
165
- void rotate_left()
237
+ template <template <class> class Pattern>
238
+ void run()
166
239
  {
167
- xsimd::init_swizzle_base<value_type, size> swizzle_base;
168
- auto swizzle_vecs = swizzle_base.create_swizzle_vectors();
169
- auto v_lhs = swizzle_vecs[0];
170
- auto v_exped = swizzle_vecs[5];
240
+ vec_t lhs = make_lhs();
241
+ vec_t expect = lhs;
242
+ xsimd::fill_pattern<Pattern>(expect, lhs);
171
243
 
172
- B b_lhs = B::load_unaligned(v_lhs.data());
173
- B b_exped = B::load_unaligned(v_exped.data());
244
+ auto b_lhs = batch_type::load_unaligned(lhs.data());
245
+ auto b_expect = batch_type::load_unaligned(expect.data());
174
246
 
175
- B b_res = xsimd::rotate_left<1>(b_lhs);
176
- CHECK_BATCH_EQ(b_res, b_exped);
247
+ using idx_t = typename xsimd::as_index<value_type>::type;
248
+ auto idx_batch = xsimd::make_batch_constant<idx_t, Pattern<idx_t>, arch_type>();
249
+
250
+ CHECK_BATCH_EQ(xsimd::swizzle(b_lhs, idx_batch), b_expect);
251
+ CHECK_BATCH_EQ(xsimd::swizzle(b_lhs,
252
+ static_cast<xsimd::batch<idx_t, arch_type>>(idx_batch)),
253
+ b_expect);
177
254
  }
178
255
 
179
- void swizzle_reverse()
256
+ void rotate_right()
180
257
  {
181
- xsimd::init_swizzle_base<value_type, size> swizzle_base;
182
- auto swizzle_vecs = swizzle_base.create_swizzle_vectors();
183
- auto v_lhs = swizzle_vecs[0];
184
- auto v_exped = swizzle_vecs[1];
185
-
186
- B b_lhs = B::load_unaligned(v_lhs.data());
187
- B b_exped = B::load_unaligned(v_exped.data());
188
-
189
- using index_type = typename as_index<value_type>::type;
190
- auto index_batch = xsimd::make_batch_constant<index_type, Reversor<index_type>, arch_type>();
191
-
192
- B b_res = xsimd::swizzle(b_lhs, index_batch);
193
- CHECK_BATCH_EQ(b_res, b_exped);
194
-
195
- B b_dyres = xsimd::swizzle(b_lhs, (xsimd::batch<index_type, arch_type>)index_batch);
196
- CHECK_BATCH_EQ(b_dyres, b_exped);
258
+ vec_t lhs = make_lhs(), expect;
259
+ std::rotate_copy(lhs.begin(), lhs.end() - 1, lhs.end(), expect.begin());
260
+ CHECK_BATCH_EQ(xsimd::rotate_right<1>(batch_type::load_unaligned(lhs.data())),
261
+ batch_type::load_unaligned(expect.data()));
197
262
  }
198
-
199
- void swizzle_fill()
263
+ void rotate_left()
200
264
  {
201
- xsimd::init_swizzle_base<value_type, size> swizzle_base;
202
- auto swizzle_vecs = swizzle_base.create_swizzle_vectors();
203
- auto v_lhs = swizzle_vecs[0];
204
- auto v_exped = swizzle_vecs[2];
205
-
206
- B b_lhs = B::load_unaligned(v_lhs.data());
207
- B b_exped = B::load_unaligned(v_exped.data());
208
-
209
- using index_type = typename as_index<value_type>::type;
210
- auto index_batch = xsimd::make_batch_constant<index_type, Last<index_type>, arch_type>();
211
-
212
- B b_res = xsimd::swizzle(b_lhs, index_batch);
213
- CHECK_BATCH_EQ(b_res, b_exped);
214
-
215
- B b_dyres = xsimd::swizzle(b_lhs, (xsimd::batch<index_type, arch_type>)index_batch);
216
- CHECK_BATCH_EQ(b_dyres, b_exped);
265
+ vec_t lhs = make_lhs(), expect;
266
+ std::rotate_copy(lhs.begin(), lhs.begin() + 1, lhs.end(), expect.begin());
267
+ CHECK_BATCH_EQ(xsimd::rotate_left<1>(batch_type::load_unaligned(lhs.data())),
268
+ batch_type::load_unaligned(expect.data()));
217
269
  }
218
-
219
- void swizzle_dup()
270
+ void rotate_left_inv()
220
271
  {
221
- xsimd::init_swizzle_base<value_type, size> swizzle_base;
222
- auto swizzle_vecs = swizzle_base.create_swizzle_vectors();
223
- auto v_lhs = swizzle_vecs[0];
224
- auto v_exped = swizzle_vecs[3];
225
-
226
- B b_lhs = B::load_unaligned(v_lhs.data());
227
- B b_exped = B::load_unaligned(v_exped.data());
228
-
229
- using index_type = typename as_index<value_type>::type;
230
- auto index_batch = xsimd::make_batch_constant<index_type, Dup<index_type>, arch_type>();
231
-
232
- B b_res = xsimd::swizzle(b_lhs, index_batch);
233
- CHECK_BATCH_EQ(b_res, b_exped);
234
-
235
- B b_dyres = xsimd::swizzle(b_lhs, (xsimd::batch<index_type, arch_type>)index_batch);
236
- CHECK_BATCH_EQ(b_dyres, b_exped);
272
+ vec_t lhs = make_lhs(), expect;
273
+ std::rotate_copy(lhs.begin(), lhs.end() - 1, lhs.end(), expect.begin());
274
+ CHECK_BATCH_EQ(xsimd::rotate_left<N - 1>(batch_type::load_unaligned(lhs.data())),
275
+ batch_type::load_unaligned(expect.data()));
237
276
  }
238
277
  };
239
278
 
279
+ // Macro to instantiate one SUBCASE per pattern
280
+ #define XSIMD_SWIZZLE_PATTERN_CASE(PAT) \
281
+ SUBCASE(#PAT) { swizzle_test<B>().template run<xsimd::PAT>(); }
282
+
240
283
  TEST_CASE_TEMPLATE("[swizzle]", B, BATCH_SWIZZLE_TYPES)
241
284
  {
242
- swizzle_test<B> Test;
243
- SUBCASE("reverse")
244
- {
245
- Test.swizzle_reverse();
246
- }
247
-
248
- SUBCASE("rotate")
249
- {
250
- Test.rotate_left();
251
- Test.rotate_right();
252
- }
253
-
254
- SUBCASE("fill")
255
- {
256
- Test.swizzle_fill();
257
- }
258
-
259
- SUBCASE("dup")
260
- {
261
- Test.swizzle_dup();
262
- }
285
+ // All existing patterns:
286
+ XSIMD_SWIZZLE_PATTERN_CASE(Reversor);
287
+ XSIMD_SWIZZLE_PATTERN_CASE(Last);
288
+ XSIMD_SWIZZLE_PATTERN_CASE(DupReal);
289
+ XSIMD_SWIZZLE_PATTERN_CASE(DupImag);
290
+ XSIMD_SWIZZLE_PATTERN_CASE(SwapRI);
291
+ XSIMD_SWIZZLE_PATTERN_CASE(Identity);
292
+ XSIMD_SWIZZLE_PATTERN_CASE(DupLowPair);
293
+ XSIMD_SWIZZLE_PATTERN_CASE(DupHighPair);
294
+ XSIMD_SWIZZLE_PATTERN_CASE(RotateRight1);
295
+ XSIMD_SWIZZLE_PATTERN_CASE(RotateLeft1);
296
+ XSIMD_SWIZZLE_PATTERN_CASE(ReversePairs);
297
+ XSIMD_SWIZZLE_PATTERN_CASE(EvenThenOdd);
298
+ XSIMD_SWIZZLE_PATTERN_CASE(OddThenEven);
299
+ XSIMD_SWIZZLE_PATTERN_CASE(InterleavePairs);
300
+ // Rotation checks:
301
+ SUBCASE("rotate_left") { swizzle_test<B>().rotate_left(); }
302
+ SUBCASE("rotate_left_inv") { swizzle_test<B>().rotate_left_inv(); }
303
+ SUBCASE("rotate_right") { swizzle_test<B>().rotate_right(); }
263
304
  }
264
305
 
265
- #endif
306
+ #undef XSIMD_SWIZZLE_PATTERN_CASE
307
+
308
+ #endif /* XSIMD_NO_SUPPORTED_ARCHITECTURE */
@@ -39,7 +39,9 @@ struct load_store_test
39
39
  using ulong_vector_type = std::vector<unsigned long, allocator<unsigned long>>;
40
40
  #endif
41
41
  using float_vector_type = std::vector<float, allocator<float>>;
42
+ #if !XSIMD_WITH_NEON || XSIMD_WITH_NEON64
42
43
  using double_vector_type = std::vector<double, allocator<double>>;
44
+ #endif
43
45
 
44
46
  int8_vector_type i8_vec;
45
47
  uint8_vector_type ui8_vec;
@@ -54,7 +56,9 @@ struct load_store_test
54
56
  ulong_vector_type ul_vec;
55
57
  #endif
56
58
  float_vector_type f_vec;
59
+ #if !XSIMD_WITH_NEON || XSIMD_WITH_NEON64
57
60
  double_vector_type d_vec;
61
+ #endif
58
62
 
59
63
  array_type expected;
60
64
 
@@ -73,7 +77,9 @@ struct load_store_test
73
77
  init_test_vector(ul_vec);
74
78
  #endif
75
79
  init_test_vector(f_vec);
80
+ #if !XSIMD_WITH_NEON || XSIMD_WITH_NEON64
76
81
  init_test_vector(d_vec);
82
+ #endif
77
83
  }
78
84
 
79
85
  void test_load()
@@ -46,7 +46,7 @@ TEST_CASE("[is_aligned]")
46
46
  float f[100];
47
47
  void* unaligned_f = static_cast<void*>(&f[0]);
48
48
  constexpr std::size_t alignment = xsimd::default_arch::alignment();
49
- std::size_t aligned_f_size;
49
+ std::size_t aligned_f_size = sizeof(f);
50
50
  void* aligned_f = std::align(alignment, sizeof(f), unaligned_f, aligned_f_size);
51
51
  CHECK_UNARY(xsimd::is_aligned(aligned_f));
52
52
 
@@ -13,6 +13,7 @@
13
13
  #ifndef XSIMD_NO_SUPPORTED_ARCHITECTURE
14
14
 
15
15
  #include "test_utils.hpp"
16
+ #include <iostream>
16
17
 
17
18
  template <class B>
18
19
  struct power_test
@@ -40,9 +41,9 @@ struct power_test
40
41
  for (size_t i = 0; i < nb_input; ++i)
41
42
  {
42
43
  zero_input[i] = 0;
43
- lhs_input[i] = value_type(i) / 4 + value_type(1.2) * std::sqrt(value_type(i + 0.25));
44
+ lhs_input[i] = value_type(i / 4 + 1.2 * std::sqrt(i + 0.25));
44
45
  zlhs_input[i] = lhs_input[i] * (i % 2);
45
- rhs_input[i] = value_type(10.2) / (i + 2) + value_type(0.25);
46
+ rhs_input[i] = value_type(10.2 / (i + 2) + 0.25);
46
47
  }
47
48
 
48
49
  expected.resize(nb_input);
@@ -103,6 +104,7 @@ struct power_test
103
104
  CHECK_EQ(diff, 0);
104
105
  #endif
105
106
  }
107
+ #ifndef __FAST_MATH__
106
108
  // pow 0^-x
107
109
  {
108
110
  std::transform(zero_input.cbegin(), zero_input.cend(), rhs_input.cbegin(), expected.begin(),
@@ -120,17 +122,18 @@ struct power_test
120
122
  INFO("pow(0, -x)");
121
123
  CHECK_EQ(diff, 0);
122
124
  }
125
+ #endif
123
126
  // ipow
124
127
  {
125
128
  long k = 0;
126
129
  std::transform(lhs_input.cbegin(), lhs_input.cend(), expected.begin(),
127
130
  [&k, this](const value_type& l)
128
- { auto arg = k / size - nb_input / size / 2; ++k; return std::pow(l, arg); });
131
+ { auto arg = k / size / 8000 - nb_input / size / 8000 / 2; ++k; return std::pow(l, arg); });
129
132
  batch_type lhs_in, out;
130
133
  for (size_t i = 0; i < nb_input; i += size)
131
134
  {
132
135
  detail::load_batch(lhs_in, lhs_input, i);
133
- out = pow(lhs_in, i / size - nb_input / size / 2);
136
+ out = pow(lhs_in, i / size / 8000 - nb_input / size / 8000 / 2);
134
137
  detail::store_batch(out, res, i);
135
138
  }
136
139
  size_t diff = detail::get_nb_diff(res, expected);
@@ -34,10 +34,14 @@ struct select_test
34
34
  nb_input = size * 10000;
35
35
  lhs_input.resize(nb_input);
36
36
  rhs_input.resize(nb_input);
37
+ auto clamp = [](double v)
38
+ {
39
+ return static_cast<value_type>(std::min(v, static_cast<double>(std::numeric_limits<value_type>::max())));
40
+ };
37
41
  for (size_t i = 0; i < nb_input; ++i)
38
42
  {
39
- lhs_input[i] = value_type(i) / 4 + value_type(1.2) * std::sqrt(value_type(i + 0.25));
40
- rhs_input[i] = value_type(10.2) / (i + 2) + value_type(0.25);
43
+ lhs_input[i] = clamp(i / 4 + 1.2 * std::sqrt(i + 0.25));
44
+ rhs_input[i] = clamp(10.2 / (i + 2) + 0.25);
41
45
  }
42
46
  expected.resize(nb_input);
43
47
  res.resize(nb_input);